{"type": "FeatureCollection", "features": [{"id": "10.1093/pcp/pcae113", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:06Z", "type": "Journal Article", "created": "2024-11-06", "title": "Population Genomics Reveals Demographic History and Climate Adaptation in Japanese Arabidopsis halleri", "description": "Abstract                <p>Climate oscillations in the Quaternary forced species to major latitudinal or altitudinal range shifts. It has been suggested that adaptation concomitant with range shifts plays key roles in species responses during climate oscillations, but the role of selection for local adaptation to climatic changes remains largely unexplored. Here, we investigated population structure, demographic history and signatures of climate-driven selection based on genome-wide polymorphism data of 141 Japanese Arabidopsis halleri individuals, with European ones as outgroups. Coalescent-based analyses suggested a genetic differentiation between Japanese subpopulations since the Last Glacial Period (LGP), which would have contributed to shaping the current pattern of population structure. Population demographic analysis revealed the population size fluctuations in the LGP, which were particularly prominent since the subpopulations started to diverge (\uffe2\uff88\uffbc50, 000 years ago). The ecological niche modeling predicted the geographic or distribution range shifts from southern coastal regions to northern coastal and mountainous areas, possibly in association with the population size fluctuations. Through genome-wide association analyses of bioclimatic variables and selection scans, we investigated whether climate-associated loci are enriched in the extreme tails of selection scans, and demonstrated the prevailing signatures of selection, particularly toward a warmer climate in southern subpopulations and a drier environment in northern subpopulations, which may have taken place during or after the LGP. Our study highlights the importance of integrating climate associations, selection scans and population demographic analyses for identifying genomic signatures of population-specific adaptation, which would also help us predict the evolutionary responses to future climate changes.</p", "keywords": ["[SDV] Life Sciences [q-bio]", "Genetics", " Population", "Special Issue - Regular Paper", "Japan", "Climate", "Climate Change", "Acclimatization", "Arabidopsis", "Selection", " Genetic", "Adaptation", " Physiological", "Genome", " Plant", "Genome-Wide Association Study"]}, "links": [{"href": "https://academic.oup.com/pcp/advance-article-pdf/doi/10.1093/pcp/pcae113/60430271/pcae113.pdf"}, {"href": "https://doi.org/10.1093/pcp/pcae113"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20And%20Cell%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/pcp/pcae113", "name": "item", "description": "10.1093/pcp/pcae113", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/pcp/pcae113"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-09-30T00:00:00Z"}}, {"id": "10.1093/treephys/27.11.1627", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:07Z", "type": "Journal Article", "created": "2011-11-18", "title": "Fine Root Morphological Adaptations In Scots Pine, Norway Spruce And Silver Birch Along A Latitudinal Gradient In Boreal Forests", "description": "Variability in short root morphology of the three main tree species of Europe's boreal forest (Norway spruce (Picea abies L. Karst.), Scots pine (Pinus sylvestris L.) and silver birch (Betula pendula Roth)) was investigated in four stands along a latitudinal gradient from northern Finland to southern Estonia. Silver birch and Scots pine were present in three stands and Norway spruce was present in all stands. For three fertile Norway spruce stands, fine root biomass and number of root tips per stand area or unit basal area were assessed from north to south. Principal component analysis indicated that short root morphology was significantly affected by tree species and site, which together explained 34.7% of the total variability. The range of variation in mean specific root area (SRA) was 51-74, 60-70 and 84-124 m(2) kg(-1) for Norway spruce, Scots pine and silver birch, respectively, and the corresponding ranges for specific root length were 37-47, 40-48 and 87-97 m g(-1). The range of variation in root tissue density of Norway spruce, Scots pine and silver birch was 113-182, 127-158 and 81-156 kg m(-3), respectively. Sensitivity of short root morphology to site conditions decreased in the order: Norway spruce > silver birch > Scots pine. Short root SRA increased with site fertility in all species. In Norway spruce, fine root biomass and number of root tips per m(2) decreased from north to south. The differences in morphological parameters among sites were significant but smaller than the site differences in fine root biomass and number of root tips.", "keywords": ["580", "Estonia", "0106 biological sciences", "570", "sopeutumisstrategiat", "Picea abies", "Pinus sylvestris", "04 agricultural and veterinary sciences", "15. Life on land", "Adaptation", " Physiological", "Plant Roots", "01 natural sciences", "juurten pituus", "Species Specificity", "hienojuuribiomassa", "Betula pendula", "0401 agriculture", " forestry", " and fisheries", "Picea", "Weather", "Betula", "Ecosystem", "Finland"], "contacts": [{"organization": "Ostonen, I., L\u00f5hmus, K., Helmisaari, H.