Fungal metabolic carbon acquisition and its subsequent partitioning between biomass production and respiration, i.e. the carbon-use efficiency (CUE), are central parameters in biogeochemical modeling. However, current available techniques for estimating these parameters are all associated with practical and theoretical shortcomings, making assessments unreliable. Gene expression analyses hold the prospect of phenotype prediction by indirect means, providing new opportunities to obtain information about metabolic priorities. We cultured four different fungal isolates (Chalara longipes, Laccaria bicolor, Serpula lacrymans and Trichoderma harzianum) in liquid media with contrasting nitrogen availability and measured growth rates and respiration to calculate CUE. By relating gene expression markers to measured carbon fluxes, we identified genes coding for 1,3-\uffce\uffb2-glucan synthase and 2-oxoglutarate dehydrogenase as suitable markers for growth and respiration, respectively, capturing both intraspecific variation as well as within-strain variation dependent on growth medium. A transcript index based on these markers correlated significantly with differences in CUE between the fungal isolates. Our study paves the way for the use of these markers to assess differences in growth, respiration and CUE in natural fungal communities, using metatranscriptomic or the RT-qPCR approach.n) and stomatal conductance (Gs) decreased significantly under the water stressed treatments across the N treatments mainly ascribed to the decreased plant water status. The moderate water stress reduced the photosynthetic capacity and activity and also caused damage to the structure of leaves, resulting in the significant reduction of An, and thus decreased WUEi. The dark respiration (Rd) was significantly decreased due to the damage of mitochondria, however, the Rd/An increased significantly and the carbon gain was seriously compromised, eventually inhibiting biomass growth under the moderately water stressed treatment. Increasing N dose further aggravated the severity of water deficit, decreased An, Gs and WUEi, damaged the structure and reduced the number of mitochondria of leaves, while increased Rd/An considerably under moderate water stress. Consequently, the biomass accumulation, carbon gain and plant level WUEp in the moderately water stressed treatment decreased markedly under the high N supply. Therefore, excessive N application should be avoided when plants suffer soil water stress in maize production.", "keywords": ["0106 biological sciences", "2. Zero hunger", "Nitrogen", "Respiration", "Water potential", "Water", "Stomatal conductance", "04 agricultural and veterinary sciences", "15. Life on land", "Zea mays", "01 natural sciences", "Carbon", "6. Clean water", "Plant Leaves", "Soil", "Response curve", "Gas exchange", "0401 agriculture", " forestry", " and fisheries", "Photosynthesis", "Water deficit"]}, "links": [{"href": "https://doi.org/10.1016/j.plaphy.2021.07.014"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Physiology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.plaphy.2021.07.014", "name": "item", "description": "10.1016/j.plaphy.2021.07.014", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.plaphy.2021.07.014"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-09-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2014.04.008", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:17:11Z", "type": "Journal Article", "created": "2014-04-21", "title": "Soil Carbon Stocks And Accumulation In Young Mangrove Forests", "description": "Abstract Mangrove reforestation and afforestation programs have been initiated in many countries recently to compensate for historical losses. At the same time, awareness of the high carbon (C) sink potential of mangrove forests is growing, and C sequestration is beginning to be considered among forestation goals. To assess whether and at what rate C accumulates in the soil of young mangrove forests following afforestation, we conducted a field study at an afforestation project in southeast China, including repeated measures taken over six years at two young forests (consisting of Kandelia obovata and Sonneratia apetala , aged 0\u20136 years old), and also a chronosequence of forests aged 0 (mudflat), 6 (both species), 20 ( S.\u00a0apetala ), and 70 ( K.\u00a0obovata ) years old. In the repeated measures, surface (0\u201310\u00a0cm) soil C concentration (%C of dry soil mass) increased significantly over six years, from 1.14% to 1.52% ( K.\u00a0obovata ) and 1.23% to 1.68% ( S.\u00a0apetala ). The rates of increase did not differ significantly between the two species, despite much greater biomass of S.\u00a0apetala . In the chronosequence, soil C also increased with age across sites, but only the 70-year-old forest was statistically different, suggesting that localized environmental differences may obscure age-related patterns in soil C. At all sites, soil C concentration for 1-m soil depth (0.62%\u20132.43%) was low compared to published global averages, yet the estimated soil C accumulation rate (155\u00a0g\u00a0C\u00a0m \u22122 \u00a0y \u22121 ) was comparable to published averages for mature forests. We supported this field study with a literature review of similar studies containing soil C concentration data from young mangrove forests: data compiled from 15 studies, comprising 31 sites, showed consistent, positive changes in soil C concentration with forest age, even in the youngest (", "keywords": ["SEDIMENT ACCUMULATION", "WETLAND SOILS", "SOUTHERN CHINA", "SEQUESTRATION", "15. Life on land", "01 natural sciences", "333", "FRENCH-GUIANA", "PLANTATIONS", "ORGANIC-MATTER", "AFFORESTATION", "BENTHIC DECOMPOSITION", "RESTORATION", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2014.04.008"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2014.04.008", "name": "item", "description": "10.1016/j.soilbio.2014.04.008", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2014.04.008"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-08-01T00:00:00Z"}}, {"id": "10.1016/j.still.2011.01.001", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:17:23Z", "type": "Journal Article", "created": "2011-02-04", "title": "Determination Of The Quality Index Of A Paleudult Under Sunflower Culture And Different Management Systems", "description": "Soil is an essential resource for life and its properties are susceptible to be modified by tillage systems. The impact of management practices on soil functions can be assessed through a soil quality index. It is interesting to assess soil quality in different soil types. Therefore, the aim of this study was to determine the soil quality index of a Paleudult under different management conditions and sunflower culture. The experiment was carried out in Botucatu (SP, Brazil), in an 11-year non-tilled area used for growing soybean and maize during summer and black oat or triticale in winter. Four management systems were considered: no-tillage with a hoe planter (NTh), no-tillage with a double-disk planter (NTd), reduced tillage (RT) and conventional tillage (CT). Soil samples were taken from the planting lines at harvest time. To determine the soil quality indices, following the methodology proposed by Karlen and Stott (1994), three main soil functions were assessed: soil capacity for root development, water storage capacity of the soil and nutrient supply capacity of the soil. The studied Paleudult was considered a soil with good quality under all the observed management systems. However, the soil quality indices varied between treatments being 0.64, 0.68, 0.86 and 0.79 under NTh, NTd, RT and CT, respectively. Physical attributes such as resistance to penetration and macroporosity increased the soil quality index in RT and CT compared to NTh and NTd. The soil quality indices obtained suggested that the evaluated soil is adequate for sunflower production under our study conditions. In view of the SQI values, RT is the most suitable management for this site since it preserves soil quality and provides an acceptable sunflower yield.", "keywords": ["Yield", "Sao Paulo [Brazil]", "Glycine max", "Avena strigosa", "maize", "Triticosecale", "Zea mays", "01 natural sciences", "Soil quality", "soil type", "Soil health", "Sustainable development", "Rating", "soybean", "Agricultural machinery", "Productivity", "macropore", "0105 earth and related environmental sciences", "2. Zero hunger", "soil nutrient", "Agriculture", "water storage", "04 agricultural and veterinary sciences", "crop yield", "15. Life on land", "Quality assurance", "6. Clean water", "Management", "Soil productivity", "Fish", "Sustainability", "Indicators of soil quality", "Botucatu", "tillage", "Soils", "dicotyledon", "Helianthus", "0401 agriculture", " forestry", " and fisheries", "Brazil"]}, "links": [{"href": "https://doi.org/10.1016/j.still.2011.01.001"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20and%20Tillage%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.still.2011.01.001", "name": "item", "description": "10.1016/j.still.2011.01.001", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.still.2011.01.001"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-04-01T00:00:00Z"}}, {"id": "10.1111/j.1365-2486.2004.00729.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:19:07Z", "type": "Journal Article", "created": "2004-12-24", "title": "Root Production Is Determined By Radiation Flux In A Temperate Grassland Community", "description": "Abstract
Accurate knowledge of the response of root turnover to a changing climate is needed to predict growth and produce carbon cycle models. A soil warming system and shading were used to vary soil temperature and received radiation independently in a temperate grassland dominated by Holcus lanatus L. Minirhizotrons allowed root growth and turnover to be examined non\uffe2\uff80\uff90destructively. In two short\uffe2\uff80\uff90term (8 week) experiments, root responses to temperature were seasonally distinct. Root number increased when heating was applied during spring, but root death increased during autumnal heating. An experiment lasting 12 months demonstrated that any positive response to temperature was short\uffe2\uff80\uff90lived and that over a full growing season, soil warming led to a reduction in root number and mass due to increased root death during autumn and winter. Root respiration was also insensitive to soil temperature over much of the year. In contrast, root growth was strongly affected by incident radiation. Root biomass, length, birth rate, number and turnover were all reduced by shading. Photosynthesis in H. lanatus exhibited some acclimation to shading, but assimilation rates at growth irradiance were still lower in shaded plants. The negative effects of shading and soil warming on roots were additive. Comparison of root data with environmental measurements demonstrated a number of positive relationships with photosynthetically active radiation, but not with soil temperature. This was true both across the entire data set and within a shade treatment. These results demonstrate that root growth is unlikely to be directly affected by increased soil temperatures as a result of global warming, at least in temperate areas, and that predictions of net primary productivity should not be based on a positive root growth response to temperature.
