{"type": "FeatureCollection", "facets": {"type": {"type": "terms", "property": "type", "buckets": [{"value": "Journal Article", "count": 104}, {"value": "Dataset", "count": 16}, {"value": "Report", "count": 3}]}, "soil_chemical_properties": {"type": "terms", "property": "soil_chemical_properties", "buckets": [{"value": "carbon", "count": 18}, {"value": "soil organic carbon", "count": 11}, {"value": "soil organic matter", "count": 9}, {"value": "methane", "count": 3}, {"value": "carbon stocks", "count": 2}, {"value": "mineral fertilisers", "count": 2}, {"value": "aluminium", "count": 1}, {"value": "ammonia", "count": 1}, {"value": "nitrate", "count": 1}]}, "soil_biological_properties": {"type": "terms", "property": "soil_biological_properties", "buckets": [{"value": "plants", "count": 11}, {"value": "microbial biomass", "count": 7}, {"value": "respiration", "count": 5}, {"value": "necromass", "count": 3}, {"value": "biomass production", "count": 2}, {"value": "rooting", "count": 1}, {"value": "vegetation", "count": 1}]}, "soil_physical_properties": {"type": "terms", "property": "soil_physical_properties", "buckets": [{"value": "drainage", "count": 1}, {"value": "water", "count": 1}]}, "soil_classification": {"type": "terms", "property": "soil_classification", "buckets": [{"value": "forest soils", "count": 7}, {"value": "entisols", "count": 1}]}, "soil_functions": {"type": "terms", "property": "soil_functions", "buckets": [{"value": "decomposition", "count": 123}, {"value": "land cover change", "count": 3}, {"value": "ecosystem services", "count": 3}, {"value": "soil fertility", "count": 2}, {"value": "climate resilience", "count": 1}, {"value": "soil biodiversity", "count": 1}, {"value": "food security", "count": 1}, {"value": "water purification", "count": 1}, {"value": "productivity", "count": 1}]}, "soil_threats": {"type": "terms", "property": "soil_threats", "buckets": [{"value": "contaminants", "count": 2}, {"value": "disturbance", "count": 1}, {"value": "soil compaction", "count": 1}, {"value": "soil sealing", "count": 1}]}, "soil_processes": {"type": "terms", "property": "soil_processes", "buckets": []}, "soil_management": {"type": "terms", "property": "soil_management", "buckets": [{"value": "compost", "count": 2}, {"value": "plant residues", "count": 2}, {"value": "cultivation", "count": 2}, {"value": "liming", "count": 1}, {"value": "soil rehabilitation", "count": 1}]}, "ecosystem_services": {"type": "terms", "property": "ecosystem_services", "buckets": [{"value": "terrestrial ecosystems", "count": 2}, {"value": "ecosystem functioning", "count": 1}, {"value": "ecosystem functions", "count": 1}]}}, "features": [{"id": "10.1046/j.1365-2486.2000.00277.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:18:08Z", "type": "Journal Article", "created": "2003-03-11", "title": "Litter Quality And Decomposition In Danthonia Richardsonii Swards In Response To Co2 And Nitrogen Supply Over Four Years Of Growth", "description": "Summary<p>Litter quality parameters of Danthonia richardsonii grown under CO2 concentrations of \uffe2\uff89\uff88\uffe2\uff80\uff83359 &amp; \uffe2\uff89\uff88\uffe2\uff80\uff83719\uffe2\uff80\uff83\uffce\uffbcL L\uffe2\uff88\uff92\uffe2\uff80\uff8a1 at three mineral N supply rates (2.2, 6.7 &amp; 19.8\uffe2\uff80\uff83g\uffe2\uff80\uff83m\uffe2\uff88\uff92\uffe2\uff80\uff8a2\uffe2\uff80\uff83y\uffe2\uff88\uff92\uffe2\uff80\uff8a1) were determined. C:N ratio was increased in senesced leaf (enhancement ratios, Re/c, of 1.25\uffe2\uff80\uff931.67), surface litter (1.34\uffe2\uff80\uff931.64) and root (1.13\uffe2\uff80\uff931.30) by CO2 enrichment. After 3\uffe2\uff80\uff83years of growth, nonstructural carbohydrate concentrations were reduced in senesced leaf lamina (avg. Re/c=\uffe2\uff80\uff8a\uffe2\uff80\uff830.84) but not in root in response to CO2 enrichment. Cellulose concentrations increased slightly in senesced leaf (avg. Re/c=\uffe2\uff80\uff8a\uffe2\uff80\uff831.07) but not in root in response to CO2 enrichment. Lignin and polyphenolic concentrations in senesced leaf and root were not changed by CO2 enrichment. Decomposition, measured as cumulative respiration in standard conditions in vitro, was reduced in leaf litter grown under CO2 enrichment. Root decomposition in vitro was lower in the material produced under CO2 enrichment at the two higher rates of mineral N supply. Significant correlations between decomposition of leaf litter and initial %N, C:N ratio and lignin:N ratio were found. Decomposition in vivo, measured as carbon disappearance from the surface litter was not affected by CO2 concentration. Arbuscular mycorrhizal infection was not changed by CO2 enrichment. Microbial carbon was higher under CO2 enrichment at the two higher rates of mineral N supply. Possible reasons for the lack of effect of changes in litter quality on in\uffe2\uff80\uff90sward decomposition rates are discussed.</p>", "keywords": ["decomposition", "grass", "Arbuscular mycorrhizae", "Microbial biomass", "carbon dioxide", "04 agricultural and veterinary sciences", "15. Life on land", "nitrogen", "microcosm", "C3 plant", "litter", "Danthonia", "biochemical composition", "Long-term experiment", "Keywords: arbuscular mycorrhiza", "Climate change", "0401 agriculture", " forestry", " and fisheries", "nutrient availability", "Danthonia richardsonii C:N"], "contacts": [{"organization": "Jason L. Lutze, Jason L. Lutze, Roger M. Gifford, Helen N. Adams,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1046/j.1365-2486.2000.00277.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1046/j.1365-2486.2000.00277.x", "name": "item", "description": "10.1046/j.1365-2486.2000.00277.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1046/j.1365-2486.2000.00277.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2000-01-01T00:00:00Z"}}, {"id": "10.1046/j.1365-2486.2003.00598.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:18:09Z", "type": "Journal Article", "created": "2003-05-06", "title": "Soil Organic Matter Biochemistry And Potential Susceptibility To Climatic Change Across The Forest-Tundra Ecotone In The Fennoscandian Mountains", "description": "Abstract<p>We studied soil organic carbon (C) chemistry at the mountain birch forest\uffe2\uff80\uff90tundra ecotone in three regions of the Fennoscandian mountain range with comparable vegetation cover but contrasting degrees of continentality and latitude. The aim of the study was to identify functional compound classes and their relationships to decomposition and spatial variation across the ecotone and latitudinal gradient. Solid\uffe2\uff80\uff90state 13C nuclear magnetic resonance (CPMAS 13C NMR) was used to identify seven functional groups of soil organic C: alkyls, N\uffe2\uff80\uff90alkyls, O\uffe2\uff80\uff90alkyls, acetals, aromatics, phenolics and carboxyls. N\uffe2\uff80\uff90alkyls, O\uffe2\uff80\uff90alkyls and acetals are generally considered labile substrates for a large number of saprotrophic fungi and bacteria, whilst phenolics and aromatics are mainly decomposed by lignolytic organisms and contribute to the formation of soil organic matter together with aliphatic alkyls and carboxyls. All soils contained a similar proportional distribution of functional groups, although relatively high amounts of N\uffe2\uff80\uff90alkyls, O\uffe2\uff80\uff90alkyls and acetals were present in comparison to earlier published studies, suggesting that large amounts of soil C were potentially vulnerable to microbial degradation. Soil organic matter composition was different at the most southerly site (Dovrefjell, Norway), compared with the two more northerly sites (Abisko, Sweden, and Joatka, Norway), with higher concentrations of aromatics and phenolics, as well as pronounced differences in alkyl concentrations between forest and tundra soils. Clear differences between mountain birch forest and tundra heath soil was noted, with generally higher concentrations of labile carbon present in tundra soils. We conclude that, although mesic soils around the forest\uffe2\uff80\uff90tundra ecotone in Fennoscandia are a potential source of C to the atmosphere in a changing environment, the response is likely to vary between comparable ecosystems in relation to latitude and continentality as well as soil properties especially soil nitrogen content and pH.</p>", "keywords": ["570", "decomposition", "550", "Fennoscandia", "Mass Import - autoclassified (may be erroneous)", "04 agricultural and veterinary sciences", "910", "15. Life on land", "Chemistry", "Soil", "ecotone", "13. Climate action", "soil organic matter", "CPMAS 13C NMR", "Climate change", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://doi.org/10.1046/j.1365-2486.2003.00598.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1046/j.1365-2486.2003.00598.x", "name": "item", "description": "10.1046/j.1365-2486.2003.00598.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1046/j.1365-2486.2003.00598.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2003-05-01T00:00:00Z"}}, {"id": "10.1111/gcb.12338", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:18:59Z", "type": "Journal Article", "created": "2013-07-29", "title": "Investigating The Long-Term Legacy Of Drought And Warming On The Soil Microbial Community Across Five European Shrubland Ecosystems", "description": "Abstract<p>We investigated how the legacy of warming and summer drought affected microbial communities in five different replicated long\uffe2\uff80\uff90term (&gt;10\uffc2\uffa0years) field experiments across Europe (EU\uffe2\uff80\uff90FP7 INCREASE infrastructure). To focus explicitly on legacy effects (i.e., indirect rather than direct effects of the environmental factors), we measured microbial variables under the same moisture and temperature in a brief screening, and following a pre\uffe2\uff80\uff90incubation at stable conditions. Specifically, we investigated the size and composition of the soil microbial community (PLFA) alongside measurements of bacterial (leucine incorporation) and fungal (acetate in ergosterol incorporation) growth rates, previously shown to be highly responsive to changes in environmental factors, and microbial respiration. We found no legacy effects on the microbial community size, composition, growth rates, or basal respiration rates at the effect sizes used in our experimental setup (0.6\uffc2\uffa0\uffc2\uffb0C, about 30% precipitation reduction). Our findings support previous reports from single short\uffe2\uff80\uff90term ecosystem studies thereby providing a clear evidence base to allow long\uffe2\uff80\uff90term, broad\uffe2\uff80\uff90scale generalizations to be made. The implication of our study is that warming and summer drought will not result in legacy effects on the microbial community and their processes within the effect sizes here studied. While legacy effects on microbial processes during perturbation cycles, such as drying\uffe2\uff80\uff93rewetting, and on tolerance to drought and warming remain to be studied, our results suggest that any effects on overall ecosystem processes will be rather limited. Thus, the legacies of warming and drought should not be prioritized factors to consider when modeling contemporary rates of biogeochemical processes in soil.</p>", "keywords": ["2. Zero hunger", "decomposition", "Hot Temperature", "Bacteria", "soil C cycle", "Climate Change", "global climate change", "warming adaptation", "Fungi", "04 agricultural and veterinary sciences", "15. Life on land", "carbon sequestration", "6. Clean water", "ecosystem service", "Droughts", "Europe", "Leucine", "13. Climate action", "temperature acclimation", "0401 agriculture", " forestry", " and fisheries", "mineralization", "Seasons", "Ecosystem", "Soil Microbiology", "Acetic Acid"]}, "links": [{"href": "https://doi.org/10.1111/gcb.12338"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.12338", "name": "item", "description": "10.1111/gcb.12338", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.12338"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-10-10T00:00:00Z"}}, {"id": "10.1088/1748-9326/ac4f8d", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:18:36Z", "type": "Journal Article", "created": "2022-01-27", "title": "Seasonal variability in particulate organic carbon degradation in the Kolyma River, Siberia", "description": "Abstract                <p>Major Arctic rivers are undergoing changes due to climate warming with higher discharge and increased amounts of solutes and organic carbon (OC) draining into rivers and coastal seas. Permafrost thaw mobilizes previously frozen OC to the fluvial network where it can be degraded into greenhouse gases and emitted to the atmosphere. Degradation of OC during downstream transport, especially of the particulate OC (POC), is however poorly characterized. Here, we quantified POC degradation in the Kolyma River, the largest river system underlain with continuous permafrost, during 9\uffe2\uff80\uff9315 d whole-water incubations (containing POC and dissolved OC\uffe2\uff80\uff94DOC) during two seasons: spring freshet (early June) and late summer (end of July). Furthermore, we examined interactions between dissolved and particulate phases using parallel incubations of filtered water (only DOC). We measured OC concentrations and carbon isotopes (\uffce\uffb413C, \uffce\uff9414C) to define carbon losses and to characterize OC composition, respectively. We found that both POC composition and biodegradability differs greatly between seasons. During summer, POC was predominantly autochthonous (47%\uffe2\uff80\uff9395%) and degraded rapidly (\uffe2\uff88\uffbc33% loss) whereas freshet POC was largely of allochthonous origin (77%\uffe2\uff80\uff9396%) and less degradable. Gains in POC concentrations (up to 31%) were observed in freshet waters that could be attributed to flocculation and adsorption of DOC to particles. The demonstrated DOC flocculation and adsorption to POC indicates that the fate and dynamics of the substantially-sized DOC pool may shift from degradation to settling, depending on season and POC concentrations\uffe2\uff80\uff94the latter potentially acting to attenuate greenhouse gas emissions from fluvial systems. We finally note that DOC incubations without POC present may yield degradation estimates that do not reflect degradation in the in situ river conditions, and that interaction between dissolved and particulate phases may be important to consider when determining fluvial carbon dynamics and feedbacks under a changing climate.</p", "keywords": ["Science", "Physics", "QC1-999", "Q", "F800", "15. Life on land", "Environmental technology. Sanitary engineering", "degradation rate", "01 natural sciences", "permafrost; Arctic; degradation rate; carbon isotopes; adsorption; flocculation", "F900", "Environmental sciences", "Arctic", "carbon isotopes", "adsorption", "flocculation", "13. Climate action", "SDG 13 - Climate Action", "GE1-350", "14. Life underwater", "TD1-1066", "permafrost", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://nrl.northumbria.ac.uk/id/eprint/48293/8/Keskitalo_2022_Environ._Res._Lett._17_034007.pdf"}, {"href": "https://doi.org/10.1088/1748-9326/ac4f8d"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Research%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1088/1748-9326/ac4f8d", "name": "item", "description": "10.1088/1748-9326/ac4f8d", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1088/1748-9326/ac4f8d"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-02-21T00:00:00Z"}}, {"id": "10.1101/2023.10.03.560709", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:18:47Z", "type": "Journal Article", "created": "2023-10-04", "title": "Bacteria face trade-offs in the decomposition of complex biopolymers", "description": "Abstract<p>Although depolymerization of complex carbohydrates is a growth-limiting bottleneck for microbial decomposers, we still lack understanding about how the production of different types of extracellular enzymes affect individual microbes and in turn the performance of whole decomposer communities. In this work we use a theoretical model to evaluate the potential trade-offs faced by microorganisms in biopolymer decomposition which arise due to the varied biochemistry of different depolymerizing enzyme classes. We specifically consider two broad classes of depolymerizing extracellular enzymes, which are widespread across microbial taxa: exo-enzymes that cleave small units from the ends of polymer chains and endo-enzymes that act at random positions generating degradation products of varied sizes. Our results demonstrate a fundamental trade-off in the production of these enzymes, which is independent of system\uffe2\uff80\uff99s complexity and which appears solely from the intrinsically different temporal depolymerization dynamics. As a consequence, specialists that produce either exo- or only endo-enzymes limit their growth to high or low substrate conditions, respectively. Conversely, generalists that produce both enzymes in an optimal ratio expand their niche and benefit from the synergy between the two enzymes. Finally, our results show that, in spatially-explicit environments, consortia composed of endo- and exo-specialists can only exist under oligotrophic conditions. In summary, our analysis demonstrates that the (evolutionary or ecological) selection of a depolymerization pathway will affect microbial fitness under low- or high substrate conditions, with impacts on the ecological dynamics of microbial communities. It provides a possible explanation why many polysaccharide degraders in nature show the genetic potential to produce both of these enzyme classes.</p>Author summary<p>The decomposition of polysaccharides by microbes is a key process in the global carbon cycle. It requires the joint action of a variety of microbially-produced extracellular enzymes. They can be broadly classified into endo-enzymes, that act in the middle of polymers, and exo-enzymes, that cleave units from polymer ends. Little is known about the benefits for microbes producing a certain enzyme type and the interplay between enzyme producing strategies in mixed communities. This hampers our comprehensive understanding of decomposition in terrestrial and marine ecosystems and thus limits the prediction of decomposition processes, for example in a changing climate.</p><p>Based on theoretical modelling, we revealed a fundamental trade-off in the action of these enzymes. While exo-enzymes are more efficient at high substrate conditions, endo-enzymes perform better when substrate is low. Generalists producing both enzymes expand their ecological niche of substrate availability compared to specialists only producing one of the two types. Complementary specialists only co-exist in oligotrophic conditions. We conclude that producing enzymes for specific steps within polymer degradation represents relevant ecological strategies for microbes in decomposer communities.</p", "keywords": ["2. Zero hunger", "106022 Mikrobiologie", "decomposition", "Bacteria", "Polymers", "QH301-705.5", "complex biopolymers", "Monomers", "Computational Biology", "Chitin", "Models", " Biological", "Enzymes", "Biopolymers", "Consortia", "106026 \u00d6kosystemforschung", "Oligomers", "106022 Microbiology", "14. Life underwater", "Biology (General)", "106026 Ecosystem research", "bacteria", "Depolymerization", "Research Article"]}, "links": [{"href": "https://doi.org/10.1101/2023.10.03.560709"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20Computational%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/2023.10.03.560709", "name": "item", "description": "10.1101/2023.10.03.560709", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/2023.10.03.560709"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-10-03T00:00:00Z"}}, {"id": "11353/10.2115948", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:25:26Z", "type": "Journal Article", "created": "2023-10-04", "title": "Bacteria face trade-offs in the decomposition of complex biopolymers", "description": "Abstract<p>Although depolymerization of complex carbohydrates is a growth-limiting bottleneck for microbial decomposers, we still lack understanding about how the production of different types of extracellular enzymes affect individual microbes and in turn the performance of whole decomposer communities. In this work we use a theoretical model to evaluate the potential trade-offs faced by microorganisms in biopolymer decomposition which arise due to the varied biochemistry of different depolymerizing enzyme classes. We specifically consider two broad classes of depolymerizing extracellular enzymes, which are widespread across microbial taxa: exo-enzymes that cleave small units from the ends of polymer chains and endo-enzymes that act at random positions generating degradation products of varied sizes. Our results demonstrate a fundamental trade-off in the production of these enzymes, which is independent of system\uffe2\uff80\uff99s complexity and which appears solely from the intrinsically different temporal depolymerization dynamics. As a consequence, specialists that produce either exo- or only endo-enzymes limit their growth to high or low substrate conditions, respectively. Conversely, generalists that produce both enzymes in an optimal ratio expand their niche and benefit from the synergy between the two enzymes. Finally, our results show that, in spatially-explicit environments, consortia composed of endo- and exo-specialists can only exist under oligotrophic conditions. In summary, our analysis demonstrates that the (evolutionary or ecological) selection of a depolymerization pathway will affect microbial fitness under low- or high substrate conditions, with impacts on the ecological dynamics of microbial communities. It provides a possible explanation why many polysaccharide degraders in nature show the genetic potential to produce both of these enzyme classes.</p>Author summary<p>The decomposition of polysaccharides by microbes is a key process in the global carbon cycle. It requires the joint action of a variety of microbially-produced extracellular enzymes. They can be broadly classified into endo-enzymes, that act in the middle of polymers, and exo-enzymes, that cleave units from polymer ends. Little is known about the benefits for microbes producing a certain enzyme type and the interplay between enzyme producing strategies in mixed communities. This hampers our comprehensive understanding of decomposition in terrestrial and marine ecosystems and thus limits the prediction of decomposition processes, for example in a changing climate.</p><p>Based on theoretical modelling, we revealed a fundamental trade-off in the action of these enzymes. While exo-enzymes are more efficient at high substrate conditions, endo-enzymes perform better when substrate is low. Generalists producing both enzymes expand their ecological niche of substrate availability compared to specialists only producing one of the two types. Complementary specialists only co-exist in oligotrophic conditions. We conclude that producing enzymes for specific steps within polymer degradation represents relevant ecological strategies for microbes in decomposer communities.</p", "keywords": ["2. Zero hunger", "106022 Mikrobiologie", "decomposition", "Bacteria", "Polymers", "QH301-705.5", "complex biopolymers", "Monomers", "Computational Biology", "Chitin", "Models", " Biological", "Enzymes", "Biopolymers", "Consortia", "106026 \u00d6kosystemforschung", "Oligomers", "106022 Microbiology", "14. Life underwater", "Biology (General)", "106026 Ecosystem research", "bacteria", "Depolymerization", "Research Article"]}, "links": [{"href": "https://doi.org/11353/10.2115948"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20Computational%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "11353/10.2115948", "name": "item", "description": "11353/10.2115948", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/11353/10.2115948"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-10-03T00:00:00Z"}}, {"id": "10.1111/j.1365-2745.2009.01549.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:19:13Z", "type": "Journal Article", "created": "2009-08-11", "title": "Grazing Triggers Soil Carbon Loss By Altering Plant Roots And Their Control On Soil Microbial Community", "description": "Summary<p>1.