-S., Truu, J., Meel, S.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1093/treephys/27.11.1627"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Tree%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/treephys/27.11.1627", "name": "item", "description": "10.1093/treephys/27.11.1627", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/treephys/27.11.1627"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-11-01T00:00:00Z"}}, {"id": "10.1093/treephys/tpp079", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:19:07Z", "type": "Journal Article", "created": "2009-09-30", "title": "Low Moisture Availability Inhibits The Enhancing Effect Of Increased Soil Temperature On Net Photosynthesis Of White Birch (Betula Papyrifera) Seedlings Grown Under Ambient And Elevated Carbon Dioxide Concentrations", "description": "White birch (Betula papyrifera Marsh.) seedlings were grown under two carbon dioxide concentrations (ambient: 360 micromol mol(-1) and elevated: 720 micromol mol(-1)), three soil temperatures (5, 15 and 25 degrees C initially, increased to 7, 17 and 27 degrees C, respectively, 1 month later) and three moisture regimes (low: 30-40%; intermediate: 45-55% and high: 60-70% field water capacity) in greenhouses. In situ gas exchange and chlorophyll fluorescence were measured after 2 months of treatments. Net photosynthetic rate (A(n)) of seedlings grown under the intermediate and high moisture regimes increased from low to intermediate T(soil) and then decreased to high T(soil). There were no significant differences between the low and high T(soil), with the exception that A(n) was significantly higher under high than low T(soil) at the high moisture regime. No significant T(soil) effect on A(n) was observed at the low moisture regime. The intermediate T(soil) increased stomatal conductance (g(s)) only at intermediate and high but not at low moisture regime, whereas there were no significant differences between the low and high T(soil) treatments. Furthermore, the difference in g(s) between the intermediate and high T(soil) at high moisture regime was not statistically significant. The low moisture regime significantly reduced the internal to ambient CO2 concentration ratio at all T(soil). There were no significant individual or interactive effects of treatment on maximum carboxylation rate of Rubisco, light-saturated electron transport rate, triose phosphate utilization or potential photochemical efficiency of photosystem II. The results of this study suggest that soil moisture condition should be taken into account when predicting the responses of white birch to soil warming.", "keywords": ["0106 biological sciences", "0301 basic medicine", "Ribulose-Bisphosphate Carboxylase", "Temperature", "Water", "Carbon Dioxide", "15. Life on land", "01 natural sciences", "Soil", "03 medical and health sciences", "Seedlings", "Stress", " Physiological", "Photosynthesis", "Betula"], "contacts": [{"organization": "Qing-Lai Dang, Titus Fondo Ambebe,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1093/treephys/tpp079"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Tree%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/treephys/tpp079", "name": "item", "description": "10.1093/treephys/tpp079", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/treephys/tpp079"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-09-28T00:00:00Z"}}, {"id": "10.1093/treephys/tps029", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:08Z", "type": "Journal Article", "created": "2012-04-13", "title": "Physiological Response To Drought In Radiata Pine: Phytohormone Implication At Leaf Level", "description": "Pinus radiata D. Don is one of the most abundant species in the north of Spain. Knowledge of drought response mechanisms is essential to guarantee plantation survival under reduced water supply as predicted in the future. Tolerance mechanisms are being studied in breeding programs, because information on such mechanisms can be used for genotype selection. In this paper, we analyze the changes of leaf water potential, hydraulic conductance (K(leaf)), stomatal conductance and phytohormones under drought in P. radiata breeds (O1, O2, O3, O4, O5 and O6) from different climatology areas, hypothesizing that they could show variable drought tolerance. As a primary signal, drought decreased cytokinin (zeatin and zeatin riboside-Z\u2009+\u2009ZR) levels in needles parallel to