", "keywords": ["Plantago lanceolata Acclimation", "Root respiration", "belowground production", "soil temperature", "warming", "Belowground net primary production", "550", "Received photosynthetically active radiation", "Root turnover", "Plantago lanceolata", "photosynthetically active radiation", "Plantago", "580", "2. Zero hunger", "Root demography", "Temperature", "04 agricultural and veterinary sciences", "15. Life on land", "Minirhizotrons", "Keywords: acclimation", "climate change", "Holcus lanatus", "13. Climate action", "Lanceolata", "Soil warming", "0401 agriculture", " forestry", " and fisheries", "root system", "grassland", "shading", "respiration"]}, "links": [{"href": "https://eprints.whiterose.ac.uk/495/1/fitterah10.pdf"}, {"href": "https://doi.org/10.1111/j.1365-2486.2004.00729.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-2486.2004.00729.x", "name": "item", "description": "10.1111/j.1365-2486.2004.00729.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-2486.2004.00729.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-01-26T00:00:00Z"}}, {"id": "10.1046/j.1365-2486.2001.00388.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:18:08Z", "type": "Journal Article", "created": "2003-03-11", "title": "Chemistry And Decomposition Of Litter From Populus Tremuloides Michaux Grown At Elevated Atmospheric Co2 And Varying N Availability", "description": "SummaryIt has been hypothesized that greater production of total nonstructural carbohydrates (TNC) in foliage grown under elevated atmospheric carbon dioxide (CO2) will result in higher concentrations of defensive compounds in tree leaf litter, possibly leading to reduced rates of decomposition and nutrient cycling in forest ecosystems of the future. To evaluate the effects of elevated atmospheric CO2on litter chemistry and decomposition, we performed a 111 day laboratory incubation with leaf litter of trembling aspen (Populus tremuloidesMichaux) produced at 36\uffe2\uff80\uff83Pa and 56\uffe2\uff80\uff83Pa CO2and two levels of soil nitrogen (N) availability. Decomposition was quantified as microbially respired CO2and dissolved organic carbon (DOC) in soil solution, and concentrations of nonstructural carbohydrates, N, carbon (C), and condensed tannins were monitored throughout the incubation. Growth under elevated atmospheric CO2did not significantly affect initial litter concentrations of TNC, N, or condensed tannins. Rates of decomposition, measured as both microbially respired CO2and DOC did not differ between litter produced under ambient and elevated CO2. Total C lost from the samples was 38\uffe2\uff80\uff83mg\uffe2\uff80\uff83g\uffe2\uff88\uff921litter as respired CO2and 138\uffe2\uff80\uff83mg\uffe2\uff80\uff83g\uffe2\uff88\uff921litter as DOC, suggesting short\uffe2\uff80\uff90term pulses of dissolved C in soil solution are important components of the terrestrial C cycle. We conclude that litter chemistry and decomposition in trembling aspen are minimally affected by growth under higher concentrations of CO2.
", "keywords": ["Ecology and Evolutionary Biology", "carbohydrates", "Quaking aspen", "forest-soil", "litter-plant", "nitrogen", "nitrogen-", "Microlysimeter", "soil-chemistry", "cycling-", "populus-tremuloides", "Geology and Earth Sciences", "Soil Carbon", "Microbiology of soils", "Carbon cycle", "04 agricultural and veterinary sciences", "GLOBAL-ECOLOGY", "chemical-composition", "Organic-matter", "soil-solution", "nutrient-availability", "Tannin", "leaf-litter", "Science", "decomposition-", "Nutrient enrichment", "Carbohydrates", "carbohydrates-", "respiration-", "carbon-dioxide-enrichment", "Nitrogen in soil", "michigan-", "carbon sinks", "C", "Nutrient budget of forests", "Litter", "Populus tremuloides", "Global Change", "tannins-", "Decomposition", "forest-litter", "Foliage", "Carbon dioxide effects on forest litter", "Climatic changes", "15. Life on land", "carbon-nitrogen-ratio", "Forest litter decomposition", "N Ratio", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "microbial-activities", "nitrogen-content"]}, "links": [{"href": "https://doi.org/10.1046/j.1365-2486.2001.00388.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1046/j.1365-2486.2001.00388.x", "name": "item", "description": "10.1046/j.1365-2486.2001.00388.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1046/j.1365-2486.2001.00388.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2001-01-01T00:00:00Z"}}, {"id": "10.1023/a:1009728007279", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:17:42Z", "type": "Journal Article", "created": "2002-12-22", "title": "Nutrient Imitations In An Extant And Drained Poor Fen: Implications For Restoration", "description": "In a species-rich poor fen (Caricetum nigrae) and a species-poor drained fen, the difference in nutrient limitation of the vegetation was assessed in a full-factorial fertilization experiment with N, P and K. The results were compared to the nutrient ratios of plant material and to chemical analysis of the topsoil. A rewetting experiment with intact sods was carried out in the glasshouse and the results are discussed in view of restoration prospects of drained and degraded peatlands. In the undrained poor fen the above-ground biomass yield was N-limited while the vegetation of the drained fen was K-limited. Experimental rewetting of intact turf samples, taken in the drained site, did not change the biomass yield or the type of nutrient limitation. It was concluded that mire systems which have been subjected to prolonged drainage are inclined to pronounced K-deficiency, probably due to washing out of potassium and harvesting the standing crop. This may hamper restoration projects in degraded peat areas where nature conservation tries to restore species-rich vegetation types with a high nature value.
