Legume roots can be symbiotically colonized by arbuscular mycorrhizal (AM) fungi and nitrogen-fixing bacteria. In Lotus japonicus, the latter occurs intracellularly by the cognate rhizobial partner Mesorhizobium loti or intercellularly with the Agrobacterium pusense strain IRBG74. Although these symbiotic programs show distinctive cellular and transcriptome signatures, some molecular components are shared. In this study, we demonstrate that 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 1 (DAHPS1), the first enzyme in the biosynthetic pathway of aromatic amino acids (AAAs), plays a critical role in root hair development and for AM and rhizobial symbioses in Lotus. Two homozygous DAHPS1 mutants (dahps1-1 and dahps1-2) showed drastic alterations in root hair morphology, associated with alterations in cell wall dynamics and a progressive disruption of the actin cytoskeleton. The altered root hair structure was prevented by pharmacological and genetic complementation. dahps1-1 and dahps1-2 showed significant reductions in rhizobial infection (intracellular and intercellular) and nodule organogenesis and a delay in AM colonization. RNAseq analysis of dahps1-2 roots suggested that these phenotypes are associated with downregulation of several cell wall\uffe2\uff80\uff93related genes, and with an attenuated signaling response. Interestingly, the dahps1 mutants showed no detectable pleiotropic effects, suggesting a more selective recruitment of this gene in certain biological processes. This work provides robust evidence linking AAA metabolism to root hair development and successful symbiotic associations.Rumen microbiota modulation during the pre-weaning period has been suggested as means to affect animal performance later in life. In this follow-up study, we examined the post-weaning rumen microbiota development differences in monozygotic twin-heifers that were inoculated (T-group) or not inoculated (C-group) (n\uffe2\uff80\uff89=\uffe2\uff80\uff894 each) with fresh adult rumen liquid during their pre-weaning period. We also assessed the treatment effect on production parameters and methane emissions of cows during their 1st lactation period. The rumen microbiota was determined by the 16S rRNA gene, 18S rRNA gene, and ITS1 amplicon sequencing. Animal weight gain and rumen fermentation parameters were monitored from 2 to 12\uffe2\uff80\uff89months of age. The weight gain was not affected by treatment, but butyrate proportion was higher in T-group in month 3 (p\uffe2\uff80\uff89=\uffe2\uff80\uff890.04). Apart from archaea (p\uffe2\uff80\uff89=\uffe2\uff80\uff890.084), the richness of bacteria (p\uffe2\uff80\uff89<\uffe2\uff80\uff890.0001) and ciliate protozoa increased until month 7 (p\uffe2\uff80\uff89=\uffe2\uff80\uff890.004) and anaerobic fungi until month 11 (p\uffe2\uff80\uff89=\uffe2\uff80\uff890.005). The microbiota structure, measured as Bray\uffe2\uff80\uff93Curtis distances, continued to develop until months 3, 6, 7, and 10, in archaea, ciliate protozoa, bacteria, and anaerobic fungi, respectively (for all: p\uffe2\uff80\uff89=\uffe2\uff80\uff890.001). Treatment or age \uffc3\uff97 treatment interaction had a significant (p\uffe2\uff80\uff89<\uffe2\uff80\uff890.05) effect on 18 bacterial, 2 archaeal, and 6 ciliate protozoan taxonomic groups, with differences occurring mostly before month 4 in bacteria, and month 3 in archaea and ciliate protozoa. Treatment stimulated earlier maturation of prokaryote community in T-group before month 4 and earlier maturation of ciliate protozoa at month 2 (Random Forest: 0.75\uffe2\uff80\uff89month for bacteria and 1.5\uffe2\uff80\uff89month for protozoa). No treatment effect on the maturity of anaerobic fungi was observed. The milk production and quality, feed efficiency, and methane emissions were monitored during cow\uffe2\uff80\uff99s 1st lactation. The T-group had lower variation in energy-corrected milk yield (p\uffe2\uff80\uff89<\uffe2\uff80\uff890.001), tended to differ in pattern of residual energy intake over time (p\uffe2\uff80\uff89=\uffe2\uff80\uff890.069), and had numerically lower somatic cell count throughout their 1st lactation period (p\uffe2\uff80\uff89=\uffe2\uff80\uff890.081), but no differences between the groups in methane emissions (g/d, g/kg DMI, or g/kg milk) were observed. Our results demonstrated that the orally administered microbial inoculant induced transient changes in early rumen microbiome maturation. In addition, the treatment may influence the later production performance, although the mechanisms that mediate these effects need to be further explored.
", "keywords": ["microbiome modulation", "0301 basic medicine", "570", "ta412", "microbiome establishment", "Heifer", "dairy cow", "Rumen function", "Animal science", " dairy science", "Microbiology", "630", "Microbiome modulation", "QR1-502", "rumen function", "Microbiome establishment", "03 medical and health sciences", "Dairy cow", "heifer"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2022.983823"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2022.983823", "name": "item", "description": "10.3389/fmicb.2022.983823", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2022.983823"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-11-08T00:00:00Z"}}, {"id": "11245.1/e982467a-6b87-4f88-8ac3-53d0fb37aeb2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:24:53Z", "type": "Journal Article", "created": "2024-05-01", "title": "Arabinosylation of cell wall extensin is required for the directional response to salinity in roots", "description": "AbstractSoil salinity is a major contributor to crop yield losses. To improve our understanding of root responses to salinity, we developed and exploited a real-time salt-induced tilting assay. This assay follows root growth upon both gravitropic and salt challenges, revealing that root bending upon tilting is modulated by Na+ ions, but not by osmotic stress. Next, we measured this salt-specific response in 345 natural Arabidopsis (Arabidopsis thaliana) accessions and discovered a genetic locus, encoding the cell wall-modifying enzyme EXTENSIN ARABINOSE DEFICIENT TRANSFERASE (ExAD) that is associated with root bending in the presence of NaCl (hereafter salt). Extensins are a class of structural cell wall glycoproteins known as hydroxyproline (Hyp)-rich glycoproteins, which are posttranslationally modified by O-glycosylation, mostly involving Hyp-arabinosylation. We show that salt-induced ExAD-dependent Hyp-arabinosylation influences root bending responses and cell wall thickness. Roots of exad1 mutant seedlings, which lack Hyp-arabinosylation of extensin, displayed increased thickness of root epidermal cell walls and greater cell wall porosity. They also showed altered gravitropic root bending in salt conditions and a reduced salt-avoidance response. Our results suggest that extensin modification via Hyp-arabinosylation is a unique salt-specific cellular process required for the directional response of roots exposed to salinity.Anthropogenic pressures on tropical forests are rapidly intensifying, but our understanding of their implications for biological diversity is still very limited, especially with regard to soil biota, and in particular soil bacterial communities. Here we evaluated bacterial community composition and diversity across a gradient of land use intensity in the eastern Amazon from undisturbed primary forest, through primary forests varyingly disturbed by fire, regenerating secondary forest, pasture, and mechanized agriculture. Soil bacteria were assessed by paired\uffe2\uff80\uff90end Illumina sequencing of 16S rRNA gene fragments (V4 region). The resulting sequences were clustered into operational taxonomic units (OTU) at a 97% similarity threshold. Land use intensification increased the observed bacterial diversity (both OTU richness and community heterogeneity across space) and this effect was strongly associated with changes in soil pH. Moreover, land use intensification and subsequent changes in soil fertility, especially pH, altered the bacterial community composition, with pastures and areas of mechanized agriculture displaying the most contrasting communities in relation to undisturbed primary forest. Together, these results indicate that tropical forest conversion impacts soil bacteria not through loss of diversity, as previously thought, but mainly by imposing marked shifts on bacterial community composition, with unknown yet potentially important implications for ecological functions and services performed by these communities.
", "keywords": ["Rios de composi\u00e7\u00e3o de comunidade bacteriana", "2. Zero hunger", "0301 basic medicine", "570", "0303 health sciences", "550", "Bacteria", "Biodiversidade subterr\u00e2nea", "Agriculture", "Biodiversity", "Forests", "15. Life on land", "Below\u2010ground biodiversity", "High\u2010throughput sequencing", "Soil", "03 medical and health sciences", "RNA", " Ribosomal", " 16S", "Sequenciamento de alto rendimento", "Rivers of bacterial community composition", "Soil Microbiology"]}, "links": [{"href": "https://eprints.lancs.ac.uk/id/eprint/82660/1/de_Carvalho_et_al_2016_raw_pdf.pdf"}, {"href": "https://doi.org/10.1002/ecy.1513"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ecy.1513", "name": "item", "description": "10.1002/ecy.1513", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ecy.1513"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-09-09T00:00:00Z"}}, {"id": "10.1002/ldr.3136", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:03Z", "type": "Journal Article", "created": "2018-08-18", "title": "Agroforestry systems: Meta-analysis of soil carbon stocks, sequestration processes, and future potentials", "description": "AbstractAgroforestry (AF) has the potential to restore degraded lands, provide a broader range of ecosystem goods and services such as carbon (C) sequestration and high biodiversity, and increase soil fertility and ecosystem stability through additional C input from trees, erosion prevention, and microclimate improvement. Advantages and processes for global C sequestration in AF are unknown. We used a meta\uffe2\uff80\uff90analysis of 427 soil C stock data pairs grouped into four main AF systems\uffe2\uff80\uff94alley cropping, windbreaks, silvopastures, and homegardens\uffe2\uff80\uff94and evaluated changes in AF and adjacent control cropland or pasture. Mean soil C stocks in AF (1\uffe2\uff80\uff90m depth) were 126\uffc2\uffa0Mg\uffc2\uffa0C\uffc2\uffb7ha\uffe2\uff88\uff921, which is 19% more than that in cropland or pasture. The highest C stocks in soil were in subtropical homegardens, AF with younger trees, and topsoil (0\uffe2\uff80\uff9320\uffc2\uffa0cm). Increased soil C stocks in AF were lower than aboveground C stocks in most AF systems, except alley cropping. Homegardens stored the highest C in both aboveground and belowground, especially in the subsoil (20\uffe2\uff80\uff93100\uffc2\uffa0cm). Advantages of AF ecosystem services focusing on mechanisms of belowground C sequestration were analyzed. AF could store 5.3\uffc2\uffa0\uffc3\uff97\uffc2\uffa0109\uffc2\uffa0Mg additional C in soil on 944\uffc2\uffa0Mha globally, with most in the tropics and subtropics. AF systems could greatly contribute to global soil C sequestration if used in larger areas. Future investigations of AF should include (a) mechanistic\uffe2\uff80\uff90 and process\uffe2\uff80\uff90based studies (instead of common monitoring and inventories), (b) models linking forest and crop growth with soil water and C and nutrient cycling, and (c) accurate assessments of the AF area worldwide based on the remote sensing approaches.