\uffe2\uff80\uff82Depending on grazing intensity, grasslands tend towards two contrasting systems that differ in terms of species diversity and soil carbon (C) storage. To date, effects of grazing on C cycling have mainly been studied in grasslands subject to constant grazing regimes, whereas little is known for grasslands experiencing a change in grazing intensity. Analysing the transition between C\uffe2\uff80\uff90storing and C\uffe2\uff80\uff90releasing grasslands under low\uffe2\uff80\uff90 and high\uffe2\uff80\uff90grazing regimes, respectively, will help to identify key plant\uffe2\uff80\uff93soil interactions for C cycling.</p><p>2.\uffe2\uff80\uff82The transition was studied in a mesocosm experiment with grassland monoliths submitted to a change in grazing after 14\uffe2\uff80\uff83years of constant high and low grazing. Plant\uffe2\uff80\uff93soil interactions were analysed by following the dynamics of plant and microbial communities, roots and soil organic matter fractions over 2\uffe2\uff80\uff83years. After disturbance change, mesocosms were continuously exposed to13C\uffe2\uff80\uff90labelled CO2, which allowed us to trace both the incorporation of new litter C produced by a modified plant community in soil and the fate of old unlabelled litter C.</p><p>3.\uffe2\uff80\uff82Changing disturbance intensity led to a cascade of events. After shift to high disturbance, photosynthesis decreased followed by a decline in root biomass and a change in plant community structure 1.5\uffe2\uff80\uff83months later. Those changes led to a decrease of soil fungi, a proliferation of Gram(+) bacteria and accelerated decomposition of old particulate organic C (&lt;6\uffe2\uff80\uff83months). At last, accelerated decomposition released plant available nitrogen and decreased soil C storage. Our results indicate that intensified grazing triggers proliferation of Gram(+) bacteria and subsequent faster decomposition by reducing roots adapted to low disturbance.</p><p>4.\uffe2\uff80\uff82Synthesis. Plant communities exert control on microbial communities and decomposition through the activity of their living roots: slow\uffe2\uff80\uff90growing plants adapted to low disturbance reduce Gram(+) bacteria, decomposition of low and high quality litter, nitrogen availability and, thus, ingress of fast\uffe2\uff80\uff90growing plants. Our results indicate that grazing impacts on soil carbon storage by altering plant roots and their control on the soil microbial community and decomposition, and that these processes will foster decomposition and soil C loss in more productive and disturbed grassland systems.</p>", "keywords": ["580", "disturbance", "[SDE] Environmental Sciences", "2. Zero hunger", "decomposition", "[SDV]Life Sciences [q-bio]", "carbon cycling", "04 agricultural and veterinary sciences", "15. Life on land", "matter", "[SDV] Life Sciences [q-bio]", "[SDV.EE] Life Sciences [q-bio]/Ecology", " environment", "nitrogen cycling", "13. Climate action", "[SDV.EE]Life Sciences [q-bio]/Ecology", "ARISA", "[SDE]Environmental Sciences", "PLFA", "0401 agriculture", " forestry", " and fisheries", "grassland", "microbial community", "environment", "management", "particulate organic"]}, "links": [{"href": "https://doi.org/10.1111/j.1365-2745.2009.01549.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-2745.2009.01549.x", "name": "item", "description": "10.1111/j.1365-2745.2009.01549.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-2745.2009.01549.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-08-11T00:00:00Z"}}, {"id": "10.1111/gcb.15420", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:19:01Z", "type": "Journal Article", "created": "2021-03-04", "title": "Microbial inputs at the litter layer translate climate into altered organic matter properties", "description": "<p>&amp;lt;p&amp;gt;Plant litter chemistry is altered during decomposition but it remains unknown if these alterations, and thus the composition of residual litter, will change in response to climate. Selective microbial mineralization of litter components and the accumulation of microbial necromass can drive litter compositional change, but the extent to which these mechanisms respond to climate remains poorly understood. We addressed this knowledge gap by studying needle litter decomposition along a boreal forest climate transect. Specifically, we investigated how the composition and/or metabolism of the decomposer community varies with climate, and if that variation is associated with distinct modifications of litter chemistry during decomposition. We analyzed the composition of microbial phospholipid fatty acids (PLFAs) in the litter layer and measured natural abundance &amp;amp;#948;&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C&amp;lt;sub&amp;gt;PLFA&amp;lt;/sub&amp;gt; values as an integrated measure of microbial metabolisms. Changes in litter chemistry and &amp;amp;#948;&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C values were measured in litterbag experiments conducted at each transect site. A warmer climate was associated with higher litter nitrogen concentrations as well as altered microbial community structure (lower fungi:bacteria ratios) and microbial metabolism (higher &amp;amp;#948;&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C&amp;lt;sub&amp;gt;PLFA&amp;lt;/sub&amp;gt;). Litter in warmer transect regions accumulated less aliphatic&amp;amp;#8208;C (lipids, waxes) and retained more O&amp;amp;#8208;alkyl&amp;amp;#8208;C (carbohydrates), consistent with enhanced &amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C&amp;amp;#8208;enrichment in residual litter, than in colder regions. These results suggest that chemical changes during litter decomposition will change with climate, driven primarily by indirect climate effects (e.g., greater nitrogen availability and decreased fungi:bacteria ratios) rather than direct temperature effects. A positive correlation between microbial biomass &amp;amp;#948;&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C values and &amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C&amp;amp;#8208;enrichment during decomposition suggests that change in litter chemistry is driven more by distinct microbial necromass inputs than differences in the selective removal of litter components. Our study highlights the role that microbial inputs during early litter decomposition can play in shaping surface litter contribution to soil organic matter as it responds to climate warming effects such as greater nitrogen availability.&amp;lt;/p&amp;gt;</p>", "keywords": ["DECOMPOSITION", "C-13", "CP&#8208", "necromass", "litter decomposition", "COMMUNITY COMPOSITION", "Soil", "CARBON SEQUESTRATION", "Taiga", "boreal forest", "bacteria", "C-13 NMR", "TEMPERATURE", "Biochemistry", " cell and molecular biology", "Soil Microbiology", "FUNGAL", "2. Zero hunger", "MAS C-13&#8208", "Fungi", "04 agricultural and veterinary sciences", "15. Life on land", "NMR", "6. Clean water", "climate transect", "Plant Leaves", "13. Climate action", "FOREST SOILS", "PLFA", "0401 agriculture", " forestry", " and fisheries", "fungi", "FATTY-ACIDS", "BULK CARBON", "LIGNIN"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.15420"}, {"href": "https://doi.org/10.1111/gcb.15420"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.15420", "name": "item", "description": "10.1111/gcb.15420", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.15420"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-16T00:00:00Z"}}, {"id": "10.1111/gcbb.12234", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:19:04Z", "type": "Journal Article", "created": "2014-11-11", "title": "Emission of CO2 from biochar-amended soils and implications for soil organic carbon", "description": "Abstract<p>Soil amendment with pyrogenic organic matter (PyOM), also named biochar, is claimed to sequester carbon (C). However, possible interactions between PyOM and native soil organic carbon (SOC) may accelerate the loss of SOC, thus reducing PyOM's C sequestration potential. We combined the results of 46 studies in a meta\uffe2\uff80\uff90analysis to investigate changes in CO2 emission of PyOM\uffe2\uff80\uff90amended soils and to identify the causes of these changes and the possible factors involved. Our results showed a statistically significant increase of 28% in CO2 emission from PyOM\uffe2\uff80\uff90amended soils. When grouped by PyOM C (PyC):SOC ratios, the group of studies with a ratio &gt;2 showed a significant increase in CO2 emissions, but those with a ratio &lt;2 showed no significant effect of PyOM application on CO2 emission. Our data are consistent with the hypothesis that increased CO2 emission after PyOM addition is additive and mainly derived from PyOM's labile C fractions. The PyC:SOC ratio provided the best predictor of increases in CO2 production after PyOM addition to soil. This meta\uffe2\uff80\uff90analysis highlights the importance of taking into account the amount of applied PyC in relation to SOC for designing future decomposition experiments.</p>", "keywords": ["Carbon sequestration", "Decomposition", "Priming", "13. Climate action", "Additive effects", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Pyrogenic organic matter", "Recalcitrance"]}, "links": [{"href": "https://doi.org/10.1111/gcbb.12234"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/GCB%20Bioenergy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcbb.12234", "name": "item", "description": "10.1111/gcbb.12234", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcbb.12234"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-12-18T00:00:00Z"}}, {"id": "10.1111/j.1365-2486.2006.01146.x", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-04-04T16:19:08Z", "type": "Journal Article", "created": "2006-04-03", "title": "Soil Carbon Balance In A Clonal Eucalyptus Plantation In Congo: Effects Of Logging On Carbon Inputs And Soil Co2 Efflux", "description": "Abstract<p>Soil CO2 efflux was measured in clear\uffe2\uff80\uff90cut and intact plots in order to quantify the impact of harvest on soil respiration in an intensively managed Eucalyptus plantation, and to evaluate the increase in heterotrophic component of soil respiration because of the decomposition of harvest residues. Soil CO2 effluxes showed a pronounced seasonal trend, which was well related to the pattern of precipitation and soil water content and were always significantly lower in the clear\uffe2\uff80\uff90cut plots than in the intact plots. On an annual basis, soil respiration represented 1.57 and 0.91\uffe2\uff80\uff83kgC\uffe2\uff80\uff83m\uffe2\uff88\uff922\uffe2\uff80\uff83yr\uffe2\uff88\uff921 in intact and clear\uffe2\uff80\uff90cut plots, respectively. During the first year following harvest, residues have lost 0.79\uffe2\uff80\uff83kgC\uffe2\uff80\uff83m\uffe2\uff88\uff922\uffe2\uff80\uff83yr\uffe2\uff88\uff921. Our estimate of heterotrophic respiration was calculated assuming that it was similar to soil respiration in the clear\uffe2\uff80\uff90cut area except that the decomposition of residues did not occur, and it was further corrected for differences in soil water content between intact and clear\uffe2\uff80\uff90cut plots and for the cessation of leaf and fine root turnover in clear cut. Heterotrophic respiration in clear\uffe2\uff80\uff90cut plots was estimated at 1.18\uffe2\uff80\uff83kgC\uffe2\uff80\uff83m\uffe2\uff88\uff922\uffe2\uff80\uff83yr\uffe2\uff88\uff921 whereas it was only 0.65\uffe2\uff80\uff83kgC\uffe2\uff80\uff83m\uffe2\uff88\uff922\uffe2\uff80\uff83yr\uffe2\uff88\uff921 in intact plots (41% of soil respiration). Assumptions and uncertainties with these calculations are discussed.</p>", "keywords": ["DECOMPOSITION", "0106 biological sciences", "550", "[SDE.MCG]Environmental Sciences/Global Changes", "F60 - Physiologie et biochimie v\u00e9g\u00e9tale", "FOREST MANAGEMENT", "01 natural sciences", "EUCALYPTUS", "http://aims.fao.org/aos/agrovoc/c_1301", "http://aims.fao.org/aos/agrovoc/c_2159", "http://aims.fao.org/aos/agrovoc/c_3047", "CLEAR-CUT", "2. Zero hunger", "Eucalyptus", "liti\u00e8re foresti\u00e8re", "http://aims.fao.org/aos/agrovoc/c_2847", "abattage d'arbres", "04 agricultural and veterinary sciences", "15. Life on land", "CARBON BUDGET", "[SDE.MCG] Environmental Sciences/Global Changes", "LITTERFALL", "d\u00e9gradation", "0401 agriculture", " forestry", " and fisheries", "carbone", "SOIL RESPIRATION", "http://aims.fao.org/aos/agrovoc/c_8500", "http://aims.fao.org/aos/agrovoc/c_2683"]}, "links": [{"href": "https://doi.org/10.1111/j.1365-2486.2006.01146.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-2486.2006.01146.x", "name": "item", "description": "10.1111/j.1365-2486.2006.01146.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-2486.2006.01146.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-04-03T00:00:00Z"}}, {"id": "10.1111/j.1365-2486.2009.01970.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:19:11Z", "type": "Journal Article", "created": "2009-05-08", "title": "Solar Uvb And Warming Affect Decomposition And Earthworms In A Fen Ecosystem In Tierra Del Fuego, Argentina", "description": "Abstract<p>Combined effects of co\uffe2\uff80\uff90occurring global climate changes on ecosystem responses are generally poorly understood. Here, we present results from a 2\uffe2\uff80\uff90year field experiment in aCarexfen ecosystem on the southernmost tip of South America, where we examined the effects of solar ultraviolet B (UVB, 280\uffe2\uff80\uff93315\uffe2\uff80\uff83nm) and warming on above\uffe2\uff80\uff90 and belowground plant production, C\uffe2\uff80\uff83:\uffe2\uff80\uff83N ratios, decomposition rates and earthworm population sizes. Solar UVB radiation was manipulated using transparent plastic filter films to create a near\uffe2\uff80\uff90ambient (90% of ambient UVB) or a reduced solar UVB treatment (15% of ambient UVB). The warming treatment was imposed passively by wrapping the same filter material around the plots resulting in a mean air and soil temperature increase of about 1.2\uffe2\uff80\uff83\uffc2\uffb0C. Aboveground plant production was not affected by warming, and marginally reduced at near\uffe2\uff80\uff90ambient UVB only in the second season. Aboveground plant biomass also tended to have a lower C\uffe2\uff80\uff83:\uffe2\uff80\uff83N ratio under near\uffe2\uff80\uff90ambient UVB and was differently affected at the two temperatures (marginal UVB \uffc3\uff97 temperature interaction). Leaf decomposition of one dominant sedge species (Carex curta) tended to be faster at near\uffe2\uff80\uff90ambient UVB than at reduced UVB. Leaf decomposition of a codominant species (Carex decidua) was significantly faster at near\uffe2\uff80\uff90ambient UVB; root decomposition of this species tended to be lower at increased temperature and interacted with UVB. We found, for the first time in a field experiment that epigeic earthworm density and biomass was 36% decreased by warming but remained unaffected by UVB radiation. Our results show that present\uffe2\uff80\uff90day solar UVB radiation and modest warming can adversely affect ecosystem functioning and engineers of this fen. However, results on plant biomass production also showed that treatment manipulations of co\uffe2\uff80\uff90occurring global change factors can be overridden by the local climatic situation in a given study year.</p>", "keywords": ["DECOMPOSITION", "EARTHWORMS", "0106 biological sciences", "CAREX CURTA", "ECOSYSTEM FUNCTIONING", "04 agricultural and veterinary sciences", "15. Life on land", "BIOMASS PRODUCTION", "SOIL HETEROTROPHS", "01 natural sciences", "CAREX DECIDUA", "13. Climate action", "DENDROBAENA OCTAEDRA", "https://purl.org/becyt/ford/1.6", "0401 agriculture", " forestry", " and fisheries", "GLOBAL WARMING", "GLOBAL CHANGE", "OZONE DEPLETION", "https://purl.org/becyt/ford/1"]}, "links": [{"href": "https://doi.org/10.1111/j.1365-2486.2009.01970.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-2486.2009.01970.x", "name": "item", "description": "10.1111/j.1365-2486.2009.01970.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-2486.2009.01970.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-09-04T00:00:00Z"}}, {"id": "10.1111/j.1365-2486.2011.02585.x", "type": "Feature", "geometry": null, "properties": {"license": "Restricted", "updated": "2026-04-04T16:19:13Z", "type": "Journal Article", "created": "2011-10-24", "title": "High Nitrogen Deposition Alters The Decomposition Of Bog Plant Litter And Reduces Carbon Accumulation", "description": "Abstract<p>Bogs are globally important sinks of atmospheric carbon (C) due to the accumulation of partially decomposed litter that forms peat. Because bogs receive their nutrients from the atmosphere, the world\uffe2\uff80\uff90wide increase of nitrogen (N) deposition is expected to affect litter decomposition and, ultimately, the rate of C accumulation. However, the mechanism of such biogeochemical alteration remains unclear and quantification of the effect of N addition on litter accumulation has yet to be done. Here, we show that 7\uffc2\uffa0years of N addition to a bog decreased the C\uffc2\uffa0:\uffc2\uffa0N ratio, increased the bacterial biomass and stimulated the activity of hydrolytic and oxidative enzymes in surface peat. Furthermore, N addition modified nutrient limitation of microbes during litter decomposition so that phosphorus became a primary limiting nutrient. Alteration of N release from decomposing litter affected bog water chemistry and the competitive balance between peat\uffe2\uff80\uff90forming mosses and vascular plants. We estimate that deposition of about 4 g\uffc2\uffa0N\uffc2\uffa0m\uffe2\uff88\uff922\uffc2\uffa0yr\uffe2\uff88\uff921 will cause a mean annual reduction of fresh litter C accumulation of about 40\uffc2\uffa0g\uffc2\uffa0m\uffe2\uff88\uff922 primarily as a consequence of decreased litter production from peat\uffe2\uff80\uff90forming mosses. Our findings show that N deposition interacts with both above and below ground components of biodiversity to threaten the ability of bogs to act as N\uffe2\uff80\uff90sinks, which may offset the positive effects of N on C accumulation seen in other ecosystems.</p>", "keywords": ["570", "Decomposition; litter accumulation modelling; microbial diversity; peatland; primary production; soil enzymatic activity; Sphagnum; vascular plants", "decomposition", "04 agricultural and veterinary sciences", "litter accumulation modelling", "soil enzymatic activity", "15. Life on land", "S phagnum", "13. Climate action", "microbial diversity", "0401 agriculture", " forestry", " and fisheries", "peatland", "vascular plants", "primary production"]}, "links": [{"href": "https://doi.org/10.1111/j.1365-2486.2011.02585.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-2486.2011.02585.x", "name": "item", "description": "10.1111/j.1365-2486.2011.02585.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-2486.2011.02585.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-11-23T00:00:00Z"}}, {"id": "10.1111/j.1461-0248.2009.01380.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:19:15Z", "type": "Journal Article", "created": "2009-09-15", "title": "Species-Specific Responses To Atmospheric Carbon Dioxide And Tropospheric Ozone Mediate Changes In Soil Carbon", "description": "Abstract<p>We repeatedly sampled the surface mineral soil (0\uffe2\uff80\uff9320\uffe2\uff80\uff83cm depth) in three northern temperate forest communities over an 11\uffe2\uff80\uff90year experimental fumigation to understand the effects of elevated carbon dioxide (CO2) and/or elevated phyto\uffe2\uff80\uff90toxic ozone (O3) on soil carbon (C). After 11\uffe2\uff80\uff83years, there was no significant main effect of CO2 or O3 on soil C. However, within the community containing only aspen (Populus tremuloides Michx.), elevated CO2 caused a significant decrease in soil C content. Together with the observations of increased litter inputs, this result strongly suggests accelerated decomposition under elevated CO2. In addition, an initial reduction in the formation of new (fumigation\uffe2\uff80\uff90derived) soil C by O3 under elevated CO2 proved to be only a temporary effect, mirroring trends in fine root biomass. Our results contradict predictions of increased soil C under elevated CO2 and decreased soil C under elevated O3 and should be considered in models simulating the effects of Earth\uffe2\uff80\uff99s altered atmosphere.</p>", "keywords": ["Decomposition", "Science", "Climate Change", "Aspen", "Ecology and Evolutionary Biology", "13 C", "Carbon Storage", "04 agricultural and veterinary sciences", "Carbon Dioxide", "Models", " Theoretical", "15. Life on land", "Carbon", "Trees", "Soil", "Ozone", "Populus", "Long-term", "Species Specificity", "13. Climate action", "Northern Temperate Forests", "0401 agriculture", " forestry", " and fisheries", "Global Change", "Environmental Monitoring"]}, "links": [{"href": "https://doi.org/10.1111/j.1461-0248.2009.01380.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1461-0248.2009.01380.x", "name": "item", "description": "10.1111/j.1461-0248.2009.01380.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1461-0248.2009.01380.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-10-13T00:00:00Z"}}, {"id": "10.1111/j.1757-1707.2010.01055.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:19:22Z", "type": "Journal Article", "created": "2010-07-09", "title": "Bioenergy By-Products As Soil Amendments? Implications For Carbon Sequestration And Greenhouse Gas Emissions", "description": "Abstract<p>An important but little understood aspect of bioenergy production is its overall impact on soil carbon (C) and nitrogen (N) cycling. Increased energy production from biomass will inevitably lead to higher input of its by\uffe2\uff80\uff90products to the soil as amendments or fertilizers. However, it is still unclear how these by\uffe2\uff80\uff90products will influence microbial transformation processes in soil, and thereby its greenhouse gas (GHG) balance and organic C stocks. In this study, we assess C and N dynamics and GHG emissions following application of different bioenergy by\uffe2\uff80\uff90products to soil. Ten by\uffe2\uff80\uff90products were selected from different bioenergy chains: anaerobic digestion (manure digestates), first generation biofuel by\uffe2\uff80\uff90products (rapeseed meal, distilled dried grains with solubles), second\uffe2\uff80\uff90generation biofuel by\uffe2\uff80\uff90products (nonfermentables from hydrolysis of different lignocellulosic materials) and pyrolysis (biochars). These by\uffe2\uff80\uff90products were added at a constant N rate (150\uffe2\uff80\uff83kg\uffe2\uff80\uff83N\uffe2\uff80\uff83ha\uffe2\uff88\uff921) to a sandy soil and incubated at 20\uffe2\uff80\uff83\uffc2\uffb0C. After 60 days, &gt;80% of applied C had been emitted as CO2 in the first\uffe2\uff80\uff90generation biofuel residue treatments. For second\uffe2\uff80\uff90generation biofuel residues this was approximately 60%, and for digestates 40%. Biochars were the most stable residues with the lowest CO2 loss (between 0.5% and 5.8% of total added C). Regarding N2O emissions, addition of first\uffe2\uff80\uff90generation biofuel residues led to the highest total N2O emissions (between 2.5% and 6.0% of applied N). Second\uffe2\uff80\uff90generation biofuel residues emitted between 1.0% and 2.0% of applied N, with the original feedstock material resulting in similar N2O emissions and higher C mineralization rates. Anaerobic digestates resulted in emissions &lt;1% of applied N. The two biochars used in this study decreased N2O emissions below background values. We conclude that GHG dynamics of by\uffe2\uff80\uff90products after soil amendment cannot be ignored and should be part of the lifecycle analysis of the various bioenergy production chains.</p>", "keywords": ["2. Zero hunger", "decomposition", "biomass", "04 agricultural and veterinary sciences", "15. Life on land", "part 2", "7. Clean energy", "biofuels", "6. Clean water", "feedlot cattle", "12. Responsible consumption", "corn", "dried distillers grains", "13. Climate action", "wheat", "11. Sustainability", "0401 agriculture", " forestry", " and fisheries", "ethanol", "energy"]}, "links": [{"href": "https://doi.org/10.1111/j.1757-1707.2010.01055.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/GCB%20Bioenergy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1757-1707.2010.01055.x", "name": "item", "description": "10.1111/j.1757-1707.2010.01055.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1757-1707.2010.01055.