{"type": "FeatureCollection", "features": [{"id": "10.1007/s13595-018-0690-1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:15:35Z", "type": "Journal Article", "created": "2018-01-31", "title": "Thinning Affects Microbial Biomass Without Changing Enzyme Activity In The Soil Of Pinus Densiflora Sieb. Et Zucc. Forests After 7 Years", "description": "AbstractKey messageThinning increased microbial biomass but did not alter enzyme activities in the soil ofPinus densifloraSieb. et Zucc. forests in South Korea. This effect of thinning was larger under a relatively heavy thinning intensity, but there was divergence in the magnitude between sites.ContextThe balance between microbial biomass accumulation and enzymatic C and N assimilation determines the level of bio-available C and N. However, the effects of thinning on these parameters remain contradictory and unconfirmed.AimsThe effects of thinning intensity on microbial biomass and enzyme activity were assessed in the soil of Pinus densiflora Sieb. et Zucc. forests in South Korea.MethodsUn-thinned control and 15 and 30% basal area thinning treatments were applied to two 51- to 60-year-old P. densiflora forests with different management histories, topographies, rainfall amounts, and soils. Seven years after thinning, microbial biomass and activities of N-acetyl-glucosaminidase, \u03b2-glucosidase, cellobiohydrolase, \u03b2-xylosidase, phenol oxidase, and peroxidase were measured before and after seasonally concentrated rains and at 0\u201310\u00a0cm depth.ResultsMicrobial biomass was generally highest under the 30% basal area thinning and lowest under the control, and was positively correlated to total soil C and N. The increase in microbial biomass was lower at the site displaying sandier, drier, and more acidic soils and retaining smaller amounts of thinning residue. Conversely, thinning had no significant effect on activities of all enzymes at both sites in both periods.ConclusionThinning can promote accumulation of microbial biomass without significant change in enzyme activities participating in the assimilation of C and N. This effect of thinning tended to increase with thinning intensity but differed in magnitude between sites.", "keywords": ["[SDV] Life Sciences [q-bio]", "0106 biological sciences", "2. Zero hunger", "Forest management", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "Soil microbes", "15. Life on land", "Enzyme assay", "01 natural sciences", "Korean red pine"]}, "links": [{"href": "https://doi.org/10.1007/s13595-018-0690-1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Annals%20of%20Forest%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s13595-018-0690-1", "name": "item", "description": "10.1007/s13595-018-0690-1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s13595-018-0690-1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-01-31T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2021.108357", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:17:17Z", "type": "Journal Article", "created": "2021-07-10", "title": "A critical perspective on interpreting amplicon sequencing data in soil ecological research", "description": "Abstract   Microbial community analysis via marker gene amplicon sequencing has become a routine method in the field of soil research. In this perspective, we discuss technical challenges and limitations of amplicon sequencing and present statistical and experimental approaches that can help addressing the spatio-temporal complexity of soil and the high diversity of organisms therein. We illustrate the impact of compositionality on the interpretation of relative abundance data and discuss effects of sample replication on the statistical power in soil community analysis. Additionally, we argue for the need of increased study reproducibility and data availability, as well as complementary techniques for generating deeper ecological insights into microbial roles and our understanding thereof in soil ecosystems. At this stage, we call upon researchers and specialized soil journals to consider the current state of data analysis, interpretation, and availability to improve the rigor of future studies.", "keywords": ["2. Zero hunger", "0301 basic medicine", "Soil microbial diversity", "0303 health sciences", "Soil metabarcoding", "DIVERSITY", "Ecology; Soil microbes; Amplicon sequencing", "Compositional data", "SCALE SPATIAL HETEROGENEITY", "15. Life on land", "BIOMASS", "03 medical and health sciences", "106026 \u00d6kosystemforschung", "Soil complexity", "CARBON-USE EFFICIENCY", "BACTERIA", "DNA EXTRACTION", "MICROORGANISMS", "MICROBIAL COMMUNITIES", "106026 Ecosystem research", "RIBOSOMAL-RNA", "Amplicon