", "keywords": ["meta-analysis", "2. Zero hunger", "570", "550", "13. Climate action", "sustainable land use", "homegardens", "0401 agriculture", " forestry", " and fisheries", "agroforestry management", "04 agricultural and veterinary sciences", "15. Life on land", "ecosystem services", "carbon sequestration"]}, "links": [{"href": "https://doi.org/10.1002/ldr.3136"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Land%20Degradation%20%26amp%3B%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ldr.3136", "name": "item", "description": "10.1002/ldr.3136", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ldr.3136"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-09-04T00:00:00Z"}}, {"id": "10.1016/j.foreco.2009.07.026", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:16:02Z", "type": "Journal Article", "created": "2009-08-07", "title": "Selective Logging Of Lowland Evergreen Rainforests In Chiloe Island, Chile: Effects Of Changing Tree Species Composition On Soil Nitrogen Transformations", "description": "Lowland evergreen rainforests in southern Chile growing on highly productive soils and accessible sites have been subjected to traditional and industrial logging of valuable timber trees. Old-growth rain forests in this area are characterized by highly conservative N cycles, which results in an efficient N use of ecosystems. We hypothesize that different logging practices, by changing forest structure and species composition, can alter the quantity and quality (i.e. C/N ratio) of litterfall and soil organic matter and soil microbial processes that determine N storage and availability. To test this hypothesis we investigated chemical properties, microbial N transformations, N fluxes and N storage in soils of lowland evergreen rainforests of ChiloeIsland after 10 years since industrial selective logging (ISL) and in stands subjected to traditional selective logging (TSL) by landowners in small properties. We compared them to reference unlogged old-growth stands (OG) in the same area. Tree basal area was more reduced in the stands subjected to ISL than to TSL. Litterfall inputs were similar in both logging treatments as in OG stands. This was due to greater biomass of understory species after logging. In TSL understory tree species determined a higher litterfall C/N ratio than ISL. We found higher soil N availability and content of base cations in surface soils of logged forests than in OG. The litter horizon of OG forest had significantly higher rates of non-symbiotic N fixation than logged forests. In the ISL treatment there was a trend toward increasing soil denitrification and significantly higher NO 3-N/Nt ratio in spring waters, which led to a stronger d 15 N signal in surface and deep soils. We conclude that massive understory occupation by the shade-intolerant native bamboo Chusquea quila in ISL led to enhanced litter quality (lower C/N ratios) relaxing the tightness of the N cycle, which increased soil N availability leading to a higher proportion of nitrate in spring waters and higher gaseous N losses. In contrast, under TSL a higher litterfall C/N ratio slowed decomposition and net N mineralization rates thus reducing the chances for N losses, and enhancing C and N storage in soil. We suggest that sustainable logging practices in these rain forests should be based on lower rates of canopy removal to enhance colonization of the understory by shade- tolerant trees, which are associated with a more efficient N cycle.", "keywords": ["0106 biological sciences", "570", "Biolog\u00eda", "Fijaci\u00f3n del nitr\u00f3geno", "Tala de bosques - Chile", "Plantas - Crecimiento", "15. Life on land", "01 natural sciences"], "contacts": [{"organization": "P\u00e9rez Barrientos, Cecilia Antonieta, Carmona Ort\u00edz, Mart\u00edn Rub\u00e9n, Fari\u00f1a Rivas, Jos\u00e9 Miguel, Armesto, Juan J.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.foreco.2009.07.026"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Forest%20Ecology%20and%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.foreco.2009.07.026", "name": "item", "description": "10.1016/j.foreco.2009.07.026", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.foreco.2009.07.026"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-09-01T00:00:00Z"}}, {"id": "10.3389/fenvs.2019.00113", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:20:31Z", "type": "Journal Article", "created": "2019-08-22", "title": "Modeling of Soil Functions for Assessing Soil Quality: Soil Biodiversity and Habitat Provisioning", "description": "Soil biodiversity and habitat provisioning is one of the soil functions that agricultural land provides to society. This paper describes assessment of the soil biodiversity function (SB function) as a proof of concept to be used in a decision support tool for agricultural land management. The SB function is defined as \u201cthe multitude of soil organisms and processes, interacting in an ecosystem, providing society with a rich biodiversity source and contributing to a habitat for aboveground organisms.\u201d So far, no single measure provides the full overview of the soil biodiversity and how a soil supports a habitat for a biodiverse ecosystem. We have assembled a set of attributes for a proxy-indicator system, based on four \u201cintegrated attributes\u201d: (1) soil nutrient status, (2) soil biological status, (3) soil structure, and (4) soil hydrological status. These attributes provide information to be used in a model for assessing the capacity of a soil to supply the SB function. A multi-criteria decision model was developed which comprises of 34 attributes providing information to quantify the four integrated attributes and subsequently assess the SB function for grassland and for cropland separately. The model predictions (in terms of low\u2014moderate\u2014high soil biodiversity status) were compared with expert judgements for a collection of 137 grassland soils in the Netherlands and 52 French soils, 29 grasslands, and 23 croplands. For both datasets, the results show that the proposed model predictions were statistically significantly correlated with the expert judgements. A sensitivity analysis indicated that the soil nutrient status, defined by attributes such as pH and organic carbon content, was the most important integrated attribute in the assessment of the SB function. Further progress in the assessment of the SB function is needed. This can be achieved by better information regarding land use and farm management. In this way we may make a valuable step in our attempts to optimize the multiple soil functions in agricultural landscapes, and hence the multifaceted role of soils to deliver a bundle of ecosystem services for farmers and citizens, and support land management and policy toward a more sustainable society.", "keywords": ["2. Zero hunger", "570", "land management", "soil biodiversity", "04 agricultural and veterinary sciences", "[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study", "15. Life on land", "habitat provisioning", "630", "ecosystem service", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "Europe", "Environmental sciences", "soil function", "0401 agriculture", " forestry", " and fisheries", "GE1-350", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "qualitative modeling", "[SDV.SA.SDS] Life Sciences [q-bio]/Agricultural sciences/Soil study"]}, "links": [{"href": "https://doi.org/10.3389/fenvs.2019.00113"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Environmental%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fenvs.2019.00113", "name": "item", "description": "10.3389/fenvs.2019.00113", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fenvs.2019.00113"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-08-22T00:00:00Z"}}, {"id": "10.1111/1462-2920.13842", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:18:26Z", "type": "Journal Article", "created": "2017-06-27", "title": "Identification and characterisation of isoprene-degrading bacteria in an estuarine environment", "description": "SummaryApproximately one\uffe2\uff80\uff90third of volatile organic compounds (VOCs) emitted to the atmosphere consists of isoprene, originating from the terrestrial and marine biosphere, with a profound effect on atmospheric chemistry. However, isoprene provides an abundant and largely unexplored source of carbon and energy for microbes. The potential for isoprene degradation in marine and estuarine samples from the Colne Estuary, UK, was investigated using DNA\uffe2\uff80\uff90Stable Isotope Probing (DNA\uffe2\uff80\uff90SIP). Analysis at two timepoints showed the development of communities dominated by Actinobacteria including members of the genera Mycobacterium, Rhodococcus, Microbacterium and Gordonia. Representative isolates, capable of growth on isoprene as sole carbon and energy source, were obtained from marine and estuarine locations, and isoprene\uffe2\uff80\uff90degrading strains of Gordonia and Mycobacterium were characterised physiologically and their genomes were sequenced. Genes predicted to be required for isoprene metabolism, including four\uffe2\uff80\uff90component isoprene monooxygenases (IsoMO), were identified and compared with previously characterised examples. Transcriptional and activity assays of strains growing on isoprene or alternative carbon sources showed that growth on isoprene is an inducible trait requiring a specific IsoMO. This study is the first to identify active isoprene degraders in estuarine and marine environments using DNA\uffe2\uff80\uff90SIP and to characterise marine isoprene\uffe2\uff80\uff90degrading bacteria at the physiological and molecular level.
", "keywords": ["0301 basic medicine", "570", "Volatile Organic Compounds", "0303 health sciences", "550", "Base Sequence", "610", "QR Microbiology", "Sequence Analysis", " DNA", "Environment", "6. Clean water", "Mixed Function Oxygenases", "Mycobacterium", "03 medical and health sciences", "Hemiterpenes", "13. Climate action", "Pentanes", "Butadienes", "Rhodococcus", "14. Life underwater", "Gordonia Bacterium", "Research Articles", "Genome", " Bacterial", "GE Environmental Sciences"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/63998/4/Published_manuscript.pdf"}, {"href": "http://onlinelibrary.wiley.com/wol1/doi/10.1111/1462-2920.13842/fullpdf"}, {"href": "https://doi.org/10.1111/1462-2920.13842"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.13842", "name": "item", "description": "10.1111/1462-2920.13842", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.13842"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-07-21T00:00:00Z"}}, {"id": "10.1016/j.foreco.2008.06.008", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-26T16:16:01Z", "type": "Journal Article", "created": "2008-07-31", "title": "Response Of Litter Decomposition And Soil C And N Transformations In A Norway Spruce Thinning Stand To Removal Of Logging Residue", "description": "Abstract Increasing demand for production of bioenergy has led to an interest in forest management which uses logging residue from both clear-cuttings and thinning stands. The aim of this study was to investigate the effects of removal of logging residue in a thinning Norway spruce stand on (1) litter decomposition and (2) soil microbial processes in C and N cycling and the quality of soil organic matter. The study site was a 40-year-old Norway spruce stand growing on a relatively fertile site. During thinning, logging residue was either removed (whole-tree harvest) or left on the site (stem-only harvest). Different types of material in the logging residue, from main branches to needles, were weighed separately into mesh bags. The bags were placed above the moss layer in the whole-tree harvest treatment and in the logging residue layer in the stem-only harvest treatment, and decomposition was monitored for 5 years after treatment. From the humus layer, samples were taken 10 years after treatment. Harvest method affected the mass loss of the litter material very little but the C-to-N ratio of the remaining material was slightly higher in whole-tree harvest than in stem-only harvest, particularly in the needle material. In the humus layer samples, taken 10 years after treatment, the rate of C mineralization was lower in whole-tree harvest than in stem-only harvest; also the rate of net N mineralization and the amounts of C and N in the microbial biomass tended to be lower, although not statistically significantly. Removal of logging residue had no effect on pH ( p H H 2 O 3.9 in both treatments) or C-to-N ratio (28 in both treatments) in the humus layer. The concentrations of total water-soluble phenols and an important group of phenols, condensed tannins, were both lower in the humus layer of whole-tree harvest than in that of stem-only harvest. Concentrations of sesqui-, di- or triterpenes in the humus layer were similar in both treatments. In conclusion, 10 years after harvest, soil microbial activities and organic matter characteristics in whole-tree harvest differed from those in stem-only harvest.", "keywords": ["0106 biological sciences", "hakkuut\u00e4hteen korjuu", "terpeenit", "570", "0401 agriculture", " forestry", " and fisheries", "typen kierto", "04 agricultural and veterinary sciences", "fenoliset yhdisteet", "mikrobiprosessit", "15. Life on land", "kokopuun korjuu", "01 natural sciences"], "contacts": [{"organization": "Smolander, A., Levula, T., Kitunen, V.