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-07-11T00:00:00Z"}}, {"id": "10.3389/feart.2021.642675", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:21:07Z", "type": "Journal Article", "created": "2021-03-29", "title": "Downstream Evolution of Particulate Organic Matter Composition From Permafrost Thaw Slumps", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Permafrost soils, which store almost half of the global belowground organic carbon (OC), are susceptible to thaw upon climate warming. On the Peel Plateau of northwestern Canada, the number and size of retrogressive thaw slumps (RTS) has increased in recent decades due to rising temperatures and higher precipitation. These RTS features caused by the rapid thaw of ice-rich permafrost release organic matter dominantly as particulate organic carbon (POC) to the stream network. In this study, we sampled POC and streambank sediments along a fluvial transect (\u223c12 km) downstream from two RTS features and assessed the composition and degradation status of the mobilized permafrost OC. We found that RTS features add old, Pleistocene-aged permafrost POC to the stream system that is traceable kilometers downstream. The POC released consists mainly of recalcitrant compounds that persists within stream networks, whereas labile compounds originate from the active layer and appear to largely degrade within the scar zone of the RTS feature. Thermokarst on the Peel Plateau is likely to intensify in the future, but our data suggest that most of the permafrost OC released is not readily degradable within the stream system and thus may have little potential for atmospheric evasion. Possibilities for the recalcitrant OC to degrade over decadal to millennial time scales while being transported via larger river networks, and within the marine environment, do however, still exist. These findings add to our understanding of the vulnerable Arctic landscapes and how they may interact with the global climate.</p></article>", "keywords": ["pyrolysis-GCMS", "organic carbon", "Science", "carbon", "Q", "15. Life on land", "01 natural sciences", "Arctic", "13. Climate action", "Arctic; climate; carbon; lipid biomarkers; Peel Plateau; permafrost; pyrolysis-GCMS; degradation", "Peel Plateau", "SDG 13 - Climate Action", "lipid biomarkers", "14. Life underwater", "climate", "permafrost", "degradation", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.3389/feart.2021.642675"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Earth%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/feart.2021.642675", "name": "item", "description": "10.3389/feart.2021.642675", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/feart.2021.642675"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-29T00:00:00Z"}}, {"id": "10.1139/x03-218", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:19:34Z", "type": "Journal Article", "created": "2004-04-01", "title": "The Effects Of Gaps And Liming On Forest Floor Decomposition And Soil C And N Dynamics In Afagus Sylvaticaforest", "description": "<p>Despite the importance of gaps in the dynamics and management of many forest types, very little is known about the medium- to long-term soil C and N dynamics associated with this disturbance. This study was designed to test the hypothesis that gap creation and lime application, a routine measure in many European forests to ameliorate soil acidity, lead to accelerated litter decomposition and thus a reduction in the forest floor and soil C and N pools. Four gaps were created in 1989 in a mature European beech (Fagus sylvatica L.) forest on acid soil with a moder humus, and lime (3 t dolomite\uffc2\uffb7ha&#150;1) was applied to two of these and surrounding areas. Litter and fine-root decomposition was measured in 1992&#150;1993 and 1996&#150;1998 using litterbags. Forest floor (L, F, and H layers) and mineral soil (0&#150;40 cm) C and N pools were determined in 1989 and 1997. Eight years following silvicultural treatments, there was no change in C and N over the entire forest soil profile including forest floor. Reductions in the F and H layers in limed gaps were compensated for by increases in soil C and N in the surface (0&#150;10 cm) mineral soil. Decomposition of F litter was significantly accelerated in limed gaps, leading to the development of a mull&#150;moder, whereas gap creation alone had no effect on mass loss of F material in litterbags. Gap size disturbances in this acid beech forest appear to have minimal influences on soil C and N stocks. However, when combined with liming, changes in the humus form and vertical distribution of soil C and N may occur.</p>", "keywords": ["0106 biological sciences", "Decomposition", "soil nutrient", "550", "Nitrogen", "Fagus sylvatica", "forest management", "Forestry", "04 agricultural and veterinary sciences", "910", "15. Life on land", "01 natural sciences", "Humus", "gap dynamics", "forest floor", "Floor decomposition", "hypothesis testing", "Fagus", "Soils", "0401 agriculture", " forestry", " and fisheries", "Litterbags", "Keywords: Carbon", "Reduction", "Limed gaps", "nutrient dynamics"]}, "links": [{"href": "https://openresearch-repository.anu.edu.au/bitstream/1885/88024/5/01_Cowling_The_effects_of_gaps_and_liming_2004.pdf.jpg"}, {"href": "https://doi.org/10.1139/x03-218"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Canadian%20Journal%20of%20Forest%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1139/x03-218", "name": "item", "description": "10.1139/x03-218", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1139/x03-218"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-03-01T00:00:00Z"}}, {"id": "10.1139/x88-221", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:19:35Z", "type": "Journal Article", "created": "2007-12-19", "title": "Biomass And Nutrients In Regenerating Woody Vegetation Following Whole-Tree And Conventional Harvest In A Northern Mixed Forest", "description": "<p> Biomass and nutrient contents of regenerating woody plants and litter fall were measured after a northern mixed conifer\uffe2\uff80\uff93hardwood forest was harvested by conventional and whole-tree methods. Before harvest, the central Ontario study site was occupied by a 95-year-old pine (Pinusresinosa, P. strobus) and aspen (Populustremuloides, P. grandidentata) stand growing on gently rolling, gravel-free outwash sands. Four years after harvest, aspen abundance increased 100-fold in both harvested areas, with higher densities after whole-tree harvest (WTH) (4.1\uffe2\uff80\uff82stems/m2) than after conventional harvest (CH) (2.7\uffe2\uff80\uff82stems/m2). No self-thinning of aspen occurred between 2 and 4 years after harvest. Total aboveground woody biomass accumulated at 2.0\uffe2\uff80\uff82t\uffe2\uff80\uffa2ha\uffe2\uff88\uff921\uffe2\uff80\uffa2year\uffe2\uff88\uff921 in the WTH area and 1.5\uffe2\uff80\uff82t\uffe2\uff80\uffa2ha\uffe2\uff88\uff921\uffe2\uff80\uffa2year\uffe2\uff88\uff921 in the CH area; the preharvest rate was 2.0\uffe2\uff80\uff82t\uffe2\uff80\uffa2ha\uffe2\uff88\uff921\uffe2\uff80\uffa2year\uffe2\uff88\uff921. Peak autumn litter production occurred earlier in the harvested areas than in an adjacent uncut area. Cycling of N and K in litter fall returned to preharvest rates after 4 years. Cycling of Ca in litter fall was lower after WTH than after CH. Vegetation uptake of N and K (litter fall plus woody biomass) in the harvested areas in year 4 exceeded the preharvest value. Increased N accumulation in woody biomass (3.0\uffe2\uff80\uff82kg\uffe2\uff80\uffa2ha\uffe2\uff88\uff921\uffe2\uff80\uffa2year\uffe2\uff88\uff921 before harvest, 10.6\uffe2\uff80\uff82kg\uffe2\uff80\uffa2ha\uffe2\uff88\uff921\uffe2\uff80\uffa2year\uffe2\uff88\uff921 after WTH) would place a relatively greater demand on forest floor N pools in the WTH than in the CH area owing to lack of N input in logging slash. Although WTH did not reduce initial rates of biomass production, Populus spp. had lower concentrations of N, Ca, and Mg in the WTH area than in the CH area. There may be a danger that WTH on less fertile sites in the region will produce dense, unproductive aspen stands with low rates of self-thinning. </p>", "keywords": ["0106 biological sciences", "Spermatophyta", "Angiosperms", "Broadleaves", "Forest litter", "Microorganisms", "Coniferopsida: Gymnospermae", "Gymnosperms", "01 natural sciences", "logging", "Dicots", "pines", "nutrients", "Spermatophytes", "Natural regeneration", "Plant nutrition", "Plantae", "Forest Sciences", "Vascular Plants", "biomass", "Stand characteristics", "Salicaceae: Dicotyledones", "thinning", "Soil morphology", "Cycling", "Forestry", "Pinus Resinosa Pinus Strobus Populus Tremuloides Populus Grandidentata Forest Biomass Energy Forest Products", "Plants", "15. Life on land", "Conifers", "Angiospermae", "composition", "whole tree logging", "nutrient reserves", "natural thinning", "measurement", "ecology"], "contacts": [{"organization": "Hendrickson, O.Q.", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1139/x88-221"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Canadian%20Journal%20of%20Forest%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1139/x88-221", "name": "item", "description": "10.1139/x88-221", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1139/x88-221"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1988-11-01T00:00:00Z"}}, {"id": "10.1371/journal.pone.0077212", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:19:50Z", "type": "Journal Article", "created": "2013-10-16", "title": "Carbon-Degrading Enzyme Activities Stimulated By Increased Nutrient Availability In Arctic Tundra Soils", "description": "Climate-induced warming of the Arctic tundra is expected to increase nutrient availability to soil microbes, which in turn may accelerate soil organic matter (SOM) decomposition. We increased nutrient availability via fertilization to investigate the microbial response via soil enzyme activities. Specifically, we measured potential activities of seven enzymes at four temperatures in three soil profiles (organic, organic/mineral interface, and mineral) from untreated native soils and from soils which had been fertilized with nitrogen (N) and phosphorus (P) since 1989 (23 years) and 2006 (six years). Fertilized plots within the 1989 site received annual additions of 10 g N \u00b7 m(-2) \u00b7 year(-1) and 5 g P \u00b7 m(-2) \u00b7 year(-1). Within the 2006 site, two fertilizer regimes were established--one in which plots received 5 g N \u00b7 m(-2) \u00b7 year(-1) and 2.5 g P \u00b7 m(-2) \u00b7 year(-1) and one in which plots received 10 g N \u00b7 m(-2) \u00b7 year(-1) and 5 g P \u00b7 m(-2) \u00b7 year(-1). The fertilization treatments increased activities of enzymes hydrolyzing carbon (C)-rich compounds but decreased phosphatase activities, especially in the organic soils. Activities of two enzymes that degrade N-rich compounds were not affected by the fertilization treatments. The fertilization treatments increased ratios of enzyme activities degrading C-rich compounds to those for N-rich compounds or phosphate, which could lead to changes in SOM chemistry over the long term and to losses of soil C. Accelerated SOM decomposition caused by increased nutrient availability could significantly offset predicted increased C fixation via stimulated net primary productivity in Arctic tundra ecosystems.", "keywords": ["550", "Nitrogen", "Science", "Climate", "Microbial Consortia", "Soil", "soil organic matter", "Fertilizers", "Soil Microbiology", "2. Zero hunger", "decomposition", "Arctic Regions", "Q", "R", "Temperature", "Phosphorus", "04 agricultural and veterinary sciences", "15. Life on land", "Carbon", "Phosphoric Monoester Hydrolases", "soil organic carbon", "13. Climate action", "Medicine", "0401 agriculture", " forestry", " and fisheries", "Arctic tundra ecosystem", "Glucosidases", "Research Article", "Peptide Hydrolases"]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0077212"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0077212", "name": "item", "description": "10.1371/journal.pone.0077212", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0077212"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-10-15T00:00:00Z"}}, {"id": "10.3390/v11070611", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:21:35Z", "type": "Journal Article", "created": "2019-06-12", "title": "Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarum\u2014A Novel Lineage of Lactobacillus Phages Comprising Five New Members", "description": "<p>Lactobacillus plantarum is a bacterium with promising applications to the food industry and agriculture and probiotic properties. So far, bacteriophages of this bacterium have been moderately addressed. We examined the diversity of five new L. plantarum phages via whole genome shotgun sequencing and in silico protein predictions. Moreover, we looked into their phylogeny and their potential genomic similarities to other complete phage genome records through extensive nucleotide and protein comparisons. These analyses revealed a high degree of similarity among the five phages, which extended to the vast majority of predicted virion-associated proteins. Based on these, we selected one of the phages as a representative and performed transmission electron microscopy and structural protein sequencing tests. Overall, the results suggested that the five phages belong to the family Myoviridae, they have a long genome of 137.973-141.344 bp, a G/C content of 36,3-36,6% that is quite distinct from their host&amp;rsquo;s, and, surprisingly, seven to 15 tRNAs. Only an average 41/174 of their predicted genes were assigned a function. The comparative analyses unraveled considerable genetic diversity for the five L. plantarum phages of this study. Hence, the new genus &amp;ldquo;Semelevirus&amp;rdquo; was proposed, which comprises exclusively the five phages. This novel lineage of Lactobacillus phages provides further insight into the genetic heterogeneity of phages infecting Lactobacillus sp.. The five new Lactobacillus phages have a potential value for the development of more robust starters through, for example, the selection of mutants insensitive to phage infections. The five phages could also form part of phage cocktails, which producers would apply in different stages of L. plantarum fermentations in order to create a range of organoleptic outputs.</p>", "keywords": ["0301 basic medicine", "Annotation", "comparative genomics", "Genome", " Viral", "<i>Lactobacillus plantarum</i>", "Microbiology", "Article", "Isolation", "diversity", "03 medical and health sciences", "Microscopy", " Electron", " Transmission", "DNA Packaging", "phage", "Bacteriophages", "Phylogeny", "Viral Structural Proteins", "2. Zero hunger", "Diversity", "Base Composition", "0303 health sciences", "Comparative genomics", "new genus", "Genomics", "Sequence Analysis", " DNA", "QR1-502", "virology", "Phylogenetics", "phylogenetics", "Lactobacillus", "annotation", "Myoviridae", "Phage", "New genus", "isolation", "Lactobacillus plantarum"]}, "links": [{"href": "http://www.mdpi.com/1999-4915/11/7/611/pdf"}, {"href": "https://www.mdpi.com/1999-4915/11/7/611/pdf"}, {"href": "https://doi.org/10.3390/v11070611"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Viruses", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/v11070611", "name": "item", "description": "10.3390/v11070611", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/v11070611"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-06-11T00:00:00Z"}}, {"id": "10.1890/12-1760.1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:20:20Z", "type": "Journal Article", "created": "2013-07-09", "title": "Earthworm Effects On The Incorporation Of Litter C And N Into Soil Organic Matter In A Sugar Maple Forest", "description": "<p>To examine the mechanisms of earthworm effects on forest soil C and N, we double\uffe2\uff80\uff90labeled leaf litter with13C and15N, applied it to sugar maple forest plots with and without earthworms, and traced isotopes into soil pools. The experimental design included forest plots with different earthworm community composition (dominated byLumbricus terrestrisorL. rubellus). Soil carbon pools were 37% lower in earthworm\uffe2\uff80\uff90invaded plots largely because of the elimination of the forest floor horizons, and mineral soil C:N was lower in earthworm plots despite the mixing of high C:N organic matter into soil by earthworms. Litter disappearance over the first winter\uffe2\uff80\uff93spring was highest in theL. terrestris(T) plots, but during the warm season, rapid loss of litter was observed in bothL. rubellus(R) and T plots. After two years, 22.0% \uffc2\uffb1 5.4% of13C released from litter was recovered in soil with no significant differences among plots. Total recovery of added13C (decaying litter plus soil) was much higher in no\uffe2\uff80\uff90worm (NW) plots (61\uffe2\uff80\uff9368%) than in R and T plots (20\uffe2\uff80\uff9329%) as much of the litter remained in the former whereas it had disappeared in the latter. Much higher percentage recovery of15N than13C was observed, with significantly lower values for T than R and NW plots. Higher overwinter earthworm activity in T plots contributed to lower soil N recovery. In earthworm\uffe2\uff80\uff90invaded plots isotope enrichment was highest in macroaggregates and microaggregates whereas in NW plots silt plus clay fractions were most enriched. The net effect of litter mixing and priming of recalcitrant soil organic matter (SOM), stabilization of SOM in soil aggregates, and alteration of the soil microbial community by earthworm activity results in loss of SOM and lowering of the C:N ratio. We suggest that earthworm stoichiometry plays a fundamental role in regulating C and N dynamics of forest SOM.</p>", "keywords": ["Time Factors", "Nitrogen", "TEMPERATE HARDWOOD FOREST", "New York", "Acer", "C:N ratio", "Trees", "OLD-GROWTH FOREST", "Soil", "litter", "EXOTIC EARTHWORMS", "Animals", "NORTHEASTERN FORESTS", "Oligochaeta", "CARBON DYNAMICS", "Ecosystem", "2. Zero hunger", "decomposition", "NITROGEN DEPOSITION", "Ecology", "Lumbricus", "MICROBIAL BIOMASS", "04 agricultural and veterinary sciences", "15. Life on land", "DECIDUOUS FOREST", "Carbon", "stoichiometry", "aggregate", "0401 agriculture", " forestry", " and fisheries", "LUMBRICUS-TERRESTRIS", "Environmental Sciences", "CENTRAL NEW-YORK", "Environmental Monitoring"]}, "links": [{"href": "https://doi.org/10.1890/12-1760.1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecological%20Applications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1890/12-1760.1", "name": "item", "description": "10.1890/12-1760.1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1890/12-1760.1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-07-01T00:00:00Z"}}, {"id": "10.2134/jeq2003.6130", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:20:32Z", "type": "Journal Article", "created": "2010-06-14", "description": "ABSTRACT<p>Vegetated filter strips (VFS) are used recently for removal, at or near the source, of sediment and sediment\uffe2\uff80\uff90bound chemicals from cropland runoff. Vegetation within the flowpath increases water infiltration and decreases water turbulence, thus enhancing pollutant removal by sedimentation within filter media and infiltration through the filter surface. Field experiments have been conducted to examine the efficiency of vegetated filter strips for phosphorus removal from cropland runoff with 20 filters with varying length (2 to 15 m), slope (2.3 and 5%), and vegetated cover, including bare\uffe2\uff80\uff90soil plots as control. Artificial runoff used in this study had an average phosphorus concentration of 2.37 mg L\uffe2\uff88\uff921 and a sediment concentration of 2700 mg L\uffe2\uff88\uff921 The average phosphorus trapping efficiency of all vegetated filters was 61% and ranged from 31% in a 2\uffe2\uff80\uff90m filter to 89% in a 15\uffe2\uff80\uff90m filter. Filter length has been found to be the predominant factor affecting P trapping in VFS. The rate of inflow, type of vegetation, and density of vegetation coverage had secondary influences on P removal. Short filters (2 and 5 m), which are somewhat effective in sediment removal, are much less effective in P removal. Increasing the filter length beyond 15 m is ineffective in enhancing sediment removal but is expected to further enhance P removal. Sediment deposition, infiltration, and plant adsorption are the primary mechanisms for phosphorus trapping in VFS.</p>", "keywords": ["Biodegradation", " Environmental", "Rain", "Water Movements", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Phosphorus", "04 agricultural and veterinary sciences", "Plants", "15. Life on land", "Fertilizers", "Filtration", "6. Clean water"]}, "links": [{"href": "https://doi.org/10.2134/jeq2003.6130"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environment%20Quality", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2134/jeq2003.6130", "name": "item", "description": "10.2134/jeq2003.6130", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2134/jeq2003.6130"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2003-01-01T00:00:00Z"}}, {"id": "10.3390/ma15207205", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:21:24Z", "type": "Journal Article", "created": "2022-10-17", "title": "Performance of biodegradable biochar-added and bio-based plastic clips for growing tomatoes.", "description": "<p>Increasing quantities of waste from using conventional plastic in agriculture and horticulture is one of the most pressing issues nowadays. Conventional plastic accessories (e.g., mulching films, clips, pots, strings, etc.) are typically fossil-derived, non-biodegradable and difficult to recycle after their use. Therefore, there is a need for biodegradable and bio-based alternatives with similar properties to conventional plastics, which can be disposed of through degradation in water, soil or compost under specific conditions. This work investigated the properties and the performance of biodegradable biochar-added and bio-based stem and arch support clips. In addition, the investigated clips were composted with tomato residues during 16 week laboratory composting. The scope of this work included: (1) the production of stem and arch support clips in a pilot installation using injection molding technology, (2) an analysis of their chemical composition, biodegradability, disintegration and phytotoxicity, (3) an evaluation of their performance in the greenhouse cultivation of tomatoes and (4) an evaluation of the composting of the clips with on-farm organic waste as an end-of-waste management method. The stem support clips during industrial composting (58 \uffc2\uffb0C) degraded at 100% after 20 weeks, whereas during home composting (30 \uffc2\uffb0C) the degradation was slow, and after 48 weeks the maximum weight loss was 5.43%. Disintegration during industrial composting resulted in 100% fragmentation into particles with sizes less than 2 mm. Phytotoxicity tests demonstrated that the substrates after industrial and home composting did not have a negative effect on the growth of the test plants (i.e., mustard, wheat, cuckooflower). The biochar-added stem support clips proved to be satisfactory alternatives to conventional non-biodegradable, fossil-derived clips and can be disposed of through composting. However, more work is needed to determine the optimal conditions for composting to ensure rapid degradation of the clips in relevant environments.