", "keywords": ["0106 biological sciences", "DECOMPOSITION", "restoration", "fen", "rewetting", "N-MINERALIZATION", "VEGETATION RESPONSE", "Caricetum nigrae", "potassium limitation", "04 agricultural and veterinary sciences", "WET MEADOWS", "15. Life on land", "01 natural sciences", "wetland", "SOIL", "DEFICIENCY", "ORGANIC-MATTER", "STANDS", "PHOSPHORUS", "fertilization", "nutrients", "ECOSYSTEMS", "0401 agriculture", " forestry", " and fisheries", "drainage"], "contacts": [{"organization": "van Duren, I.C., Boeye, Dirk, Grootjans, A.P.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1023/a:1009728007279"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1023/a:1009728007279", "name": "item", "description": "10.1023/a:1009728007279", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1023/a:1009728007279"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1997-11-01T00:00:00Z"}}, {"id": "10.1038/s41586-024-07274-7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:18:00Z", "type": "Journal Article", "created": "2024-04-17", "title": "Environmental drivers of increased ecosystem respiration in a warming tundra", "description": "AbstractArctic and alpine tundra ecosystems are large reservoirs of organic carbon1,2. Climate warming may stimulate ecosystem respiration and release carbon into the atmosphere3,4. The magnitude and persistency of this stimulation and the environmental mechanisms that drive its variation remain uncertain5\uffe2\uff80\uff937. This hampers the accuracy of global land carbon\uffe2\uff80\uff93climate feedback projections7,8. Here we synthesize 136 datasets from 56 open-top chamber in situ warming experiments located at 28 arctic and alpine tundra sites which have been running for less than 1\uffe2\uff80\uff89year up to 25\uffe2\uff80\uff89years. We show that a mean rise of 1.4\uffe2\uff80\uff89\uffc2\uffb0C [confidence interval (CI) 0.9\uffe2\uff80\uff932.0\uffe2\uff80\uff89\uffc2\uffb0C] in air and 0.4\uffe2\uff80\uff89\uffc2\uffb0C [CI 0.2\uffe2\uff80\uff930.7\uffe2\uff80\uff89\uffc2\uffb0C] in soil temperature results in an increase in growing season ecosystem respiration by 30% [CI 22\uffe2\uff80\uff9338%] (n\uffe2\uff80\uff89=\uffe2\uff80\uff89136). Our findings indicate that the stimulation of ecosystem respiration was due to increases in both plant-related and microbial respiration (n\uffe2\uff80\uff89=\uffe2\uff80\uff899) and continued for at least 25\uffe2\uff80\uff89years (n\uffe2\uff80\uff89=\uffe2\uff80\uff89136). The magnitude of the warming effects on respiration was driven by variation in warming-induced changes in local soil conditions, that is, changes in total nitrogen concentration and pH and by context-dependent spatial variation in these conditions, in particular total nitrogen concentration and the carbon:nitrogen ratio. Tundra sites with stronger nitrogen limitations and sites in which warming had stimulated plant and microbial nutrient turnover seemed particularly sensitive in their respiration response to warming. The results highlight the importance of local soil conditions and warming-induced changes therein for future climatic impacts on respiration.High soil organic carbon content, extensive root biomass, and low nutrient availability make alpine grasslands an important ecosystem for assessing the influence of nutrient enrichment on soil respiration (SR). We conducted a four-year (2009\uffe2\uff80\uff932012) field experiment in an alpine grassland on the Qinghai-Tibetan Plateau to examine the individual and combined effects of nitrogen (N, 100\uffe2\uff80\uff89kg ha\uffe2\uff88\uff921year\uffe2\uff88\uff921) and phosphorus (P, 50\uffe2\uff80\uff89kg ha\uffe2\uff88\uff921year\uffe2\uff88\uff921) addition on SR. We found that both N and P addition did not affect the overall growing-season SR but effects varied by year: with N addition SR increased in the first year but decreased during the last two years. However, while P addition did not affect SR during the first two years, SR increased during the last two years. No interactive effects of N and P addition were observed, and both N addition and P addition reduced heterotrophic respiration during the last year of the experiment. N and P addition affected SR via different processes: N mainly affected heterotrophic respiration, whereas P largely influenced autotrophic respiration. Our results highlight the divergent effects of N and P addition on SR and address the important potential of P enrichment for regulating SR and the carbon balance in alpine grasslands.
", "keywords": ["Biomass (ecology)", "0106 biological sciences", "Mechanics and Transport in Unsaturated Soils", "Nitrogen", "Soil Science", "Organic chemistry", "Plant Science", "Thermal Effects on Soil", "01 natural sciences", "Article", "Environmental science", "Agricultural and Biological Sciences", "Engineering", "Soil water", "Genetics", "Biology", "Ecosystem", "Civil and Structural Engineering", "2. Zero hunger", "Soil Fertility", "Ecology", "Bacteria", "Respiration", "Botany", "Life Sciences", "Plant Nutrient Uptake and Signaling Pathways", "Phosphorus", "Soil respiration", "04 agricultural and veterinary sciences", "15. Life on land", "Grassland", "Soil carbon", "Agronomy", "Chemistry", "13. Climate action", "FOS: Biological sciences", "Physical Sciences", "Heterotroph", "Growing season", "0401 agriculture", " forestry", " and fisheries", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Animal science", "Nutrient"]}, "links": [{"href": "https://doi.org/10.1038/srep34786"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Scientific%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/srep34786", "name": "item", "description": "10.1038/srep34786", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/srep34786"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-10-10T00:00:00Z"}}, {"id": "10.1046/j.1526-100x.2002.01037.x", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-04-04T16:18:11Z", "type": "Journal Article", "created": "2003-03-12", "title": "Using Functional Trajectories To Track Constructed Salt Marsh Development In The Great Bay Estuary, Maine/New Hampshire, Usa", "description": "AbstractA growing number of studies have assessed the functional equivalency of restored and natural salt marshes. Several of these have explored the use of functional trajectories to track the increase in restored marsh function over time; however, these studies have disagreed as to the usefulness of such models in long\uffe2\uff80\uff90term predictions of restored marsh development. We compared indicators of four marsh functions (primary production, soil organic matter accumulation, sediment trapping, and maintenance of plant communities) in 6 restored and 11 reference (matched to restored marshes using principal components analysis) salt marshes in the Great Bay Estuary. The restored marshes were all constructed and planted on imported substrate and ranged in age from 1 to 14 years. We used marsh age in a space\uffe2\uff80\uff90for\uffe2\uff80\uff90time substitution to track constructed salt marsh development and explore the use of trajectories. A high degree of variability was observed among natural salt marsh sites, displaying the importance of carefully chosen reference sites. As expected, mean values for constructed site (n = 6) and reference site (n = 11) functions were significantly different. Using constructed marsh age as the independent variable and functional indicator values as dependent variables, nonlinear regression analyses produced several ecologically meaningful trajectories (r\uffe2\uff80\uff832> 0.9), demonstrating that the use of different\uffe2\uff80\uff90aged marshes can be a viable approach to developing functional trajectories. The trajectories illustrated that although indicators of some functions (primary production, sediment deposition, and plant species richness) may reach natural site values relatively quickly (<10 years), others (soil organic matter content) will take longer.
", "keywords": ["salt marsh", "0106 biological sciences", "restoration", "trajectory", "functional equivalency", "creation", "15. Life on land", "01 natural sciences", "wetland"], "contacts": [{"organization": "Morgan, Pamela A., Short, Frederick T.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1046/j.1526-100x.2002.01037.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Restoration%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1046/j.1526-100x.2002.01037.x", "name": "item", "description": "10.1046/j.1526-100x.2002.01037.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1046/j.1526-100x.2002.01037.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2002-08-20T00:00:00Z"}}, {"id": "10.1093/ismejo/wrae025", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:18:39Z", "type": "Journal Article", "created": "2024-02-12", "title": "Stronger compensatory thermal adaptation of soil microbial respiration with higher substrate availability", "description": "AbstractOngoing global warming is expected to augment soil respiration by increasing the microbial activity, driving self-reinforcing feedback to climate change. However, the compensatory thermal adaptation of soil microorganisms and substrate depletion may weaken the effects of rising temperature on soil respiration. To test this hypothesis, we collected soils along a large-scale forest transect in eastern China spanning a natural temperature gradient, and we incubated the soils at different temperatures with or without substrate addition. We combined the exponential thermal response function and a data-driven model to study the interaction effect of thermal adaptation and substrate availability on microbial respiration and compared our results to those from two additional continental and global independent datasets. Modeled results suggested that the effect of thermal adaptation on microbial respiration was greater in areas with higher mean annual temperatures, which is consistent with the compensatory response to warming. In addition, the effect of thermal adaptation on microbial respiration was greater under substrate addition than under substrate depletion, which was also true for the independent datasets reanalyzed using our approach. Our results indicate that thermal adaptation in warmer regions could exert a more pronounced negative impact on microbial respiration when the substrate availability is abundant. These findings improve the body of knowledge on how substrate availability influences the soil microbial community\uffe2\uff80\uff93temperature interactions, which could improve estimates of projected soil carbon losses to the atmosphere through respiration.Residual expressions of enteric emissions favor a more equitable identification of an animal\uffe2\uff80\uff99s methanogenic potential compared with traditional measures of enteric emissions. The objective of this study was to investigate the effect of divergently ranking beef cattle for residual methane emissions (RME) on animal productivity, enteric emissions, and rumen fermentation. Dry matter intake (DMI), growth, feed efficiency, carcass output, and enteric emissions (GreenFeed emissions monitoring system) were recorded on 294 crossbred beef cattle (steers = 135 and heifers = 159; mean age 441 d (SD = 49); initial body weight (BW) of 476 kg (SD = 67)) at the Irish national beef cattle performance test center. Animals were offered a total mixed ration (77% concentrate and 23% forage; 12.6 MJ ME/kg of DM and 12% CP) ad libitum with emissions estimated for 21 d over a mean feed intake measurement period of 91 d. Animals had a mean daily methane emissions (DME) of 229.18 g/d (SD = 45.96), methane yield (MY) of 22.07 g/kg of DMI (SD = 4.06), methane intensity (MI) 0.70 g/kg of carcass weight (SD = 0.15), and RME 0.00 g/d (SD = 0.34). RME was computed as the residuals from a multiple regression model regressing DME on DMI and BW (R2 = 0.45). Animals were ranked into three groups namely high RME (>0.5 SD above the mean), medium RME (\uffc2\uffb10.5 SD above/below the mean), and low RME (>0.5 SD below the mean). Low RME animals produced 17.6% and 30.4% less (P < 0.05) DME compared with medium and high RME animals, respectively. A ~30% reduction in MY and MI was detected in low versus high RME animals. Positive correlations were apparent among all methane traits with RME most highly associated with (r = 0.86) DME. MY and MI were correlated (P < 0.05) with DMI, growth, feed efficiency, and carcass output. High RME had lower (P < 0.05) ruminal propionate compared with low RME animals and increased (P < 0.05) butyrate compared with medium and low RME animals. Propionate was negatively associated (P < 0.05) with all methane traits. Greater acetate:propionate ratio was associated with higher RME (r = 0.18; P < 0.05). Under the ad libitum feeding regime deployed here, RME was the best predictor of DME and only methane trait independent of animal productivity. Ranking animals on RME presents the opportunity to exploit interanimal variation in enteric emissions as well as providing a more equitable index of the methanogenic potential of an animal on which to investigate the underlying biological regulatory mechanisms.