K(leaf) and gas exchange. When Z\u2009+\u2009ZR decreased by 65%, indole-3-acetic acid (IAA) and abscisic acid (ABA) accumulation started as a second signal and increments were higher for IAA than for ABA. When plants decreased by 80%, Z\u2009+\u2009ZR and K(leaf) doubled their ABA and IAA levels, the photosystem II yield decreased and the electrolyte leakage increased. At the end of the drought period, less tolerant breeds increased IAA over 10-fold compared with controls. External damage also induced jasmonic acid accumulation in all breeds except in O5 (P. radiata var. radiata\u2009\u00d7\u2009var. cedrosensis), which accumulated salicylic acid as a defense mechanism. After rewatering, only the most tolerant plants recovered their K(leaf,) perhaps due to an IAA decrease and 1-aminocyclopropane-1-carboxylic acid maintenance. From all phytohormones, IAA was the most representative 'water deficit signal' in P. radiata.", "keywords": ["0301 basic medicine", "2. Zero hunger", "Genotype", "Indoleacetic Acids", "Climate", "Amino Acids", " Cyclic", "Photosystem II Protein Complex", "Cyclopentanes", "Breeding", "15. Life on land", "Pinus", "Adaptation", " Physiological", "6. Clean water", "Droughts", "Plant Leaves", "Electrolytes", "Isopentenyladenosine", "03 medical and health sciences", "Plant Growth Regulators", "Plant Stomata", "Oxylipins", "Photosynthesis", "Salicylic Acid", "Abscisic Acid", "Signal Transduction"]}, "links": [{"href": "https://doi.org/10.1093/treephys/tps029"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Tree%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/treephys/tps029", "name": "item", "description": "10.1093/treephys/tps029", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/treephys/tps029"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-04-01T00:00:00Z"}}, {"id": "10.1093/treephys/tps133", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:19:08Z", "type": "Journal Article", "created": "2013-02-01", "title": "Nitrogen Nutrition And Drought Hardening Exert Opposite Effects On The Stress Tolerance Of Pinus Pinea L. Seedlings", "description": "Functional attributes determine the survival and growth of planted seedlings in reforestation projects. Nitrogen (N) and water are important resources in the cultivation of forest species, which have a strong effect on plant functional traits. We analyzed the influence of N nutrition on drought acclimation of Pinus pinea L. seedlings. Specifically, we addressed if high N fertilization reduces drought and frost tolerance of seedlings and whether drought hardening reverses the effect of high N fertilization on stress tolerance. Seedlings were grown under two N fertilization regimes (6 and 100 mg N per plant) and subjected to three drought-hardening levels (well-watered, moderate and strong hardening). Water relations, gas exchange, frost damage, N concentration and growth at the end of the drought-hardening period, and survival and growth of seedlings under controlled xeric and mesic outplanting conditions were measured. Relative to low-N plants, high-N plants were larger, had higher stomatal conductance (27%), residual transpiration (11%) and new root growth capacity and closed stomata at higher water potential. However, high N fertilization also increased frost damage (24%) and decreased plasmalemma stability to dehydration (9%). Drought hardening reversed to a great extent the reduction in stress tolerance caused by high N fertilization as it decreased frost damage, stomatal conductance and residual transpiration by 21, 31 and 24%, respectively, and increased plasmalemma stability to dehydration (8%). Drought hardening increased tissue non-structural carbohydrates and N concentration, especially in high-fertilized plants. Frost damage was positively related to the stability of plasmalemma to dehydration (r\u2009=\u20090.92) and both traits were negatively related to the concentration of reducing soluble sugars. No differences existed between moderate and strong drought-hardening treatments. Neither N nutrition nor drought hardening had any clear effect on seedling performance under xeric outplanting conditions. However, fertilization increased growth under mesic conditions, whereas drought hardening decreased growth. We conclude that drought hardening and N fertilization applied under typical container nursery operational conditions exert opposite effects on the physiological stress tolerance of P. pinea seedlings. While drought hardening increases overall stress tolerance, N nutrition reduces it and yet has no effect on the drought acclimation capacity of seedlings.", "keywords": ["0106 biological sciences", "2. Zero hunger", "Nitrogen", "Acclimatization", "Water", "Plant Transpiration", "15. Life on land", "Pinus", "Plant Roots", "01 natural sciences", "6. Clean water", "Droughts", "Trees", "Cold Temperature", "Plant Leaves", "Seedlings", "Stress", " Physiological", "Plant