sequencing", "Soil microorganisms", "GENERATION"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2021.108357"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2021.108357", "name": "item", "description": "10.1016/j.soilbio.2021.108357", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2021.108357"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-09-01T00:00:00Z"}}, {"id": "10.1098/rspb.2023.1345", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:18:40Z", "type": "Journal Article", "created": "2023-11-15", "title": "Cessation of grazing causes biodiversity loss and homogenization of soil food webs", "description": "<p>             There is widespread concern that cessation of grazing in historically grazed ecosystems is causing biotic homogenization and biodiversity loss. We used 12 montane grassland sites along an 800 km north\uffe2\uff80\uff93south gradient across the UK, to test whether cessation of grazing affects local             \uffce\uffb1             - and             \uffce\uffb2             -diversity of below-ground food webs. We show cessation of grazing leads to strongly decreased             \uffce\uffb1             -diversity of most groups of soil microbes and fauna, particularly of relatively rare taxa. By contrast, the             \uffce\uffb2             -diversity varied between groups of soil organisms. While most soil microbial communities exhibited increased homogenization after cessation of grazing, we observed decreased homogenization for soil fauna after cessation of grazing. Overall, our results indicate that exclusion of domesticated herbivores from historically grazed montane grasslands has far-ranging negative consequences for diversity of below-ground food webs. This underscores the importance of grazers for maintaining the diversity of below-ground communities, which play a central role in ecosystem functioning.           </p", "keywords": ["2. Zero hunger", "570", "Global Change and Conservation", "Food Chain", "soil communities", "Microbiota", "land abandonment", "500", "Biodiversity", "15. Life on land", "Grassland", "biotic homogenization", "long-term experiments", "Soil", "soil microbes", "\u03b1-diversity", "Life Science", "grazing", "soil fauna"]}, "links": [{"href": "https://doi.org/10.1098/rspb.2023.1345"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rspb.2023.1345", "name": "item", "description": "10.1098/rspb.2023.1345", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rspb.2023.1345"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-07T00:00:00Z"}}, {"id": "10.1890/02-0433", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:20:07Z", "type": "Journal Article", "created": "2007-06-04", "title": "Plant Diversity, Soil Microbial Communities, And Ecosystem Function: Are There Any Links?", "description": "A current debate in ecology centers on the extent to which ecosystem function depends on biodiversity. Here, we provide evidence from a long-term field manipulation of plant diversity that soil microbial communities, and the key ecosystem processes that they mediate, are significantly altered by plant species richness. After seven years of plant growth, we determined the composition and function of soil microbial communities beneath experimental plant diversity treatments containing 1-16 species. Microbial community bio- mass, respiration, and fungal abundance significantly increased with greater plant diversity, as did N mineralization rates. However, changes in microbial community biomass, activity, and composition largely resulted from the higher levels of plant production associated with greater diversity, rather than from plant diversity per se. Nonetheless, greater plant pro- duction could not explain more rapid N mineralization, indicating that plant diversity affected this microbial process, which controls rates of ecosystem N cycling. Greater N availability probably contributed to the positive relationship between plant diversity and productivity in the N-limited soils of our experiment, suggesting that plant-microbe in- teractions in soil are an integral component of plant diversity's influence on ecosystem", "keywords": ["2. Zero hunger", "soil C and N cycling", "Science", "Ecology and Evolutionary Biology", "microbial communities", "phospholipid fatty acid analysis", "04 agricultural and veterinary sciences", "15. Life on land", "plant communities", "gross N mineralization", "soil microbes", "ecosystem function", "0401 agriculture", " forestry", " and fisheries", "species richness", "gross N immobilization", "biodiversity"], "contacts": [{"organization": "Zak, Donald R., Holmes, William E., White, David