", "keywords": ["2. Zero hunger", "Rumen", "0402 animal and dairy science", "Beef cattle", "04 agricultural and veterinary sciences", "Animal Feed", "Diet", "Eating", "13. Climate action", "residual methane emissions", "Fermentation", "Environmental Animal Science", "Animals", "Cattle", "Female", "Methane"]}, "links": [{"href": "https://academic.oup.com/jas/article-pdf/99/11/skab275/41139199/skab275.pdf"}, {"href": "https://doi.org/10.1093/jas/skab275"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Animal%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/jas/skab275", "name": "item", "description": "10.1093/jas/skab275", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/jas/skab275"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-01T00:00:00Z"}}, {"id": "10.1093/treephys/25.1.57", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:18:42Z", "type": "Journal Article", "created": "2012-01-20", "title": "Forest Thinning And Soil Respiration In A Ponderosa Pine Plantation In The Sierra Nevada", "description": "Soil respiration is controlled by soil temperature, soil water, fine roots, microbial activity, and soil physical and chemical properties. Forest thinning changes soil temperature, soil water content, and root density and activity, and thus changes soil respiration. We measured soil respiration monthly and soil temperature and volumetric soil water continuously in a young ponderosa pine (Pinus ponderosa Dougl. ex P. Laws. & C. Laws.) plantation in the Sierra Nevada Mountains in California from June 1998 to May 2000 (before a thinning that removed 30% of the biomass), and from May to December 2001 (after thinning). Thinning increased the spatial homogeneity of soil temperature and respiration. We conducted a multivariate analysis with two independent variables of soil temperature and water and a categorical variable representing the thinning event to simulate soil respiration and assess the effect of thinning. Thinning did not change the sensitivity of soil respiration to temperature or to water, but decreased total soil respiration by 13% at a given temperature and water content. This decrease in soil respiration was likely associated with the decrease in root density after thinning. With a model driven by continuous soil temperature and water time series, we estimated that total soil respiration was 948, 949 and 831 g C m(-2) year(-1) in the years 1999, 2000 and 2001, respectively. Although thinning reduced soil respiration at a given temperature and water content, because of natural climate variability and the thinning effect on soil temperature and water, actual cumulative soil respiration showed no clear trend following thinning. We conclude that the effect of forest thinning on soil respiration is the combined result of a decrease in root respiration, an increase in soil organic matter, and changes in soil temperature and water due to both thinning and interannual climate variability.", "keywords": ["0106 biological sciences", "Cell Respiration", "Temperature", "Water", "Forestry", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "California", "Pinus ponderosa", "Trees", "Soil", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Seasons"]}, "links": [{"href": "https://doi.org/10.1093/treephys/25.1.57"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Tree%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/treephys/25.1.57", "name": "item", "description": "10.1093/treephys/25.1.57", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/treephys/25.1.57"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-01-01T00:00:00Z"}}, {"id": "10.1111/1365-2745.12593", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:18:52Z", "type": "Journal Article", "created": "2016-04-22", "title": "Drought History Affects Grassland Plant And Microbial Carbon Turnover During And After A Subsequent Drought Event", "description": "Summary
Drought periods are projected to become more severe and more frequent in many European regions. While effects of single strong droughts on plant and microbial carbon (C) dynamics have been studied in some detail, impacts of recurrent drought events are still little understood.
We tested whether the legacy of extreme experimental drought affects responses of plant and microbial C and nitrogen (N) turnover to further drought and rewetting. In a mountain grassland, we conducted a 13C pulse\uffe2\uff80\uff90chase experiment during a naturally occurring drought and rewetting event in plots previously exposed to experimental droughts and in ambient controls (AC). After labelling, we traced 13C below\uffe2\uff80\uff90ground allocation and incorporation into soil microbes using phospholipid fatty acid biomarkers.
Drought history (DH) had no effects on the standing shoot and fine root plant biomass. However, plants with experimental DH displayed decreased shoot N concentrations and increased fine root N concentrations relative to those in AC. During the natural drought, plants with DH assimilated and allocated less 13C below\uffe2\uff80\uff90ground; moreover, fine root respiration was reduced and not fuelled by fresh C compared to plants in AC.
Regardless of DH, microbial biomass remained stable during natural drought and rewetting. Although microbial communities initially differed in their composition between soils with and without DH, they responded to the natural drought and rewetting in a similar way: gram\uffe2\uff80\uff90positive bacteria increased, while fungal and gram\uffe2\uff80\uff90negative bacteria remained stable. In soils with DH, a strongly reduced uptake of recent plant\uffe2\uff80\uff90derived 13C in microbial biomarkers was observed during the natural drought, pointing to a smaller fraction of active microbes or to a microbial community that is less dependent on plant C.
Synthesis. Drought history can induce changes in above\uffe2\uff80\uff90 vs. below\uffe2\uff80\uff90ground plant N concentrations and affect the response of plant C turnover to further droughts and rewetting by decreasing plant C uptake and below\uffe2\uff80\uff90ground allocation. DH does not affect the responses of the microbial community to further droughts and rewetting, but alters microbial functioning, particularly the turnover of recent plant\uffe2\uff80\uff90derived carbon, during and after further drought periods.
", "keywords": ["0301 basic medicine", "plant-soil (below-ground) interactions", "NITROGEN TURNOVER", "Biomass Allocation", "microbial community composition", "Negibacteria", "drought", "phospholipid fatty acid", "nitrogen", "Microbial community composition", "Plant\u2013Soil (Below\u2010ground) Interactions", "Recovery", "ROOT RESPIRATION", "Plant-soil (below-ground) interactions", "CLIMATE EXTREMES", "C pulse labelling", "Below-ground carbon allocation", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "SOIL INTERACTIONS", "below-ground carbon allocation", "C-13 pulse labelling", "Grassland", "6. Clean water", "Europe", "Phospholipid", "ORGANIC-MATTER", "Mountain Region", "Posibacteria", "DIOXIDE PULSES", "Phospholipid fatty acid", "106022 Microbiology", "Root/shoot Ratio", "Belowground Biomass", "Ecosystem Resilience", "Nitrogen", "Microbial Community", "Carbon Isotope", "Soil-vegetation Interaction", "recovery", "SUMMER DROUGHT", "03 medical and health sciences", "Rewetting", "Community Composition", "plant\u2013soil (below-ground) interactions", "WATER-STRESS", "resilience", "Drought", "Resilience", "RESILIENCE", "15. Life on land", "Turnover", "Microbial Activity", "13. Climate action", "Fatty Acid", "RESPONSES"]}, "links": [{"href": "https://doi.org/10.1111/1365-2745.12593"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2745.12593", "name": "item", "description": "10.1111/1365-2745.12593", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2745.12593"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-05-24T00:00:00Z"}}, {"id": "10.1111/avsc.12107", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:18:55Z", "type": "Journal Article", "created": "2014-05-02", "title": "Scale-Dependent Effects Of Grazing And Topographic Heterogeneity On Plant Species Richness In A Dutch Salt Marsh Ecosystem", "description": "AbstractQuestionFor over three decades, low\uffe2\uff80\uff90intensity grazing has been used to maintain or increase plant species richness in European natural areas, but the effects are highly variable. Thus far, good predictors of whether grazing will have positive effects on plant species richness are limited. How does the interplay between low\uffe2\uff80\uff90intensity grazing and topographic heterogeneity affect plant species richness at different spatial scales?