Stomata", "Photosynthesis", "Fertilizers", "Plant Shoots"]}, "links": [{"href": "https://doi.org/10.1093/treephys/tps133"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Tree%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/treephys/tps133", "name": "item", "description": "10.1093/treephys/tps133", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/treephys/tps133"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-01-30T00:00:00Z"}}, {"id": "10.1093/treephys/tpt019", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:08Z", "type": "Journal Article", "created": "2013-03-23", "title": "Synergistic, Additive And Antagonistic Impacts Of Drought And Herbivory On Pinus Sylvestris: Leaf, Tissue And Whole-Plant Responses And Recovery", "description": "Forests typically experience a mix of anthropogenic, natural and climate-induced stressors of different intensities, creating a mosaic of stressor combinations across the landscape. When multiple stressors co-occur, their combined impact on plant growth is often greater than expected based on single-factor studies (i.e., synergistic), potentially causing catastrophic dysfunction of physiological processes from an otherwise recoverable situation. Drought and herbivory are two stressors that commonly co-occur in forested ecosystems, and have the potential to 'overlap' in their impacts on various plant traits and processes. However, the combined impacts from these two stressors may not be predictable based on additive models from single-stressor studies. Moreover, the impacts and subsequent recovery may be strongly influenced by the relative intensities of each stressor. Here, we applied drought stress and simulated bark-feeding herbivory at three levels of intensity (control, moderate and severe) in a full factorial design on young Pinus sylvestris L. seedlings. We assessed if the combined effects from two stressors were additive (responses were equal to the sum of the single-factor effects), synergistic (greater than expected) or antagonistic (less than expected) on a suite of morphological and physiological traits at the leaf-, tissue- and whole-plant level. We additionally investigated whether recovery from herbivory was dependent on relief from drought. The two stressors had synergistic impacts on specific leaf area and water-use efficiency, additive effects on height and root-to-shoot ratios, but antagonistic effects on photosynthesis, conductance and, most notably, on root, shoot and whole-plant biomass. Nevertheless, the magnitude and direction of the combined impacts were often dependent on the relative intensities of each stressor, leading to many additive or synergistic responses from specific stressor combinations. Also, seedling recovery was far more dependent on the previous year's drought compared with the previous year's herbivory, demonstrating the influence of one stressor over another during recovery. Our study reveals for the first time, the importance of not only the presence or absence of drought and herbivory stressors, but also shows that their relative intensities are critical in determining the direction and magnitude of their impacts on establishing seedlings.", "keywords": ["0106 biological sciences", "Water", "Pinus sylvestris", "Plant Transpiration", "15. Life on land", "Plant Roots", "01 natural sciences", "6. Clean water", "Droughts", "Trees", "Plant Leaves", "Seedlings", "Stress", " Physiological", "Biomass", "Herbivory", "Photosynthesis", "Ecosystem", "Plant Shoots"]}, "links": [{"href": "https://doi.org/10.1093/treephys/tpt019"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Tree%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/treephys/tpt019", "name": "item", "description": "10.1093/treephys/tpt019", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/treephys/tpt019"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-03-21T00:00:00Z"}}, {"id": "10.1098/rstb.2018.0243", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:11Z", "type": "Journal Article", "created": "2019-06-03", "title": "Convergent evolution inArabidopsis halleriandArabidopsis arenosaon calamine metalliferous soils", "description": "<p>It is a plausible hypothesis that parallel adaptation events to the same environmental challenge should result in genetic changes of similar or identical effects, depending on the underlying fitness landscapes. However, systematic testing of this is scarce. Here we examine this hypothesis in two closely related plant species,Arabidopsis halleriandArabidopsis arenosa, which co-occur at two calamine metalliferous (M) sites harbouring toxic levels of the heavy metals zinc and cadmium. We conduct individual genome resequencing alongside soil elemental analysis for 64 plants from eight populations on M and non-metalliferous (NM) soils, and identify genomic footprints of selection and local adaptation. Selective sweep and environmental association analyses indicate a modest degree of gene as well as functional network convergence, whereby the proximal molecular factors mediating this convergence mostly differ between site pairs and species. Notably, we observe repeated selection on identical single nucleotide polymorphisms in severalA. hallerigenes at two independently colonized M sites. Our data suggest that species-specific metal handling and other biological features could explain a low degree of convergence between species. The parallel establishment of plant populations on calamine M soils involves convergent evolution, which will probably be more pervasive across sites purposely chosen for maximal similarity in soil composition.