C., Peacock, Aaron D., Tilman, David,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1890/02-0433"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1890/02-0433", "name": "item", "description": "10.1890/02-0433", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1890/02-0433"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2003-08-01T00:00:00Z"}}, {"id": "10.1890/03-5133", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:20:07Z", "type": "Journal Article", "created": "2007-06-06", "title": "Relationships Among Fires, Fungi, And Soil Dynamics In Alaskan Boreal Forests", "description": "Fires are critical pathways of carbon loss from boreal forest soils, whereas microbial communities form equally critical controls over carbon accumulation between fires. We used a chronosequence in Alaska to test Read's hypothesis that arbuscular my- corrhizal fungi should dominate ecosystems with low accumulation of surface litter, and ectomycorrhizal fungi should proliferate where organic horizons are well-developed. This pattern is expected because ectomycorrhizal fungi display a greater capacity to mineralize organic compounds than do arbuscular mycorrhizal fungi. The sites were located in upland forests near Delta Junction, Alaska, and represent stages at 3, 15, 45, and 80 years following fire. Soil organic matter accumulated 2.8-fold over time. Fire did not noticeably reduce the abundance of arbuscular mycorrhizal fungi. In contrast, ectomycorrhizal colonization re- quired up to 15 years to return to pre-fire levels. As a result, dominant mycorrhizal groups shifted from arbuscular to ectomycorrhizal fungi as succession progressed. Bacterial func- tional diversity was greatest in the oldest sites. Altogether, microbes that can mineralize organic compounds (i.e., ectomycorrhizae and bacteria) recovered more slowly than those that cannot (i.e., arbuscular mycorrhizae). Potential net N mineralization and standing pools of ammonium-N were relatively low in the youngest site. In addition, glomalin stocks were positively correlated with arbuscular mycorrhizal hyphal length, peaking early in the chron- osequence. Our results indicate that microbial succession may influence soil carbon and nitrogen dynamics in the first several years following fire, by augmenting carbon storage in glomalin while inhibiting mineralization of organic compounds.", "keywords": ["external hyphae", "soil carbon and nitrogen", "biolog", "04 agricultural and veterinary sciences", "15. Life on land", "chronosequence", "fire and soil microbes", "succession", "Alaskan boreal forest", "mycorrhizal fungi", "organic material", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "mineralization", "microbial community", "glomalin"]}, "links": [{"href": "https://escholarship.org/content/qt3wc775gm/qt3wc775gm.pdf"}, {"href": "https://doi.org/10.1890/03-5133"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecological%20Applications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1890/03-5133", "name": "item", "description": "10.1890/03-5133", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1890/03-5133"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-12-01T00:00:00Z"}}, {"id": "10.2139/ssrn.4881510", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:20:38Z", "type": "Journal Article", "created": "2024-12-13", "title": "Bedrock modulates the elevational patterns of soil microbial communities", "description": "Elevational gradients are often used to reveal how soil microorganisms will respond to climate change. However, inconsistent microbial distribution patterns across different elevational transects have raised doubts about their practical applicability. We hypothesized that variations in bedrock, which influence soil physical and chemical properties, would explain these inconsistencies. We therefore investigated soil microbial communities (bacterial and fungal) along two adjacent elevational transects with different bedrocks (granite vs. slate) in a subtropical forest. Our findings reveal that soil microbial communities are shaped by complex interactions between bedrock type and environmental factors along elevational gradients. Bacterial biomass was higher on slate, whereas fungal biomass was higher on granite. On granite, both bacterial and fungal biomass increased with elevation, whereas divergent patterns were observed on slate, likely due to the distinct soil properties or combinations of properties influencing microbial biomass on each bedrock. Bedrock and elevation strongly influenced microbial beta-diversity, with beta-diversity on granite driven primarily by soil total phosphorus and moisture, and on slate by soil organic