CORDIS OpenAire Datacite Sygma HAL Clermont Université Bielefeld Academic Search Engine (BASE) HAL-IRD Horizon / Pleins textes DOAJ Crossref Microsoft Academic Graph Europe PubMed Central HAL Evry HAL INRAE UnpayWall HAL - Université de Bourgogne (HAL-uB) HAL Descartes Agritrop OpenAPC Global Initiative PubMed Central Copenhagen University Research Information System European Union Open Data Portal https://www.nature.com/articles/s41467-019-14197-9.pdf https://doi.org/10.1038/s41467-019-14197-9 Nature Communications Open Access 2020-01-24 2020-11-20 Abstract<p>White lupin (Lupinus albus L.) is an annual crop cultivated for its protein-rich seeds. It is adapted to poor soils due to the production of cluster roots, which are made of dozens of determinate lateral roots that drastically improve soil exploration and nutrient acquisition (mostly phosphate). Using long-read sequencing technologies, we provide a high-quality genome sequence of a cultivated accession of white lupin (2n￢ﾀﾉ=￢ﾀﾉ50, 451￢ﾀﾉMb), as well as de novo assemblies of a landrace and a wild relative. We describe a modern accession displaying increased soil exploration capacity through early establishment of lateral and cluster roots. We also show how seed quality may have been impacted by domestication in term of protein profiles and alkaloid content. The availability of a high-quality genome assembly together with companion genomic and transcriptomic resources will enable the development of modern breeding strategies to increase and stabilize white lupin yield.</p> Repetitive Sequences, Nucleic Acid/genetics 0301 basic medicine [SDV]Life Sciences [q-bio] Plant Roots/genetics Gene Dosage Plant Science Crop Alkaloids/chemistry Plant Roots Gene Repetitive Sequences 630 Agricultural and Biological Sciences Domestication Soil Models Symbiotic Nitrogen Fixation in Legumes Gene Duplication [SDV.BV] Life Sciences [q-bio]/Vegetal Biology http://aims.fao.org/aos/agrovoc/c_3224 Plant Proteins/metabolism Plant Proteins 2. Zero hunger 0303 health sciences Genome Q http://aims.fao.org/aos/agrovoc/c_27583 Life Sciences Transcriptome/genetics http://aims.fao.org/aos/agrovoc/c_92382 Polymorphism, Single Nucleotide/genetics Lupinus [SDV] Life Sciences [q-bio] Protein Crop Seeds http://aims.fao.org/aos/agrovoc/c_5956 White (mutation) Single Nucleotide/genetics Sequence Analysis Genome, Plant expression des gènes http://aims.fao.org/aos/agrovoc/c_4464 Synteny/genetics Evolution Lupin Seeds Science Centromere Lupinus/genetics Polymorphism, Single Nucleotide Article génomique Evolution, Molecular Evolution and Nutritional Properties of Lupin Seeds physiologie végétale 03 medical and health sciences Alkaloids Genetic Nucleic Acid/genetics Seeds/physiology Centromere/genetics Genetics [SDV.BV]Life Sciences [q-bio]/Vegetal Biology Polymorphism Biology Ecology, Evolution, Behavior and Systematics Repetitive Sequences, Nucleic Acid Sequence assembly http://aims.fao.org/aos/agrovoc/c_25189 Ecotype Models, Genetic génome Botany Molecular Genetic Variation Molecular Sequence Annotation Plant DNA Sequence Analysis, DNA séquence nucléotidique 15. Life on land http://aims.fao.org/aos/agrovoc/c_27527 Agronomy Plant Leaves Evolution and Ecology of Endophyte-Grass Symbiosis Lupinus albus FOS: Biological sciences Genomic Structural Variation Plant Leaves/metabolism Gene expression Transcriptome amélioration des plantes Alexandre Soriano, Barbara Hufnagel, Benjamin Péret, Karine Gallardo, Pierre-Marc Delaux, André Marques, Patrick Doumas, Laurence Marquès, Jemma Taylor, Matthew R. Nelson, Matthew R. Nelson, Thomas Blein, Romain Guyot, Delphine Aime, Fernando Geu-Flores, Davide Mancinotti, Sébastien Carrère, Cecile Huneau, Jérôme Gouzy, William Marande, Martin Crespi, Jérôme Salse, Veit Schubert, Erika Sallet, Jean Keller, Fanchon Divol, Sandrine Arribat, Hélène Bergès, Malika Laguerre, 2020-01-24 journalpaper Abstract<p>White lupin (Lupinus albus L.) is an annual crop cultivated for its protein-rich seeds. It is adapted to poor soils due to the production of cluster roots, which are made of dozens of determinate lateral roots that drastically improve soil exploration and nutrient acquisition (mostly phosphate). Using long-read sequencing technologies, we provide a high-quality genome sequence of a cultivated accession of white lupin (2n￢ﾀﾉ=￢ﾀﾉ50, 451￢ﾀﾉMb), as well as de novo assemblies of a landrace and a wild relative. We describe a modern accession displaying increased soil exploration capacity through early establishment of lateral and cluster roots. We also show how seed quality may have been impacted by domestication in term of protein profiles and alkaloid content. The availability of a high-quality genome assembly together with companion genomic and transcriptomic resources will enable the development of modern breeding strategies to increase and stabilize white lupin yield.</p> High-quality genome sequence of white lupin provides insight into soil exploration and seed quality 10.1038/s41467-019-14197-9