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.foreco.2008.06.008"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Forest%20Ecology%20and%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.foreco.2008.06.008", "name": "item", "description": "10.1016/j.foreco.2008.06.008", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.foreco.2008.06.008"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-08-01T00:00:00Z"}}, {"id": "10.1016/j.geoderma.2011.09.005", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:16:10Z", "type": "Journal Article", "created": "2011-11-03", "title": "Wildfire Effects On Soil Organic Matter Quantity And Quality In Two Fire-Prone Mediterranean Pine Forests", "description": "Open AccessFinancial support was supplied by the Institut National des Science d'Univers of the Centre National de Recherche Scienti\ufb01que (France), under the framework of the ECCO program 'QUANTICHAR'.", "keywords": ["570", "Soil organic matter (SOM)", "Mediterranean pine forests", "Wildfires", " Mediterranean pine forests", " Soil organic matter (SOM)", " Lignin", " Charcoal.", "04 agricultural and veterinary sciences", "15. Life on land", "Lignin", "630", "Wildfires", "13. Climate action", "Charcoal", "[SDE.ES] Environmental Sciences/Environment and Society", "0401 agriculture", " forestry", " and fisheries", "14. Life underwater", "Soil organic matter (SOM);", "[SDE.ES]Environmental Sciences/Environment and Society"]}, "links": [{"href": "https://doi.org/10.1016/j.geoderma.2011.09.005"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geoderma", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.geoderma.2011.09.005", "name": "item", "description": "10.1016/j.geoderma.2011.09.005", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.geoderma.2011.09.005"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-11-01T00:00:00Z"}}, {"id": "10.1016/j.still.2013.05.013", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:17:00Z", "type": "Journal Article", "created": "2013-06-29", "title": "Soil Quality Response To Long-Term Tillage And Crop Rotation Practices", "description": "Abstract Soil quality is influenced by inherent and anthropogenic factors. This study was conducted to provide multiple groups guidance on how to achieve and maintain improved soil quality/health. Our hypothesis was that tillage intensity was the primary anthropogenic factor degrading soil quality, and our objective was to prove that hypothesis through an intensive 2005 sampling of a central Iowa, USA field study. Chisel plow, disk tillage, moldboard plow, ridge-till and no-till treatments, used for 31 years in a two-year, corn ( Zea mays L.)/soybean [ Glycine max (L.) Merr.] (C/S) rotation or for 26 years of continuous corn (CC) production, were evaluated by measuring 23 potential soil quality indicators. Soil samples from 0 to 5- and 5 to 15-cm depth increments were collected from 158 loam or clay loam sampling sites throughout the 10-ha study site. Nine of the indicators were evaluated by depth increment using the Soil Management Assessment Framework (SMAF) which has scoring functions for 13 soil biological, chemical, and physical measurements and can be used to compute individual indicator indices and an overall soil quality index (SQI). Water-stable aggregation (WSA), total organic carbon (TOC), microbial biomass carbon (MBC), and potentially mineralizable nitrogen (PMN) were all significantly lower for the 0 to 5-cm and generally lower for 5 to 15-cm increments after long-term moldboard plowing and its associated secondary tillage operations. This presumably reflected greater physical breakup and oxidation of above- and below-ground plant residues. Bray-P concentrations in moldboard plow plots were also significantly lower at both depth increments. Between soil texture groups, significant differences were found for WSA, Bray-P, TOC and MBC at both depth increments and for both cropping systems. When combined into an overall SQI, both soil texture groups were functioning at 82\u201385% of their potential at 0\u20135-cm and at 75% of their potential at the 5\u201315-cm depth. Our hypothesis that moldboard plowing would have the greatest negative effect on soil quality indicators was verified. Based on this assessment, we recommend that to achieve and maintain good soil health, producers should strive to adopt less aggressive tillage practices.", "keywords": ["2. Zero hunger", "570", "Basic cation saturation ratio (BCSR)", "Soil-testing", "0401 agriculture", " forestry", " and fisheries", "Soil properties", "04 agricultural and veterinary sciences", "15. Life on land", "Soybean", "Conservation tillage", "630", "6. Clean water", "Maize"]}, "links": [{"href": "https://doi.org/10.1016/j.still.2013.05.013"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20and%20Tillage%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.still.2013.05.013", "name": "item", "description": "10.1016/j.still.2013.05.013", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.still.2013.05.013"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-10-01T00:00:00Z"}}, {"id": "oai:pub.uni-bielefeld.de:2986762", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:33:03Z", "type": "Report", "title": "Insights into Adaptations of Biogas-Producing Microbial Communities from Taxonomic Profiling, Metagenomically Assembled Genomes and Analysis of the Methanogenic Isolate Methanothermobacter wolfeii SIV6", "description": "Biogas is an important renewable energy source in Germany. However, in the course of the German energy transition and for political and economic reasons, biogas plants must become more flexible with regard to varying residue-based substrates and thus changing process conditions, while ensuring a stable and efficient process. To meet these requirements, a deeper understanding of the complex biogas-producing microbial communities and the role of community members in the anaerobic digestion (AD) process is necessary, under consideration of the prevailing process conditions. Therefore, the aim of this thesis was to comprehensively analyse biogas-producing microbial communities with regard to their adaptations to the process conditions in differently operated large-scale agricultural digesters. For this purpose, three different approaches were applied to unravel certain types of adaptations of the microbial communities within biogas plants.Selectively fluorinated compounds are found frequently in pharmaceutical and agrochemical products where currently 25\uffe2\uff80\uff9330\uffe2\uff80\uff89% of optimised compounds emerge from development containing at least one fluorine atom. There are many methods for the site\uffe2\uff80\uff90specific introduction of fluorine, but all are chemical and they often use environmentally challenging reagents. Biochemical processes for C\uffe2\uff88\uff92F bond formation are attractive, but they are extremely rare. In this work, the fluorinase enzyme, originally identified from the actinomycete bacterium Streptomyces cattleya, is engineered into Escherichia coli in such a manner that the organism is able to produce 5\uffe2\uff80\uffb2\uffe2\uff80\uff90fluorodeoxyadenosine (5\uffe2\uff80\uffb2\uffe2\uff80\uff90FDA) from S\uffe2\uff80\uff90adenosyl\uffe2\uff80\uff90l\uffe2\uff80\uff90methionine (SAM) and fluoride in live E.\uffe2\uff80\uff85coli cells. Success required the introduction of a SAM transporter and deletion of the endogenous fluoride efflux capacity in order to generate an E.\uffe2\uff80\uff85coli host that has the potential for future engineering of more elaborate fluorometabolites.
", "keywords": ["SAM transporters", "0301 basic medicine", "570", "S-Adenosylmethionine", "0303 health sciences", "Deoxyadenosines", "Halogenation", "DAS", "Fluorine", "Halogenations", "540", "QD Chemistry", "Streptomyces", "3. Good health", "03 medical and health sciences", "Bacterial Proteins", "Isomerism", "Escherichia coli", "QD", "Fluoride channels", "Genetic Engineering", "Oxidoreductases", "Fluorinases"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/cbic.202000051"}, {"href": "https://doi.org/10.1002/cbic.202000051"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/ChemBioChem", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/cbic.202000051", "name": "item", "description": "10.1002/cbic.202000051", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/cbic.202000051"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-03-03T00:00:00Z"}}, {"id": "10.1002/ece3.6547", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:13:57Z", "type": "Journal Article", "created": "2020-07-09", "title": "The distribution of herbivores between leaves matches their performance only in the absence of competitors", "description": "AbstractFew studies have tested how plant quality and the presence of competitors interact in determining how herbivores choose between different leaves within a plant. We investigated this in two herbivorous spider mites sharing tomato plants: Tetranychus urticae, which generally induces plant defenses, and Tetranychus evansi, which suppresses them, creating asymmetrical effects on coinfesting competitors. On uninfested plants, both herbivore species preferred young leaves, coinciding with increased mite performance. On plants with heterospecifics, the mites did not prefer leaves on which they had a better performance. In particular, T.\uffc2\uffa0urticae avoided leaves infested with T.\uffc2\uffa0evansi, which is in agreement with T.\uffc2\uffa0urticae being outcompeted by T.\uffc2\uffa0evansi. In contrast, T.\uffc2\uffa0evansi did not avoid leaves with the other species, but distributed itself evenly over plants infested with heterospecifics. We hypothesize that this behavior of T.\uffc2\uffa0evansi may prevent further spread of T.\uffc2\uffa0urticae over the shared plant. Our results indicate that leaf age determines within\uffe2\uff80\uff90plant distribution of herbivores only in absence of competitors. Moreover, they show that this distribution depends on the order of arrival of competitors and on their effects on each other, with herbivores showing differences in behavior within the plant as a possible response to the outcome of those interactions.Understanding anthropogenic influences on soil respiration (Rs) is critical for accurate predictions of soil carbon fluxes, but it is not known how Rs responds to grazing exclusion (GE). Here, we conducted a manipulative experiment in a meadow grassland on the Tibetan Plateau to investigate the effects of GE on Rs. The exclusion of livestock significantly increased soil moisture and above\uffe2\uff80\uff90ground biomass, but it decreased soil temperature, microbial biomass carbon (MBC), and Rs. Regression analysis indicated that the effects of GE on Rs were mainly due to changes in soil temperature, soil moisture, and MBC. Compared with the grazed blocks, GE significantly decreased soil carbon release by 23.6% over the growing season and 21.4% annually, but it increased the temperature sensitivity (Q10) of Rs by 6.5% and 14.2% for the growing season and annually respectively. Therefore, GE may reduce the release of soil carbon from the Tibetan Plateau, but under future climate warming scenarios, the increases in Q10 induced by GE could lead to increased carbon emissions.
", "keywords": ["570", "MICROBIAL RESPIRATION", "Environmental Sciences & Ecology", "Plant Productivity", "Temperature Sensitivity", "ALPINE GRASSLAND", "630", "Microbial Biomass Carbon", "NORTHERN CHINA", "SEASONAL PATTERNS", "MOUNTAIN GRASSLANDS", "Grazing Exclusion", "Tibetan Plateau", "PLANT-COMMUNITIES", "Original Research", "2. Zero hunger", "Science & Technology", "CLIMATE-CHANGE", "CO2 EFFLUX", "Ecology", "04 agricultural and veterinary sciences", "15. Life on land", "INNER-MONGOLIA", "BELOW-GROUND BIOMASS", "Soil Respiration", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Life Sciences & Biomedicine"]}, "links": [{"href": "https://doi.org/10.1002/ece3.1867"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.1867", "name": "item", "description": "10.1002/ece3.1867", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.1867"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-01-11T00:00:00Z"}}, {"id": "10.1002/ecs2.1804", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:13:58Z", "type": "Journal Article", "created": "2017-05-10", "title": "Non-Target Impacts Of Weed Control On Birds, Mammals, And Reptiles", "description": "AbstractThe impacts of invasive plant control on native animals are rarely evaluated. Using data from an eight\uffe2\uff80\uff90year study in southeastern Australia, we quantified the effects on native bird, mammal, and reptile species of (1) the abundance of the invasive Bitou Bush, Chrysanthemoides monilifera ssp. rotundata, and (2) a Bitou Bush control program, which involved repeated herbicide spraying interspersed with prescribed burning. We found that overall species richness of birds, mammals, and reptiles and the majority of individual vertebrate species were unresponsive to Bitou Bush cover and the number of plants. Two species including the nationally endangered Eastern Bristlebird (Dasyurus brachypterus) responded positively to measures of native vegetation cover following the control of Bitou Bush. Analyses of the effects of different components of the treatment protocol employed to control Bitou Bush revealed (1) no negative effects of spraying on vertebrate species richness; (2) negative effects of spraying on only one individual species (Scarlet Honeyeater); and (3) lower bird species richness but higher reptile species richness after fire. The occupancy of most individual vertebrates species was unaffected by burning; four species responded negatively and one positively to fire. Our study indicated that actions to remove Bitou Bush generally have few negative impacts on native vertebrates. We therefore suggest that controlling this highly invasive exotic plant species has only very limited negative impacts on vertebrate biota.