</p><p>This article is part of the theme issue \uffe2\uff80\uff98Convergent evolution in the genomics era: new insights and directions\uffe2\uff80\uff99.</p", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Part I: Population Genomics and Convergent Evolution within Species", "Arabidopsis", "selection", "adaptation", "15. Life on land", "Convergence; adaptation; evolution; selective sweep; selection", "Adaptation", " Physiological", "Biological Evolution", "Polymorphism", " Single Nucleotide", "selective sweep", "Soil", "Zinc", "03 medical and health sciences", "evolution", "Soil Pollutants", "Convergence", "Cadmium"]}, "links": [{"href": "https://www.biorxiv.org/content/10.1101/459362v1.full.pdf"}, {"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rstb.2018.0243"}, {"href": "https://doi.org/10.1098/rstb.2018.0243"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Philosophical%20Transactions%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rstb.2018.0243", "name": "item", "description": "10.1098/rstb.2018.0243", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rstb.2018.0243"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-11-03T00:00:00Z"}}, {"id": "10.1101/117887", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:11Z", "type": "Journal Article", "created": "2017-03-19", "title": "Bacterial physiological adaptations to contrasting edaphic conditions identified using landscape scale metagenomics", "description": "Abstract<p>Environmental factors relating to soil pH are widely known to be important in structuring soil bacterial communities, yet the relationship between taxonomic community composition and functional diversity remains to be determined. Here, we analyze geographically distributed soils spanning a wide pH gradient and assess the functional gene capacity within those communities using whole genome metagenomics. Low pH soils consistently had fewer taxa (lower alpha and gamma diversity), but only marginal reductions in functional alpha diversity and equivalent functional gamma diversity. However, coherent changes in the relative abundances of annotated genes between pH classes were identified; with functional profiles clustering according to pH independent of geography. Differences in gene abundances were found to reflect survival and nutrient acquisition strategies, with organic-rich acidic soils harboring a greater abundance of cation efflux pumps, C and N direct fixation systems and fermentation pathways indicative of anaerobiosis. Conversely, high pH soils possessed more direct transporter-mediated mechanisms for organic C and N substrate acquisition. These findings show that bacterial functional versatility may not be constrained by taxonomy, and we further identify the range of physiological adaptations required to exist in soils of varying nutrient availability and edaphic conditions.</p", "keywords": ["Q Science", "0301 basic medicine", "330", "Supplementary Data", "ecophysiology", "Ecophysiology", "NE/E006353/1", "Bacterial Physiological Phenomena", "Microbiology", "Soil", "03 medical and health sciences", "Virology", "European Commission", "Ecosystem", "Phylogeny", "Soil Microbiology", "2. Zero hunger", "655240", "metagenomics", "0303 health sciences", "Bacteria", "Natural Environment Research Council (NERC)", "Q", "NE/M017125/1", "Biodiversity", "Hydrogen-Ion Concentration", "15. Life on land", "Adaptation", " Physiological", "soil microbiology", "QR1-502", "United Kingdom", "3. Good health", "Soil microbiology", "Metagenomics", "Genome", " Bacterial", "Research Article"]}, "links": [{"href": "https://www.biorxiv.org/content/10.1101/117887v1.full.pdf"}, {"href": "https://journals.asm.org/doi/pdf/10.1128/mBio.00799-17"}, {"href": "https://doi.org/10.1101/117887"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/mBio", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/117887", "name": "item", "description": "10.1101/117887", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/117887"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-03-18T00:00:00Z"}}, {"id": "10.1101/2021.03.18.435447", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:11Z", "type": "Journal Article", "created": "2021-03-19", "title": "Predicting