LocationLong\uffe2\uff80\uff90term grazed and ungrazed salt marshes of the Dutch Wadden Sea island of Schiermonnikoog.
MethodsWe selected ten plots of 2200\uffc2\uffa0m2 in grazed and ungrazed areas of our study sites, and recorded and compared plant species richness in 0.1, 1, 10, 100 and 1000\uffc2\uffa0m2 subplots. Topographic heterogeneity was quantified at the plot scale using the standard deviation of the elevation derived from a high\uffe2\uff80\uff90resolution (5\uffc2\uffa0m\uffc2\uffa0\uffc3\uff97\uffc2\uffa05\uffc2\uffa0m) digital elevation model. We calculated species\uffe2\uff80\uff93area relationships to analyse our data.
ResultsWe found that large\uffe2\uff80\uff90scale topographic heterogeneity (based on the whole plot of 2200\uffc2\uffa0m2) positively affects plant species richness at all scales (even at the smallest 0.1\uffe2\uff80\uff90m2 scale), and that grazing has a positive additive effect at the small scales (0.1 and 10\uffc2\uffa0m2). While grazing also had a positive effect on species richness at larger scales (1000\uffc2\uffa0m2), the strength of the effect was dependent on the topographic heterogeneity at that scale. The effectiveness of grazing for increased plant species richness was highest at low topographic heterogeneity, and lowest at intermediate topographic heterogeneity. Effects of intermediate heterogeneity were probably counterbalanced by the effects of grazing.
ConclusionsOur results suggest that the variation in elevation is an important predictor of whether low\uffe2\uff80\uff90intensity grazing has positive effects on plant species richness or not. Grazing appears most beneficial at low topographic heterogeneity, but whether these findings hold for other grazed ecosystems will depend on several factors, most importantly, the relationship between topographic and abiotic heterogeneity. Results of our study are highly relevant for the application of low\uffe2\uff80\uff90intensity grazing as tool for conservation management in salt marshes and other natural areas.
", "keywords": ["0106 biological sciences", "2. Zero hunger", "Topography", "Livestock", "IMPACT", "Vascular plants", "Spatial scale", "DIVERSITY", "Nature management", "Biodiversity", "Conservation", "15. Life on land", "01 natural sciences", "SOIL", "Grazing lawns", "HERBIVORES", "BIODIVERSITY", "Herbivory", "VEGETATION", "14. Life underwater", "Plant-herbivore interactions", "GRASSLANDS", "RESTORATION", "RESPONSES", "ENVIRONMENTS"]}, "links": [{"href": "https://doi.org/10.1111/avsc.12107"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Vegetation%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/avsc.12107", "name": "item", "description": "10.1111/avsc.12107", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/avsc.12107"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-05-02T00:00:00Z"}}, {"id": "10.1111/gcb.13752", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:19:00Z", "type": "Journal Article", "created": "2017-05-08", "title": "Faster turnover of new soil carbon inputs under increased atmospheric CO2", "description": "AbstractRising levels of atmospheric CO2 frequently stimulate plant inputs to soil, but the consequences of these changes for soil carbon (C) dynamics are poorly understood. Plant\uffe2\uff80\uff90derived inputs can accumulate in the soil and become part of the soil C pool (\uffe2\uff80\uff9cnew soil C\uffe2\uff80\uff9d), or accelerate losses of pre\uffe2\uff80\uff90existing (\uffe2\uff80\uff9cold\uffe2\uff80\uff9d) soil C. The dynamics of the new and old pools will likely differ and alter the long\uffe2\uff80\uff90term fate of soil C, but these separate pools, which can be distinguished through isotopic labeling, have not been considered in past syntheses. Using meta\uffe2\uff80\uff90analysis, we found that while elevated CO2 (ranging from 550 to 800 parts per million by volume) stimulates the accumulation of new soil C in the short term (<1\uffc2\uffa0year), these effects do not persist in the longer term (1\uffe2\uff80\uff934\uffc2\uffa0years). Elevated CO2 does not affect the decomposition or the size of the old soil C pool over either temporal scale. Our results are inconsistent with predictions of conventional soil C models and suggest that elevated CO2 might increase turnover rates of new soil C. Because increased turnover rates of new soil C limit the potential for additional soil C sequestration, the capacity of land ecosystems to slow the rise in atmospheric CO2 concentrations may be smaller than previously assumed.
", "keywords": ["roots", "0106 biological sciences", "570", "550", "soil respiration", "01 natural sciences", "Carbon Cycle", "Soil", "atmospheric carbon dioxide", "XXXXXX - Unknown", "soil carbon", "soils", "isotopes", "Ecosystem", "0105 earth and related environmental sciences", "2. Zero hunger", "carbon", "turnover", "04 agricultural and veterinary sciences", "Carbon Dioxide", "Plants", "15. Life on land", "Carbon", "meta-analysis", "roots (botany)", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "respiration"]}, "links": [{"href": "https://doi.org/10.1111/gcb.13752"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.13752", "name": "item", "description": "10.1111/gcb.13752", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.13752"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-06-02T00:00:00Z"}}, {"id": "10.1111/j.1365-2486.2004.00868.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:19:07Z", "type": "Journal Article", "created": "2004-12-02", "title": "Experimental Warming And Burn Severity Alter Soil Co2 Flux And Soil Functional Groups In A Recently Burned Boreal Forest", "description": "AbstractGlobal warming is projected to be greatest in northern regions, where forest fires are also increasing in frequency. Thus, interactions between fire and temperature on soil respiration at high latitudes should be considered in determining feedbacks to climate. We tested the hypothesis that experimental warming will augment soil CO2 flux in a recently burned boreal forest by promoting microbial and root growth, but that this increase will be less apparent in more severely burned areas. We used open\uffe2\uff80\uff90top chambers to raise temperatures 0.4\uffe2\uff80\uff930.9\uffc2\uffb0C across two levels of burn severity in a fire scar in Alaskan black spruce forest. After 3 consecutive years of warming, soil respiration was measured through a portable gas exchange system. Abundance of active microbes was determined by using Biolog EcoPlates\uffe2\uff84\uffa2 for bacteria and ergosterol analysis for fungi. Elevated temperatures increased soil CO2 flux by 20% and reduced root biomass, but had no effect on bacterial or fungal abundance or soil organic matter (SOM) content. Soil respiration, fungal abundance, SOM, and root biomass decreased with increasing burn severity. There were no significant interactions between temperature and burn severity with respect to any measurement. Higher soil respiration rates in the warmed plots may be because of higher metabolic activity of microbes or roots. All together, we found that postfire soils are a greater source of CO2 to the atmosphere under elevated temperatures even in severely burned areas, suggesting that global warming may produce a positive feedback to atmospheric CO2, even in young boreal ecosystems.
", "keywords": ["warming", "carbon", "temperature", "04 agricultural and veterinary sciences", "15. Life on land", "root", "01 natural sciences", "soil", "microbe", "storage", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "fungi", "bacteria", "respiration", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://escholarship.org/content/qt8qh265s2/qt8qh265s2.pdf"}, {"href": "https://doi.org/10.1111/j.1365-2486.2004.00868.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-2486.2004.00868.x", "name": "item", "description": "10.1111/j.1365-2486.2004.00868.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-2486.2004.00868.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-12-01T00:00:00Z"}}, {"id": "10.1111/j.1365-2486.2004.00737.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:19:07Z", "type": "Journal Article", "created": "2004-12-24", "title": "Simulated Chronic No3\u2212Deposition Reduces Soil Respiration In Northern Hardwood Forests", "description": "AbstractChronic N additions to forest ecosystems can enhance soil N availability, potentially leading to reduced C allocation to root systems. This in turn could decrease soil CO2 efflux. We measured soil respiration during the first, fifth, sixth and eighth years of simulated atmospheric NO3\uffe2\uff88\uff92 deposition (3\uffe2\uff80\uff83g\uffe2\uff80\uff83N\uffe2\uff80\uff83m\uffe2\uff88\uff922\uffe2\uff80\uff83yr\uffe2\uff88\uff921) to four sugar maple\uffe2\uff80\uff90dominated northern hardwood forests in Michigan to assess these possibilities. During the first year, soil respiration rates were slightly, but not significantly, higher in the NO3\uffe2\uff88\uff92\uffe2\uff80\uff90amended plots. In all subsequent measurement years, soil respiration rates from NO3\uffe2\uff88\uff92\uffe2\uff80\uff90amended soils were significantly depressed. Soil temperature and soil matric potential were measured concurrently with soil respiration and used to develop regression relationships for predicting soil respiration rates. Estimates of growing season and annual soil CO2 efflux made using these relationships indicate that these C fluxes were depressed by 15% in the eighth year of chronic NO3\uffe2\uff88\uff92 additions. The decrease in soil respiration was not due to reduced C allocation to roots, as root respiration rates, root biomass, and root turnover were not significantly affected by N additions. Aboveground litter also was unchanged by the 8 years of treatment. Of the remaining potential causes for the decline in soil CO2 efflux, reduced microbial respiration appears to be the most likely possibility. Documented reductions in microbial biomass and the activities of extracellular enzymes used for litter degradation on the NO3\uffe2\uff88\uff92\uffe2\uff80\uff90amended plots are consistent with this explanation.