", "keywords": ["0106 biological sciences", "weed control", "570", "Secondary effects", "off-target impacts", "animal response to weed control", "Indirect impacts", "Fire management", "590", "Non-target impacts", "herbicide impact on animals", "Herbicide impact on animals", "01 natural sciences", "invasive alien plant management", "fire management", "indirect impacts", "14. Life underwater", "non-target impacts", "Invasive alien plant management", "weed management impacts", "Animal response to weed control", "Bitou Bush", "580", "secondary effects", "Weed management impacts", "15. Life on land", "Weed control", "Off-target impacts", "3. Good health", "13. Climate action"]}, "links": [{"href": "https://eprints.soton.ac.uk/407435/1/Lindenmayer_et_al_2017_Ecopshere.pdf"}, {"href": "https://openresearch-repository.anu.edu.au/bitstream/1885/244051/3/01_Lindenmayer_Non-target_impacts_of_weed_2017.pdf.jpg"}, {"href": "https://doi.org/10.1002/ecs2.1804"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ecs2.1804", "name": "item", "description": "10.1002/ecs2.1804", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ecs2.1804"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-05-01T00:00:00Z"}}, {"id": "10.1002/jsfa.7302", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:02Z", "type": "Journal Article", "created": "2015-06-10", "title": "Long-Term Impacts Of Grazing Intensity On Soil Carbon Sequestration And Selected Soil Properties In The Arid Eastern Cape, South Africa", "description": "AbstractBACKGROUNDLittle is known about how basic soil properties respond to contrasting grazing intensities in the Karoo biome, South Africa. The aim of this study was to investigate impacts of long\uffe2\uff80\uff90term (>75 years) grazing at 1.18 heads ha\uffe2\uff88\uff921 (heavy; CGH), 0.78 heads ha\uffe2\uff88\uff921 (light; CGL), and exclosure on selected soil properties. Soil samples were collected to a depth of 60 cm from the long\uffe2\uff80\uff90term experimental site of Grootfontein Agricultural Development Institute, Eastern Cape. The samples were analyzed for C, N, bulk density and infiltration rate, among others.
RESULTSGenerally, heavy and light grazing reduced soil N storage by 27.5% and 22.6%, respectively, compared with the exclosure. Animal exclusion improved water infiltration rate and C stocks significantly (P < 0.05), which was 0.128, 0.097, and 0.093 Mg ha\uffe2\uff88\uff921 yr\uffe2\uff88\uff921 for exclosure, CGL and CGH, respectively. Soil penetration resistance was higher for grazing treatments in the top 3\uffe2\uff80\uff937 cm soil layer but for exclosure at the top 1 cm soil surface.
CONCLUSIONAlthough livestock exclusion has the potential to improve C sequestration, a sufficient resting period for 1\uffe2\uff80\uff932 years followed by three consecutive grazing years at light stocking rate would be ideal for sustainable livestock production in this arid region of South Africa. \uffc2\uffa9 2015 Society of Chemical Industry
", "keywords": ["570", "Livestock", "Time Factors", "Nitrogen", "[SDV]Life Sciences [q-bio]", "continuous grazing", "01 natural sciences", "630", "nitrogen", "Soil", "South Africa", "arid lands", "Animals", "exclosure", "Ecosystem", "0105 earth and related environmental sciences", "2. Zero hunger", "carbon", "Feeding Behavior", "04 agricultural and veterinary sciences", "Plants", "15. Life on land", "Carbon", "6. Clean water", "[SDV] Life Sciences [q-bio]", "soil properties", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://doi.org/10.1002/jsfa.7302"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20the%20Science%20of%20Food%20and%20Agriculture", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/jsfa.7302", "name": "item", "description": "10.1002/jsfa.7302", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/jsfa.7302"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-07-03T00:00:00Z"}}, {"id": "10.1007/978-3-031-12176-0_11", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:07Z", "type": "Report", "created": "2022-11-28", "title": "Integrating X-ray CT Data into Models", "description": "Open AccessXP is a Mar\u00eda Zambrano Fellow at the Public University of Navarra (UPNA) and acknowledges funding from the European Union - NextGenerationEU through the Spanish program 'Ayuda para la Recualificaci\u00f3n del Sistema Universitario Espa\u00f1ol'. AE acknowledges funding from Swiss National Science Foundation: Grants P2EZP2 175128 and P400PB_186751. TR was funded by ERC Consolidator grant 646809 DIMR.", "keywords": ["2. Zero hunger", "570", "550", "X-Ray computed tomography", "[INFO.INFO-MO] Computer Science [cs]/Modeling and Simulation", "Soil properties", "[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study", "15. Life on land", "[SDV.SA.SDS] Life Sciences [q-bio]/Agricultural sciences/Soil study", "[INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation", "6. Clean water"], "contacts": [{"organization": "Portell, Xavier, Pot, Valerie, Ebrahimi, Ali, Monga, Olivier, Roose, Tiina,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/978-3-031-12176-0_11"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/978-3-031-12176-0_11", "name": "item", "description": "10.1007/978-3-031-12176-0_11", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/978-3-031-12176-0_11"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-01T00:00:00Z"}}, {"id": "10.1002/sae2.12006", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:14:05Z", "type": "Journal Article", "created": "2021-11-15", "title": "Effects of microplastics on crop nutrition in fertile soils and interaction with arbuscular mycorrhizal fungi", "description": "AbstractIntroductionSoil microplastic (MP) pollution has emerged as a main factor of global change, but its effects on soil nutrient availability and uptake by crops (macro and micronutrients) are largely unknown. Arbuscular mycorrhizal fungi (AMF) are regulators of nutrient availability and uptake and can interact with soil MP.
Materials and MethodsBuilding on previous studies, here we explored in a 50\uffe2\uff80\uff90days pot experiment the influence and interaction of MP fibres (0.4%) and commercial AMF in soil and onion chemistry, that is, in elemental composition of onion shoots and soils (C, N, Ca, Mg, K, P, S, Cu, Fe, Mn and Zn) and micronutrient soil availability (Cu, Fe, Mn and Zn).
ResultsMP had detrimental effects on K, Mg and S, but increased the soil availability of Zn and shoot uptake. AMF inoculation buffered the effects of MP by balancing/enhancing nutrient availability and plant uptake. Particularly, the commercial AMF inoculum remarkably enhanced Mn uptake by onion.
ConclusionOur results support the use of AMF to sustainably manage agricultural ecosystems contaminated with MP, buffering and counteracting the effects of MP by balancing nutrient availability and plant uptake.
", "keywords": ["2. Zero hunger", "570", "microplastics", "Agriculture (General)", "Microplastics", "macronutrients", "Qu\u00edmica", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water", "S1-972", "soil", "Environmental sciences", "Soil", "13. Climate action", "micronutrients", "0401 agriculture", " forestry", " and fisheries", "GE1-350", "Macronutrients", "Micronutrients", "Onion", "onion"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/sae2.12006"}, {"href": "https://doi.org/10.1002/sae2.12006"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Sustainable%20Agriculture%20and%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/sae2.12006", "name": "item", "description": "10.1002/sae2.12006", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/sae2.12006"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-11-15T00:00:00Z"}}, {"id": "10.1002/ldr.2466", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:03Z", "type": "Journal Article", "created": "2015-10-29", "title": "Carbon Sequestration In Restored Soils By Applying Organic Amendments", "description": "AbstractThe study of different natural carbon sinks has become especially important because of climate change effects. The restoration of contaminated areas can be an ideal strategy for carbon sequestration. The studied area was affected by toxic Aznalc\uffc3\uffb3llar mine spill in 1998. Restoration process of the contaminated area was based, mainly, on the use of two organic amendments: leonardite (LE) and biosolid compost (BC). The objective of this study was to verify whether the application of these amendments promotes the long\uffe2\uff80\uff90term carbon sequestration in this soil. Five treatments were established: untreated control, biosolid compost (doses 4 and 2) and leonardite (doses 4 and 2). The addition of amendments implied an improvement in soil quality that was directly related to the amendment dose: decrease in bulk density, increase in pH, higher respiration rates and an improvement in the stratification ratio. Dose\uffe2\uff80\uff90dependent changes in the molecular composition of soil organic matter were shown by nuclear magnetic resonance analysis. Both amendments promoted carbon retention, although because of the low mineralization rates of soil organic matter in LE treatments, the carbon storage was higher. The dosage effect on the carbon balance was more important in LE treatments, whereas in the BC treatments, the balance was similar for both doses. Our findings suggest that LE4 significantly increased the total organic carbon and it was the most suitable treatment for long\uffe2\uff80\uff90term carbon storage, because of its molecular composition rich in relatively stable aromatic and lignin\uffe2\uff80\uff90derived compounds. Copyright \uffc2\uffa9 2015 John Wiley & Sons, Ltd.
", "keywords": ["2. Zero hunger", "570", "trace element contaminated soil", "13C NMR", "[SDV]Life Sciences [q-bio]", "Trace element contaminated soil", "leonardite", "04 agricultural and veterinary sciences", "15. Life on land", "Biosolid compost", "6. Clean water", "[SDV] Life Sciences [q-bio]", "13. Climate action", "biosolid compost", "C sequestration", "0401 agriculture", " forestry", " and fisheries", "C-13 NMR", "Leonardite"]}, "links": [{"href": "https://doi.org/10.1002/ldr.2466"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Land%20Degradation%20%26amp%3B%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ldr.2466", "name": "item", "description": "10.1002/ldr.2466", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ldr.2466"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-12-29T00:00:00Z"}}, {"id": "10.1002/sae2.12031", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:05Z", "type": "Journal Article", "created": "2022-11-12", "title": "Frontiers in soil ecology\u2014Insights from the World Biodiversity Forum 2022", "description": "AbstractGlobal change is affecting soil biodiversity and functioning across all terrestrial ecosystems. Still, much is unknown about how soil biodiversity and function will change in the future in response to simultaneous alterations in climate and land use, as well as other environmental drivers. It is crucial to understand the direct, indirect\uffc2\uffa0and interactive effects of global change drivers on soil communities and ecosystems across environmental contexts, not only today but also in the near future. This is particularly relevant for international efforts to tackle climate change like the Paris Agreement, and considering the failure to achieve the 2020 biodiversity targets, especially the target of halting soil degradation. Here, we outline the main frontiers related to soil ecology that were presented and discussed at the thematic sessions of the World Biodiversity Forum 2022 in Davos, Switzerland. We highlight multiple frontiers of knowledge associated with data integration, causal inference, soil biodiversity and function scenarios, critical soil biodiversity facets, underrepresented drivers, global collaboration, knowledge application and transdisciplinarity, as well as policy and public communication. These identified research priorities are not only of immediate interest to the scientific community but may also be considered in research priority programmes and calls for funding.Rangeland-based livestock production constitutes a primary source of livelihood for many inhabitants of dryland regions. Their subsistence relies heavily on maintaining the productivity, biodiversity and services of these ecosystems. Harsh environmental conditions (e.g., drought) combined with land use intensification (e.g., overgrazing) make dryland ecosystems vulnerable and prone to degradation. However, the interplay between livestock grazing intensity and aridity conditions in driving the conservation and nutritional value of forage in arid and semi-arid rangelands is still not fully understood. In this study, we performed structural equation models (SEM) to assess the simultaneous direct and indirect effects of livestock grazing intensity and aridity level on community structure, diversity, biomass, forage production, forage C:N ratio and forage fiber composition in two semi-arid Mediterranean rangelands, NE Spain. Not surprisingly, we found that higher livestock grazing intensity led to lower community plant cover, especially when combined with higher aridity. However, both increasing grazing intensity and aridity were associated with higher forage production after one year of grazing exclusion. We did not find any adverse effect of livestock grazing on plant diversity, although plant species composition differed among grazing intensity levels. On the other hand, we found an aridity-driven trade-off in regard of the nutritional value of forage. Specifically, higher aridity was associated with a decrease in the least digestible fiber fraction (i.e., lignin) and an increase in forage C:N ratio. More interestingly, we found that livestock grazing modulated this trade-off by improving the overall forage nutritional value. Altogether, our results provide further insights into the management of semi-arid Mediterranean rangelands, pointing out that maintaining traditional rangeland-based livestock production may be a sustainable option as long as rangeland conservation (e.g., community plant cover) is not severely compromised.We collated and synthesized previous studies that reported the impacts of microplastics on soil parameters. The data were classified and integrated to screen for the proportion of significant effects, then we suggest several directions to alleviate the current data limitation in future experiments. We compiled 106 datasets capturing significant effects, which were analyzed in detail. We found that polyethylene and pellets (or powders) were the most frequently used microplastic composition and shape for soil experiments. The significant effects mainly occurred in broad size ranges (0.1\uffe2\uff80\uff931 mm) at test concentrations of 0.1%\uffe2\uff80\uff9310% based on soil dry weight. Polyvinyl chloride and film induced significant effects at lower concentrations compared to other compositions and shapes, respectively. We adopted a species sensitivity distribution (SSD) and soil property effect distribution (SPED) method using available data from soil biota, and for soil properties and enzymes deemed relevant for microplastic management. The predicted-no-effect-concentration (PNEC)-like values needed to protect 95% of soil biota and soil properties was estimated to be between 520 and 655 mg kg\uffe2\uff88\uff921. This study was the first to screen microplastic levels with a view toward protecting the soil system. Our results should be regularly updated (e.g., quarterly) with additional data as they become available.