</p>", "keywords": ["Arch support clips", "2. Zero hunger", "Composting", "Horticulture", "Biodegradable plastics", "01 natural sciences", "Article", "6. Clean water", "12. Responsible consumption", "Biochar", "Biodegradation", "Stem support clips", "biodegradable plastics; biochar; biodegradation; composting; horticulture; stem support clips; arch support clips", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://www.mdpi.com/1996-1944/15/20/7205/pdf"}, {"href": "https://www.mdpi.com/1996-1944/15/20/7205/pdf"}, {"href": "https://doi.org/10.3390/ma15207205"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Materials", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/ma15207205", "name": "item", "description": "10.3390/ma15207205", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/ma15207205"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-10-16T00:00:00Z"}}, {"id": "10.5061/dryad.m63xsj45g", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:21:59Z", "type": "Dataset", "title": "Plant litter chemistry controls coarse-textured soil carbon dynamics", "description": "unspecifiedThe data are archieved as a .csv text file.", "keywords": ["2. Zero hunger", "Decomposition", "Ecosystem function and services", "plant litter", "13. Climate action", "soil organic matter", "soil carbon storage", "Carbon cycle", "FOS: Earth and related environmental sciences", "15. Life on land", "Priming effect"], "contacts": [{"organization": "Huys, Raoul, Poirier, Vincent, Bourget, Malo, Roumet, Catherine, Hattenschwiler, Stephan, Fromin, Nathalie, Munson, Alison, Freschet, Gr\u00e9goire,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.m63xsj45g"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.m63xsj45g", "name": "item", "description": "10.5061/dryad.m63xsj45g", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.m63xsj45g"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-09-15T00:00:00Z"}}, {"id": "10.2307/2640985", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:20:56Z", "type": "Journal Article", "created": "2006-04-17", "description": "Elevated atmospheric CO2 has the potential to increase the production and alter the chemistry of organic substrates entering soil from plant production, the magnitude of which is constrained by soil-N availability. Because microbial growth in soil is limited by substrate inputs from plant production, we reasoned that changes in the amount and chemistry of these organic substrates could affect the composition of soil microbial com- munities and the cycling of N in soil. We studied microbial community composition and soil-N transformations beneath Populus tremuloides Michx. growing under experimental atmospheric CO2 (35.7 and 70.7 Pa) and soil-N-availability (low N 5 61 ng N\u00b7g 21 \u00b7d 21 and high N 5 319 ng N\u00b7g 21 \u00b7d 21 ) treatments. Atmospheric CO2 concentration was modified in large, open-top chambers, and we altered soil-N availability in open-bottom root boxes by mixing different proportions of A and C horizon material. We used phospholipid fatty-acid analysis to gain insight into microbial community composition and coupled this analysis to measurements of soil-N transformations using 15 N-pool dilution techniques. The infor- mation presented here is part of an integrated experiment designed to elucidate the phys- iological mechanisms controlling the flow of C and N in the plant-soil system. Our ob- jectives were (1) to determine whether changes in plant growth and tissue chemistry alter microbial community composition and soil-N cycling in response to increasing atmospheric CO2 and soil-N availability and (2) to integrate the results of our experiment into a synthesis of elevated atmospheric CO2 and the cycling of C and N in terrestrial ecosystems. After 2.5 growing seasons, microbial biomass, gross N mineralization, microbial im- mobilization, and nitrification (gross and net) were equivalent at ambient and elevated CO2, suggesting that increases in fine-root production and declines in fine-root N concentration were insufficient to alter the influence of native soil organic matter on microbial physiology; this was the case in both low- and high-N soil. Similarly, elevated CO2 did not alter the proportion of bacterial, actinomycetal, or fungal phospholipid fatty acids in low-N or high-N soil, indicating that changes in substrate input from greater plant growth under elevated CO2 did not alter microbial community composition. Our results differ from a substantial number of studies reporting increases and decreases in soil-N cycling under elevated CO 2. From our analysis, it appears that soil-N cycling responds to elevated atmospheric CO 2 in experimental situations where plant roots have fully colonized the soil and root-associated C inputs are sufficient to modify the influence of native soil organic matter on microbial physiology. In young developing ecosystems where plant roots have not fully exploited the soil, microbial metabolism appears to be regulated by relatively large pools of soil organic matter, rather than by the additional input of organic substrates under elevated CO 2.", "keywords": ["measurement-", "soil microorganisms", "Ecology and Evolutionary Biology", "nitrogen-: cycling-", "feedback", "microbial community composition", "techniques-", "Environmental-Sciences)", "01 natural sciences", "litter-plant", "biomass-", "gross and net", "124-38-9: CARBON DIOXIDE", "Spermatophytes-", "cycling-", "soil-organic-matter", "mineralization", "Spermatophyta-", "responses-", "phospholipid-fatty-acids", "2. Zero hunger", "Climatology- (Environmental-Sciences)", "Angiosperms-", "Angiospermae-", "Plants-", "global climate change", "microbial immobilization", "nutrient-", "Soil-Science", "6. Clean water", "metabolism-", "soil-N transformations", "transformation-", "substrates-", "7727-37-9: NITROGEN", "atmosphere-", "elevated atmospheric", "570", "nitrification-", "nitrogen immobilization", "Science", "Vascular-Plants", "poplars-", "phospholipid fatty acids (PFLAs)", "carbon-dioxide", "growth-", "soil-microbial-community-composition", "Salicaceae-: Dicotyledones-", "microbial-flora", "Populus tremuloides", "Plantae-", "organic-matter", "consortia-", "0105 earth and related environmental sciences", "communities-", "ecosystem", "analysis-", "atmospheric CO2 and soil-N availability", "soil-availability", "mineralization-", "carbon dioxide", "fatty-acids", "15. Life on land", "substrate-input", "Populus-tremuloides (Salicaceae-)", "13. Climate action", "roots-", "Terrestrial-Ecology (Ecology-", "composition-", "Dicots-", "immobilization-", "seasons-", "ecosystems-"], "contacts": [{"organization": "Zak, Donald R., Pregitzer, Kurt S., Curtis, Peter S., Holmes, William E.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.2307/2640985"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecological%20Applications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2307/2640985", "name": "item", "description": "10.2307/2640985", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2307/2640985"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2000-02-01T00:00:00Z"}}, {"id": "10.5194/tc-12-3293-2018", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:22:21Z", "type": "Journal Article", "created": "2018-03-09", "title": "Carbonaceous material export from Siberian permafrost tracked across the Arctic Shelf using Raman spectroscopy", "description": "<p>Abstract. Warming-induced erosion of permafrost from Eastern Siberia mobilises large amounts of organic carbon and delivers it to the East Siberian Arctic Shelf (ESAS). In this study Raman spectroscopy of Carbonaceous Material (CM) was used to characterise, identify and track the most recalcitrant fraction of the organic load. 1463 spectra were obtained from surface sediments collected across the ESAS and automatically analysed for their Raman peaks. Spectra were classified by their peak areas and widths into Disordered, Intermediate, Mildly Graphitised and Highly Graphitised groups, and the distribution of these classes was investigated across the shelf. Disordered CM was most prevalent in a permafrost core from Kurungnakh Island, and from areas known to have high rates of coastal erosion. Sediments from outflows of the Indigirka and Kolyma rivers were generally enriched in Intermediate CM. These different sediment sources were identified and distinguished along an E-W transect using their Raman spectra, showing that sediment is not homogenised on the ESAS. Distal samples, from the ESAS slope, contained greater amounts of Highly Graphitised CM compared to the rest of the shelf, attributable to degradation or, more likely, winnowing processes offshore. The presence of all four spectral classes in distal sediments demonstrates that CM degrades much slower than lipid biomarkers and other traditional tracers of terrestrial organic matter, and shows that alongside degradation of the more labile organic matter component there is also conservative transport of carbon across the shelf toward the deep ocean. Thus, carbon cycle calculations must consider the nature as well as the amount of carbon liberated from thawing permafrost and other erosional settings.                         </p>", "keywords": ["Ocean", "River", "QE1-996.5", "550", "500", "Terrigenous Organic-Matter", "Geology", "Terrestrial", "Old Carbon", "01 natural sciences", "Sediments", "Environmental sciences", "Degradation", "13. Climate action", "Laptev Sea", "Meteorology & Atmospheric Sciences", "Graphite", "GE1-350", "0405 Oceanography", "14. Life underwater", "Black Carbon", "0406 Physical Geography And Environmental Geoscience", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://tc.copernicus.org/articles/12/3293/2018/tc-12-3293-2018.pdf"}, {"href": "https://doi.org/10.5194/tc-12-3293-2018"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Cryosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.5194/tc-12-3293-2018", "name": "item", "description": "10.5194/tc-12-3293-2018", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5194/tc-12-3293-2018"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-03-09T00:00:00Z"}}, {"id": "10.3389/fmicb.2013.00146", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:21:09Z", "type": "Journal Article", "created": "2013-06-11", "description": "The activities of extracellular enzymes, the proximate agents of decomposition in soils, are known to depend strongly on temperature, but less is known about how they respond to changes in precipitation patterns, and the interaction of these two components of climate change. Both enzyme production and turnover can be affected by changes in temperature and soil moisture, thus it is difficult to predict how enzyme pool size may respond to altered climate. Soils from the Boston-Area Climate Experiment (BACE), which is located in an old field (on abandoned farmland), were used to examine how climate variables affect enzyme activities and microbial biomass carbon (MBC) in different seasons and in soils exposed to a combination of three levels of precipitation treatments (ambient, 150% of ambient during growing season, and 50% of ambient year-round) and four levels of warming treatments (unwarmed to ~4\u00b0C above ambient) over the course of a year. Warming, precipitation and season had very little effect on potential enzyme activity. Most models assume that enzyme dynamics follow microbial biomass, because enzyme production should be directly controlled by the size and activity of microbial biomass. We observed differences among seasons and treatments in mass-specific potential enzyme activity, suggesting that this assumption is invalid. In June 2009, mass-specific potential enzyme activity, using chloroform fumigation-extraction MBC, increased with temperature, peaking under medium warming and then declining under the highest warming. This finding suggests that either enzyme production increased with temperature or turnover rates decreased. Increased maintenance costs associated with warming may have resulted in increased mass-specific enzyme activities due to increased nutrient demand. Our research suggests that allocation of resources to enzyme production could be affected by climate-induced changes in microbial efficiency and maintenance costs.", "keywords": ["2. Zero hunger", "570", "decomposition", "550", "microbial biomass", "Nitrogen", "carbon", "enzymes", "temperature", "04 agricultural and veterinary sciences", "precipitation", "15. Life on land", "Microbiology", "nitrogen", "Carbon", "QR1-502", "6. Clean water", "Enzymes", "13. Climate action", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2013.00146"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2013.00146", "name": "item", "description": "10.3389/fmicb.2013.00146", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2013.00146"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-01-01T00:00:00Z"}}, {"id": "10.3389/fmicb.2016.01893", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:21:09Z", "type": "Journal Article", "created": "2016-11-28", "title": "Long-Term Application Of Bioorganic Fertilizers Improved Soil Biochemical Properties And Microbial Communities Of An Apple Orchard Soil", "description": "Soil biochemical properties and microbial communities are usually considered as important indicators of soil health because of their association with plant nutrition. In this study, we investigated the impact of long-term application of bioorganic fertilizer (BOF) on soil biochemical properties and microbial communities in the apple orchard soil of the Loess Plateau. The experiment included three treatments: (1) control without fertilization (CK); (2) chemical fertilizer application (CF); and (3) bioorganic fertilizer application (BOF). The high throughput sequencing was used to examine the bacterial and fungal communities in apple orchard soil. The results showed that the BOF treatment significantly increased the apple yield during the experimental time (2009-2015). The application of BOF significantly increased the activities of catalase and invertase compared to those in CK and CF treatments. The high throughput sequencing data showed that the application of BOF changed the microbial community composition of all soil depths considered (0-20 cm, 20-40 cm, and 40-60 cm), e.g., the relative abundance of bio-control bacteria (Xanthomonadales, Lysobacter, Pseudomonas, and Bacillus), Proteobacteria, Bacteroidetes, Ohtaekwangia, Ilyonectria, and Lecanicillium was increased while that of Acidobacteria, Chloroflexi, Gp4, Gp6 and Sphaerobacter was decreased. The increase in apple yield after the application of BOF might be due to increase in organic matter, total nitrogen and catalase and invertase activities of soil and change in the bacterial community composition by enriching Bacillus, Pseudomonas, Lysobacter, and Ohtaekwangia. These results further enhance the understanding on how BOFs alter soil microbial community composition to stimulate soil productivity.", "keywords": ["2. Zero hunger", "composition", "soil microbes", "soil depth", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Bioorganic fertilizers", "Apple yield", "Microbiology", "QR1-502", "6. Clean water"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2016.01893"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2016.01893", "name": "item", "description": "10.3389/fmicb.2016.01893", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2016.01893"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-11-28T00:00:00Z"}}, {"id": "10.3390/ijms21010228", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:21:22Z", "type": "Journal Article", "created": "2019-12-30", "title": "How Vine Shoots as Fillers Impact the Biodegradation of PHBV-Based Composites", "description": "<p>Vine shoots are lignocellulosic agricultural residues. In addition to being an interesting source of polyphenols, they can be used as fillers in a poly(3-hydroxybutyrate-3-hydroxyvalerate) (PHBV) matrix to decrease the overall cost and to propose an alternative to non-biodegradable fossil-based materials. The objective of the present work was to investigate how the incorporation of vine shoots fillers and a preliminary polyphenol extraction step could impact the biodegradability of biocomposites. Biocomposites (20 wt %) were produced by microcompounding. The biodegradation of materials was assessed by respirometric tests in soil. The negative impact of polyphenols on the biodegradability of vine shoots was confirmed. This was supported by crystallinity measurements and scanning electron microscopy (SEM) observations, which showed no difference in structure nor morphology between virgin and exhausted vine shoots particles. The incorporation of vine shoots fillers in PHBV slightly accelerated the overall biodegradation kinetics. All the biocomposites produced were considered fully biodegradable according to the French and European standard NF EN 17033, allowing the conclusion that up-cycling vine shoots for the production of lignocellulosic fillers is a promising strategy to provide biodegradable materials in natural conditions. Moreover, in a biorefinery context, polyphenol extraction from vine shoots has the advantage of improving their biodegradability.</p>", "keywords": ["0301 basic medicine", "biocomposites", "660", "polyphenols extraction", "Polyesters", "Polyphenols", "600", "02 engineering and technology", "[SPI.MAT] Engineering Sciences [physics]/Materials", "15. Life on land", "biodegradation", "Lignin", "Article", "510", "[SPI.MAT]Engineering Sciences [physics]/Materials", "poly(3-hydroxybutyrate-3-hydroxyvalerate)", "vine shoots", "03 medical and health sciences", "natural fibers", "Biodegradation", " Environmental", "Vitis", "0210 nano-technology", "Plant Shoots"]}, "links": [{"href": "http://www.mdpi.com/1422-0067/21/1/228/pdf"}, {"href": "https://www.mdpi.com/1422-0067/21/1/228/pdf"}, {"href": "https://doi.org/10.3390/ijms21010228"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/International%20Journal%20of%20Molecular%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/ijms21010228", "name": "item", "description": "10.3390/ijms21010228", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/ijms21010228"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-12-28T00:00:00Z"}}, {"id": "10.3390/microorganisms8060889", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:21:25Z", "type": "Journal Article", "created": "2020-06-12", "title": "Complete Genome of Isoprene Degrading Nocardioides sp. WS12", "description": "<p>Isoprene is a climate-active gas whose wide-spread global production stems mostly from terrestrial plant emissions. The biodegradation of isoprene is carried out by a number of different bacteria from a wide range of environments. This study investigates the genome of a novel isoprene degrading bacterium Nocardioides sp. WS12, isolated from soil associated with Salix alba (Willow), a tree known to produce high amounts of isoprene. The Nocardioides sp. WS12 genome was fully sequenced, revealing the presence of a complete isoprene monooxygenase gene cluster, along with associated isoprene degradation pathway genes. Genes associated with rubber degradation were also present, suggesting that Nocardioides sp. WS12 may also have the capacity to degrade poly-cis-1,4-isoprene.</p>", "keywords": ["0301 basic medicine", "0303 health sciences", "QH301-705.5", "Brief Report", "rubber", "<i>Nocardioides</i>", "15. Life on land", "isolate", "03 medical and health sciences", "13. Climate action", "Biology (General)", "isoprene", "genome", "degradation"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/75608/1/Published_Version.pdf"}, {"href": "https://www.mdpi.com/2076-2607/8/6/889/pdf"}, {"href": "https://doi.org/10.3390/microorganisms8060889"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microorganisms", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/microorganisms8060889", "name": "item", "description": "10.3390/microorganisms8060889", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/microorganisms8060889"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-06-12T00:00:00Z"}}, {"id": "10.4141/s98-081", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:21:47Z", "type": "Journal Article", "created": "2011-04-23", "title": "Effects Of Forest Soil Compaction And Organic Matter Removal On Leaf Litter Decomposition In Central British Columbia", "description": "<p> As part of the long-term soil productivity study in central British Columbia, we examined the effect of soil compaction and organic matter removal on trembling aspen (Populus tremuloides Michx.) litter decomposition. We compared three levels of organic matter removal (stem-only, whole-tree harvest, and scalped mineral soil) and two levels of compaction (no compaction and heavy compaction) in a factorial design replicated as blocks on three sites. Whole-tree harvesting significantly increased litter decomposition rates compared to stem-only (by 36%) and scalped (by 41%) treatments. Soil compaction had inconsistent effects on decomposition rates (k) for forest floor and scalped treatments and, overall, did not significantly affect litter decomposition rates. Litter on scalped plots had higher rates of nutrient translocation than litter on forest floors. We found the treatments altered soil heat sums, so changes in temperatures at the soil surface might be partly responsible for the changes in decomposition rates. We could not detect differences in soil mesofauna populations collected from the litter bags, so treatment effects on fauna probably had less influence than microclimate on decomposition rates. The effects of these early changes in litter decomposition on biological productivity will be part of the ongoing long-term soil productivity study. Key words: Litter decomposition, soil compaction, scalping, whole-tree harvest, nutrient translocation </p>", "keywords": ["0106 biological sciences", "leaf-litter-decomposition: organic-matter-removal", "nutrients-", "Environmental-Sciences)", "01 natural sciences", "harvesting-", "translocation-", "populus-tremuloides", "soil-organic-matter", "Spermatophytes-", "Spermatophyta-", "Angiosperms-", "Angiospermae-", "Plants-", "heat-sums", "04 agricultural and veterinary sciences", "Soil-Science", "British-Columbia (Canada-", "North-America", "Nearctic-region)", "compaction-", "soil-compaction", "decomposition-", "microclimate-", "Vascular-Plants", "poplars-", "forests-", "movement-in-soil", "treatment-", "sustainability-", "Populus-tremuloides [trembling-aspen] (Salicaceae-)", "british-columbia", "Salicaceae-: Dicotyledones-", "land-productivity", "organic-matter", "Plantae-", "forest-litter", "productivity-", "forestry-practices", "forestry-", "mineralization-", "forest-soils", "mineral-soils", "removal-", "15. Life on land", "logging-effects", "Terrestrial-Ecology (Ecology-", "0401 agriculture", " forestry", " and fisheries", "Dicots-", "temperature-", "soil-fauna"], "contacts": [{"organization": "Kranabetter, J.M., Chapman, B.K.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.4141/s98-081"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Canadian%20Journal%20of%20Soil%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.4141/s98-081", "name": "item", "description": "10.4141/s98-081", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.4141/s98-081"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1999-11-01T00:00:00Z"}}, {"id": "10.5061/dryad.07hc0m4", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:21:50Z", "type": "Dataset", "title": "Data from: Variation in home-field advantage and ability in leaf litter decomposition across successional gradients", "description": "Open AccessMass loss and  environmental data - Veen et al 2018 - Functional  EcologyData file including  litter mass loss data, soil abiotic properties and litter chemical  properties for Veen et al 2018 (Functional Ecology)Veen et al  FE-data.xlsx", "keywords": ["decomposition", "functional breadth", "Verwerkte data", "Processed data", "15. Life on land", "plant-litter feedback", "soil", "succession"], "contacts": [{"organization": "Veen, G.F. Ciska, Keiser, Ashley D., van der Putten, Wim H., Wardle, David A., Veen, G. F. Ciska,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.07hc0m4"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.07hc0m4", "name": "item", "description": "10.5061/dryad.07hc0m4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.07hc0m4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-01-01T00:00:00Z"}}, {"id": "10.5061/dryad.1g1jwsv29", "type": "Feature", "geometry": null, "properties": {"license": "unspecified", "updated": "2026-04-04T16:21:51Z", "type": "Dataset", "created": "2023-06-26", "title": "Summer litter decomposition is moderated by scale-dependent microenvironmental variation in tundra ecosystems", "description": "unspecifiedTundra soils are one of the world\u2019s largest organic carbon stores, yet  this carbon is vulnerable to accelerated decomposition as climate warming  progresses. The landscape-scale controls of litter decomposition are  poorly understood in tundra ecosystems, which hinders our understanding of  the global carbon cycle. We examined the extent to which the thermal sum  of surface air temperature, soil moisture and permafrost thaw depth  influenced litter mass loss and decomposition rates (k), and at which  spatial thresholds an environmental variable becomes a reliable predictor  of decomposition, using the Tea Bag Index protocol across a heterogeneous  tundra landscape on Qikiqtaruk - Herschel Island, Yukon, Canada. We found  greater green tea litter mass loss and faster decomposition rates (k) in  wetter areas within the landscape, and to a lesser extent in areas with  deeper permafrost active layer thickness and higher surface thermal sums.  