carbon and pH. In contrast, alpha-diversity was impacted less by bedrock and elevation, but its relationship with environmental factors varied markedly between bedrock types. Overall, our results highlight the critical influence of bedrock in determining soil microbial community structure along elevational gradients and their potential responses to climate change.", "keywords": ["[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", "570", "Slate", "Atmosphere", "[SDU.OCEAN] Sciences of the Universe [physics]/Ocean", " Atmosphere", "Altitude", "Climate", "Science", "Granite", "Q", "Soil microbes", "551", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "Soil", "Parent material", "Altitude Climate Granite Parent material Slate Soil microbes", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", "microbes", "environment"]}, "links": [{"href": "https://doi.org/10.2139/ssrn.4881510"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geoderma", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2139/ssrn.4881510", "name": "item", "description": "10.2139/ssrn.4881510", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2139/ssrn.4881510"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "10.3389/fmicb.2016.01893", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:20:56Z", "type": "Journal Article", "created": "2016-11-28", "title": "Long-Term Application Of Bioorganic Fertilizers Improved Soil Biochemical Properties And Microbial Communities Of An Apple Orchard Soil", "description": "Soil biochemical properties and microbial communities are usually considered as important indicators of soil health because of their association with plant nutrition. In this study, we investigated the impact of long-term application of bioorganic fertilizer (BOF) on soil biochemical properties and microbial communities in the apple orchard soil of the Loess Plateau. The experiment included three treatments: (1) control without fertilization (CK); (2) chemical fertilizer application (CF); and (3) bioorganic fertilizer application (BOF). The high throughput sequencing was used to examine the bacterial and fungal communities in apple orchard soil. The results showed that the BOF treatment significantly increased the apple yield during the experimental time (2009-2015). The application of BOF significantly increased the activities of catalase and invertase compared to those in CK and CF treatments. The high throughput sequencing data showed that the application of BOF changed the microbial community composition of all soil depths considered (0-20 cm, 20-40 cm, and 40-60 cm), e.g., the relative abundance of bio-control bacteria (Xanthomonadales, Lysobacter, Pseudomonas, and Bacillus), Proteobacteria, Bacteroidetes, Ohtaekwangia, Ilyonectria, and Lecanicillium was increased while that of Acidobacteria, Chloroflexi, Gp4, Gp6 and Sphaerobacter was decreased. The increase in apple yield after the application of BOF might be due to increase in organic matter, total nitrogen and catalase and invertase activities of soil and change in the bacterial community composition by enriching Bacillus, Pseudomonas, Lysobacter, and Ohtaekwangia. These results further enhance the understanding on how BOFs alter soil microbial community composition to stimulate soil productivity.", "keywords": ["2. Zero hunger", "composition", "soil microbes", "soil depth", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Bioorganic fertilizers", "Apple yield", "Microbiology", "QR1-502", "6. Clean water"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2016.01893"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2016.01893", "name": "item", "description": "10.3389/fmicb.2016.01893", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2016.01893"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-11-28T00:00:00Z"}}, {"id": "10.3390/land13111759", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:21:10Z", "type": "Journal Article", "created": "2024-10-28", "title": "Temperate Soils Exposed to Drought\u2014Key Processes, Impacts, Indicators, and Unknowns", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The summer drought in the United Kingdom (UK) in 2022 produced significant speculation concerning how its termination may impact and interact with the soil resource. Whilst knowledge regarding soils and droughts exists in the scientific literature, a coherent understanding of the wider range of impacts on soil properties and functions has not been compiled for temperate soils. Here, we draw together knowledge from studies in the UK and other temperate countries to understand how soils respond to drought, and importantly what and where our