", "keywords": ["Significant effect", "2. Zero hunger", "570", "Soil", "Species sensitivity distribution", "0211 other engineering and technologies", "Soil ; Significant effect ; Soil properties ; Microplastics in agroecosystems ; Species sensitivity distribution ; Research Article", "Soil properties", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie", "02 engineering and technology", "15. Life on land", "01 natural sciences", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1007/s42832-021-0077-3.pdf"}, {"href": "https://doi.org/10.1007/s42832-021-0077-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s42832-021-0077-3", "name": "item", "description": "10.1007/s42832-021-0077-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s42832-021-0077-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-13T00:00:00Z"}}, {"id": "10.1007/s00374-011-0539-3", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:21Z", "type": "Journal Article", "created": "2011-01-18", "title": "Effects Of Organic And Inorganic Fertilization On Soil Bacterial And Fungal Microbial Diversity In The Kabete Long-Term Trial, Kenya", "description": "The effects of crop manure and inorganic fertilizers on composition of microbial communities of central high land soils of Kenya are poorly known. For this reason, we have carried out a thirty-two-year-old long-term trial in Kabete, Kenya. These soils were treated with organic (maize stover (MS) at 10 t ha\u22121, farmyard manure (FYM) at 10 t ha\u22121) and inorganic fertilizers 120 kg N, 52.8 kg P (N2P2), N2P2 + MS, N2P2 + FYM, a control, and a fallow for over 30 years. We examined 16S rRNA gene and 28S rRNA gene fingerprints of bacterial and fungal diversity by PCR amplification and denaturing gradient gel electrophoresis separation, respectively. The PCR bacterial community structure and diversity were negatively affected by N2P2 and were more closely related to the bacterial structure in the soils without any addition (control) than that of soils with a combination of inorganic and organic or inorganic fertilizers alone. The effect on fungal diversity by N2P2 was different than the effect on bacterial diversity since the fungal diversity was similar to that of the N2P2 + FYM and N2P2 + MS-treated. However, soils treated with organic inputs clustered away from soils amended with inorganic inputs. Organic inputs had a positive effect on both bacterial and fungal diversity with or without chemical fertilizers. Results from this study suggested that total diversity of bacterial and fungal communities was closely related to agro-ecosystem management practices and may partially explain the yield differences observed between the different treatments.", "keywords": ["[SDV.SA]Life Sciences [q-bio]/Agricultural sciences", "Microbial diversity", "soil microorganisms", "engrais organique", "http://aims.fao.org/aos/agrovoc/c_27870", "Organic and inorganic amendments", "F08 - Syst\u00e8mes et modes de culture", "rendement des cultures", "630", "fertilisation", "biodiversit\u00e9", "http://aims.fao.org/aos/agrovoc/c_4592", "http://aims.fao.org/aos/agrovoc/c_36669", "http://aims.fao.org/aos/agrovoc/c_2018", "inorganic fertilizers", "http://aims.fao.org/aos/agrovoc/c_10795", "http://aims.fao.org/aos/agrovoc/c_34326", "fertility", "2. Zero hunger", "[SDV.SA] Life Sciences [q-bio]/Agricultural sciences", "http://aims.fao.org/aos/agrovoc/c_33949", "g\u00e9n\u00e9tique des populations", "04 agricultural and veterinary sciences", "agro\u00e9cosyst\u00e8me", "6. Clean water", "fertilit\u00e9 du sol", "PCR", "http://aims.fao.org/aos/agrovoc/c_34079", "polymerization", "community structure", "abonos inorg\u00e1nicos", "management", "570", "http://aims.fao.org/aos/agrovoc/c_7170", "http://aims.fao.org/aos/agrovoc/c_7172", "flore microbienne", "soil", "http://aims.fao.org/aos/agrovoc/c_36167", "micro-organisme du sol", "http://aims.fao.org/aos/agrovoc/c_10176", "organic fertilizers", "abonos org\u00e1nicos", "pratique culturale", "microorganismos del suelo", "suelo", "flore du sol", "P35 - Fertilit\u00e9 du sol", "P34 - Biologie du sol", "polimerizaci\u00f3n", "15. Life on land", "engrais min\u00e9ral", "http://aims.fao.org/aos/agrovoc/c_16367", "http://aims.fao.org/aos/agrovoc/c_4086", "0401 agriculture", " forestry", " and fisheries", "F04 - Fertilisation"]}, "links": [{"href": "https://doi.org/10.1007/s00374-011-0539-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biology%20and%20Fertility%20of%20Soils", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00374-011-0539-3", "name": "item", "description": "10.1007/s00374-011-0539-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00374-011-0539-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-01-19T00:00:00Z"}}, {"id": "10.1007/s00374-011-0658-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:21Z", "type": "Journal Article", "created": "2012-01-16", "title": "Impact On C And N Dynamics Of Simultaneous Application Of Pig Slurry And Wheat Straw, As Affected By Their Initial Locations In Soil", "description": "The joint management of animal manures and plant biomass as straw on agricultural soils may be a viable option for reducing the environmental impacts associated with livestock production and recycling nutrients efficiently. To investigate this option, an incubation in controlled conditions examined how the simultaneous addition of 15N-labeled pig slurry and 13C-labeled wheat straw, either on the soil surface or incorporated into the soil, affected the mineralization of C from the organic materials and the soil N dynamics. Samples from a typic hapludalf were incubated for 95 days at 25\u00b0C with eight treatments: unamended soil (S), wheat straw left on the soil surface (Ws), wheat straw incorporated in the soil (Wi), pig slurry on the soil surface (Ps), pig slurry incorporated in the soil (Pi) and three combinations of the two amendments: Pi + Ws, Pi + Wi, and Ws + Ps. Carbon dioxide and 13CO2 emissions and soil N content were measured throughout the incubation. Pig slurry stimulated the decomposition of straw C only when wheat straw and pig slurry were left together on the soil surface. Incorporation of both wheat straw and pig slurry did not modify straw C mineralization when compared to straw incorporation alone but this promoted a higher rate of N immobilization. The results suggest that when pig slurry is used in field under no-till conditions, the best strategy to preserve environmental quality with regard to CO2 emissions would be to apply pig slurry underneath the crop residues.", "keywords": ["2. Zero hunger", "570", "swine manure", "[SDV]Life Sciences [q-bio]", "Carbon mineralization", "straw", "04 agricultural and veterinary sciences", "15. Life on land", "630", "localization", "6. Clean water", "[SDV] Life Sciences [q-bio]", "land application", "13. Climate action", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://doi.org/10.1007/s00374-011-0658-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biology%20and%20Fertility%20of%20Soils", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00374-011-0658-x", "name": "item", "description": "10.1007/s00374-011-0658-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00374-011-0658-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-01-17T00:00:00Z"}}, {"id": "10.1007/s00374-012-0686-1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:21Z", "type": "Journal Article", "created": "2012-04-24", "title": "Effects Of Warming And Increased Precipitation On Soil Carbon Mineralization In An Inner Mongolian Grassland After 6\u00a0Years Of Treatments", "description": "Understanding the responses of soil C mineralization to climate change is critical for evaluating soil C cycling in future climatic scenarios. Here, we took advantage of a multifactor experiment to investigate the individual and combined effects of experimental warming and increased precipitation on soil C mineralization and 13C and 15N natural abundances at two soil depths (0\u201310 and 10\u201320\u00a0cm) in a semiarid Inner Mongolian grassland since April 2005. For each soil sample, we calculated potentially mineralizable organic C (C 0) from cumulative CO2-C evolved as indicators for labile organic C. The experimental warming significantly decreased soil C mineralization and C 0 at the 10\u201320-cm depth (P\u2009<\u20090.05). Increased precipitation, however, significantly increased soil pH, NO 3 \u2212 -N content, soil C mineralization, and C 0 at the 0\u201310-cm depth and moisture and NO 3 \u2212 -N content at the 10\u201320-cm depth (all P\u2009<\u20090.05), while significantly decreased exchangeable NH 4 + -N content and 13C natural abundances at the two depths (both P\u2009<\u20090.05). There were significant warming and increased precipitation interactions on soil C mineralization and C 0, indicating that multifactor interactions should be taken into account in future climatic scenarios. Significantly negative correlations were found between soil C mineralization, C 0, and 13C natural abundances across the treatments (both P\u2009<\u20090.05), implying more plant-derived C input into the soils under increased precipitation. Overall, our results showed that experimental warming and increased precipitation exerted different influences on soil C mineralization, which may have significant implications for C cycling in response to climate change in semiarid and arid regions.", "keywords": ["Environmental sciences", "2. Zero hunger", "Biological sciences", "Agricultural", "570", "veterinary and food sciences", "13. Climate action", "Carbon sequestration science", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "630"]}, "links": [{"href": "https://doi.org/10.1007/s00374-012-0686-1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biology%20and%20Fertility%20of%20Soils", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00374-012-0686-1", "name": "item", "description": "10.1007/s00374-012-0686-1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00374-012-0686-1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-04-25T00:00:00Z"}}, {"id": "10.1007/s00374-016-1171-z", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:22Z", "type": "Journal Article", "created": "2016-12-30", "title": "Altered Precipitation Seasonality Impacts The Dominant Fungal But Rare Bacterial Taxa In Subtropical Forest Soils", "description": "How soil microbial communities respond to precipitation seasonality change remains poorly understood, particularly for warm-humid forest ecosystems experiencing clear dry-wet cycles. We conducted a field precipitation manipulation experiment in a subtropical forest to explore the impacts of reducing dry-season rainfall but increasing wet-season rainfall on soil microbial community composition and enzyme activities. A 67% reduction of throughfall during the dry season decreased soil water content (SWC) by 17\u201324% (P\u00a0<\u00a00.05), while the addition of water during the wet season had limited impacts on SWC. The seasonal precipitation redistribution had no significant effect on the microbial biomass and enzyme activities, as well as on the community composition measured with phospholipid fatty acids (PLFAs). However, the amplicon sequencing revealed differentiated impacts on bacterial and fungal communities. The dry-season throughfall reduction increased the relative abundance of rare bacterial phyla (Gemmatimonadetes, Armatimonadetes, and Baoacteriodetes) that together accounted for only 1.5% of the total bacterial abundance by 15.8, 40, and 24% (P\u00a0<\u00a00.05), respectively. This treatment also altered the relative abundance of the two dominant fungal phyla (Basidiomycota and Ascomycota) that together accounted for 72.4% of the total fungal abundance. It increased the relative abundance of Basidiomycota by 27.4% while reduced that of Ascomycota by 32.6% (P\u00a0<\u00a00.05). Our results indicate that changes in precipitation seasonality can affect soil microbial community composition at lower taxon levels. The lack of community-level responses may be ascribed to the compositional adjustment among taxonomic groups and the confounding effects of other soil physicochemical variables such as temperature and substrate availability.", "keywords": ["[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "0301 basic medicine", "570", "[SDV.EE] Life Sciences [q-bio]/Ecology", " environment", "0303 health sciences", "03 medical and health sciences", "13. Climate action", "[SDV.EE]Life Sciences [q-bio]/Ecology", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "15. Life on