We also found higher decomposition rates (k) on north-facing relative to  south-facing aspects at microsites that were wetter rather than warmer.  Spatially heterogeneous belowground conditions (soil moisture and active  layer depth) explained variation in decomposition metrics at local scales  (&lt; 50 m2) better than thermal sum. Surprisingly, there was no  strong control of elevation or slope on litter decomposition. Our results  reveal that there is considerable scale dependency in the environmental  controls of tundra litter decomposition, with moisture playing a greater  role than the thermal sum at &lt; 50 m2 scales. Our findings highlight  the importance and complexity of microenvironmental controls on litter  decomposition in estimates of carbon cycling in a rapidly warming tundra  biome.", "keywords": ["Decomposition", "litter", "13. Climate action", "moisture", "ecosystem change", "tea bag index", "Temperature", "Climate change", "carbon cycling", "15. Life on land", "Tundra", "FOS: Natural sciences", "microclimate"], "contacts": [{"organization": "Gallois, Elise", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.1g1jwsv29"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.1g1jwsv29", "name": "item", "description": "10.5061/dryad.1g1jwsv29", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.1g1jwsv29"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-07-03T00:00:00Z"}}, {"id": "10.5061/dryad.26d32", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:21:51Z", "type": "Dataset", "title": "Data from: A shady business: pine afforestation alters the primary controls on litter decomposition along a precipitation gradient in Patagonia, Argentina", "description": "unspecifiedOur understanding of the principal controls on litter decomposition is  critical for our capacity to predict how global changes will impact  terrestrial ecosystems. Although climate, litter quality and soil  organisms clearly modulate carbon (C) and nutrient turnover, land-use  change affecting plant species composition and structure can alter the  relative importance of such controls. We took advantage of prior land-use  changes of intentional planting of exotic forest species along a broad  precipitation gradient [250\u20132200 mm mean annual precipitation (MAP)] in  Patagonia, South America, where we established five paired sites in  natural vegetation and adjacent 35-year-old pine plantations. We explored  direct and interactive effects of precipitation and plant community  structure on litter decomposition with in situ decomposition, common  litters and reciprocal transplants, in addition to an evaluation of  microenvironmental changes. Surface litter decomposition in natural  vegetation (NV) was similar in all sites along the gradient, independent  of litter quality, MAP or soil characteristics, while mass loss  demonstrated a significant positive linear relationship with MAP in pine  plantations (PP). Decomposition of common litters in PP was markedly  reduced with respect to NV, which was &gt; 50% faster at the arid  extreme of the gradient. C:N ratios predicted decomposition only in PP,  and differences in decomposition were highly correlated with impacts of  vegetative cover on incident solar radiation. Synthesis. Concurrent  changes in plant cover in NV with increasing MAP resulted in reduced  incident solar radiation at the soil surface and decreased the relative  importance of photodegradation as a control on surface mass loss. These  changes eclipsed direct effects of water availability, litter quality and  soil nutrients. In contrast, increased shade and recalcitrant litter with  afforestation in PP sites combined such that photodegradation was entirely  eliminated as a control and biotic decomposition was much reduced. While  afforestation projects are promoted as a strategy to mitigate increased  atmospheric carbon dioxide due to human activity, our results highlight  that primary controls of litter decomposition were substantially altered  with unexpected consequences for the C balance of these ecosystems.", "keywords": ["13. Climate action", "litter quality", "Carbon cycle", "15. Life on land", "photodegradation", "plant-climate interactions", "Lignin", "C:N ratio", "Pinus ponderosa", "organic matter"], "contacts": [{"organization": "Araujo, Patricia I., Austin, Amy T.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.26d32"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.26d32", "name": "item", "description": "10.5061/dryad.26d32", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.26d32"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-06-09T00:00:00Z"}}, {"id": "10.5061/dryad.p83h7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:22:00Z", "type": "Dataset", "title": "Data from: Plant species richness promotes soil carbon and nitrogen stocks in grasslands without legumes", "description": "Open AccessPlant and soil data from  the last year of the biodiversity experimentData from: Wen-feng  Cong, Jasper van Ruijven, Liesje Mommer, Gerlinde De Deyn, Frank Berendse  and Ellis Hoffland. (2014) Plant species richness promotes soil carbon and  nitrogen stocks in grasslands without legumes. Data were collected in the  11-year grassland biodiversity experiment in Wageningen, the Netherlands,  in 2010 and 2011. Abbreviated headlines are as follows: \u201c\u201dBLK\u201d= block;  \u201cPT\u201d= plot; 'SR' = plant species richness; \u201cMI\u201d = monoculture  identity (Ac = Agrostis capillaris; Ao = Anthoxanthum odoratum; Cj =  Centaurea jacea; Fr = Festuca rubra; Hl = Holcus lanatus; Lv =  Leucanthemum vulgare; Pl = Plantago lanceolata; Ra = Rumex acetosa);  'AAB' = average aboveground biomass from 2000 to 2010 (g m-2);  'RB' = standing root biomass (g fresh weight m-2) up to 50 cm  depth in June 2010; 'CS' = soil carbon stocks (g C m-2) in April  2011; 'NS' = soil nitrogen stocks (g N m-2) in April 2011.  'CD' = soil organic carbon decomposition (mg CO2-C kg-1 soil)  measured in soil collected in April 2011; 'NM' = potential net N  mineralization rate (\u00b5g N kg-1 soil day-1) measured in soil collected in  April 2011.data  file.csv", "keywords": ["2. Zero hunger", "Agrostis capillaris", "decomposition", "Festuca rubra", "N mineralization", "15. Life on land", "Rumex acetosa", "carbon sequestration", "root biomass", "Holcus lanatus", "Plantago lanceolata", "ecosystem function", "Leucanthemum vulgare", "14. Life underwater", "plant productivity", "Centaurea jacea", "biodiversity", "Anthoxanthum odoratum"], "contacts": [{"organization": "Cong, Wen-feng, van Ruijven, Jasper, Mommer, Liesje, De Deyn, Gerlinde, Berendse, Frank, Hoffland, Ellis, De Deyn, Gerlinde B.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.p83h7"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.p83h7", "name": "item", "description": "10.5061/dryad.p83h7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.p83h7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-01-01T00:00:00Z"}}, {"id": "10.5061/dryad.pc866t1v2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:22:00Z", "type": "Dataset", "title": "Data for: How do harvesting methods applied in continuous-cover forestry and rotation forest management impact soil carbon storage and degradability in boreal Scots pine forests?", "description": "unspecifiedA detailed method description can be found in the article  published in Forest Ecology and Management and the supplementary  material.", "keywords": ["soil organic carbon", "Decomposition", "microbial biomass", "13. Climate action", "Continuous-cover forestry", "FOS: Agriculture", " forestry", " and fisheries", "15. Life on land", "incubation", "Soil organic matter fractions"]}, "links": [{"href": "https://doi.org/10.5061/dryad.pc866t1v2"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.pc866t1v2", "name": "item", "description": "10.5061/dryad.pc866t1v2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.pc866t1v2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-06-06T00:00:00Z"}}, {"id": "10.5061/dryad.pk5n1p4", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:22:00Z", "type": "Dataset", "title": "Data from: Winter cover crop legacy effects on litter decomposition act through litter quality and microbial community changes", "description": "Open AccessDecomposition rates,  litter traits, and abiotic and biotic soil propertiesData from field  experiment on litter decomposition in crop rotation with cover crops  (2014-2015), including chemical litter traits (C, N, lignin), mass loss en  decomposition rates of winter cover crop litter and standard substrates  (filter paper, bamboo, green tea, rooibos tea). Data presented by  litterbag and by plot. Soil properties include: mineral N, potential N  mineralisation, soil organic matter, soil pH, and also concentrations of  PLFA markers and ergosterol. Daily averages of soil temperature and  moisture present for limited number of plots. Names of cover crops  abbreviated as follows: Lolium perenne (Lope), Trifolium repense (Trre),  Raphanus sativus (Rasa), Vicia sativa (Visa). Main crops: Avena sativa  (Avsa), Cichorium endivia (Cien).Barel-JAPPL-2017-01119.R3  data.xlsx", "keywords": ["2. Zero hunger", "decomposition", "ergosterol", "Lolium perenne", "Vicia sativa", "Verwerkte data", "Raphanus sativus", "Avena sativa", "microbial community composition", "carbon cycling", "Soil pH", "15. Life on land", "mineral nitrogen", "Cichorium endivia", "nitrogen cycling", "crop rotation", "standardised substrates", "13. Climate action", "soil organic matter", "PLFA", "Processed data", "winter cover crop", "Trifolium repens", "legacy effects"], "contacts": [{"organization": "Barel, J.M., Kuijper, T.W.M., Paul, Jos, de Boer, W., Cornelissen, Johannes H.C., de Deyn, G.B.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.pk5n1p4"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.pk5n1p4", "name": "item", "description": "10.5061/dryad.pk5n1p4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.pk5n1p4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-01-01T00:00:00Z"}}, {"id": "10.5194/bg-2-159-2005", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:22:08Z", "type": "Journal Article", "created": "2010-04-29", "description": "<p>Abstract. Extreme sensitivity of soil organic carbon (SOC) to climate and land use change warrants further research in different terrestrial ecosystems. The aim of this study was to investigate the link between aggregate and SOC dynamics in a chronosequence of three different land uses of a south Chilean Andisol: a second growth Nothofagus obliqua forest (SGFOR), a grassland (GRASS) and a Pinus radiata plantation (PINUS). Total carbon content of the 0-10cm soil layer was higher for GRASS (6.7 kg C m-2) than for PINUS (4.3 kg C m-2, while TC content of SGFOR (5.8 kg C m-2) was not significantly different from either one. High extractable oxalate and pyrophosphate Al concentrations (varying from 20.3-24.4 g kg-1, and 3.9-11.1 g kg-1, respectively) were found in all sites. In this study, SOC and aggregate dynamics were studied using size and density fractionation experiments of the SOC, \uffce\uffb413C and total carbon analysis of the different SOC fractions, and C mineralization experiments. The results showed that electrostatic sorption between and among amorphous Al components and clay minerals is mainly responsible for the formation of metal-humus-clay complexes and the stabilization of soil aggregates. The process of ligand exchange between SOC and Al would be of minor importance resulting in the absence of aggregate hierarchy in this soil type. Whole soil C mineralization rate constants were highest for SGFOR and PINUS, followed by GRASS (respectively 0.495, 0.266 and 0.196 g CO2-Cm-2d-1 for the top soil layer). In contrast, incubation experiments of isolated macro organic matter fractions gave opposite results, showing that the recalcitrance of the SOC decreased in another order: PINUS&gt;SGFOR&gt;GRASS. We deduced that electrostatic sorption processes and physical protection of SOC in soil aggregates were the main processes determining SOC stabilization. As a result, high aggregate carbon concentrations, varying from 148 till 48 g kg-1, were encountered for all land use sites. Al availability and electrostatic charges are dependent on pH, resulting in an important influence of soil pH on aggregate stability. Recalcitrance of the SOC did not appear to largely affect SOC stabilization. Statistical correlations between extractable amorphous Al contents, aggregate stability and C mineralization rate constants were encountered, supporting this hypothesis. Land use changes affected SOC dynamics and aggregate stability by modifying soil pH (and thus electrostatic charges and available Al content), root SOC input and management practices (such as ploughing and accompanying drying of the soil).                     </p>", "keywords": ["DECOMPOSITION", "NEW-ZEALAND", "DENSITY FRACTIONS", "[SDU.ASTR] Sciences of the Universe [physics]/Astrophysics [astro-ph]", "HUMIC-ACID", "Life", "QH501-531", "QH540-549.5", "2. Zero hunger", "QE1-996.5", "CULTIVATED SOILS", "Ecology", "[SDU.OCEAN] Sciences of the Universe [physics]/Ocean", " Atmosphere", "Geology", "LAND-USE CHANGE", "04 agricultural and veterinary sciences", "ALUMINUM", "15. Life on land", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "MACROORGANIC MATTER", "C SEQUESTRATION", "[PHYS.ASTR.CO] Physics [physics]/Astrophysics [astro-ph]/Cosmology and Extra-Galactic Astrophysics [astro-ph.CO]", "Earth and Environmental Sciences", "FOREST SOILS", "[SDU.STU] Sciences of the Universe [physics]/Earth Sciences", "0401 agriculture", " forestry", " and fisheries"], "contacts": [{"organization": "Huygens, D., Boeckx, P., van Cleemput, O., Oyarz\u00fan, C., Godoy, R.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5194/bg-2-159-2005"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biogeosciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.5194/bg-2-159-2005", "name": "item", "description": "10.5194/bg-2-159-2005", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5194/bg-2-159-2005"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-06-24T00:00:00Z"}}, {"id": "10.5194/egusphere-egu21-5218", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:22:13Z", "type": "Journal Article", "created": "2021-03-04", "title": "Microbial inputs at the litter layer translate climate into altered organic matter properties", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>&amp;lt;p&amp;gt;Plant litter chemistry is altered during decomposition but it remains unknown if these alterations, and thus the composition of residual litter, will change in response to climate. Selective microbial mineralization of litter components and the accumulation of microbial necromass can drive litter compositional change, but the extent to which these mechanisms respond to climate remains poorly understood. We addressed this knowledge gap by studying needle litter decomposition along a boreal forest climate transect. Specifically, we investigated how the composition and/or metabolism of the decomposer community varies with climate, and if that variation is associated with distinct modifications of litter chemistry during decomposition. We analyzed the composition of microbial phospholipid fatty acids (PLFAs) in the litter layer and measured natural abundance &amp;amp;#948;&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C&amp;lt;sub&amp;gt;PLFA&amp;lt;/sub&amp;gt; values as an integrated measure of microbial metabolisms. Changes in litter chemistry and &amp;amp;#948;&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C values were measured in litterbag experiments conducted at each transect site. A warmer climate was associated with higher litter nitrogen concentrations as well as altered microbial community structure (lower fungi:bacteria ratios) and microbial metabolism (higher &amp;amp;#948;&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C&amp;lt;sub&amp;gt;PLFA&amp;lt;/sub&amp;gt;). Litter in warmer transect regions accumulated less aliphatic&amp;amp;#8208;C (lipids, waxes) and retained more O&amp;amp;#8208;alkyl&amp;amp;#8208;C (carbohydrates), consistent with enhanced &amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C&amp;amp;#8208;enrichment in residual litter, than in colder regions. These results suggest that chemical changes during litter decomposition will change with climate, driven primarily by indirect climate effects (e.g., greater nitrogen availability and decreased fungi:bacteria ratios) rather than direct temperature effects. A positive correlation between microbial biomass &amp;amp;#948;&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C values and &amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C&amp;amp;#8208;enrichment during decomposition suggests that change in litter chemistry is driven more by distinct microbial necromass inputs than differences in the selective removal of litter components. Our study highlights the role that microbial inputs during early litter decomposition can play in shaping surface litter contribution to soil organic matter as it responds to climate warming effects such as greater nitrogen availability.&amp;lt;/p&amp;gt;</p></article>", "keywords": ["DECOMPOSITION", "C-13", "CP&#8208", "necromass", "litter decomposition", "COMMUNITY COMPOSITION", "Soil", "CARBON SEQUESTRATION", "Taiga", "boreal forest", "bacteria", "C-13 NMR", "TEMPERATURE", "Biochemistry", " cell and molecular biology", "Soil Microbiology", "FUNGAL", "2. Zero hunger", "MAS C-13&#8208", "Fungi", "04 agricultural and veterinary sciences", "15. Life on land", "NMR", "6. Clean water", "climate transect", "Plant Leaves", "13. Climate action", "FOREST SOILS", "PLFA", "0401 agriculture", " forestry", " and fisheries", "fungi", "FATTY-ACIDS", "BULK CARBON", "LIGNIN"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.15420"}, {"href": "https://doi.org/10.5194/egusphere-egu21-5218"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.5194/egusphere-egu21-5218", "name": "item", "description": "10.5194/egusphere-egu21-5218", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5194/egusphere-egu21-5218"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-16T00:00:00Z"}}, {"id": "10138/335756", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:25:02Z", "type": "Journal Article", "created": "2021-03-04", "title": "Microbial inputs at the litter layer translate climate into altered organic matter properties", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>&amp;lt;p&amp;gt;Plant litter chemistry is altered during decomposition but it remains unknown if these alterations, and thus the composition of residual litter, will change in response to climate. Selective microbial mineralization of litter components and the accumulation of microbial necromass can drive litter compositional change, but the extent to which these mechanisms respond to climate remains poorly understood. We addressed this knowledge gap by studying needle litter decomposition along a boreal forest climate transect. Specifically, we investigated how the composition and/or metabolism of the decomposer community varies with climate, and if that variation is associated with distinct modifications of litter chemistry during decomposition. We analyzed the composition of microbial phospholipid fatty acids (PLFAs) in the litter layer and measured natural abundance &amp;amp;#948;&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C&amp;lt;sub&amp;gt;PLFA&amp;lt;/sub&amp;gt; values as an integrated measure of microbial metabolisms. Changes in litter chemistry and &amp;amp;#948;&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C values were measured in litterbag experiments conducted at each transect site. A warmer climate was associated with higher litter nitrogen concentrations as well as altered microbial community structure (lower fungi:bacteria ratios) and microbial metabolism (higher &amp;amp;#948;&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C&amp;lt;sub&amp;gt;PLFA&amp;lt;/sub&amp;gt;). Litter in warmer transect regions accumulated less aliphatic&amp;amp;#8208;C (lipids, waxes) and retained more O&amp;amp;#8208;alkyl&amp;amp;#8208;C (carbohydrates), consistent with enhanced &amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C&amp;amp;#8208;enrichment in residual litter, than in colder regions. These results suggest that chemical changes during litter decomposition will change with climate, driven primarily by indirect climate effects (e.g., greater nitrogen availability and decreased fungi:bacteria ratios) rather than direct temperature effects. A positive correlation between microbial biomass &amp;amp;#948;&amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C values and &amp;lt;sup&amp;gt;13&amp;lt;/sup&amp;gt;C&amp;amp;#8208;enrichment during decomposition suggests that change in litter chemistry is driven more by distinct microbial necromass inputs than differences in the selective removal of litter components. Our study highlights the role that microbial inputs during early litter decomposition can play in shaping surface litter contribution to soil organic matter as it responds to climate warming effects such as greater nitrogen availability.&amp;lt;/p&amp;gt;</p></article>", "keywords": ["DECOMPOSITION", "C-13", "CP&#8208", "necromass", "litter decomposition", "COMMUNITY COMPOSITION", "Soil", "CARBON SEQUESTRATION", "Taiga", "boreal forest", "bacteria", "C-13 NMR", "TEMPERATURE", "Biochemistry", " cell and molecular biology", "Soil Microbiology", "FUNGAL", "2. Zero hunger", "MAS C-13&#8208", "Fungi", "04 agricultural and veterinary sciences", "15. Life on land", "NMR", "6. Clean water", "climate transect", "Plant Leaves", "13. Climate action", "FOREST SOILS", "PLFA", "0401 agriculture", " forestry", " and fisheries", "fungi", "FATTY-ACIDS", "BULK CARBON", "LIGNIN"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.15420"}, {"href": "https://doi.org/10138/335756"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10138/335756", "name": "item", "description": "10138/335756", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10138/335756"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-16T00:00:00Z"}}, {"id": "10.5281/zenodo.14917034", "type": "Feature", "geometry": null, "properties": {"license": "unspecified", "updated": "2026-04-04T16:23:14Z", "type": "Dataset", "title": "Peatland Decomposition Database (1.1.0)", "description": "1 Introduction  The Peatland Decomposition Database (PDD) stores data from published litterbag experiments related to peatlands. Currently, the database focuses on northern peatlands and Sphagnum litter and peat, but it also contains data from some vascular plant litterbag experiments. Currently, the database contains entries from 34 studies, 2,160 litterbag experiments, and 7,297 individual samples with 117,841 measurements for various attributes (e.g.\u00a0relative mass remaining, N content, holocellulose content, mesh size). The aim is to provide a harmonized data source that can be useful to re-analyse existing data and to plan future litterbag experiments.  The Peatland Productivity and Decomposition Parameter Database (PPDPD) (Bona et al. 2018) is similar to the Peatland Decomposition Database (PDD) in that both contain data from peatland litterbag experiments. The differences are that both databases partly contain different data, that PPDPD additionally contains information on vegetation productivity, which PDD does not, and that PDD provides more information and metadata on litterbag experiments, and also measurement errors.     2 Updates  Compared to version 1.0.0, this version has a new structure for table experimental_design_format, contains additional metadata on the experimental design (these were omitted in version 1.0.0), and contains the scripts that were used to import the data into the database.     