knowledge gaps are. First, we define the different types of droughts and their frequency in the UK and provide a brief overview on the likely societal impacts that droughts place on the soil and related ecosystems. Our focus is on \u2018agricultural and ecosystem drought\u2019, as this is when soils experience dry periods affecting crops and ecosystem function, followed by rewetting. The behaviour of moisture in soils and the key processes that contribute to its storage and transport are examined. The principal changes in the physical, chemical, and biological properties of soils resulting from drought, and rewetting (i.e., drought termination) are discussed and their extensive interactions are demonstrated. Processes that are involved in the rewetting of soils are explored for soil and catchment-scale soil responses. Lastly, soils\u2019 recovery after drought is considered, knowledge gaps are identified, and areas to improve understanding are highlighted.</p></article>", "keywords": ["soil health", "rewetting", "soil microbes", "S", "soil water infiltration", "soil water repellency", "drought recovery", "soil nutrients", "Agriculture", "drought termination", "meteorological drought", "soil moisture", "soil fauna"]}, "links": [{"href": "https://www.mdpi.com/2073-445X/13/11/1759/pdf"}, {"href": "https://doi.org/10.3390/land13111759"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Land", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/land13111759", "name": "item", "description": "10.3390/land13111759", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/land13111759"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-10-26T00:00:00Z"}}, {"id": "10.3390/soilsystems3010021", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:21:19Z", "type": "Journal Article", "created": "2019-03-25", "title": "Abiotic and Biotic Factors Influencing the Effect of Microplastic on Soil Aggregation", "description": "<p>Plastic is an anthropogenic, ubiquitous and persistent contaminant accumulating in our environment. The consequences of the presence of plastics for soils, including soil biota and the processes they drive, are largely unknown. This is particularly true for microplastic. There is only little data available on the effect of microplastics on key soil processes, including soil aggregation. Here, we investigated the consequences of polyester microfiber contamination on soil aggregation of a sandy soil under laboratory conditions. We aimed to test if the microfiber effects on soil aggregation were predominantly physical or biological. We found that soil biota addition (compared to sterile soil) had a significant positive effect on both the formation and stabilization of soil aggregates, as expected, while wet-dry cycles solely affected aggregate formation. Polyester microfiber contamination did not affect the formation and stability of aggregates. But in the presence of soil biota, microfibers reduced soil aggregate stability. Our results show that polyester microfibers have the potential to alter soil structure, and that these effects are at least partially mediated by soil biota.</p>", "keywords": ["570", "wet-dry cycle", "Physical geography", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "GB3-5030", "soil aggregation", "Chemistry", "soil microbes", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "polyester", "microplastic", "QD1-999", "fiber", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://www.mdpi.com/2571-8789/3/1/21/pdf"}, {"href": "https://www.mdpi.com/2571-8789/3/1/21/pdf"}, {"href": "https://doi.org/10.3390/soilsystems3010021"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Systems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/soilsystems3010021", "name": "item", "description": "10.3390/soilsystems3010021", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/soilsystems3010021"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-03-22T00:00:00Z"}}, {"id": "10.5061/dryad.9s4mw6mks", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:21:41Z", "type": "Dataset", "title": "Soil microbes respond to four-year warming and precipitation alteration", "description": "unspecifiedSoil temperature and moisture were  automatically monitored by 5-TM probe sensors at the soil depth of 5 cm  with an EM-to data logger (Meter, Inc., Pullman, WA, USA) in each  plot.\u00a0 Soil aerobic respiration (soil CO<sub>2</sub>  flux) was automatically measured once an hour by the LI-8150 Multiplexer  composed of LI -8100-104 long-term chambers (Li-Cor Inc., Lincoln, NE,  USA) and a LI-8100 Automated soil CO<sub>2</sub> flux system  (Wang<em> et al.