", "keywords": ["Nitrogen Fertilization", "Soil CO 2 Efflux", "Geology and Earth Sciences", "Science", "Atmospheric Nitrate Deposition", "Ecology and Evolutionary Biology", "Root Respiration", "0401 agriculture", " forestry", " and fisheries", "Temperature and Moisture Effects", "04 agricultural and veterinary sciences", "15. Life on land", "Root Biomass"]}, "links": [{"href": "https://doi.org/10.1111/j.1365-2486.2004.00737.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-2486.2004.00737.x", "name": "item", "description": "10.1111/j.1365-2486.2004.00737.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-2486.2004.00737.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-05-07T00:00:00Z"}}, {"id": "10.1111/j.1365-2486.2006.01240.x", "type": "Feature", "geometry": null, "properties": {"license": "Restricted", "updated": "2026-04-04T16:19:09Z", "type": "Journal Article", "created": "2006-09-26", "title": "Interactions between plant growth and soil nutrient cycling under elevated CO2: a meta-analysis", "description": "Abstractfree air carbon dioxide enrichment (FACE) and open top chamber (OTC) studies are valuable tools for evaluating the impact of elevated atmospheric CO2 on nutrient cycling in terrestrial ecosystems. Using meta\uffe2\uff80\uff90analytic techniques, we summarized the results of 117 studies on plant biomass production, soil organic matter dynamics and biological N2 fixation in FACE and OTC experiments. The objective of the analysis was to determine whether elevated CO2 alters nutrient cycling between plants and soil and if so, what the implications are for soil carbon (C) sequestration. Elevated CO2 stimulated gross N immobilization by 22%, whereas gross and net N mineralization rates remained unaffected. In addition, the soil C\uffe2\uff80\uff83:\uffe2\uff80\uff83N ratio and microbial N contents increased under elevated CO2 by 3.8% and 5.8%, respectively. Microbial C contents and soil respiration increased by 7.1% and 17.7%, respectively. Despite the stimulation of microbial activity, soil C input still caused soil C contents to increase by 1.2%\uffe2\uff80\uff83yr\uffe2\uff88\uff921. Namely, elevated CO2 stimulated overall above\uffe2\uff80\uff90 and belowground plant biomass by 21.5% and 28.3%, respectively, thereby outweighing the increase in CO2 respiration. In addition, when comparing experiments under both low and high N availability, soil C contents (+2.2%\uffe2\uff80\uff83yr\uffe2\uff88\uff921) and above\uffe2\uff80\uff90 and belowground plant growth (+20.1% and+33.7%) only increased under elevated CO2 in experiments receiving the high N treatments. Under low N availability, above\uffe2\uff80\uff90 and belowground plant growth increased by only 8.8% and 14.6%, and soil C contents did not increase. Nitrogen fixation was stimulated by elevated CO2 only when additional nutrients were supplied. These results suggest that the main driver of soil C sequestration is soil C input through plant growth, which is strongly controlled by nutrient availability. In unfertilized ecosystems, microbial N immobilization enhances acclimation of plant growth to elevated CO2 in the long\uffe2\uff80\uff90term. Therefore, increased soil C input and soil C sequestration under elevated CO2 can only be sustained in the long\uffe2\uff80\uff90term when additional nutrients are supplied.
", "keywords": ["2. Zero hunger", "enrichment", "microbial biomass", "atmospheric carbon-dioxide", "nitrogen-fixation", "dynamics", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water", "forest", "tallgrass prairie", "13. Climate action", "responses", "0401 agriculture", " forestry", " and fisheries", "organic-matter", "respiration"]}, "links": [{"href": "https://doi.org/10.1111/j.1365-2486.2006.01240.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-2486.2006.01240.x", "name": "item", "description": "10.1111/j.1365-2486.2006.01240.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-2486.2006.01240.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-09-26T00:00:00Z"}}, {"id": "10.1111/j.1365-2486.2008.01793.x", "type": "Feature", "geometry": null, "properties": {"license": "Restricted", "updated": "2026-04-04T16:19:11Z", "type": "Journal Article", "created": "2008-11-03", "title": "Precipitation Pulses Enhance Respiration Of Mediterranean Ecosystems: The Balance Between Organic And Inorganic Components Of Increased Soil Co2efflux", "description": "AbstractIn regions characterized by arid seasons, such as the Mediterranean basin, soil moisture is a major driver of ecosystem CO2 efflux during periods of drought stress. Here, a rain event can induce a disproportional respiratory pulse, releasing an amount of CO2 to the atmosphere that may significantly contribute to the annual ecosystem carbon balance. The mechanisms behind this pulse are unclear, and it is still unknown whether it is due to the stimulation of autotrophic, heterotrophic and/or inorganic CO2 fluxes. On the Mediterranean island of Pianosa, eddy flux measurements showed respiratory pulses after rain events following prolonged drought periods, which occurred in the summer of 2003 and 2006. To investigate the mechanisms of this observed enhanced respiration fluxes and partition of the soil CO2 sources, two water manipulation experiments were performed. The first was designed to estimate the effect of soil rewetting on soil CO2 efflux, in the different ecosystem types existing on the island (i.e. woodland, ex\uffe2\uff80\uff90agricultural and Mediterranean shrubland). The second was a soil CO2 partitioning experiment to investigate the relative contribution of inorganic and organic CO2 sources to soil respiration, under dry and wet soil conditions. Our results suggest that the pulse in the CO2 efflux is primarily due to the enhancement of heterotrophic respiration, likely caused by the degradation of easily decomposable substrates, accumulated in soils during the dry period. In fact, the vegetation at the site was senescent and did not play any significant role in CO2 exchange, as suggested by the absence of diurnal CO2 uptake in eddy covariance measurements. In addition, soil rewetting did not significantly enhance inorganic CO2 efflux.
", "keywords": ["13. Climate action", "mediterranean", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "precipitation", "15. Life on land", "ecosystems", "respiration", "6. Clean water", "components"]}, "links": [{"href": "https://air.uniud.it/bitstream/11390/864899/1/Inglima_et_al_2009.pdf"}, {"href": "https://doi.org/10.1111/j.1365-2486.2008.01793.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-2486.2008.01793.x", "name": "item", "description": "10.1111/j.1365-2486.2008.01793.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-2486.2008.01793.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-04-07T00:00:00Z"}}, {"id": "10.1111/j.1365-3040.2008.01869.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:19:14Z", "type": "Journal Article", "created": "2008-08-05", "title": "Fine-Root Respiration In A Loblolly Pine (Pinus Taedal.) Forest Exposed To Elevated Co2and N Fertilization", "description": "ABSTRACTForest ecosystems release large amounts of carbon to the atmosphere from fine\uffe2\uff80\uff90root respiration (Rr), but the control of this flux and its temperature sensitivity (Q10) are poorly understood. We attempted to: (1) identify the factors limiting this flux using additions of glucose and an electron transport uncoupler (carbonyl cyanide m\uffe2\uff80\uff90chlorophenylhydrazone); and (2) improve yearly estimates of Rr by directly measuring its Q10in situ using temperature\uffe2\uff80\uff90controlled cuvettes buried around intact, attached roots. The proximal limits of Rr of loblolly pine (Pinus taeda L.) trees exposed to free\uffe2\uff80\uff90air CO2 enrichment (FACE) and N fertilization were seasonally variable; enzyme capacity limited Rr in the winter, and a combination of substrate supply and adenylate availability limited Rr in summer months. The limiting factors of Rr were not affected by elevated CO2 or N fertilization. Elevated CO2 increased annual stand\uffe2\uff80\uff90level Rr by 34% whereas the combination of elevated CO2 and N fertilization reduced Rr by 40%. Measurements of in situ Rr with high temporal resolution detected diel patterns that were correlated with canopy photosynthesis with a lag of 1\uffe2\uff80\uff83d or less as measured by eddy covariance, indicating a dynamic link between canopy photosynthesis and root respiration. These results suggest that Rr is coupled to daily canopy photosynthesis and increases with carbon allocation below ground.