3 Methods    3.1 Data collection  Data for the database was collected from published litterbag studies, by extracting published data from figures, tables, or other data sources, and by contacting the authors of the studies to obtain raw data. All data processing was done with R (R version 4.2.0 (2022-04-22)) (R Core Team 2022).  Studies were identified via a Scopus search with search string (TITLE-ABS-KEY ( peat* AND ( 'litter bag' OR 'decomposition rate' OR 'decay rate' OR 'mass loss')) AND NOT ('tropic*')) (2022-12-17). These studies were further screened to exclude those which do not contain litterbag data or which recycle data from other studies that have already been considered. Additional studies with litterbag experiments in northern peatlands we were aware of, but which were not identified in the literature search were added to the list of publications. For studies not older than 10 years, authors were contacted to obtain raw data, however this was successful only in few cases. To date, the database focuses on Sphagnum litterbag experiments and not from all studies that were identified by the literature search data have been included yet in the database.  Data from figures were extracted using the package \u2018metaDigitise\u2019 (1.0.1) (Pick, Nakagawa, and Noble 2018). Data from tables were extracted manually.  Data from the following studies are currently included: Farrish and Grigal (1985), Bartsch and Moore (1985), Farrish and Grigal (1988), Vitt (1990), Hogg, Lieffers, and Wein (1992), Sanger, Billett, and Cresser (1994), Hiroki and Watanabe (1996), Szumigalski and Bayley (1996), Prevost, Belleau, and Plamondon (1997), Arp, Cooper, and Stednick (1999), Robbert A. Scheffer and Aerts (2000), R. A. Scheffer, Van Logtestijn, and Verhoeven (2001), Limpens and Berendse (2003), Waddington, Rochefort, and Campeau (2003), Asada, Warner, and Banner (2004), Thormann, Bayley, and Currah (2001), Trinder, Johnson, and Artz (2008), Breeuwer et al. (2008), Trinder, Johnson, and Artz (2009), Bragazza and Iacumin (2009), Hoorens, Stroetenga, and Aerts (2010), Strakov\u00e1 et al. (2010), Strakov\u00e1 et al. (2012), Orwin and Ostle (2012), Lieffers (1988), Manninen et al. (2016), Johnson and Damman (1991), Bengtsson, Rydin, and H\u00e1jek (2018a), Bengtsson, Rydin, and H\u00e1jek (2018b), Asada and Warner (2005), Bengtsson, Granath, and Rydin (2017), Bengtsson, Granath, and Rydin (2016), Hagemann and Moroni (2015), Hagemann and Moroni (2016), B. Piatkowski et al. (2021), B. T. Piatkowski et al. (2021), M\u00e4kil\u00e4 et al. (2018), Golovatskaya and Nikonova (2017), Golovatskaya and Nikonova (2017).      4 Database records  The database is a \u2018MariaDB\u2019 database and the database schema was designed to store data and metadata following the Ecological Metadata Language (EML) (Jones et al. 2019). Descriptions of the tables are shown in Tab. 1.  The database contains general metadata relevant for litterbag experiments (e.g., geographical, temporal, and taxonomic coverage, mesh sizes, experimental design). However, it does not contain a detailed description of sample handling, sample preprocessing methods, site descriptions, because there currently are no discipline-specific metadata and reporting standards. Table 1: Description of the individual tables in the database.     Name Description     attributes Defines the attributes of the database and the values in column attribute_name in table data.   citations Stores bibtex entries for references and data sources.   citations_to_datasets Links entries in table citations with entries in table datasets.   custom_units Stores custom units.   data Stores measured values for samples, for example remaining masses.   datasets Lists the individual datasets.   experimental_design_format Stores information on the experimental design of litterbag experiments.   measurement_scales, measurement_scales_date_time, measurement_scales_interval, measurement_scales_nominal, measurement_scales_ordinal, measurement_scales_ratio Defines data value types.   missing_value_codes Defines how missing values are encoded.   samples Stores information on individual samples.   samples_to_samples Links samples to other samples, for example litter samples collected in the field to litter samples collected during the incubation of the litterbags.   units, unit_types Stores information on measurement units.        5 Attributes Table 2: Definition of attributes in the Peatland Decomposition Database and entries in the column attribute_name in table data.     Name Definition Example value Unit Measurement scale Number type Minimum value Maximum value String format     4_hydroxyacetophenone_mass_absolute A numeric value representing the content of 4-hydroxyacetophenone, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   4_hydroxyacetophenone_mass_relative_mass A numeric value representing the content of 4-hydroxyacetophenone, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   4_hydroxybenzaldehyde_mass_absolute A numeric value representing the content of 4-hydroxybenzaldehyde, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   4_hydroxybenzaldehyde_mass_relative_mass A numeric value representing the content of 4-hydroxybenzaldehyde, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   4_hydroxybenzoic_acid_mass_absolute A numeric value representing the content of 4-hydroxybenzoic acid, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   4_hydroxybenzoic_acid_mass_relative_mass A numeric value representing the content of 4-hydroxybenzoic acid, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   abbreviation In table custom_units: A string representing an abbreviation for the custom unit. gC NA nominal NA NA NA NA   acetone_extractives_mass_absolute A numeric value representing the content of acetone extractives, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   acetone_extractives_mass_relative_mass A numeric value representing the content of acetone extractives, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   acetosyringone_mass_absolute A numeric value representing the content of acetosyringone, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   acetosyringone_mass_relative_mass A numeric value representing the content of acetosyringone, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   acetovanillone_mass_absolute A numeric value representing the content of acetovanillone, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   acetovanillone_mass_relative_mass A numeric value representing the content of acetovanillone, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   arabinose_mass_absolute A numeric value representing the content of arabinose, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   arabinose_mass_relative_mass A numeric value representing the content of arabinose, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   ash_mass_absolute A numeric value representing the content of ash (after burning at 550\u00b0C). 4 g ratio real 0 Inf NA   ash_mass_relative_mass A numeric value representing the content of ash (after burning at 550\u00b0C). 0.05 g/g ratio real 0 Inf NA   attribute_definition A free text field with a textual description of the meaning of attributes in the dpeatdecomposition database. NA NA nominal NA NA NA NA   attribute_name A string describing the names of the attributes in all tables of the dpeatdecomposition database. attribute_name NA nominal NA NA NA NA   bibtex A string representing the bibtex code used for a literature reference throughout the dpeatdecomposition database. Galka.2021 NA nominal NA NA NA NA   bounds_maximum A numeric value representing the minimum possible value for a numeric attribute. 0 NA interval real Inf Inf NA   bounds_minimum A numeric value representing the maximum possible value for a numeric attribute. INF NA interval real Inf Inf NA   bulk_density A numeric value representing the bulk density of the sample [g cm-3]. 0,2 g/cm^3 ratio real 0 Inf NA   C_absolute The absolute mass of C in the sample. 1 g ratio real 0 Inf NA   C_relative_mass The absolute mass of C in the sample. 1 g/g ratio real 0 Inf NA   C_to_N A numeric value representing the C to N ratio of the sample. 35 g/g ratio real 0 Inf NA   C_to_P A numeric value representing the C to P ratio of the sample. 35 g/g ratio real 0 Inf NA   Ca_absolute The absolute mass of Ca in the sample. 1 g ratio real 0 Inf NA   Ca_relative_mass The absolute mass of Ca in the sample. 1 g/g ratio real 0 Inf NA   cation_exchange_capacity_absolute A numeric value representing the cation exchange capacity. 10 mol ratio real 0 Inf NA   cation_exchange_capacity_relative_mass A numeric value representing the cation exchange capacity relative to sample mass. 200 mol/g ratio real 0 Inf NA   cellulose_mass_absolute A numeric value representing the content of cellulose, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   cellulose_mass_relative_mass A numeric value representing the content of cellulose, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   comments_measurement A string representing comments on a measurement. NA NA nominal NA NA NA NA   comments_samples A free text field where you can enter all information related to the sample that is not covered by the remaining fields. For example you could provide information on potential contamination sources, issues with specific parameters, additional information to the sampling site, e.g.\u00a0present vegetation, past vegetation, specific conditions during sampling, \u2026 . \u2026 NA nominal NA NA NA NA   description A free text field. In table \u201ccustom_units\u201d: A description of a custom unit. NA NA nominal NA NA NA NA   dichloromethane_extractives_mass_absolute A numeric value representing the content of dichlromethane extractives, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   dichloromethane_extractives_mass_relative_mass A numeric value representing the content of dichlromethane extractives, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   dimension A string representing the dimension of the unit. L NA nominal NA NA NA NA   error A numeric value representing the error of the measured value. The unit of the error is defined by the corresponding attribute_name. 1.2 NA ratio real 0 Inf NA   error_type A character representing the type of the error of a measured value (e.g., sd, 95% interval, etc.). sd NA nominal NA NA NA NA   ethanol_extractives_mass_absolute A numeric value representing the content of ethanol extractives, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   ethanol_extractives_mass_relative_mass A numeric value representing the content of ethanol extractives, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   experimental_design A character of the format \u2018x_y_z_\u2026\u2019, where x, y, z, \u2026, are integers differentiating hierarchical groups of an experimental design. These groups are explained in table experimental_design_format \u2026 NA nominal NA NA NA NA   experimental_design_description A string describing the variables in the csv file identified by column file in table experimental_design_format for each dataset. \u2026 NA nominal NA NA NA NA   explanation In table missing_value_codes: A string explaining what the corresponding missing value code means. \u2026 NA nominal NA NA NA NA   Fe_absolute The absolute mass of Fe in the sample. 1 g ratio real 0 Inf NA   Fe_relative_mass The absolute mass of Fe in the sample. 1 g/g ratio real 0 Inf NA   ferulic_acid_mass_absolute A numeric value representing the content of ferulic acid, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   ferulic_acid_mass_relative_mass A numeric value representing the content of ferulic acid, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   file A string representing a path to a file. For table experimental_design_format: Path to a csv file providing details on the experimental design and manipulations. NA NA nominal NA NA NA NA   format_string A string defining the format of a nominal variable. YYYY-MM-DD NA nominal NA NA NA NA   galactose_mass_absolute A numeric value representing the content of galactose, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   galactose_mass_relative_mass A numeric value representing the content of galactose, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   galacturonic_acid_mass_absolute A numeric value representing the content of galacturonic acid, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   galacturonic_acid_mass_relative_mass A numeric value representing the content of galacturonic acid, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   glucose_mass_absolute A numeric value representing the content of glucose, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   glucose_mass_relative_mass A numeric value representing the content of glucose, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   glucuronic_acid_mass_absolute A numeric value representing the content of glucuronic acid, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   glucuronic_acid_mass_relative_mass A numeric value representing the content of glucuronic acid, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   ground_slope The slope of the sample (land surface) as fraction of the vertical distance covered and the horizontal distance. 0.2 cm/cm ratio real 0 Inf NA   holocellulose_mass_absolute A numeric value representing the absolute holocellulose mass in the sample. 0.45 g ratio real 0 Inf NA   holocellulose_mass_relative_mass A numeric value representing the holocellulose content of the sample [g/g]. 0.45 g/g ratio real 0 1 NA   id_citation An integer value representing an id for each entry in the table \u201ccitations\u201c in the dpeatdecomposition database. 1 NA interval natural 1 Inf NA   id_dataset A numeric id for the dataset (starting with 1 and increasing by 1; for one data contribution, this should be 1 for all samples and the appropriate id is assigned when the data are merged into the database). 1 NA interval natural 1 Inf NA   id_measurement A numeric id for measurements (starting with 1 and increasing by 1). This means that each measurement gets its own rows and measurements for different attributes are considered independent, i.e.\u00a0multiple measurement ids for the same sample just count replicate measurements for any attribute. For attributes with less measurements than for a different attribute, just fill measurements starting from smaller id_measurement and leave the cells in the remaining rows empty. 1 NA interval natural 1 Inf NA   id_measurement_denominator An integer value representing the identifier for the measurement which is used as denominator in computing a relative quantity (e.g.\u00a0the absolute mass of the initial sample when computing the mass fraction relative to the initial sample). 1 NA interval natural 1 Inf NA   id_measurement_numerator An integer value representing the identifier for the measurement which is used as numerator in computing a relative quantity (e.g.\u00a0the absolute mass of the sample when computing the mass fraction relative to the initial sample). 1 NA interval natural 1 Inf NA   id_measurement_scale An integer value representing an id for each entry in the table \u201cmeasurement_scales\u201c in the dpeatdecomposition database. 1 NA interval natural 1 Inf NA   id_missing_value_code An integer value representing an id for each entry in the table \u201cmissing_value_codes\u201c in the dpeatdecomposition database. 1 NA interval natural 1 Inf NA   id_sample A numeric id for the sample (starting with 1 and increasing by 1). 1 NA interval natural 1 Inf NA   id_sample_child An integer representing an identifier for the child (resulting) sample of the transition (some change to a sample). 1 NA interval natural 1 Inf NA   id_sample_incubation_start An integer representing an identifier for the sample which is the sample at the start of the incubation (incubation_duration == 0). 1 NA interval natural 1 Inf NA   id_sample_origin An integer representing an identifier for the sample which is the original sample in a line of transitions of a sample (modifications of a sample). 1 NA interval natural 1 Inf NA   id_sample_parent An integer representing an identifier for the parent (initial) sample of the transition (some change to a sample). 1 NA interval natural 1 Inf NA   id_unit An integer value representing an id for each entry in the table \u201cunits\u201c in the dpeatdecomposition database. 1 NA interval natural 1 Inf NA   incubation_duration A numeric value representing the number of days over which a sample was incubated. 45 d ratio real 0 Inf NA   incubation_environment A character defining the environment in which a litterbag sample was incubated (e.g.\u00a0\u2018peat\u2019, \u2018container\u2019, \u2026). peat NA nominal NA NA NA NA   is_incubated A logical value indicating whether a sample was collected during the decomposition incubation of a litterbag experiment or not. TRUE NA nominal NA NA NA NA   K_absolute The absolute mass of K in the sample. 1 g ratio real 0 Inf NA   K_relative_mass The absolute mass of K in the sample. 1 g/g ratio real 0 Inf NA   Klason_lignin_mass_absolute A numeric value representing the absolute Klason lignin mass in the sample. 0.26 g ratio real 0 Inf NA   Klason_lignin_mass_relative_mass A numeric value representing the Klason lignin content of the sample [g/g]. 0.26 g/g ratio real 0 1 NA   mannose_mass_absolute A numeric value representing the content of mannose, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   mannose_mass_relative_mass A numeric value representing the content of mannose, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   mass_absolute The mass of the sample. 1200 mg ratio real 0 Inf NA   mass_relative_mass The mass of the sample divided by the mass of a sample (e.g.\u00a0the sample before decomposition). 0.87 g/g ratio real 0 Inf NA   measurement_scale A string representing the measurement scale for a value. nominal NA nominal NA NA NA NA   mesh_size_absolute The width of the mesh the litterbags are made of. 0.2 um ratio real 0 Inf NA   Mg_absolute The absolute mass of Mg in the sample. 1 g ratio real 0 Inf NA   Mg_relative_mass The absolute mass of Mg in the sample. 1 g/g ratio real 0 Inf NA   Mn_absolute The absolute mass of Mn in the sample. 1 g ratio real 0 Inf NA   Mn_relative_mass The absolute mass of Mn in the sample. 1 g/g ratio real 0 Inf NA   multiplier_to_si A numeric value representing the value with which a given value with a certain measurement unit has to be multiplied in order to convert it to a related SI unit. 100 dimensionless interval real Inf Inf NA   N_absolute The absolute mass of nitrogen in the sample. 1.2 mg ratio real 0 Inf NA   N_relative_mass The mass of the nitrogen in the sample divided by the mass of a sample (e.g.\u00a0the sample before decomposition). 0.013 g/g ratio real 0 Inf NA   number_type A string representing the number type of a numeric variable. NA NA nominal NA NA NA NA   P_absolute The absolute mass of P in the sample. 1 g ratio real 0 Inf NA   p_coumaric_acid_mass_absolute A numeric value representing the content of p-coumaric acid, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   p_coumaric_acid_mass_relative_mass A numeric value representing the content of p-coumaric acid, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   P_relative_mass The absolute mass of P in the sample. 1 g/g ratio real 0 Inf NA   parent_si A string representing the SI unit from which a certain derived unit is derived. m NA nominal NA NA NA NA   pH A numeric value representing the pH value of the sample. 5,4 dimensionless interval real Inf Inf NA   phenolics_PHBA_equivalents_mass_absolute A numeric value representing the mass content of phenolics (p-hydroxy benzoic acid equivalent). 10 g ratio real 0 Inf NA   phenolics_PHBA_equivalents_mass_relative_mass A numeric value representing the mass content of phenolics (p-hydroxy benzoic acid equivalent). 0.04 g/g ratio real 0 1 NA   phenolics_tannic_acid_equivalents_mass_absolute A numeric value representing the mass content of phenolics (tannic acid equivalent). 10 g ratio real 0 Inf NA   phenolics_tannic_acid_equivalents_mass_relative_mass A numeric value representing the mass content of phenolics (tannic acid equivalent). 0.04 g/g ratio real 0 1 NA   power An integer value. The power to which the dimension is raised. 2 dimensionless interval integer Inf Inf NA   rhamnose_mass_absolute A numeric value representing the content of rhamnose, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   rhamnose_mass_relative_mass A numeric value representing the content of rhamnose, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   root_diameter_absolute The diameter of roots in the sample. 2 mm ratio real 0 Inf NA   S_absolute The absolute mass of S in the sample. 1 g ratio real 0 Inf NA   S_relative_mass The absolute mass of S in the sample. 1 g/g ratio real 0 Inf NA   sample_depth_lower A numeric value representing the depth of the lower boundary of a sample relative to the land surface (e.g.\u00a0peat surface) [cm]. 15 cm interval real Inf Inf NA   sample_depth_upper A numeric value representing the depth of the upper boundary of a sample relative to the land surface (e.g.\u00a0peat surface) [cm]. 12 cm interval real Inf Inf NA   sample_label A string representing a label for each sample. S1 NA nominal NA NA NA NA   sample_microhabitat A string describing the microhabitat where the sample was collected. For peat, this should be one of \u2018hummock\u2019, \u2018hollow\u2019, \u2018lawn\u2019, \u2018pond\u2019. In other cases, a custom value can be used. hummock NA nominal NA NA NA NA   sample_size An integer representing the number of individual measurements which were used to compute the value in column value. 1 NA interval natural 1 Inf NA   sample_treatment A string with an description of an experimental tratment if this was applied. By default, this should be \u2018control\u2019, indicating that there was no manipulation. If there was any experimental manipulation, this can be abbreviated by a label (e.g.\u00a0by a treatment level) that is defined in the textual description of the project (in the file \u2018description.docx\u2019). control NA nominal NA NA NA NA   sample_type A string describing the type of the sample. Must be one of \u2018peat\u2019, \u2018dom\u2019, \u2018vegetation\u2019, \u2018litter\u2019. peat NA nominal NA NA NA NA   sample_type2 A string describing the type of the sample. Here you can provide individual (own) categories which may provide more details than the column sample_type. shoots NA nominal NA NA NA NA   sample_wet_mass_absolute A numeric value representing the mass of the wet sample [g]. 5.6 g ratio real 0 Inf NA   sampling_altitude A numeric value representing the altitude of the exact sampling position [m above sea level]. 543 m ratio real Inf Inf NA   sampling_day An integer representing the day in which a sample was collected. 1 NA interval natural 1 31 NA   sampling_latitude A numeric value representing the latitude coordinates of the exact sampling position (in the EPSG:3857 projection coordinate system \u2014 this is the system used by Google and is based on the WGS 84 reference system) [\u00b0N]. 40447 NA interval real -180 180 NA   sampling_longitude A numeric value representing the longitude coordinates of the exact sampling position (in the EPSG:3857 projection coordinate system \u2014 this is the system used by Google and is based on the WGS 84 reference system) [\u00b0W]. 79983 NA interval real -180 180 NA   sampling_month An integer representing the month in which a sample was collected. 1 NA interval natural 1 12 NA   sampling_year An integer representing the year in which a sample was collected. 1 NA interval natural 1 Inf NA   site_name A character representing the name of the site where the sample was collected. Mer Bleue NA nominal NA NA NA NA   soluble_Klason_lignin_mass_absolute A numeric value representing the mass content of soluble Klason lignin (following Ehrman 1996). 10 g ratio real 0 Inf NA   soluble_Klason_lignin_mass_relative_mass A numeric value representing the mass content of soluble Klason lignin (following Ehrman 1996). 0.04 g/g ratio real 0 1 NA   soluble_lignin_mass_absolute A numeric value representing the content of soluble lignin, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   soluble_lignin_mass_relative_mass A numeric value representing the content of soluble lignin, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   sphagnan_mass_absolute A numeric value representing the mass content of sphagnan (Ballance et al., 2007). 