</em>,  2014). As for soil CH<sub>4</sub> fluxes, gas  samples were collected from all plots twice or three times per month  between 9:00 a.m. and 12:00 p.m. on sunny days (Qi et al., 2021).  Specifically, a stainless steel collar was inserted 10 cm into the soil in  each plot and a static opaque chamber (40 cm in length  \u00b4 40 cm in width \u00b4 40 cm in height) was used to collect gas samples from soil at this site (Yuan<em> et al.</em>, 2021). At each measurement, 60 mL gas sample was collected in each plot and analyzed within 24 hours using gas chromatography (Agilent 7890A; Agilent Technologies, Santa Clara, CA, USA) to present a one-day average flux. Similar with soil CH<sub>4</sub> fluxes, ecosystem C fluxes were also measured twice or three times per month between 9:00 a.m. and 12:00 p.m. on sunny days (Qi<em> et al.</em>, 2021). We used a LI-6400 infrared gas analyzer (LI-COR, Inc., Lincoln, NE, USA) with a transparent chamber (0.4 m in length \u00d7 0.4 m in width \u00d7 0.6 m in height) to measure net ecosystem CO<sub>2</sub> exchange (NEE). Ecosystem respiration (ER) was measured by using the similar method with the transparent chamber covered by an opaque cloth. Gross ecosystem production (GEP) was estimated as the difference between NEE and ER (Qi<em> et al.</em>, 2021). In this study, the more negative NEE represents more CO<sub>2</sub> sequestration by terrestrial ecosystem.", "keywords": ["2. Zero hunger", "13. Climate action", "soil microbes", "Global warming", "15. Life on land", "FOS: Natural sciences"], "contacts": [{"organization": "Qi, Qi, Zhao, Jianshu, Tian, Renmao, Zeng, Yufei, Xie, Changyi, Gao, Qun, Dai, Tianjiao, Wang, Hao, He, Jin-Sheng, Konstantinidis, Konstantinos, Yang, Yunfeng, Zhou, Jizhong, Guo, Xue,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.9s4mw6mks"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.9s4mw6mks", "name": "item", "description": "10.5061/dryad.9s4mw6mks", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.9s4mw6mks"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-09-25T00:00:00Z"}}, {"id": "10.5061/dryad.h781v", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:21:44Z", "type": "Dataset", "title": "Data from: The microbially-mediated soil organic carbon loss under degenerative succession in an alpine meadow", "description": "unspecifiedMicrobial community and  network of meadow alpine soil by Illumina sequencingThe Qinghai-Tibet  Plateau is the highest and the largest low-latitude plateau in the world,  and also it is an extremely sensitive region to the impact of global  warming and environmental changes. The alpine meadow, widely distributed  on the Tibetan Plateau, occupies over 40% of the Qinghai-Tibetan Plateau  area and plays a critical role in regional sustainable development,  biodiversity and water resource conservation. The alpine meadow also was a  large soil organic-carbon pool.In recently decades, succession and  degradation were gradually occurring between different alpine meadow  types, such as alpine meadow might appear in the alpine steppe meadow  region according to years of field investigation which could be the  consequences of the climate warming and anthropogenic activities. The aims  of our study were to determine the effect of degenerated succession from  alpine meadow (AM) to alpine steppe meadow (ASM) on soil organic carbon  and soil microbial community structure.The archived files included one OTU  table generated from the 16S rRNA gene sequencing data, as well as the  input and output files for the network analyses.Dryad data  deposit.7z", "keywords": ["2. Zero hunger", "soil organic carbon", "16S rDNA sequencing", "ecological function", "13. Climate action", "soil microbes", "Microbial community", "15. Life on land", "Land Cover Change", "6. Clean water", "Metagenomic analysis", "12. Responsible consumption"], "contacts": [{"organization": "Zhang, Yuguang, Liu, Xiao, Cong, Jing, Lu, Hui, Sheng, Yuyu, Wang, Xiulei, Li, Diqiang, Liu, Xueduan, Yin, Huaqun, Zhou, Jizhong, Deng, Ye,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.h781v"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.h781v", "name": "item", "description": "10.5061/dryad.h781v", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.h781v"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-04-19T00:00:00Z"}}, {"id": "10.5061/dryad.nc57k7g", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:21:46Z", "type": "Dataset", "title": "Data from: Soil microbial biomass increases along elevational gradients in the tropics and sub-tropics but not elsewhere", "description": "Open AccessAppendix  S1", "keywords": ["2. Zero hunger", "soil organic carbon", "2002-2018", "13. Climate