land", "environment"]}, "links": [{"href": "https://doi.org/10.1007/s00374-016-1171-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biology%20and%20Fertility%20of%20Soils", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00374-016-1171-z", "name": "item", "description": "10.1007/s00374-016-1171-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00374-016-1171-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-12-30T00:00:00Z"}}, {"id": "10.1016/j.agee.2011.11.018", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:15:11Z", "type": "Journal Article", "created": "2011-12-29", "title": "Changes In Carbon Stock And Greenhouse Gas Balance In A Coffee (Coffea Arabica) Monoculture Versus An Agroforestry System With Inga Densiflora, In Costa Rica", "description": "Agroforestry represents an opportunity to reduce CO2 concentrations in the atmosphere by increasing carbon (C) stocks in agricultural lands. Agroforestry practices may also promote mineral N fertilization and the use of N2-fixing legumes that favor the emission of non-CO2 greenhouse gases (GHG) (N2O and CH4). The present study evaluates the net GHG balance in two adjacent coffee plantations, both highly fertilized (250 kg N ha-1 year-1): a monoculture (CM) and a culture shaded by the N2-fixing legume tree species Inga densiflora (CIn). C stocks, soil N2O emissions and CH4 uptakes were measured during the first cycle of both plantations. During a 3-year period (6-9 years after the establishment of the systems), soil C in the upper 10 cm remained constant in the CIn plantation (+0.09 \u00b1 0.58 Mg C ha-1 year-1) and decreased slightly but not significantly in the CM plantation (-0.43 \u00b1 0.53 Mg C ha-1 year-1). Aboveground carbon stocks in the coffee monoculture and the agroforestry system amounted to 9.8 \u00b1 0.4 and 25.2 \u00b1 0.6 Mg C ha-1, respectively, at 7 years after establishment. C storage rate in the phytomass was more than twice as large in the CIn compared to the CM system (4.6 \u00b1 0.1 and 2.0 \u00b1 0.1 Mg C ha-1 year-1, respectively). Annual soil N2O emissions were 1.3 times larger in the CIn than in the CM plantation (5.8 \u00b1 0.5 and 4.3 \u00b1 0.3 kg N-N2O ha-1 year-1, respectively). The net GHG balance at the soil scale calculated from the changes in soil C stocks and N2O emissions, expressed in CO2 equivalent, was negative in both coffee plantations indicating that the soil was a net source of GHG. Nevertheless this balance was in favor of the agroforestry system. The net GHG balance at the plantation scale, which includes additionally C storage in the phytomass, was positive and about 4 times larger in the CIn (14.59 \u00b1 2.20 Mg CO2 eq ha-1 year-1) than in the CM plantation (3.83 \u00b1 1.98 Mg CO2 eq ha-1 year-1). Thus converting the coffee monoculture to the coffee agroforestry plantation shaded by the N2-fixing tree species I. densiflora would increase net atmospheric GHG removals by 10.76 \u00b1 2.96 Mg CO2 eq ha-1 year-1 during the first cycle of 8-9 years.", "keywords": ["P33 - Chimie et physique du sol", "570", "571", "[SDV]Life Sciences [q-bio]", "F08 - Syst\u00e8mes et modes de culture", "http://aims.fao.org/aos/agrovoc/c_1920", "stockage", "Funders: EU CASCA project", "http://aims.fao.org/aos/agrovoc/c_24345", "01 natural sciences", "630", "agroforestry", "leguminous tree", "soil organic matter", "http://aims.fao.org/aos/agrovoc/c_7427", "andosol", "gaz \u00e0 effet de serre", "http://aims.fao.org/aos/agrovoc/c_1721", "http://aims.fao.org/aos/agrovoc/c_34841", "http://aims.fao.org/aos/agrovoc/c_1666", "http://aims.fao.org/aos/agrovoc/c_1301", "Inga", "syst\u00e8me de culture", "http://aims.fao.org/aos/agrovoc/c_35657", "0105 earth and related environmental sciences", "agroforesterie", "2. Zero hunger", "changement climatique", "Coffea arabica", "04 agricultural and veterinary sciences", "15. Life on land", "carbon sequestration", "http://aims.fao.org/aos/agrovoc/c_331583", "http://aims.fao.org/aos/agrovoc/c_207", "K10 - Production foresti\u00e8re", "http://aims.fao.org/aos/agrovoc/c_404", "[SDV] Life Sciences [q-bio]", "s\u00e9questration du carbone", "climate change", "13. Climate action", "global warming potential", "0401 agriculture", " forestry", " and fisheries", "P01 - Conservation de la nature et ressources fonci\u00e8res", "carbone", "http://aims.fao.org/aos/agrovoc/c_1971", "central america", "Andosol", "mati\u00e8re organique du sol"]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2011.11.018"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2011.11.018", "name": "item", "description": "10.1016/j.agee.2011.11.018", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2011.11.018"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-02-01T00:00:00Z"}}, {"id": "10.1016/j.agee.2013.04.013", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:15:12Z", "type": "Journal Article", "created": "2013-05-16", "title": "Carbon Stocks And Cocoa Yields In Agroforestry Systems Of Central America", "description": "Abstract The cocoa tree (Theobroma cacao L.) is cultivated typically in agroforestry systems in close association with a rich list of tree species and other useful plants on the same plot. Cocoa based agroforestry systems are credited for stocking significant amounts of carbon and hence have the potential to mitigate climate change. Since cocoa yields decrease non-linearly with increasing shade, a need is to design optimal cocoa agroforestry systems with high yields and high carbon stocks. We estimated the carbon stocked in a network of 229 permanent sample plots in cacao-based agroforestry systems and natural forests in five Central American countries. Carbon stocks were fractioned by both system compartments (aboveground, roots, soil, litter, dead wood \u2013 fine and coarse, and total) and tree use/form (cocoa, timber, fruit, bananas, shade and ornamentals, and palms). Cocoa plantations were assigned to a five-class typology and tested for independence with growing region using contingency analysis. Most Central American cocoa plantations had mixed or productive shade canopies. Only 4% of cocoa plantations were full sun or rustic (cocoa under thinned natural forest). Cocoa tree density was low (548\u00a0\u00b1\u00a0192\u00a0trees\u00a0ha\u22121). Total carbon (soil\u00a0+\u00a0biomass\u00a0+\u00a0dead biomass) was 117\u00a0\u00b1\u00a047\u00a0Mg\u00a0ha\u22121, with 51\u00a0Mg\u00a0ha\u22121 in the soil and 49\u00a0Mg\u00a0ha\u22121 (42% of total carbon) in aboveground biomass (cocoa and canopy trees). Cocoa trees accumulated 9\u00a0Mg\u00a0C\u00a0ha\u22121 (18% of carbon in aboveground biomass). Timber and fruit trees stored 65% of aboveground carbon. The annual rate of accumulation of carbon in aboveground biomass ranged between 1.3 and 2.6\u00a0Mg\u00a0C\u00a0ha\u22121\u00a0y\u22121. Trade-offs between carbon levels and yields were explored qualitatively using functional relationships documented in the scientific and technical literature, and expert knowledge. We argue that it is possible to design cocoa-based AFS with good yields (cocoa and shade canopy) and high carbon stock levels. The botanical composition of the shade canopy provides a large set of morphological and functional traits that can be used to optimize shade canopy design. Our results offer Central American cocoa producers a rigorous estimate of carbon stocks in their cocoa plantations. This knowledge may help them to certify and sell their cocoa, timber, fruits and other goods to niche markets with good prices. Our results will also assist governments and the private sector in (i) designing better legal, institutional and policy frameworks, local and national, promoting an agriculture with trees and (ii) contributing to the development of the national monitoring, reporting and verification systems required by the international community to access funding and payment for ecosystem services.", "keywords": ["0106 biological sciences", "certification", "F08 - Syst\u00e8mes et modes de culture", "rendement des cultures", "http://aims.fao.org/aos/agrovoc/c_1920", "stockage", "01 natural sciences", "http://aims.fao.org/aos/agrovoc/c_10176", "http://aims.fao.org/aos/agrovoc/c_5524", "http://aims.fao.org/aos/agrovoc/c_7427", "K01 - Foresterie - Consid\u00e9rations g\u00e9n\u00e9rales", "biomasse", "Theobroma cacao", "service", "http://aims.fao.org/aos/agrovoc/c_1666", "http://aims.fao.org/aos/agrovoc/c_1301", "plante d'ombrage", "agroforesterie", "2. Zero hunger", "changement climatique", "http://aims.fao.org/aos/agrovoc/c_3418", "04 agricultural and veterinary sciences", "15. Life on land", "http://aims.fao.org/aos/agrovoc/c_331583", "http://aims.fao.org/aos/agrovoc/c_207", "K10 - Production foresti\u00e8re", "s\u00e9questration du carbone", "http://aims.fao.org/aos/agrovoc/c_926", "http://aims.fao.org/aos/agrovoc/c_7019", "13. Climate action", "http://aims.fao.org/aos/agrovoc/c_7713", "marketing", "http://aims.fao.org/aos/agrovoc/c_6989", "http://aims.fao.org/aos/agrovoc/c_5171", "http://aims.fao.org/aos/agrovoc/c_1434", "0401 agriculture", " forestry", " and fisheries", "peuplement forestier", "P01 - Conservation de la nature et ressources fonci\u00e8res", "carbone", "caract\u00e9ristique du peuplement", "http://aims.fao.org/aos/agrovoc/c_4620", "http://aims.fao.org/aos/agrovoc/c_35702", "http://aims.fao.org/aos/agrovoc/c_34910", "http://aims.fao.org/aos/agrovoc/c_28080", "http://aims.fao.org/aos/agrovoc/c_3651"]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2013.04.013"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2013.04.013", "name": "item", "description": "10.1016/j.agee.2013.04.013", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2013.04.013"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-07-01T00:00:00Z"}}, {"id": "10.1007/s00425-017-2647-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:23Z", "type": "Journal Article", "created": "2017-01-04", "title": "The cost of surviving nitrogen excess: energy and protein demand in the lichen Cladonia portentosa as revealed by proteomic analysis", "description": "Different nitrogen forms affect different metabolic pathways in lichens. In particular, the most relevant changes in protein expression were observed in the fungal partner, with NO 3- mostly affecting the energetic metabolism and NH 4+ affecting transport and regulation of proteins and the energetic metabolism much more than NO 3- did. Excess deposition of reactive nitrogen is a well-known agent of stress for lichens, but which symbiont is most affected and how, remains a mystery. Using proteomics can expand our understanding of stress effects on lichens. We investigated the effects of different doses and forms of reactive nitrogen, with and without supplementary phosphorus and potassium, on the proteome of the lichen Cladonia portentosa growing in a 'real-world' simulation of nitrogen deposition. Protein expression changed with the nitrogen treatments but mostly in the fungal partner, with NO3- mainly affecting the energetic metabolism and NH4+ also affecting the protein synthesis machinery. The photobiont mainly responded overexpressing proteins involved in energy production. This suggests that in response to nitrogen stress, the photobiont mainly supports the defensive mechanisms initiated by the mycobiont with an increased energy production. Such surplus energy is then used by the cell to maintain functionality in the presence of NO3-, while a futile cycle of protein production can be hypothesized to be induced by NH4+ excess. External supply of potassium and phosphorus influenced differently the responses of particular enzymes, likely reflecting the many processes in which potassium exerts a regulatory function.", "keywords": ["Chlorophyll", "Proteomics", "0301 basic medicine", "570", "mycobiont", "Lichens", "Nitrogen", "Cell Respiration", "Nitrate", "Mass Spectrometry", "Molecular mechanism", "03 medical and health sciences", "nitrate", "Ammonia", "Electrophoresis", " Gel", " Two-Dimensional", "Photosynthesis", "Ammonium", " Molecular mechanism", " Mycobiont", " Nitrate", " Photobiont", " Stress response", "Ammonium; Molecular mechanism; Mycobiont; Nitrate; Photobiont; Stress response; Genetics; Plant Science", "0303 health sciences", "Nitrates", "Stress response", "Chlorophyll A", "stress response", "Mycobiont", "ammonium", "Photobiont", "photobiont", "molecular mechanism", "Energy Metabolism", "Ammonium"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s00425-017-2647-2.pdf"}, {"href": "https://doi.org/10.1007/s00425-017-2647-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Planta", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00425-017-2647-2", "name": "item", "description": "10.1007/s00425-017-2647-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00425-017-2647-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-01-04T00:00:00Z"}}, {"id": "10.1007/s00442-004-1540-4", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:24Z", "type": "Journal