tomato field-yield using continuous monitoring of young tomato water status", "description": "Abstract<p>To address the challenge of predicting tomato yields in the field, we used whole-plant functional phenotyping to evaluate water relations under well-irrigated and drought conditions. The genotypes tested are known to exhibit variability in their yields in wet and dry fields. The examined lines included two lines with recessive mutations that affect carotenoid biosynthesis, zetaz2083and tangerinet3406, both isogenic to the processing tomato variety M82. The two mutant lines were reciprocally grafted onto M82, and multiple physiological characteristics were measured continuously, before, during and after drought treatment in the greenhouse. A comparative analysis of greenhouse and field yields showed that the whole-canopy stomatal conductance (gsc) in the morning and cumulative transpiration (CT) were strongly correlated with field measurements of total yield (TY:r2= 0.9 and 0.77, respectively) and plant vegetative weight (PW:r2= 0.6 and 0.94, respectively). Furthermore, the minimum CT during drought and the rate of recovery when irrigation was resumed were both found to predict resilience.</p>", "keywords": ["Crops", " Agricultural", "0301 basic medicine", "2. Zero hunger", "Dehydration", "Genotype", "Genetic Variation", "15. Life on land", "Genes", " Plant", "Adaptation", " Physiological", "6. Clean water", "Droughts", "03 medical and health sciences", "Phenotype", "Solanum lycopersicum", "Gene Expression Regulation", " Plant", "Mutation", "Plant Physiological Phenomena", "Forecasting"]}, "links": [{"href": "https://doi.org/10.1101/2021.03.18.435447"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/2021.03.18.435447", "name": "item", "description": "10.1101/2021.03.18.435447", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/2021.03.18.435447"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-19T00:00:00Z"}}, {"id": "10.1104/pp.19.01464", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:14Z", "type": "Journal Article", "created": "2020-03-04", "title": "How Plants Sense and Respond to Stressful Environments", "description": "Plants are exposed to an ever-changing environment to which they have to adjust accordingly. Their response is tightly regulated by complex signaling pathways that all start with stimulus perception. Here, we give an overview of the latest developments in the perception of various abiotic stresses, including drought, salinity, flooding, and temperature stress. We discuss whether proposed perception mechanisms are true sensors, which is well established for some abiotic factors but not yet fully elucidated for others. In addition, we review the downstream cellular responses, many of which are shared by various stresses but result in stress-specific physiological and developmental output. New sensing mechanisms have been identified, including heat sensing by the photoreceptor phytochrome B, salt sensing by glycosylinositol phosphorylceramide sphingolipids, and drought sensing by the specific calcium influx channel OSCA1. The simultaneous occurrence of multiple stress conditions shows characteristic downstream signaling signatures that were previously considered general signaling responses. The integration of sensing of multiple stress conditions and subsequent signaling responses is a promising venue for future research to improve the understanding of plant abiotic stress perception.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Stress", " Physiological", "Life Science", "Calcium", "Environment", "Plants", "15. Life on land", "Reactive Oxygen Species", "Signal Transduction"]}, "links": [{"href": "https://doi.org/10.1104/pp.19.01464"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1104/pp.19.01464", "name": "item", "description": "10.1104/pp.19.01464", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1104/pp.19.01464"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-03-04T00:00:00Z"}}, {"id": "10.1111/ele.12767", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:24Z", "type": "Journal Article", "created": "2017-03-29", "title": "Influence of multiple global change drivers on terrestrial carbon storage: additive effects are common", "description": "Abstract<p>The interactive effects of multiple global change drivers on terrestrial carbon (C) storage remain poorly understood. Here, we synthesise data from 633 published studies to show how the interactive effects of multiple drivers are generally additive (i.e. not differing from the sum of their individual effects) rather than synergistic or antagonistic. We further show that (1) elevatedCO2, warming, N addition, P addition and increased rainfall, all exerted positive individual effects on plant C pools at both single\uffe2\uff80\uff90plant and plant\uffe2\uff80\uff90community levels; (2) plant C pool responses to individual or combined effects of multiple drivers are seldom scale\uffe2\uff80\uff90dependent (i.e. not differing from single\uffe2\uff80\uff90plant to plant\uffe2\uff80\uff90community levels) and (3) soil and microbial biomass C pools are significantly less sensitive than plant C pools to individual or combined effects. We provide a quantitative basis for integrating additive effects of multiple global change drivers into future assessments of the C storage ability of terrestrial ecosystems.