action", "soil microbes", "Verwerkte data", "Processed data", "15. Life on land", "soil microbial biomass"], "contacts": [{"organization": "He, X., Hou, E., Veen, Ciska, Ellwood, Farnon, Dijkstra, Paul, Sui, X, Zhang, S., Wen, D, Chu, C,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.nc57k7g"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.nc57k7g", "name": "item", "description": "10.5061/dryad.nc57k7g", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.nc57k7g"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-09-20T00:00:00Z"}}, {"id": "10.5061/dryad.q428q", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:21:46Z", "type": "Dataset", "title": "Data from: Changes in plant, soil and microbes in a typical steppe from simulated grazing: explaining potential change in soil carbon", "description": "unspecifiedPlant  parametersThe data were collected  in the field. Excel was used to create the data. SE-standard error,  Treatment: C- control,DU-dung and urine return; M-mowing; T-trampling;  DU+M-mowing combined with the addition of dung and urine; M+T-mowing  combined with trampling; DU+T-trampling combined with the addition of dung  and urine; DU+M+T-mowing combined with trampling and the addition of dung  and urineSoil  parametersThe data were collected  in the field. Excel was used to create the data. SE-standard error,  MBC-soil microbial biomass carbon, MBN- soil microbial biomass nitrogen.  Treatment: C- control,DU-dung and urine return; M-mowing; T-trampling;  DU+M-mowing combined with the addition of dung and urine; M+T-mowing  combined with trampling; DU+T-trampling combined with the addition of dung  and urine; DU+M+T-mowing combined with trampling and the addition of dung  and urineSoil microbes'  parametersThe data were collected  in the field. Excel was used to create the data. SE-standard error,  Gram+-gram positive bacteria, Gram--gram negative bacteria, AMF-  arbuscular mycorrhizal fungi, B/F-bacteria to fungi ratio. Treatment: C-  control,DU-dung and urine return; M-mowing; T-trampling; DU+M-mowing  combined with the addition of dung and urine; M+T-mowing combined with  trampling; DU+T-trampling combined with the addition of dung and urine;  DU+M+T-mowing combined with trampling and the addition of dung and  urinePCA and RDA analysis  data sheetThe data were collected  in the field. Excel was used to create the data. Gram+-gram positive  bacteria, Gram--gram negative bacteria, AMF- arbuscular mycorrhizal fungi,  B/F-bacteria to fungi ratio, SOC- soil organic carbon, TN- soil total  nitrogen, C/N-soil organic carbon to total nitrogen ratio. Treatment: C-  control,DU-dung and urine return; M-mowing; T-trampling; DU+M-mowing  combined with the addition of dung and urine; M+T-mowing combined with  trampling; DU+T-trampling combined with the addition of dung and urine;  DU+M+T-mowing combined with trampling and the addition of dung and  urine", "keywords": ["2. Zero hunger", "Artemisia frigida", "15. Life on land", "Soil microbes' parameters", "6. Clean water", "13. Climate action", "Cleistogenes squarrosa", "Agropyron cristatum", "PCA and RDA analysis data sheet", "Plant parameters", "Potentilla acaulis", "Soil parameters", "Stipa krylovii", "Leymus chinensis"], "contacts": [{"organization": "Liu, Nan, Kan, Haiming, Yang, Gaowen, Zhang, Yingjun, Yang, G. W.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.q428q"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.q428q", "name": "item", "description": "10.5061/dryad.q428q", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.q428q"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-01-20T00:00:00Z"}}, {"id": "10261/336659", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:24:48Z", "type": "Journal Article", "created": "2017-06-12", "title": "Aridity Decouples C:N:P Stoichiometry Across Multiple Trophic Levels in Terrestrial Ecosystems", "description": "Open AccessPeer reviewed", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Nitrogen", "Ants", "carbon", "Phosphorus", "ants", "Soil microbes", "15. Life on land", "nitrogen", "Carbon", "Heterotrophs", "03 medical and health sciences", "Autotrophs", "13. Climate action", "XXXXXX - Unknown", "phosphorus"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s10021-017-0161-9.pdf"}, {"href": "https://doi.org/10261/336659"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecosystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10261/336659", "name": "item", "description": "10261/336659", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10261/336659"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-06-12T00:00:00Z"}}, {"id": "11585/996222", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:25:09Z", "type": "Journal