Article", "created": "2004-03-19", "title": "Feedback Interactions Between Needle Litter Decomposition And Rhizosphere Activity", "description": "The aim of our study was to identify interactions between the decomposition of aboveground litter and rhizosphere activity. The experimental approach combined the placement of labelled litter (delta13C=-37.9 per thousand ) with forest girdling in a 35-year-old Norway spruce stand, resulting in four different treatment combinations: GL (girdled, litter), GNL (girdled, no litter), NGL (not girdled, litter), and NGNL (not girdled, no litter). Monthly sampling of soil CO2 efflux and delta13C of soil respired CO2 between May and October 2002 allowed the partitioning of the flux into that derived from the labelled litter, and that derived from native soil organic matter and roots. The effect of forest girdling on soil CO2 efflux was detectable from June (girdling took place in April), and resulted in GNL fluxes to be about 50% of NGNL fluxes by late August. The presence of litter resulted in significantly increased fluxes for the first 2 months of the experiment, with significantly greater litter derived fluxes from non-girdled plots and a significant interaction between girdling and litter treatments over the same period. For NGL collars, the additional efflux was found to originate only in part from litter decomposition, but also from the decay of native soil organic matter. In GL collars, this priming effect was not significant, indicating an active role of the rhizosphere in soil priming. The results therefore indicate mutual positive feedbacks between litter decomposition and rhizosphere activity. Soil biological analysis (microbial and fungal biomass) of the organic layers indicated greatest activity below NGL collars, and we suppose that this increase indicates the mechanism of mutual positive feedback between rhizosphere activity and litter decomposition. However, elimination of fresh C input from both above- and belowground (GNL) also resulted in greater fungal abundance than for the NGNL treatment, indicating likely changes in fungal community structure (i.e. a shift from symbiotic to saprotrophic species abundance).", "keywords": ["570", "Soil ecology", "Microbial biomass", "Models", " Biological", "630", "Soil", "Biomass", "Picea", "Forest girdling; Microbial biomass; Soil CO; 2; efflux; Soil organic matter; Stable C isotopes;", "Ecosystem", "Soil Microbiology", "Soil CO2 efflux", "Feedback", " Physiological", "Soil organic matter", "Carbon Isotopes", "Fungi", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "Microbial growth", "Stable C isotopes", "Plant Leaves", "13. Climate action", "Soils", "0401 agriculture", " forestry", " and fisheries", "Forest girdling", "Seasons"]}, "links": [{"href": "https://doi.org/10.1007/s00442-004-1540-4"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-004-1540-4", "name": "item", "description": "10.1007/s00442-004-1540-4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-004-1540-4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-05-01T00:00:00Z"}}, {"id": "10.1007/s00442-006-0515-z", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:24Z", "type": "Journal Article", "created": "2006-08-23", "title": "Aboveground Productivity And Root-Shoot Allocation Differ Between Native And Introduced Grass Species", "description": "Plant species in grasslands are often separated into groups (C(4) and C(3) grasses, and forbs) with presumed links to ecosystem functioning. Each of these in turn can be separated into native and introduced (i.e., exotic) species. Although numerous studies have compared plant traits between the traditional groups of grasses and forbs, fewer have compared native versus introduced species. Introduced grass species, which were often introduced to prevent erosion or to improve grazing opportunities, have become common or even dominant species in grasslands. By virtue of their abundances, introduced species may alter ecosystems if they differ from natives in growth and allocation patterns. Introduced grasses were probably selected nonrandomly from the source population for forage (aboveground) productivity. Based on this expectation, aboveground production is predicted to be greater and root mass fraction to be smaller in introduced than native species. We compared root and shoot distribution and tissue quality between introduced and native C(4) grass species in the Blackland Prairie region of Central Texas, USA, and then compared differences to the more well-studied divergence between C(4) grasses and forbs. Comparisons were made in experimental monocultures planted with equal-sized transplants on a common soil type and at the same density. Aboveground productivity and C:N ratios were higher, on average, in native grasses than in native forbs, as expected. Native and introduced grasses had comparable amounts of shallow root biomass and tissue C:N ratios. However, aboveground productivity and total N were lower and deep root biomass and root mass fraction were greater in native than introduced grasses. These differences in average biomass distribution and N could be important to ecosystems in cases where native and introduced grasses have been exchanged. Our results indicate that native-introduced status may be important when interpreting species effects on grassland processes like productivity and plant N accumulation.", "keywords": ["580", "0106 biological sciences", "2. Zero hunger", "570", "Invasive species", "Nitrogen", "Exotic species", "Root biomass", "04 agricultural and veterinary sciences", "15. Life on land", "Poaceae", "Texas", "Plant Roots", "01 natural sciences", "Carbon", "Introduced species", "Grasslands", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Agricultural Science", "Tallgrass prairie", "Ecosystem", "Plant Shoots"]}, "links": [{"href": "https://doi.org/10.1007/s00442-006-0515-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-006-0515-z", "name": "item", "description": "10.1007/s00442-006-0515-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-006-0515-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-08-23T00:00:00Z"}}, {"id": "10.1007/s00442-012-2578-3", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:25Z", "type": "Journal Article", "created": "2013-01-07", "title": "Effects Of Drought And N-Fertilization On N Cycling In Two Grassland Soils", "description": "Open AccessOecologia, 171 (3)", "keywords": ["[SDE] Environmental Sciences", "N2O fluxes", "550", "functional genes", "Nitrogen", "[SDV]Life Sciences [q-bio]", "Climate", "Climate Change", "Nitrification and denitrification", "enzyme activites", "Urine", "630", "10127 Institute of Evolutionary Biology and Environmental Studies", "Soil", "Quantitative PCR", "Climate change; Enzyme activities; Functional genes; Quantitative PCR; Nitrification and denitrification; N2O fluxes", "[SDV.BV]Life Sciences [q-bio]/Vegetal Biology", "Animals", "Climate change", "Enzyme activities", "[SDV.BV] Life Sciences [q-bio]/Vegetal Biology", "Ecosystem", "Soil Microbiology", "Functional genes", "Nitrogen Cycle", "Plants", "Archaea", "Droughts", "[SDV] Life Sciences [q-bio]", "1105 Ecology", " Evolution", " Behavior and Systematics", "climate change", "Genes", " Bacterial", "[SDE]Environmental Sciences", "quantitative PCR", "Denitrification", "570 Life sciences; biology", "590 Animals (Zoology)", "Cattle", "nitrification and denitrification"]}, "links": [{"href": "https://doi.org/10.1007/s00442-012-2578-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-012-2578-3", "name": "item", "description": "10.1007/s00442-012-2578-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-012-2578-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-01-08T00:00:00Z"}}, {"id": "10.1007/s00442-012-2331-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:25Z", "type": "Journal Article", "created": "2012-05-03", "title": "Legacy Effects Of Drought On Plant Growth And The Soil Food Web", "description": "Soils deliver important ecosystem services, such as nutrient provision for plants and the storage of carbon (C) and nitrogen (N), which are greatly impacted by drought. Both plants and soil biota affect soil C and N availability, which might in turn affect their response to drought, offering the potential to feed back on each other's performance. In a greenhouse experiment, we compared legacy effects of repeated drought on plant growth and the soil food web in two contrasting land-use systems: extensively managed grassland, rich in C and with a fungal-based food web, and intensively managed wheat lower in C and with a bacterial-based food web. Moreover, we assessed the effect of plant presence on the recovery of the soil food web after drought. Drought legacy effects increased plant growth in both systems, and a plant strongly reduced N leaching. Fungi, bacteria, and their predators were more resilient after drought in the grassland soil than in the wheat soil. The presence of a plant strongly affected the composition of the soil food web, and alleviated the effects of drought for most trophic groups, regardless of the system. This effect was stronger for the bottom trophic levels, whose resilience was positively correlated to soil available C. Our results show that plant belowground inputs have the potential to affect the recovery of belowground communities after drought, with implications for the functions they perform, such as C and N cycling.", "keywords": ["0106 biological sciences", "570", "Food Chain", "Nematoda", "Nitrogen", "577", "Biological Availability", "Plant Development", "Poaceae", "01 natural sciences", "Soil fauna", "Soil", "Animals", "Herbivory", "Ecosystem", "Soil Microbiology", "Triticum", "2. Zero hunger", "Bacteria", "Fungi", "Nitrogen Cycle", "Plants", "15. Life on land", "Carbon", "6. Clean water", "Droughts", "England", "13. Climate action", "Wheat"]}, "links": [{"href": "https://doi.org/10.1007/s00442-012-2331-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-012-2331-y", "name": "item", "description": "10.1007/s00442-012-2331-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-012-2331-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-05-04T00:00:00Z"}}, {"id": "10.1007/s00442-015-3543-8", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:25Z", "type": "Journal Article", "created": "2016-01-08", "title": "Coupled Long-Term Summer Warming And Deeper Snow Alters Species Composition And Stimulates Gross Primary Productivity In Tussock Tundra", "description": "Climate change is expected to increase summer temperature and winter precipitation throughout the Arctic. The long-term implications of these changes for plant species composition, plant function, and ecosystem processes are difficult to predict. We report on the influence of enhanced snow depth and warmer summer temperature following 20 years of an ITEX experimental manipulation at Toolik Lake, Alaska. Winter snow depth was increased using snow fences and warming was accomplished during summer using passive open-top chambers. One of the most important consequences of these experimental treatments was an increase in active layer depth and rate of thaw, which has led to deeper drainage and lower soil moisture content. Vegetation concomitantly shifted from a relatively wet system with high cover of the sedge Eriophorum vaginatum to a drier system, dominated by deciduous shrubs including Betula nana and Salix pulchra. At the individual plant level, we observed higher leaf nitrogen concentration associated with warmer temperatures and increased snow in S. pulchra and B. nana, but high leaf nitrogen concentration did not lead to higher rates of net photosynthesis. At the ecosystem level, we observed higher GPP and NEE in response to summer warming. Our results suggest that deeper snow has a cascading set of biophysical consequences that include a deeper active layer that leads to altered species composition, greater leaf nitrogen concentration, and higher ecosystem-level carbon uptake.", "keywords": ["0106 biological sciences", "570", "Nitrogen", "Climate Change", "Salix", "Biodiversity", "15. Life on land", "01 natural sciences", "Carbon Cycle", "Plant Leaves", "13. Climate action", "Snow", "Seasons", "Tundra", "Alaska", "Betula", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1007/s00442-015-3543-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-015-3543-8", "name": "item", "description": "10.1007/s00442-015-3543-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-015-3543-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-01-08T00:00:00Z"}}, {"id": "10.1007/s004680000062", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-26T16:14:26Z", "type": "Journal