", "keywords": ["580", "0106 biological sciences", "Analysis of Variance", "Nitrates", "Atmosphere", "Nitrogen", "Cell Respiration", "Temperature", "Pinus taeda", "Carbon Dioxide", "15. Life on land", "Plant Roots", "01 natural sciences", "Carbon", "Trees", "Glucose", "Oxygen Consumption", "050101 - Ecological Impacts of Climate Change", "13. Climate action", "North Carolina", "Seasons", "Least-Squares Analysis", "Photosynthesis", "Fertilizers", "Ecosystem"]}, "links": [{"href": "https://doi.org/10.1111/j.1365-3040.2008.01869.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%2C%20Cell%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-3040.2008.01869.x", "name": "item", "description": "10.1111/j.1365-3040.2008.01869.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-3040.2008.01869.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-10-06T00:00:00Z"}}, {"id": "10.1111/j.1365-3040.2011.02465.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:19:14Z", "type": "Journal Article", "created": "2011-11-17", "title": "Light Inhibition Of Leaf Respiration In Field-Grown Eucalyptus Saligna In Whole-Tree Chambers Under Elevated Atmospheric Co2 And Summer Drought", "description": "SUMMARYWe investigated whether the degree of light inhibition of leaf respiration (R) differs among large Eucalyptus saligna grown in whole\uffe2\uff80\uff90tree chambers and exposed to present and future atmospheric [CO2] and summer drought. Associated with month\uffe2\uff80\uff90to\uffe2\uff80\uff90month changes in temperature were concomitant changes in R in the light (Rlight) and darkness (Rdark), with both processes being more temperature dependent in well\uffe2\uff80\uff90watered trees than under drought. Overall rates of Rlight and Rdark were not significantly affected by [CO2]. By contrast, overall rates of Rdark (averaged across both [CO2]) were ca. 25% lower under drought than in well\uffe2\uff80\uff90watered trees. During summer, the degree of light inhibition of leaf R was greater in droughted (ca. 80% inhibition) than well\uffe2\uff80\uff90watered trees (ca. 50% inhibition). Notwithstanding these treatment differences, an overall positive relationship was observed between Rlight and Rdark when data from all months/treatments were combined (R2\uffe2\uff80\uff83=\uffe2\uff80\uff830.8). Variations in Rlight were also positively correlated with rates of Rubisco activity and nitrogen concentration. Light inhibition resulted in a marked decrease in the proportion of light\uffe2\uff80\uff90saturated photosynthesis respired (i.e. reduced R/Asat). Collectively, these results highlight the need to account for light inhibition when assessing impacts of global change drivers on the carbon economy of tree canopies.
", "keywords": ["0301 basic medicine", "0106 biological sciences", "Light", "01 natural sciences", "nitrogen", "ribulosebisphosphate carboxylase", "Trees", "Keywords: carbon", "leaf respiration", "Photosynthesis", "Eucalyptus", "concentration (composition)", "droughts", "drought stress", "Photorespiration", "Temperature", "Rlight", "Darkness", "Photochemical Processes", "6. Clean water", "inhibition", "Droughts", "assessment method", "Elevated CO2", "Seasons", "photorespiration", "Nitrogen", "light effect", "Ribulose-Bisphosphate Carboxylase", "water", "Cell Respiration", "evergreen tree", "03 medical and health sciences", "Stress", " Physiological", "XXXXXX - Unknown", "temp Carbon balance", "global change", "580", "photosynthesis", "Drought", "Australia", "carbon dioxide", "temperature", "Water", "Plant Transpiration", "15. Life on land", "Carbon Dioxide", "Carbon", "Plant Leaves", "13. Climate action", "Plant Stomata", "Leaf respiration", "respiration"]}, "links": [{"href": "https://openresearch-repository.anu.edu.au/bitstream/1885/51083/5/Light_inhibition_of_leaf_respiration_in_field-grown.pdf.jpg"}, {"href": "https://openresearch-repository.anu.edu.au/bitstream/1885/51083/7/01_Crous_Light_inhibition_of_leaf_2012.pdf.jpg"}, {"href": "https://doi.org/10.1111/j.1365-3040.2011.02465.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%2C%20Cell%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-3040.2011.02465.x", "name": "item", "description": "10.1111/j.1365-3040.2011.02465.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-3040.2011.02465.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-12-14T00:00:00Z"}}, {"id": "10.1111/j.1469-8137.2007.02204.x", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-04-04T16:19:16Z", "type": "Journal Article", "created": "2007-09-08", "title": "Fertilization Effects On Fineroot Biomass, Rhizosphere Microbes And Respiratory Fluxes In Hardwood Forest Soils", "description": "Fertilizer-induced reductions in CO(2) flux from soil ((F)CO(2)) in forests have previously been attributed to decreased carbon allocation to roots, and decreased decomposition as a result of nitrogen suppression of fungal activity. Here, we present evidence that decreased microbial respiration in the rhizosphere may also contribute to (F)CO(2) reductions in fertilized forest soils. Fertilization reduced (F)CO(2) by 16-19% in 65-yr-old plantations of northern red oak (Quercus rubra) and sugar maple (Acer saccharum), and in a natural 85-yr-old yellow birch (Betula allegheniensis) stand. In oak plots, fertilization had no effects on fine root biomass but reduced mycorrhizal colonization by 18% and microbial respiration by 43%. In maple plots, fertilization reduced root biomass, mycorrhizal colonization and microbial respiration by 22, 16 and 46%, respectively. In birch plots, fertilization reduced microbial respiration by 36%, but had variable effects on root biomass and mycorrhizal colonization. In plots of all three species, fertilization effects on microbial respiration were greater in rhizosphere than in bulk soil, possibly as a result of decreased rhizosphere carbon flux from these species in fertile soils. Because rhizosphere processes may influence nutrient availability and carbon storage in forest ecosystems, future research is needed to better quantify rhizo-microbial contributions to (F)CO(2).", "keywords": ["2. Zero hunger", "Cell Respiration", "Acer", "Forestry", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "Plant Roots", "Carbon", "Trees", "Quercus", "Soil", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Fertilizers", "Betula", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1111/j.1469-8137.2007.02204.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1469-8137.2007.02204.x", "name": "item", "description": "10.1111/j.1469-8137.2007.02204.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1469-8137.2007.02204.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-09-05T00:00:00Z"}}, {"id": "10.1111/j.1469-8137.2010.03319.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-04T16:19:17Z", "type": "Journal Article", "created": "2010-06-11", "title": "Shifts In Plant Respiration And Carbon Use Efficiency At A Large-Scale Drought Experiment In The Eastern Amazon", "description": "Featured paper: See Editorial p553
", "keywords": ["0106 biological sciences", "Time Factors", "550", "plant community", "carbon fixation", "Carbon use efficiency", "Cell Respiration", "Amazon rain forest", "drought", "Gross primary productivity", "01 natural sciences", "experimental study", "metabolism Amazon rain forest", "Trees", "Soil", "cell respiration", "Keywords: carbon", "partitioning", "Ecosystem", "ecosystem", "Carbon cycling", "Drought", "Bacteria", "article", "carbon dioxide", "net primary production", "Carbon Dioxide", "15. Life on land", "bacterium", "Carbon", "6. Clean water", "Net primary productivity", "Droughts", "carbon flux", "Carbon dioxide", "rainforest", "respiration", "Partitioning", "Brazil"]}, "links": [{"href": "https://openresearch-repository.anu.edu.au/bitstream/1885/79387/5/f5625xPUB78382010.pdf.jpg"}, {"href": "https://openresearch-repository.anu.edu.au/bitstream/1885/79387/7/01_Metcalfe_Shifts_in_plant_respiration_2010.pdf.jpg"}, {"href": "https://doi.org/10.1111/j.1469-8137.2010.03319.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1469-8137.2010.03319.x", "name": "item", "description": "10.1111/j.1469-8137.2010.03319.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1469-8137.2010.03319.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-07-19T00:00:00Z"}}, {"id": "10.1111/nph.20401", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-04T16:19:25Z", "type": "Journal Article", "created": "2025-01-17", "title": "Insights into the subdaily variations in methane, nitrous oxide and carbon dioxide fluxes from upland tropical tree stems", "description": "Summary
Recent studies have shown that stem fluxes, although highly variable among trees, can alter the strength of the methane (CH4) sink or nitrous oxide (N2O) source in some forests, but the patterns and magnitudes of these fluxes remain unclear. This study investigated the drivers of subdaily and seasonal variations in stem and soil CH4, N2O and carbon dioxide (CO2) fluxes.