Article", "created": "2021-07-10", "title": "A critical perspective on interpreting amplicon sequencing data in soil ecological research", "description": "Abstract   Microbial community analysis via marker gene amplicon sequencing has become a routine method in the field of soil research. In this perspective, we discuss technical challenges and limitations of amplicon sequencing and present statistical and experimental approaches that can help addressing the spatio-temporal complexity of soil and the high diversity of organisms therein. We illustrate the impact of compositionality on the interpretation of relative abundance data and discuss effects of sample replication on the statistical power in soil community analysis. Additionally, we argue for the need of increased study reproducibility and data availability, as well as complementary techniques for generating deeper ecological insights into microbial roles and our understanding thereof in soil ecosystems. At this stage, we call upon researchers and specialized soil journals to consider the current state of data analysis, interpretation, and availability to improve the rigor of future studies.", "keywords": ["0301 basic medicine", "2. Zero hunger", "Soil microbial diversity", "0303 health sciences", "Soil metabarcoding", "DIVERSITY", "Ecology; Soil microbes; Amplicon sequencing", "Compositional data", "SCALE SPATIAL HETEROGENEITY", "15. Life on land", "BIOMASS", "03 medical and health sciences", "106026 \u00d6kosystemforschung", "Soil complexity", "CARBON-USE EFFICIENCY", "BACTERIA", "DNA EXTRACTION", "MICROORGANISMS", "MICROBIAL COMMUNITIES", "106026 Ecosystem research", "RIBOSOMAL-RNA", "Amplicon sequencing", "Soil microorganisms", "GENERATION"]}, "links": [{"href": "https://doi.org/11585/996222"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "11585/996222", "name": "item", "description": "11585/996222", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/11585/996222"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-09-01T00:00:00Z"}}, {"id": "1887/3716986", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:25:20Z", "type": "Journal Article", "created": "2023-11-15", "title": "Cessation of grazing causes biodiversity loss and homogenization of soil food webs", "description": "<p>                     There is widespread concern that cessation of grazing in historically grazed ecosystems is causing biotic homogenization and biodiversity loss. We used 12 montane grassland sites along an 800 km north\uffe2\uff80\uff93south gradient across the UK, to test whether cessation of grazing affects local                     \uffce\uffb1                     - and                     \uffce\uffb2                     -diversity of below-ground food webs. We show cessation of grazing leads to strongly decreased                     \uffce\uffb1                     -diversity of most groups of soil microbes and fauna, particularly of relatively rare taxa. By contrast, the                     \uffce\uffb2                     -diversity varied between groups of soil organisms. While most soil microbial communities exhibited increased homogenization after cessation of grazing, we observed decreased homogenization for soil fauna after cessation of grazing. Overall, our results indicate that exclusion of domesticated herbivores from historically grazed montane grasslands has far-ranging negative consequences for diversity of below-ground food webs. This underscores the importance of grazers for maintaining the diversity of below-ground communities, which play a central role in ecosystem functioning.                   </p", "keywords": ["2. Zero hunger", "570", "Global Change and Conservation", "Food Chain", "soil communities", "Microbiota", "land abandonment", "500", "Biodiversity", "15. Life on land", "Grassland", "biotic homogenization", "long-term experiments", "Soil", "soil microbes", "\u03b1-diversity", "Life Science", "grazing", "soil fauna"]}, "links": [{"href": "https://doi.org/1887/3716986"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "1887/3716986", "name": "item", "description": "1887/3716986", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/1887/3716986"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-07T00:00:00Z"}}, {"id": "2624996471", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-02T16:25:52Z", "type": "Journal Article", "created": "2017-06-12", "title": "Aridity Decouples C:N:P Stoichiometry Across Multiple Trophic Levels in Terrestrial Ecosystems", "description": "Open AccessPeer reviewed", "keywords": ["2. 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