10 g ratio real 0 Inf NA   sphagnan_mass_relative_mass A numeric value representing the mass content of sphagnan (Ballance et al., 2007). 0.04 g/g ratio real 0 1 NA   standard_unit A logical value indicating if the unit is a standard unit of the Ecological Metadata Language or not. TRUE NA nominal NA NA NA NA   syringe_aldehyde_mass_absolute A numeric value representing the content of syringe aldehyde, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   syringe_aldehyde_mass_relative_mass A numeric value representing the content of syringe aldehyde, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   syringic_acid_mass_absolute A numeric value representing the content of syringic acid, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   syringic_acid_mass_relative_mass A numeric value representing the content of syringic acid, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   taxon_organ A string describing the organ of a taxon the sample represents (if the sample represents a taxon). For example, if the sample is Carex lasiocarpa, this could be \u2018shoot\u2019, or \u2018root\u2019, or \u2018leaves\u2019. root NA nominal NA NA NA NA   taxon_rank_name A string describing the taxon rank the value in column taxon_rank_value represents (if the sample can be assigned to a specific taxon). For exampe, if the value in column taxon_rank_value is a species name, then you should enter \u2018species\u2019 here, or if the value in column taxon_rank_value is a genus name, then you should enter \u2018genus\u2019 here. species NA nominal NA NA NA NA   taxon_rank_value A string describing the taxon rank value of the sample (if the sample can be assigned to a taxon). For example, if the sample is a distinct species, enter the scientific species name here, or if the sample can be assigned to a genus, enter the scientific genus name here. Sphagnum magellanicum NA nominal NA NA NA NA   temperature A numeric value representing the temperature of the sample [K]. 293.4 K ratio real 0 Inf NA   text_domain_definition A string representing the text domain for a string. NA NA nominal NA NA NA NA   transition_description A string representing a description of what happened to a parent sample during its transition to the child sample. transplantation NA nominal NA NA NA NA   udunits_unit A string representing a measurement unit in the udunits format. m NA nominal NA NA NA NA   unit_type A string representing the type of a unit. length NA nominal NA NA NA NA   value A numeric value representing the measured value. The unit of the value is defined by the corresponding attribute_name. 1.2 NA ratio real 0 Inf NA   value_type A character representing the type of the measured value. One of \u2018point\u2019 (for a single measurement without uncertainty), or \u2018mean\u2019 (average of multiple measurements). point NA nominal NA NA NA NA   vanillic_acid_mass_absolute A numeric value representing the content of vanillic acid, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   vanillic_acid_mass_relative_mass A numeric value representing the content of vanillic acid, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   vanillin_mass_absolute A numeric value representing the content of vanillin, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   vanillin_mass_relative_mass A numeric value representing the content of vanillin, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   volume A numeric value representing the volume of the sample [cm3]. 20 cm^3 ratio real 0 Inf NA   water_extractives_mass_absolute A numeric value representing the content of water extractives, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   water_extractives_mass_relative_mass A numeric value representing the content of water extractives, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA   water_mass_absolute A numeric value representing the water mass content of the sample as mass of water divided by the mass of the wet sample [g] 5.6 g ratio real 0 Inf NA   water_mass_relative_mass A numeric value representing the water mass content of the sample as mass of water divided by the mass of the wet sample [g/g] 2.4 g/g ratio real 0 1 NA   water_mass_relative_volume A numeric value representing the water mass content of the sample as mass of water divided by the volume of the wet sample [g cm-3]. 0.6 g/cm^3 ratio real 0 1 NA   water_table_depth A numeric value representing the depth to the water table level relative to the position of the sample. 23.4 cm ratio real -Inf Inf NA   xylose_mass_absolute A numeric value representing the content of xylose, as described in Strakov\u00e1 et al. (2010). 0.26 g ratio real 0 Inf NA   xylose_mass_relative_mass A numeric value representing the content of xylose, as described in Strakov\u00e1 et al. (2010). 0.26 g/g ratio real 0 1 NA        6 Usage notes    6.1 Download  The Peatland Decomposition Database can be downloaded from https://doi.org/10.5281/zenodo.11276065. There you can also download a folder \u201cderived_data\u201d that contains csv files with the experimental design for each study (see attribute file in Tab. 2), and a folder \u201cscripts\u201d with the R Markdown scripts used to import the data into the database.     6.2 Set up  The downloaded database needs to be imported in a running MariaDB instance. In a linux terminal, the downloaded sql file can be imported like so:  mysql -u<user> -p dpeatdecomposition < dpeatdecomposition-backup-2025-02-24.sql  Here, <user> is the database user name.     6.3 R interface  The R package \u2018dpeatdecomposition\u2019 (Teickner and Knorr 2024) provides an R interface to the database, based on the packages \u2018RMariaDB\u2019 (M\u00fcller et al. 2021), and \u2018dm\u2019 (Schieferdecker, M\u00fcller, and Bergant 2022).      7 Citation  If you use data from the Peat Decomposition Database, cite the database and each of the original data sources you use. Bibliographic information on each data source are stored in table citations and linked to datasets via table citations_to_datasets.  The database can be cited as: Teickner, Henning and Klaus-Holger Knorr. 2024. \u201cThe Peatland Decomposition Database.\u201d Zenodo. https://doi.org/10.5281/zenodo.11276065.  Bibtex entries for each dataset can also be obtained using the \u2018dpeatdecomposition\u2019 package:  # connect to database con <-   RMariaDB::dbConnect(     drv = RMariaDB::MariaDB(),     dbname = 'dpeatdecomposition',     default.file = '~/my.cnf'   )  # get database as dm object dm_dpeatdecomposition <-   dpeatdecomposition::dp_get_dm(con, learn_keys = TRUE)  # extract bibtex entries dm_dpeatdecomposition |>   dm::dm_zoom_to(datasets) |>   dm::left_join(citations_to_datasets, by = 'id_dataset') |>   dm::left_join(citations, by = 'id_citation') |>   dm::pull_tbl() |>   as.data.frame()  # disconnect RMariaDB::dbDisconnect(con)  A full list of references for the individual datasets is provided in Tab. 3. Table 3: Sources for each dataset in the Peatland Decomposition Database.     id_dataset Source     1 Farrish and Grigal (1985)   2 Bartsch and Moore (1985)   3 Farrish and Grigal (1988)   4 Vitt (1990)   5 Hogg, Lieffers, and Wein (1992)   6 Sanger, Billett, and Cresser (1994)   7 Hiroki and Watanabe (1996)   8 Szumigalski and Bayley (1996)   9 Prevost, Belleau, and Plamondon (1997)   10 Arp, Cooper, and Stednick (1999)   11 Robbert A. Scheffer and Aerts (2000)   12 R. A. Scheffer, Van Logtestijn, and Verhoeven (2001)   13 Limpens and Berendse (2003)   14 Waddington, Rochefort, and Campeau (2003)   15 Asada, Warner, and Banner (2004)   16 Thormann, Bayley, and Currah (2001)   17 Trinder, Johnson, and Artz (2008)   18 Breeuwer et al. (2008)   19 Trinder, Johnson, and Artz (2009)   20 Bragazza and Iacumin (2009)   21 Hoorens, Stroetenga, and Aerts (2010)   22 Strakov\u00e1 et al. (2010)   22 Strakov\u00e1 et al. (2012)   23 Orwin and Ostle (2012)   24 Lieffers (1988)   25 Manninen et al. (2016)   26 Johnson and Damman (1991)   27 Bengtsson, Rydin, and H\u00e1jek (2018a)   27 Bengtsson, Rydin, and H\u00e1jek (2018b)   28 Asada and Warner (2005)   29 Bengtsson, Granath, and Rydin (2017)   29 Bengtsson, Granath, and Rydin (2016)   30 Hagemann and Moroni (2015)   30 Hagemann and Moroni (2016)   31 B. Piatkowski et al. (2021)   31 B. T. Piatkowski et al. (2021)   32 M\u00e4kil\u00e4 et al. (2018)   33 Golovatskaya and Nikonova (2017)   34 Golovatskaya and Nikonova (2017)        8 Acknowledgements  Development of this database was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) grant no. KN 929/23-1 to Klaus-Holger Knorr and grant no. PE 1632/18-1 to Edzer Pebesma.     References    Arp, Christopher D., David J. Cooper, and John D. Stednick. 1999. \u201cThe Effects of Acid Rock Drainage on Carex Aquatilis Leaf Litter Decomposition in Rocky Mountain Fens.\u201d Wetlands 19 (3): 665\u201374. https://doi.org/10.1007/BF03161703.  Asada, Taro, and Barry G. Warner. 2005. \u201cSurface Peat Mass and Carbon Balance in a Hypermaritime Peatland.\u201d Soil Science Society of America Journal 69 (2): 549\u201362. https://doi.org/10.2136/sssaj2005.0549.  Asada, Taro, Barry G Warner, and Allen Banner. 2004. \u201cSphagnum Invasion After Clear-Cutting and Excavator Mounding in a Hypermaritime Forest of British Columbia.\u201d Canadian Journal of Forest Research 34 (8): 1730\u201346. https://doi.org/10.1139/x04-042.  Bartsch, I., and T. R. Moore. 1985. \u201cA Preliminary Investigation of Primary Production and Decomposition in Four Peatlands Near Schefferville, Qu\u00e9bec.\u201d Canadian Journal of Botany 63 (7): 1241\u201348. https://doi.org/10.1139/b85-171.  Bengtsson, Fia, Gustaf Granath, and H\u00e5kan Rydin. 2016. \u201cPhotosynthesis, Growth, and Decay Traits in Sphagnum \u2013 a Multispecies Comparison.\u201d Ecology and Evolution 6 (10): 3325\u201341. https://doi.org/10.1002/ece3.2119.  \u2014\u2014\u2014. 2017. \u201cData from: Photosynthesis, Growth, and Decay Traits in Sphagnum \u2013 a Multispecies Comparison.\u201d Dryad. https://doi.org/10.5061/DRYAD.62054.  Bengtsson, Fia, H\u00e5kan Rydin, and Tom\u00e1\u0161 H\u00e1jek. 2018a. \u201cData from: Biochemical Determinants of Litter Quality in 15 Species of Sphagnum.\u201d Dryad. https://doi.org/10.5061/DRYAD.4F8D2.  \u2014\u2014\u2014. 2018b. \u201cBiochemical Determinants of Litter Quality in 15 Species of Sphagnum.\u201d Plant and Soil 425 (1-2): 161\u201376. https://doi.org/10.1007/s11104-018-3579-8.  Bona, Kelly Ann, Arlene Hilger, Magdalena Burgess, Nicole Wozney, and Cindy Shaw. 2018. \u201cA Peatland Productivity and Decomposition Parameter Database.\u201d Ecology 99 (10): 2406\u20136. https://doi.org/10.1002/ecy.2462.  Bragazza, Luca, and Paola Iacumin. 2009. \u201cSeasonal Variation in Carbon Isotopic Composition of Bog Plant Litter During 3 Years of Field Decomposition.\u201d Biology and Fertility of Soils 46 (1): 73\u201377. https://doi.org/10.1007/s00374-009-0406-7.  Breeuwer, Angela, Monique Heijmans, Bjorn J. M. Robroek, Juul Limpens, and Frank Berendse. 2008. \u201cThe Effect of Increased Temperature and Nitrogen Deposition on Decomposition in Bogs.\u201d Oikos 117 (8): 1258\u201368. https://doi.org/10.1111/j.0030-1299.2008.16518.x.  Farrish, K. W., and D. F. Grigal. 1985. \u201cMass Loss in a Forested Bog: Relation to Hummock and Hollow Microrelief.\u201d Canadian Journal of Soil Science 65 (2): 375\u201378. https://doi.org/10.4141/cjss85-042.  \u2014\u2014\u2014. 1988. \u201cDecomposition in an Omrotrophic Bog and a Minerotrophic Fen in Minnesota.\u201d Soil Science 145 (5): 353\u201358. https://doi.org/10.1097/00010694-198805000-00005.  Golovatskaya, E. A., and L. G. Nikonova. 2017. \u201cThe Influence of the Bog Water Level on the Transformation of Sphagnum Mosses in Peat Soils of Oligotrophic Bogs.\u201d Eurasian Soil Science 50 (5): 580\u201388. https://doi.org/10.1134/S1064229317030036.  Hagemann, Ulrike, and Martin T. Moroni. 2015. \u201cMoss and Lichen Decomposition in Old-Growth and Harvested High-Boreal Forests Estimated Using the Litterbag and Minicontainer Methods.\u201d Soil Biology and Biochemistry 87 (August): 10\u201324. https://doi.org/10.1016/j.soilbio.2015.04.002.  \u2014\u2014\u2014. 2016. \u201cData on Moss and Lichen Decomposition Rates and Nutrient Loss from Old-Growth and Harvested High-Boreal Forests Estimated Using the Litterbag and Minicontainer Methods.\u201d Leibniz-Zentrum f\u00fcr Agrarlandschaftsforschung (ZALF) e.V. https://doi.org/10.4228/ZALF.2007.290.  Hiroki, Mikiya, and Makoto M. Watanabe. 1996. \u201cMicrobial Community and Rate of Cellulose Decomposition in Peat Soils in a Mire.\u201d Soil Science and Plant Nutrition 42 (4): 893\u2013903. https://doi.org/10.1080/00380768.1996.10416636.  Hogg, Edward H., Victor J. Lieffers, and Ross W. Wein. 1992. \u201cPotential Carbon Losses from Peat Profiles: Effects of Temperature, Drought Cycles, and Fire.\u201d Ecological Applications 2 (3): 298\u2013306. https://doi.org/10.2307/1941863.  Hoorens, Bart, Martin Stroetenga, and Rien Aerts. 2010. \u201cLitter Mixture Interactions at the Level of Plant Functional Types Are Additive.\u201d Ecosystems 13 (1): 90\u201398. https://doi.org/10.1007/s10021-009-9301-1.  Johnson, Loretta C., and Antoni W. H. Damman. 1991. \u201cSpecies-Controlled Sphagnum Decay on a South Swedish Raised Bog.\u201d Oikos 61 (2): 234. https://doi.org/10.2307/3545341.  Jones, Matthew, Margaret O\u2019Brien, Bryce Mecum, Carl Boettiger, Mark Schildhauer, Mitchell Maier, Timothy Whiteaker, Stevan Earl, and Steven Chong. 2019. \u201cEcological Metadata Language Version 2.2.0.\u201d KNB Data Repository. https://doi.org/10.5063/f11834t2.  Lieffers, V. J. 1988. \u201cSphagnum and Cellulose Decomosition in Drained and Natural Areas of an Alberta Peatland.\u201d Canadian Journal of Soil Science 68 (4): 755\u201361. https://doi.org/10.4141/cjss88-073.  Limpens, Juul, and Frank Berendse. 2003. \u201cHow Litter Quality Affects Mass Loss and N Loss from Decomposing Sphagnum.\u201d Oikos 103 (3): 537\u201347. https://doi.org/10.1034/j.1600-0706.2003.12707.x.  M\u00e4kil\u00e4, M., H. S\u00e4\u00e4vuori, A. Grundstr\u00f6m, and T. Suomi. 2018. \u201cSphagnum Decay Patterns and Bog Microtopography in South-Eastern Finland.\u201d Mires and Peat, no. 21 (July): 1\u201312. https://doi.org/10.19189/MaP.2017.OMB.283.  Manninen, S., S. Kivim\u00e4ki, I. D. Leith, S. R. Leeson, and L. J. Sheppard. 2016. \u201cNitrogen Deposition Does Not Enhance Sphagnum Decomposition.\u201d Science of The Total Environment 571 (November): 314\u201322. https://doi.org/10.1016/j.scitotenv.2016.07.152.  M\u00fcller, Kirill, Jeroen Ooms, David James, Saikat DebRoy, Hadley Wickham, and Jeffrey Horner. 2021. \u201cRMariaDB: Database Interface and \u2019MariaDB\u2019 Driver.\u201d  Orwin, Kate H., and Nicholas J. Ostle. 2012. \u201cMoss Species Effects on Peatland Carbon Cycling After Fire: Moss Species Effects on C Cycling After Fire.\u201d Functional Ecology 26 (4): 829\u201336. https://doi.org/10.1111/j.1365-2435.2012.01991.x.  Piatkowski, Bryan T., Joseph B. Yavitt, Merritt R. Turetsky, and A. Jonathan Shaw. 2021. \u201cNatural Selection on a Carbon Cycling Trait Drives Ecosystem Engineering by Sphagnum (Peat Moss).\u201d Proceedings of the Royal Society B: Biological Sciences 288 (1957): 20210609. https://doi.org/10.1098/rspb.2021.0609.  Piatkowski, Bryan, Joseph B. Yavitt, Merritt Turetsky, and A. Jonathan Shaw. 2021. \u201cOnline Data for 'Natural Selection on a Carbon Cycling Trait Drives Ecosystem Engineering by Sphagnum (Peat Moss).',\u201d August. https://doi.org/10.6084/m9.figshare.14109725.v2.  Pick, Joel L., Shinichi Nakagawa, and Daniel W. A. Noble. 2018. \u201cReproducible, Flexible and High-Throughput Data Extraction from Primary Literature: The metaDigitise R Package.\u201d https://doi.org/10.1101/247775.  Prevost, Marcel, Pierre Belleau, and Andr\u00e9 P. Plamondon. 1997. \u201cSubstrate Conditions in a Treed Peatland: Responses to Drainage.\u201d \u00c9coscience 4 (4): 543\u201354. https://doi.org/10.1080/11956860.1997.11682434.  R Core Team. 2022. R: A Language and Environment for Statistical Computing. Manual. Vienna, Austria: R Foundation for Statistical Computing.  Sanger, L. J., M. F. Billett, and M. S. Cresser. 1994. \u201cThe Effects of Acidity on Carbon Fluxes from Ombrotrophic Peat.\u201d Chemistry and Ecology 8 (4): 249\u201364. https://doi.org/10.1080/02757549408038552.  Scheffer, R. A., R. S. P Van Logtestijn, and J. T. A. Verhoeven. 2001. \u201cDecomposition of Carex and Sphagnum Litter in Two Mesotrophic Fens Differing in Dominant Plant Species.\u201d Oikos 92 (1): 44\u201354. https://doi.org/10.1034/j.1600-0706.2001.920106.x.  Scheffer, Robbert A., and Rien Aerts. 2000. \u201cRoot Decomposition and Soil Nutrient and Carbon Cycling in Two Temperate Fen Ecosystems.\u201d Oikos 91 (3): 541\u201349. https://doi.org/10.1034/j.1600-0706.2000.910316.x.  Schieferdecker, Tobias, Kirill M\u00fcller, and Darko Bergant. 2022. \u201cdm: Relational Data Models.\u201d  Strakov\u00e1, Petra, Jani Anttila, Peter Spetz, Veikko Kitunen, Tarja Tapanila, and Raija Laiho. 2010. \u201cLitter Quality and Its Response to Water Level Drawdown in Boreal Peatlands at Plant Species and Community Level.\u201d Plant and Soil 335 (1-2): 501\u201320. https://doi.org/10.1007/s11104-010-0447-6.  Strakov\u00e1, Petra, Timo Penttil\u00e4, Jukka Laine, and Raija Laiho. 2012. \u201cDisentangling Direct and Indirect Effects of Water Table Drawdown on Above- and Belowground Plant Litter Decomposition: Consequences for Accumulation of Organic Matter in Boreal Peatlands.\u201d Global Change Biology 18 (1): 322\u201335. https://doi.org/10.1111/j.1365-2486.2011.02503.x.  Szumigalski, Anthony R., and Suzanne E. Bayley. 1996. \u201cDecomposition Along a Bog to Rich Fen Gradient in Central Alberta, Canada.\u201d Canadian Journal of Botany 74 (4): 573\u201381. https://doi.org/10.1139/b96-073.  Teickner, Henning, and Klaus-Holger Knorr. 2024. \u201cdpeatdecomposition: R Interface to the Peatland Decomposition Database.\u201d  Thormann, Markus N, Suzanne E Bayley, and Randolph S Currah. 2001. \u201cComparison of Decomposition of Belowground and Aboveground Plant Litters in Peatlands of Boreal Alberta, Canada.\u201d Canadian Journal of Botany 79 (1): 9\u201322. https://doi.org/10.1139/b00-138.  Trinder, Clare J., David Johnson, and Rebekka R. E. Artz. 2008. \u201cInteractions Among Fungal Community Structure, Litter Decomposition and Depth of Water Table in a Cutover Peatland.\u201d FEMS Microbiology Ecology 64 (3): 433\u201348. https://doi.org/10.1111/j.1574-6941.2008.00487.x.  \u2014\u2014\u2014. 2009. \u201cLitter Type, but Not Plant Cover, Regulates Initial Litter Decomposition and Fungal Community Structure in a Recolonising Cutover Peatland.\u201d Soil Biology and Biochemistry 41 (3): 651\u201355. https://doi.org/10.1016/j.soilbio.2008.12.006.  Vitt, Dale H. 1990. \u201cGrowth and Production Dynamics of Boreal Mosses over Climatic, Chemical and Topographic Gradients.\u201d Botanical Journal of the Linnean Society 104 (1-3): 35\u201359. https://doi.org/10.1111/j.1095-8339.1990.tb02210.x.  Waddington, J. M., L. Rochefort, and S. Campeau. 2003. \u201cSphagnum Production and Decomposition in a Restored Cutover Peatland.\u201d Wetlands Ecology and Management 11 (1): 85\u201395. https://doi.org/10.1023/A:1022009621693.", "keywords": ["Databases", "Carex", "Sphagnum", "decomposition", "litterbag", "northern peatland", "peatland"], "contacts": [{"organization": "Teickner, Henning, Knorr, Klaus-Holger,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5281/zenodo.14917034"}, {"rel": "self", "type": "application/geo+json", "title": "10.5281/zenodo.14917034", "name": "item", "description": "10.5281/zenodo.14917034", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5281/zenodo.14917034"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-02-24T00:00:00Z"}}, {"id": "10.5281/zenodo.15233915", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:23:21Z", "type": "Report", "title": "Overview of biological degradation of PFAS", "description": "PFAS in the environment are known as \u201cforever chemicals\u201d as they are not easily broken down by\u00a0physical or biological processes. To prevent PFAS from entering the environment, it should be broken\u00a0down at the sources, such as wastewater treatment facilities. Here we investigate two different\u00a0biological degradation methods that could be incorporated in wider PFAS treatment trains to remove\u00a0PFAS during the wastewater treatment process. Both fungal and bacterial degradation were tested\u00a0using white rot fungal enzymes (laccase mediator system) and a community of Pseudomonasbacteria. Degradation times were kept within a practical range (up to 6 weeks), and degradation\u00a0efficiency was determined using an effect-based bioassay. Laccase-mediator degradation of both\u00a0PFOA and PFOS remained inconclusive, in which initially there was less signal in the bioassay up till\u00a0week 4, but this increased again in weeks 5 and 6. For the bacterial degradation using a Pseudomonascommunity, robust degradation of PFAS-containing firefighting foam was observed in two\u00a0independent experiments where approximately 80% of the PFAS signal disappeared after 6 weeks.\u00a0Bacterial degradation showed a better degradation profile than using fungal enzymes, which may be\u00a0caused by the constant renewal of degradation enzymes produced by the growing bacteria. For the\u00a0fungal degradation experiments, enzymes were only renewed once a week. Weekly renewal may\u00a0mean that degradation takes longer and beyond the incubation times used in this study.", "keywords": ["bioremedation", "PFAS", "Biodegradation"], "contacts": [{"organization": "de Boer, Tjalf", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5281/zenodo.15233915"}, {"rel": "self", "type": "application/geo+json", "title": "10.5281/zenodo.15233915", "name": "item", "description": "10.5281/zenodo.15233915", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5281/zenodo.15233915"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-04-17T00:00:00Z"}}, {"id": "10.5281/zenodo.15328215", "type": "Feature", "geometry": null, "properties": {"license": "unspecified", "updated": "2026-04-04T16:23:23Z", "type": "Dataset", "title": "1000 Soils Pilot Dataset, version 8, May 2025", "description": "This record hosts data generated by the 1000 Soils Pilot. Data will be updated as more become available. Please see the most recent data upload for current data.  A beta visualization tool is available for some data types at\u00a0https://shinyproxy.emsl.pnnl.gov/app/1000soils. Please submit any suggestions or comments through the 'contact' tab. We are actively working to improve visualizations and value all feedback.  Data completed include:    Geochemistry, texture, respiration, and enzyme activities  FTICR-MS organic matter chemistry  Microbial biomass C and N  TOC/TDN of water-extractable OM  X-ray computed tomography (derived metrics available here, raw data available upon request)  Metagenomes; a variety of data formats are available upon request  Soil hydraulic properties   Data in progress:    LC-MS/MS in development, timeline TBD, inquire for status   1000S_processed_BGC_summary.csv contains all available biogeochemical data; microbial biomass C and N; and TOC/TDN of water-extractable OM; and\u00a0  1000S_Tomography.xslx contains a summary of data generated via X-ray computed tomography.  icr_v2_corems2.csv contains FTICR-MS data processed by CoreMS version 2. These data are merged by formula across instrument runs to enable cross-sample comparisons. Technical replicates are merged by retaining peaks present in 2 out of 3 replicates.  1000Soils_Metadata_Site_Mastersheet_v1.csv contains site information.  Soil Hydraulics_corrected_02042025.xlsx contains soil hydraulics information.  Readme File_v4.xlsx is the readme file.  Please contact the MONet project (monet.emsl@pnnl.gov) or Emily Graham (emily.graham@pnnl.gov) with questions.  The following file and all raw data are\u00a0available upon request:  icr_by_mass_for_single_sample_analysis_only.csv\u00a0contains FTICR-MS data processed by CoreMS and is intended for usage in the calculation of biochemical transformations within samples only. These data are not acceptable for cross-sample comparison of masses because they are from multiple instrument runs.  