Article", "created": "2003-02-20", "title": "Biomass Allocation, Needle Structural Characteristics And Nutrient Composition In Scots Pine Seedlings Exposed To Elevated Co2 And O-3 Concentrations", "description": "Three-year-old Scots pine (Pinus sylvestris L.) seedlings were exposed to ambient or elevated ozone (O 3 ) (1.5\u00d7 ambient) and carbon dioxide (CO 2 ) (590 \u00b5mol mol -1 ) concentrations during two growing seasons in open-top field chambers (OTCs). Five different treat- ments were applied in the chambers: filtered air, ambient air, elevated O3, elevated CO2, and elevated O3 and CO2 combined. Ambient plots outside the OTCs were also in- cluded, but the chamber ambient was used as a control in O3 and CO2 treatments due to a significant chamber ef- fect. Increases in yellowing and chlorotic mottling of previous-year (C+1) needles and in the amount of cyto- plasmic ribosomes and electron density of the chloro- plast stroma in current-year (C) and C+1 needle meso- phyll cells were observed in elevated O 3 at both CO 2 concentrations. Elevated O3 alone caused a non-signifi- cant 10.9% decrease in plant total dry mass and a signifi- cant decrease in manganese (Mn) content of C needles. CO2 enrichment caused a significant increase in needle cross-sectional width after the first year of exposure, and an accumulation of starch and slight curling and swelling of the chloroplast thylakoids in the mesophyll tissue of C needles after the second year of exposure. Calcium and Mn contents were increased and copper and nitrogen contents were decreased, significantly, in CO 2-exposed needles. A non-significant 19.1% increase in plant total dry mass was measured in elevated CO 2 alone, whereas a 14.8% reduction in total dry mass, together with a signif- icant reduction in current-year main shoot length, was found in the combined treatment. Overall, in spite of de- creases in O3-induced visible injuries by CO 2, elevated CO 2 levels were not able to counteract the impact of O 3 in this experiment.", "keywords": ["hiilidioksidi", "0106 biological sciences", "570", "m\u00e4nty", "neulasrakenne", "kasvu", "otsoni", "01 natural sciences"], "contacts": [{"organization": "Utriainen, J., Janhunen, S., Helmisaari, H.-S., Holopainen, T.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s004680000062"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Trees", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s004680000062", "name": "item", "description": "10.1007/s004680000062", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s004680000062"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2000-08-01T00:00:00Z"}}, {"id": "10.1007/s00572-015-0655-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:26Z", "type": "Journal Article", "created": "2015-07-25", "title": "The Ectomycorrhizal Community Of Conifer Stands On Peat Soils 12 Years After Fertilization With Wood Ash", "description": "We studied long-term effects of fertilization with wood ash on biomass, vitality and mycorrhizal colonization of fine roots in three conifer forest stands growing in Vacciniosa turf. mel. (V), Myrtillosa turf. mel. (M) and Myrtillosa turf. mel./Caricoso-phragmitosa (MC) forest types on peat soils. Fertilization trials amounting 5 kg/m(2) of wood ash were established 12 years prior to this study. A total of 63 soil samples with roots were collected and analysed. Ectomycorrhizal (ECM) fungi in roots were identified by morphotyping and sequencing of the fungal internal transcribed spacer (ITS) region. In all forest types, fine root biomass was higher in fertilized plots than in control plots. In M forest type, proportion of living fine roots was greater in fertilized plots than in control plots, while in V and MC, the result was opposite. Fifty ECM species were identified, of which eight were common to both fertilized and control plots. Species richness and Shannon diversity index were generally higher in fertilized plots than in control plots. The most common species in fertilized plots were Amphinema byssoides (17.8%) and Tuber cf. anniae (12.2%), while in control plots, it was Tylospora asterophora (18.5%) and Lactarius tabidus (20.3%). Our results showed that forest fertilization with wood ash has long-lasting effect on diversity and composition of ECM fungal communities.", "keywords": ["0106 biological sciences", "570", "forest fertilization", "m\u00e4nty", "Molecular Sequence Data", "organic soils", "fine roots", "Plant Roots", "01 natural sciences", "630", "mets\u00e4nlannoitus", "Mycorrhizae", "ectomycorrhizae", "DNA", " Ribosomal Spacer", "Muut aihealueet", "DNA", " Fungal", "2. Zero hunger", "Picea abies", "Pinus sylvestris", "Sequence Analysis", " DNA", "04 agricultural and veterinary sciences", "15. Life on land", "Biota", "hienojuuret", "kuusi", "Tracheophyta", "eloper\u00e4iset maat", "0401 agriculture", " forestry", " and fisheries", "ektomykorritsa"]}, "links": [{"href": "https://doi.org/10.1007/s00572-015-0655-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Mycorrhiza", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00572-015-0655-2", "name": "item", "description": "10.1007/s00572-015-0655-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00572-015-0655-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-07-26T00:00:00Z"}}, {"id": "10.1016/j.agee.2014.04.006", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:15:13Z", "type": "Journal Article", "created": "2014-05-09", "title": "Comparative Analysis Of The Microbial Communities In Agricultural Soil Amended With Enhanced Biochars Or Traditional Fertilisers", "description": "(Uploaded by Plazi for the Bat Literature Project) No abstract provided.", "keywords": ["570", "anzsrc-for: 07 Agricultural and Veterinary Sciences", "bats", "Veterinary and Food Sciences", "anzsrc-for: 16 Studies in Human Society", "Carbon Sequestration Science", "bat", "30 Agricultural", "630", "anzsrc-for: 3004 Crop and Pasture Production", "anzsrc-for: 30 Agricultural", "Chiroptera", "Animalia", "2 Zero Hunger", "Chordata", "2. Zero hunger", "Soil Chemistry (excl. Carbon Sequestration Science)", "anzsrc-for: 44 Human society", "anzsrc-for: 05 Environmental Sciences", "Biodiversity", "04 agricultural and veterinary sciences", "15. Life on land", "3004 Crop and Pasture Production", "6. Clean water", "anzsrc-for: 41 Environmental sciences", "Soil chemistry and soil carbon sequestration (excl. carbon sequestration science)", "Mammalia", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2014.04.006"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2014.04.006", "name": "item", "description": "10.1016/j.agee.2014.04.006", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2014.04.006"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-06-01T00:00:00Z"}}, {"id": "10.1007/s10021-011-9491-1", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-26T16:14:29Z", "type": "Journal Article", "created": "2011-09-26", "title": "Regulation Of Microbial Community Composition And Activity By Soil Nutrient Availability, Soil Ph, And Herbivory In The Tundra", "description": "Soil nitrogen (N) availability and pH constitute major abiotic controls over microbial community composition and activity in tundra ecosystems. On the other hand, mammalian grazers form an important biotic factor influencing resource coupling between plants and soil microorganisms. To investigate individual effects and interactions among soil nutrients, pH, and grazing on tundra soils, we performed factorial treatments of fertilization, liming, and grazer exclusion in the field for 3\u00a0years at 2 contrasting tundra habitats, acidic (N-poor) and non-acidic (N-rich) tundra heaths. The effects of all treatments were small in the non-acidic tundra heaths. In the acidic tundra heaths, fertilization decreased the fungal:bacterial ratio as analyzed by soil PLFAs, but there were no effects of liming. Fertilization increased soil N concentrations more drastically in ungrazed than grazed plots, and in parallel, fertilization decreased the fungal:bacterial ratio to a greater extent in the ungrazed plots. Liming, on the other hand, partly negated the effects of fertilization on both soil N concentrations and PLFAs. Fertilization drastically increased the activity of phenol oxidase, a microbial enzyme synthesized for degradation of soil phenols, in grazed plots, but had no effect in ungrazed plots. Taken together, our results demonstrate that grazers have the potential to regulate the fungal:bacterial ratio in soils through influencing N availability for the soil microorganisms.", "keywords": ["2. Zero hunger", "0106 biological sciences", "0301 basic medicine", "570", "03 medical and health sciences", "tundra", "mikrobiaktiivisuus", "kasvinsy\u00f6j\u00e4t", "mikrobiyhteis\u00f6", "15. Life on land", "01 natural sciences"], "contacts": [{"organization": "Stark, S., Eskelinen, A., M\u00e4nnist\u00f6, M.K.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s10021-011-9491-1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecosystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s10021-011-9491-1", "name": "item", "description": "10.1007/s10021-011-9491-1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s10021-011-9491-1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-09-27T00:00:00Z"}}, {"id": "10.1007/s10021-010-9384-8", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:14:29Z", "type": "Journal Article", "created": "2010-09-29", "title": "Biotic And Abiotic Changes In Ecosystem Structure Over A Shrub-Encroachment Gradient In The Southwestern Usa", "description": "In this study, we investigate changes in ecosystem structure that occur over a gradient of land-degradation in the southwestern USA, where shrubs are encroaching into native grassland. We evaluate a conceptual model which posits that the development of biotic and abiotic structural connectivity is due to ecogeomorphic feedbacks. Three hypotheses are evaluated: 1. Over the shrub-encroachment gradient, the difference in soil properties under each surface-cover type will change non-linearly, becoming increasingly different; 2. There will be a reduction in vegetation cover and an increase in vegetation-patch size that is concurrent with an increase in the spatial heterogeneity of soil properties over the shrub-encroachment gradient; and 3. Over the shrub-encroachment gradient, the range at which soil properties are autocorrelated will progressively exceed the range at which vegetation is autocorrelated. Field-based monitoring of vegetation and soil properties was carried out over a shrub-encroachment gradient at the Sevilleta National Wildlife Refuge in New Mexico, USA. Results of this study show that vegetation cover decreases over the shrub-encroachment gradient, but vegetation-patch size increases, with a concurrent increase in the spatial heterogeneity of soil properties. Typically, there are significant differences in soil properties between non-vegetated and vegetated surfaces, but for grass and shrub patches, there are only significant differences for the biotic soil properties. Results suggest that it is the development of larger, well-connected, non-vegetated patches that is most important in driving the overall behavior of shrub-dominated sites. Results of this study support the hypothesis that feedbacks of functional connectivity reinforce the development of structural connectivity, which increases the resilience of the shrub-dominated state, and thus makes it harder for grasses to re-establish and reverse the vegetation change.", "keywords": ["2. Zero hunger", "0106 biological sciences", "570", "Ecohydrology", "Function - Land degradation.", "Structure", "910", "15. Life on land", "Grassland", "01 natural sciences", "Spatial autocorrelation", "Shrubland", "0105 earth and related environmental sciences"], "contacts": [{"organization": "Turnbull, Laura, Brazier, Richard E., Wainwright, John, Bol, Roland,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s10021-010-9384-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecosystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s10021-010-9384-8", "name": "item", "description": "10.1007/s10021-010-9384-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s10021-010-9384-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-09-30T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=570&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=570&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=570&", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=570&offset=50", "hreflang": "en-US"}], "numberMatched": 719, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-07-26T20:12:25.970244Z"}