</p>", "keywords": ["0106 biological sciences", "Carbon Sequestration", "Climate Change", "04 agricultural and veterinary sciences", "Models", " Theoretical", "15. Life on land", "01 natural sciences", "Soil", "Theoretical", "Models", "13. Climate action", "Journal Article", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Ecosystem", "Plant Physiological Phenomena", "Soil Microbiology", "Meta-Analysis"]}, "links": [{"href": "https://doi.org/10.1111/ele.12767"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/ele.12767", "name": "item", "description": "10.1111/ele.12767", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/ele.12767"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-03-28T00:00:00Z"}}, {"id": "10.1111/ele.14530", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:24Z", "type": "Journal Article", "created": "2024-10-16", "title": "Microbial Evolution Drives Adaptation of Substrate Degradation on Decadal to Centennial Time Scales Relevant to Global Change", "description": "ABSTRACT<p>Understanding microbial adaptation is crucial for predicting how soil carbon dynamics and global biogeochemical cycles will respond to climate change. This study employs the DEMENT model of microbial decomposition, along with empirical mutation and dispersal rates, to explore the roles of mutation and dispersal in the adaptation of soil microbial populations to shifts in litter chemistry, changes that are anticipated with climate\uffe2\uff80\uff90driven vegetation dynamics. Following a change in litter chemistry, mutation generally allows for a higher rate of litter decomposition than dispersal, especially when dispersal predominantly introduces genotypes already present in the population. These findings challenge the common idea that mutation rates are too low to affect ecosystem processes on ecological timescales. These results demonstrate that evolutionary processes, such as mutation, can help maintain ecosystem functioning as the climate changes.</p", "keywords": ["570", "Environmental management", "Physiological", "Climate Change", "Models", " Biological", "Ecological applications", "litter decay", "microbial evolution", "climate change dispersal litter decay microbial evolution", "Models", "Adaptation", "dispersal", "Soil Microbiology", "Ecosystem", "[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", "Evolutionary Biology", "Ecology", "Atmosphere", "[SDU.OCEAN] Sciences of the Universe [physics]/Ocean", " Atmosphere", "500", "Biological", "Biological Evolution", "Adaptation", " Physiological", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "climate change", "Ecological Applications", "Mutation", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", "environment"], "contacts": [{"organization": "Abs, Elsa, Coulette, David, Ciais, Philippe, Allison, Steven,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1111/ele.14530"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/ele.14530", "name": "item", "description": "10.1111/ele.14530", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/ele.14530"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-10-01T00:00:00Z"}}, {"id": "10.1111/gcb.14306", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:19:25Z", "type": "Journal Article", "created": "2018-05-11", "title": "Effects of climate legacies on above- and belowground community assembly", "description": "Abstract<p>The role of climatic legacies in regulating community assembly of above\uffe2\uff80\uff90 and belowground species in terrestrial ecosystems remains largely unexplored and poorly understood. Here, we report on two separate regional and continental empirical studies, including &gt;500 locations, aiming to identify the relative importance of climatic legacies (climatic anomaly over the last 20,000\uffc2\uffa0years) compared to current climates in predicting the relative abundance of ecological clusters formed by species strongly co\uffe2\uff80\uff90occurring within two independent above\uffe2\uff80\uff90 and belowground networks. Climatic legacies explained a significant portion of the variation in the current community assembly of terrestrial ecosystems (up to 15.4%) that could not be accounted for by current climate, soil properties, and management. Changes in the relative abundance of ecological clusters linked to climatic legacies (e.g., past temperature) showed the potential to indirectly alter other clusters, suggesting cascading effects. Our work illustrates the role of climatic legacies in regulating ecosystem community assembly and provides further insights into possible winner and loser community assemblies under global change scenarios.