For more information, please see: https://www.emsl.pnnl.gov/monet and https://sc-data.emsl.pnnl.gov/monet  Acknowledgment:\u00a0  Soil data were provided by the Molecular Observation Network (MONet) at the Environmental Molecular Sciences Laboratory (https://ror.org/04rc0xn13), a DOE Office of Science user facility sponsored by the Biological and Environmental Research program under Contract No. DE-AC05-76RL01830. The work (proposal: 10.46936/10.25585/60008970) conducted by the U.S. Department of Energy, Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science user facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.\u00a0  The Molecular Observation Network (MONet) database is an open, FAIR, and publicly available compilation of the molecular and microstructural properties of soil. Data in the MONet open science database can be found at\u00a0https://sc-data.emsl.pnnl.gov/.", "keywords": ["2. Zero hunger", "decomposition", "13. Climate action", "FTICR-MS", "biogeochemistry", "carbon", "molecular", "15. Life on land", "6. Clean water", "soil"]}, "links": [{"href": "https://doi.org/10.5281/zenodo.15328215"}, {"rel": "self", "type": "application/geo+json", "title": "10.5281/zenodo.15328215", "name": "item", "description": "10.5281/zenodo.15328215", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5281/zenodo.15328215"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-05-02T00:00:00Z"}}, {"id": "10.5281/zenodo.6411321", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:23:56Z", "type": "Dataset", "title": "Litter decomposition is moderated by scale-dependent microenvironmental variation in tundra ecosystems", "description": "<strong>QHI_crop.tiff </strong>= We carried out topographic surveys using unoccupied aerial vehicles photogrammetry in August 2017. We used three UAV platforms to collect RGB multispectral data at a fine (3 cm) spatial resolution: DJI Phantom 4 Pro and Advanced (multicopter), and Phantom FX-61 (fixed wing), and used used structure from motion with multiview steriopsis to obtain a fine-grain 10 cm spatial resolution digital surface model and orthomosaic as described in Cunliffe et al. (2019a, 2019b). <strong>thermsum.tif </strong>= We used the microclima package in R (Kearney et al., 2020; Maclean et al., 2019) to model surface air temperature at a 1-m spatial grain. Using our fine resolution DSM, we modelled mean surface temperatures at the study site for each day spanning the teabag burial period of 13th July to 9th August 2017. The microclima model incorporates local daily climate, radiation, cloud cover and coastal exposure data from gridded global datasets derived from RCNEP (Kemp et al., 2012). We summed the 28 TIF files produced through this modelling technique to produce a 28-day thermal sum variable - a metric which captures the overall heating of the ground surface over the course of the experiment. <strong>Cited Works:</strong> Cunliffe, A., I. Myers-Smith. J. Kerby and W. Palmer (2019a). Orthomosaic of permafrost landscape on Qikiqtaruk \u2013 Herschel Island, Yukon, Canada: August 2017. NERC Polar Data Centre. DOI:10.5285/29bf1c9f-a39a-452c-b9f9-de35d9fb9179. Cunliffe, A., G. Tanski, B. Radosavljevic, W. Palmer, T. Sachs, H. Lantuit, J. Kerby, and I. Myers-Smith (2019b) Rapid retreat of permafrost coastline observed with aerial drone photogrammetry. The Cryosphere 13(5):1513-1528. DOI: 10.5194/tc-13-1513-2019. Maclean, I. M. (2020). Predicting future climate at high spatial and temporal resolution. <em>Global Change Biology</em>, <em>26</em>(2), 1003\u20131011. Kearney, M. R., Gillingham, P. K., Bramer, I., Duffy, J. P., &amp; Maclean, I. M. (2020). A method for computing hourly, historical, terrain\u2010corrected microclimate anywhere on Earth. <em>Methods in Ecology and Evolution</em>, <em>11</em>(1), 38-43. Kemp, M. U., Van Loon, E. E., Shamoun-Baranes, J., &amp; Bouten, W. (2012). RNCEP: global weather and climate data at your fingertips. <em>Methods in Ecology &amp; Evolution</em>, <em>3</em>(1), 65-70. <strong>Paper Abstract:</strong> <strong>The Arctic tundra is one of the world\u2019s largest organic carbon stores, yet this carbon is vulnerable to accelerated decomposition as climate warming progresses. We currently know very little about landscape-scale controls of litter decomposition in tundra ecosystems, which hinders our understanding of the global carbon cycle. </strong> <strong>Here, we examined how local-scale topography, surface air temperature, soil moisture and permafrost conditions influenced litter decomposition rates across a heterogeneous tundra landscape on Qikiqtaruk - Herschel Island (Yukon, Canada).</strong> <strong>We used the Tea Bag Index protocol to derive decomposition metrics which we then compared across environmental gradients, including thermal sum surface temperature data derived from fine-resolution microclimate data modelled from drone derived topographic data.</strong> <strong>We found greater green tea litter mass loss and faster decomposition rates in wetter and warmer areas within the landscape, and to a lesser extent in areas with deeper permafrost active layer thickness.</strong> <strong>Spatially heterogeneous belowground conditions (soil moisture and active layer depth) explained variation in decomposition metrics at the landscape-scale (&gt; 10 m) better than surface temperature.</strong> <strong>Surprisingly, there was no strong control of elevation or slope of litter decomposition. We also found higher decomposition rates on North-facing relative to South-facing aspects at microsites that were wetter rather than warmer.</strong>", "keywords": ["dsm", "decomposition", "13. Climate action", "microclima", "15. Life on land", "thermal sum", "microclimate"], "contacts": [{"organization": "Gallois, Elise, Myers-Smith, Isla, Daskalova, Gergana, Kerby, Jeffrey, Thomas, Haydn, Cunliffe, Andrew,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5281/zenodo.6411321"}, {"rel": "self", "type": "application/geo+json", "title": "10.5281/zenodo.6411321", "name": "item", "description": "10.5281/zenodo.6411321", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5281/zenodo.6411321"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-14T00:00:00Z"}}, {"id": "10.5281/zenodo.7193829", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:24:04Z", "type": "Dataset", "title": "Fine-root biomass production, sedge root, sedge leaf, and moss shoot decomposition, soil water-table level, and temperature data from two sedge fens in Finland", "description": "Fine-root biomass production, sedge root, sedge leaf, and Sphagnum moss shoot mass loss data, along with environmental data (soil water-table level, air temperature, soil temperature at 5 cm, and soil temperature at 15 cm) from two sedge fens located in southern Finland (Lakkasuo, Orivesi, 61\u00b048' N 24\u00b019'E) and northern Finland (Lompoloj\u00e4nkk\u00e4, Kittil\u00e4, 68\u00b0N 24\u00b012'E). Data are from a climate change experiment, where warming was induced with open top chambers (OTCs) and drying with shallow ditching. Data are from years 2011-2013.", "keywords": ["decomposition", "fen", "fine roots", "carbon cycling", "15. Life on land", "6. Clean water", "wetland", "litter mass loss", "climate change", "root biomass production", "13. Climate action", "sedge", "peatland", "mire", "organic matter accumulation"], "contacts": [{"organization": "Bhuiyan, Rabbil, M\u00e4kiranta, P\u00e4ivi, Strakov\u00e1, Petra, Fritze, Hannu, Minkkinen, Kari, Penttil\u00e4, Timo, Tuittila, Eeva-Stiina, Laiho, Raija,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5281/zenodo.7193829"}, {"rel": "self", "type": "application/geo+json", "title": "10.5281/zenodo.7193829", "name": "item", "description": "10.5281/zenodo.7193829", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5281/zenodo.7193829"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-11-15T00:00:00Z"}}, {"id": "10.5281/zenodo.8146228", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:24:13Z", "type": "Dataset", "title": "Dataset of the manuscript \"Assessing the influence of Eisenia andrei on the decomposition of Casuarina equisetifolia litter in vermicompost.\"", "description": "Data generated during an experiment of decomposition of Casuarina equisetifolia litter by the application of vermicompost (VC) or the combination vermicompost + the earthworm Eisenia andrei (E).   Six files are included:   'readme.csv' is a file where we explain the meaning of each column (and in which units is expressed) in each of the other five files.   'earthworm_N_biomass.csv' is a table with the number of Eisenia andrei individuals and the total earthworm fresh weight in each of the experimental units we sampled   'FTIR_spectra.csv' is a file with the raw spectral data we obtained from the litter by Fourier Transform Infrared spectroscopy combined with Attenuated Total Reflectance (FTIR-ATR). First column indicate the wavenumber (cm-1) and the other columns indicate the absorbance values of each litter sample for each wavenumber.   'litter_chemical_composition.csv' is a file with the raw data of the concentrations of different chemical elements measured in C. equisetifolia litter collected at different decomposition times.   'litter_mass_loss.csv' contains the dry weight data of the litter at time 0 and after each collection time, as well as the percentage of litter mass loss with time. .   'mesofaunal_com.csv' are the numbers of individuals of several groups of mesofaunal organisms (collembolans, mites, and others) we recovered in each of our experimental units.", "keywords": ["Fourier Transform Infrared spectroscopy", "decomposition", "Eisenia andrei", "litter", "litterbag experiment", "Casuarina equisetifolia", "microcosm"], "contacts": [{"organization": "Quintela-Sabar\u00eds, Celestino, Mendes, Luis Andr\u00e9, Dom\u00ednguez, Jorge,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5281/zenodo.8146228"}, {"rel": "self", "type": "application/geo+json", "title": "10.5281/zenodo.8146228", "name": "item", "description": "10.5281/zenodo.8146228", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5281/zenodo.8146228"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-07-14T00:00:00Z"}}, {"id": "10261/350658", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:25:09Z", "type": "Journal Article", "created": "2024-03-07", "title": "Decreasing Photoreactivity and Concurrent Change in Dissolved Organic Matter Composition With Increasing Inland Water Residence Time", "description": "Abstract                   <p>Photochemical degradation of dissolved organic matter (DOM) has been the subject of numerous studies; however, its regulation along the inland water continuum is still unclear. We aimed to unravel the DOM photoreactivity and concurrent DOM compositional changes across 30 boreal aquatic ecosystems including peat waters, streams, rivers, and lakes distributed along a water residence time (WRT) gradient. Samples were subjected to a standardized exposure of simulated sunlight. We measured the apparent quantum yield (AQY), which corresponds to DOM photomineralization per photon absorbed, and the compositional change in DOM at bulk and individual compound levels in the original samples and after irradiation. AQY increased with the abundance of terrestrially derived DOM and decreased at higher WRT. Additionally, the photochemical changes in both DOM optical properties and molecular composition resembled changes along the natural boreal WRT gradient at low WRT (&lt;3\uffc2\uffa0years). Accordingly, mass spectrometry revealed that the abundance of photolabile and photoproduced molecules decreased with WRT along the boreal aquatic continuum. Our study highlights the tight link between DOM composition and DOM photodegradation. We suggest that photodegradation is an important driver of DOM composition change in waters with low WRT, where DOM is highly photoreactive.</p", "keywords": ["Ensure sustainable consumption and production patterns", "105904 Environmental research", "water retention time", "http://metadata.un.org/sdg/6", "Oceanografi", " hydrologi och vattenresurser", "http://metadata.un.org/sdg/9", "01 natural sciences", "aquatic continuum", "Oceanography", " Hydrology and Water Resources", "Photodegradation", "14. Life underwater", "SDG 15 \u2013 Leben an Land", "dissolved organic matter quality", "106020 Limnology", "SDG 15 - Life on Land", "0105 earth and related environmental sciences", "Ekologi", "Ensure availability and sustainable management of water and sanitation for all", "Ecology", "Dissolved organic matter quality", "Water retention time", "Aquatic continuum", "15. Life on land", "Milj\u00f6vetenskap", "106020 Limnologie", "6. Clean water", "Apparent quantum yield", "Build resilient infrastructure", " promote inclusive and sustainable industrialization and foster innovation", "SDG 6 \u2013 Sauberes Wasser und Sanit\u00e4reinrichtungen", "13. Climate action", "apparent quantum yield", "photodegradation", "105904 Umweltforschung", "SDG 6 - Clean Water and Sanitation", "Environmental Sciences"]}, "links": [{"href": "https://doi.org/10261/350658"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Biogeochemical%20Cycles", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10261/350658", "name": "item", "description": "10261/350658", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10261/350658"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-10-03T00:00:00Z"}}, {"id": "10261/383825", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:25:11Z", "type": "Dataset", "title": "[Dataset] Decreasing Photoreactivity and Concurrent Change in Dissolved Organic Matter Composition With Increasing Inland Water Residence Time", "description": "Open AccessPeer reviewed", "keywords": ["Ensure availability and sustainable management of water and sanitation for all", "Ensure sustainable consumption and production patterns", "Make cities and human settlements inclusive", " safe", " resilient and sustainable", "Dissolved organic matter quality", "Photodegradation", "Water retention time", "http://metadata.un.org/sdg/6", "Aquatic continuum", "http://metadata.un.org/sdg/3", "http://metadata.un.org/sdg/11", "Ensure healthy lives and promote well-being for all at all ages", "Apparent quantum yield"], "contacts": [{"organization": "Grasset, C., Einarsdottir, K., Catal\u00e1n, N., Tranvik, L. J., Groeneveld, M., Hawkes, J. A., Attermeyer, Katrin,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10261/383825"}, {"rel": "self", "type": "application/geo+json", "title": "10261/383825", "name": "item", "description": "10261/383825", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10261/383825"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-01-01T00:00:00Z"}}, {"id": "10278/5031900", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:25:13Z", "type": "Journal Article", "created": "2022-12-12", "title": "Pulse, Shunt and Storage: Hydrological Contraction Shapes Processing and Export of Particulate Organic Matter in River Networks", "description": "Abstract<p>Streams and rivers act as landscape-scale bioreactors processing large quantities of terrestrial particulate organic matter (POM). This function is linked to their flow regime, which governs residence times, shapes organic matter reactivity and controls the amount of carbon (C) exported to the atmosphere and coastal oceans. Climate change impacts flow regimes by increasing both flash floods and droughts. Here, we used a modelling approach to explore the consequences of lateral hydrological contraction, that is, the reduction of the wet portion of the streambed, for POM decomposition and transport at the river network scale. Our model integrates seasonal leaf litter input as generator of POM, transient storage of POM on wet and dry streambed portions with associated decomposition and ensuing changes in reactivity, and transport dynamics through a dendritic river network. Simulations showed that the amount of POM exported from the river network and its average reactivity increased with lateral hydrological contraction, due to the combination of (1) low processing of POM while stored on dry streambeds, and (2) large shunting during flashy events. The sensitivity analysis further supported that high lateral hydrological contraction leads to higher export of higher reactivity POM, regardless of transport coefficient values, average reactivity of fresh leaf litter and differences between POM reactivity under wet and dry conditions. Our study incorporates storage in dry streambed areas into the pulse-shunt concept (Raymond and others in Ecology 97(1):5\uffe2\uff80\uff9316, 2016. https://doi.org/10.1890/14-1684.1), providing a mechanistic framework and testable predictions about leaf litter storage, transport and decomposition in fluvial networks.</p", "keywords": ["DECOMPOSITION", "DYNAMICS", "0106 biological sciences", "330", "FLOW", "WOOD", "01 natural sciences", "Modelling", "Article", "LEAF", "preconditioning", "leaf litter; stream; catchment; organic carbon; organic matter degradation; carbon cycling; preconditioning; flow intermittence; modelling", "HETEROGENEITY", "Organic carbon", "organic matter degradation", "0105 earth and related environmental sciences", "[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", "CARBON FLUXES", "Atmosphere", "[SDU.OCEAN] Sciences of the Universe [physics]/Ocean", " Atmosphere", "Leaf litter", "Carbon cycle", "15. Life on land", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "flow intermittence", "6. Clean water", "13. Climate action", "STREAM", "Stream", "Catchments", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", "environment"]}, "links": [{"href": "https://iris.unive.it/bitstream/10278/5031900/2/Catalan_et_al_Ecosystems_2023.pdf"}, {"href": "https://link.springer.com/content/pdf/10.1007/s10021-022-00802-4.pdf"}, {"href": "https://doi.org/10278/5031900"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecosystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10278/5031900", "name": "item", "description": "10278/5031900", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10278/5031900"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-12-12T00:00:00Z"}}, {"id": "10486/698417", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:25:17Z", "type": "Journal Article", "created": "2020-05-21", "title": "Comparative Genomics of the Rhodococcus Genus Shows Wide Distribution of Biodegradation Traits", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The genus Rhodococcus exhibits great potential for bioremediation applications due to its huge metabolic diversity, including biotransformation of aromatic and aliphatic compounds. Comparative genomic studies of this genus are limited to a small number of genomes, while the high number of sequenced strains to date could provide more information about the Rhodococcus diversity. Phylogenomic analysis of 327 Rhodococcus genomes and clustering of intergenomic distances identified 42 phylogenomic groups and 83 species-level clusters. Rarefaction models show that these numbers are likely to increase as new Rhodococcus strains are sequenced. The Rhodococcus genus possesses a small \u201chard\u201d core genome consisting of 381 orthologous groups (OGs), while a \u201csoft\u201d core genome of 1253 OGs is reached with 99.16% of the genomes. Models of sequentially randomly added genomes show that a small number of genomes are enough to explain most of the shared diversity of the Rhodococcus strains, while the \u201copen\u201d pangenome and strain-specific genome evidence that the diversity of the genus will increase, as new genomes still add more OGs to the whole genomic set. Most rhodococci possess genes involved in the degradation of aliphatic and aromatic compounds, while short-chain alkane degradation is restricted to a certain number of groups, among which a specific particulate methane monooxygenase (pMMO) is only found in Rhodococcus sp. WAY2. The analysis of Rieske 2Fe-2S dioxygenases among rhodococci genomes revealed that most of these enzymes remain uncharacterized.</p></article>", "keywords": ["0301 basic medicine", "QH301-705.5", "Comparative genomics", "Phylogenomics", "phylogenomics", "comparative genomics", "Biolog\u00eda y Biomedicina / Biolog\u00eda", "biodegradation", "Article", "03 medical and health sciences", "Biodegradation", "Rhodococcus", "Biology (General)", "Rhodococcus; comparative genomics; phylogenomics; biodegradation", "<i>Rhodococcus</i>"]}, "links": [{"href": "http://www.mdpi.com/2076-2607/8/5/774/pdf"}, {"href": "https://www.mdpi.com/2076-2607/8/5/774/pdf"}, {"href": "https://doi.org/10486/698417"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microorganisms", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10486/698417", "name": "item", "description": "10486/698417", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10486/698417"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-05-21T00:00:00Z"}}, {"id": "11104/0309544", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:25:24Z", "type": "Journal Article", "created": "2020-04-02", "title": "Analysis of the biodegradative and adaptive potential of the novel polychlorinated biphenyl degrader Rhodococcus sp. WAY2 revealed by its complete genome sequence", "description": "<p>The complete genome sequence of                                                Rhodococcus                                          sp. WAY2 (WAY2) consists of a circular chromosome, three linear replicons and a small circular plasmid. The linear replicons contain typical actinobacterial invertron-type telomeres with the central CGTXCGC motif. Comparative phylogenetic analysis of the 16S rRNA gene along with phylogenomic analysis based on the genome-to-genome blast distance phylogeny (GBDP) algorithm and digital DNA\uffe2\uff80\uff93DNA hybridization (dDDH) with other                                                Rhodococcus                                          type strains resulted in a clear differentiation of WAY2, which is likely a new species. The genome of WAY2 contains five distinct clusters of bph, etb and nah genes, putatively involved in the degradation of several aromatic compounds. These clusters are distributed throughout the linear plasmids. The high sequence homology of the ring-hydroxylating subunits of these systems with other known enzymes has allowed us to model the range of aromatic substrates they could degrade. Further functional characterization revealed that WAY2 was able to grow with biphenyl, naphthalene and xylene as sole carbon and energy sources, and could oxidize multiple aromatic compounds, including ethylbenzene, phenanthrene, dibenzofuran and toluene. In addition, WAY2 was able to co-metabolize 23 polychlorinated biphenyl congeners, consistent with the five different ring-hydroxylating systems encoded by its genome. WAY2 could also use n-alkanes of various chain-lengths as a sole carbon source, probably due to the presence of alkB and ladA gene copies, which are only found in its chromosome. These results show that WAY2 has a potential to be used for the biodegradation of multiple organic compounds.</p", "keywords": ["0301 basic medicine", "0303 health sciences", "PCB", "Whole Genome Sequencing", "AlkB Enzymes", "High-Throughput Nucleotide Sequencing", "PAH", "Naphthalenes", "Xylenes", "Biolog\u00eda y Biomedicina / Biolog\u00eda", "biodegradation", "Polychlorinated Biphenyls", "Hydrocarbons", "Complete genome", "03 medical and health sciences", "Biodegradation", " Environmental", "RNA", " Ribosomal", " 16S", "Biodegradation", "Cluster Analysis", "Rhodococcus", "Phylogeny", "Research Article"]}, "links": [{"href": "https://doi.org/11104/0309544"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Genomics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "11104/0309544", "name": "item", "description": "11104/0309544", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/11104/0309544"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?facets=true&offset=50&soil_functions=decomposition&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?facets=true&offset=50&soil_functions=decomposition&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "prev", "title": "items (prev)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?facets=true&soil_functions=decomposition&offset=0", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?facets=true&soil_functions=decomposition&offset=100", "hreflang": "en-US"}], "numberMatched": 123, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-04-04T17:43:23.461158Z"}