CH4, N2O and CO2 fluxes were measured continuously for 19\uffe2\uff80\uff89months in individual stems of two tree species, Eperua falcata (Aubl.) and Lecythis poiteaui (O. Berg), and surrounding soils using an automated chamber system in an upland tropical forest. Subdaily variations in these fluxes were related to environmental and stem physiological (sap flow and stem diameter variations) measurements under contrasting soil water conditions.
The results showed that physiological and climatic drivers only partially explained the subdaily flux variations. Stem CH4 and CO2 emissions and N2O uptake varied with soil water content, time of day and between individuals. Stem fluxes decoupled from soil fluxes.
Our study contributes to understanding the regulation of stem greenhouse gas fluxes. It suggests that additional variables (e.g. internal gas concentrations, wood\uffe2\uff80\uff90colonising microorganisms, wood density and anatomy) may account for the remaining unexplained variability in stem fluxes, highlighting the need for further studies.
We measured leaf photosynthetic traits in shade\uffe2\uff80\uff90grown seedlings of four tree species native to northern Japan, raised under an elevated CO2 condition, to investigate the effects of elevated CO2 on shade tolerance of deciduous broadleaf tree species with different successional traits. We considered Betula platyphylla var. japonica and Betula maximowicziana as pioneer species, Quercus mongolica var. crispula as a mid\uffe2\uff80\uff90successional species, and Acer mono as a climax species. The plants were grown under shade conditions (10% of full sunlight) in a CO2\uffe2\uff80\uff90regulated phytotron. Light compensation points (LCPs) decreased in all tree species when grown under elevated CO2 (720\uffc2\uffa0\uffce\uffbcmol\uffc2\uffb7mol\uffe2\uff88\uff921), which were accompanied by higher apparent quantum yields but no photosynthetic down\uffe2\uff80\uff90regulation. LCPs in Q.\uffc2\uffa0mongolica and A.\uffc2\uffa0mono grown under elevated CO2 were lower than those in the two pioneer birch species. The LCP in Q.\uffc2\uffa0mongolica seedlings was not different from that of A.\uffc2\uffa0mono in each CO2 treatment. However, lower dark respiration rates were observed in A.\uffc2\uffa0mono than in Q.\uffc2\uffa0mongolica, suggesting higher shade tolerance in A.\uffc2\uffa0mono as a climax species in relation to carbon loss at night. Thus, elevated CO2 may have enhanced shade tolerance by lowering LCPs in all species, but the ranking of shade tolerance related to successional traits did not change among species under elevated CO2, i.e. the highest shade tolerance was observed in the climax species (A.\uffc2\uffa0mono), followed by a gap\uffe2\uff80\uff90dependent species (Q.\uffc2\uffa0mongolica), while lower shade tolerance was observed in the pioneer species (B.\uffc2\uffa0platyphylla and B.\uffc2\uffa0maximowicziana).", "keywords": ["0106 biological sciences", "CO2 enrichment", "photosynthesis", "Acclimatization", "Acer", "Carbon Dioxide", "15. Life on land", "650", "01 natural sciences", "Carbon", "Apparent quantum yield", "Trees", "shade tolerance", "Plant Leaves", "Quercus", "Phenotype", "Japan", "Seedlings", "Sunlight", "Photosynthesis", "dark respiration", "Betula"]}, "links": [{"href": "https://doi.org/10.1111/plb.12400"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/plb.12400", "name": "item", "description": "10.1111/plb.12400", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/plb.12400"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-10-11T00:00:00Z"}}, {"id": "10.1111/rec.13562", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-04-04T16:19:26Z", "type": "Journal Article", "created": "2021-09-18", "title": "Restoration of a Lake Ontario\u2010connected fen through invasive Typha removal", "description": "Lake\uffe2\uff80\uff90level regulation that began in 1960 eliminated large fluctuations of Lake Ontario water levels, altering coastal wetland plant communities. More than a half century later, the altered hydroperiod supports dense, monotypic stands of invasive cattail (Typha angustifolia and Typha\uffc2\uffa0\uffc3\uff97 glauca), which have diminished overall plant community diversity. As a result, Lake Ontario coastal wetlands are less capable of providing many of their traditional ecological functions. One such wetland is Buttonwood Fen, a floating, lake\uffe2\uff80\uff90connected peatland on Lake Ontario's southern shore near Rochester, NY. We implemented cattail\uffe2\uff80\uff90control measures from 2016 to 2018 with the goal of decreasing live and dead cattail biomass and increasing cover of native fen taxa. Site manipulation included removal of dead cattail biomass, cutting new cattail growth when rhizome carbohydrate reserves were at their lowest, and hand\uffe2\uff80\uff90wicking regrowth with herbicide in early fall. Results showed a decrease in live cattail stem density and cover and dead biomass cover, as well as an increase in cover of fen taxa. Although not a replicated study, our results suggest that removing dead cattail biomass and targeted treatment of live cattail stems via cutting and hand\uffe2\uff80\uff90wicking with glyphosate can reduce cattail and improve site quality.Disturbances alter ecosystem carbon dynamics, often by reducing carbon uptake and stocks. We compared the impact of two types of disturbances that represent the most likely future conditions of currently dense ponderosa pine forests of the southwestern United States: (1) high\uffe2\uff80\uff90intensity fire and (2) thinning, designed to reduce fire intensity. High\uffe2\uff80\uff90severity fire had a larger impact on ecosystem carbon uptake and storage than thinning. Total ecosystem carbon was 42% lower at the intensely burned site, 10 years after burning, than at the undisturbed site. Eddy covariance measurements over two years showed that the burned site was a net annual source of carbon to the atmosphere whereas the undisturbed site was a sink. Net primary production (NPP), evapotranspiration (ET), and water use efficiency were lower at the burned site than at the undisturbed site. In contrast, thinning decreased total ecosystem carbon by 18%, and changed the site from a carbon sink to a source in the first post\uffe2\uff80\uff90treatment year. Thinning also decreased ET, reduced the limitation of drought on carbon uptake during summer, and did not change water use efficiency. Both disturbances reduced ecosystem carbon uptake by decreasing gross primary production (55% by burning, 30% by thinning) more than total ecosystem respiration (TER; 33\uffe2\uff80\uff9347% by burning, 18% by thinning), and increased the contribution of soil carbon dioxide efflux to TER. The relationship between TER and temperature was not affected by either disturbance. Efforts to accurately estimate regional carbon budgets should consider impacts on carbon dynamics of both large disturbances, such as high\uffe2\uff80\uff90intensity fire, and the partial disturbance of thinning that is often used to prevent intense burning. Our results show that thinned forests of ponderosa pine in the southwestern United States are a desirable alternative to intensively burned forests to maintain carbon stocks and primary production.
", "keywords": ["Biometry", "QH301 Biology", "Cell Respiration", "Arizona", "Water", "Forestry", "Plant Transpiration", "Carbon Dioxide", "15. Life on land", "01 natural sciences", "Carbon", "Fires", "6. Clean water", "Pinus ponderosa", "Soil", "13. Climate action", "Biomass", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1890/09-0934.1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecological%20Applications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1890/09-0934.1", "name": "item", "description": "10.1890/09-0934.1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1890/09-0934.1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-04-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?facets=true&soil_biological_properties=respiration&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?facets=true&soil_biological_properties=respiration&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?facets=true&soil_biological_properties=respiration&", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?facets=true&soil_biological_properties=respiration&offset=50", "hreflang": "en-US"}], "numberMatched": 82, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-04-04T17:37:38.398794Z"}