</p>", "keywords": ["0301 basic medicine", "0303 health sciences", "Climate Change", "Australia", "Fungi", "Forests", "15. Life on land", "Bacterial Physiological Phenomena", "Invertebrates", "Trees", "Soil", "03 medical and health sciences", "13. Climate action", "XXXXXX - Unknown", "Vertebrates", "Animals", "Paleoclimate", " Bacteria", " Fungi", " Plants", " Animals", " Terrestrial ecosystems", " Ecological networks.", "Soil Microbiology"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.14306"}, {"href": "https://doi.org/10.1111/gcb.14306"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.14306", "name": "item", "description": "10.1111/gcb.14306", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.14306"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-05-30T00:00:00Z"}}, {"id": "10.1111/gcb.14440", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:26Z", "type": "Journal Article", "created": "2018-09-22", "title": "Cascading effects from plants to soil microorganisms explain how plant species richness and simulated climate change affect soil multifunctionality", "description": "Abstract<p>Despite their importance, how plant communities and soil microorganisms interact to determine the capacity of ecosystems to provide multiple functions simultaneously (multifunctionality) under climate change is poorly known. We conducted a common garden experiment using grassland species to evaluate how plant functional structure and soil microbial (bacteria and protists) diversity and abundance regulate soil multifunctionality responses to joint changes in plant species richness (one, three and six species) and simulated climate change (3\uffc2\uffb0C warming and 35% rainfall reduction). The effects of species richness and climate on soil multifunctionality were indirectly driven via changes in plant functional structure and their relationships with the abundance and diversity of soil bacteria and protists. More specifically, warming selected for the larger and most productive plant species, increasing the average size within communities and leading to reductions in functional plant diversity. These changes increased the total abundance of bacteria that, in turn, increased that of protists, ultimately promoting soil multifunctionality. Our work suggests that cascading effects between plant functional traits and the abundance of multitrophic soil organisms largely regulate the response of soil multifunctionality to simulated climate change, and ultimately provides novel experimental insights into the mechanisms underlying the effects of biodiversity and climate change on ecosystem functioning.</p", "keywords": ["[SDE] Environmental Sciences", "0106 biological sciences", "570", "[SDV]Life Sciences [q-bio]", "Nutrientcycles", "Climate Change", "Edafolog\u00eda (Biolog\u00eda)", "Bacterial Physiological Phenomena", "biotic communities", "01 natural sciences", "631.4", "climatic changes", "Soil", "XXXXXX - Unknown", "Climate change", "14. Life underwater", "species richness", "bacteria", "Ecosystem", "Plant Physiological Phenomena", "Soil Microbiology", "biodiversity", "580", "2. Zero hunger", "species diversity", "Bacteria", "Protist", "2417.13 Ecolog\u00eda Vegetal", "nutrient cycles", "environmental filtering", "Biodiversity", "15. Life on land", "[SDV] Life Sciences [q-bio]", "climate change", "13. Climate action", "ecosystem functioning", "[SDE]Environmental Sciences", "Ecosystem functioning", "2511.02 Biolog\u00eda de Suelos", "protist", "Environmental filtering", "Species richness"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.14440"}, {"href": "https://doi.org/10.1111/gcb.14440"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.14440", "name": "item", "description": "10.1111/gcb.14440", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.14440"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-10-09T00:00:00Z"}}, {"id": "10.1111/nph.18873", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:50Z", "type": "Journal Article", "created": "2023-03-13", "title": "Effective root responses to salinity stress include maintained cell expansion and carbon allocation", "description": "Summary<p><p>Acclimation of root growth is vital for plants to survive salt stress. Halophytes are great examples of plants that thrive even under severe salinity, but their salt tolerance mechanisms, especially those mediated by root responses, are still largely unknown.</p><p>We compared root growth responses of the halophyteSchrenkiella parvulawith its glycophytic relative speciesArabidopsis thalianaunder salt stress and performed transcriptomic analysis ofS.\uffc2\uffa0parvularoots to identify possible gene regulatory networks underlying their physiological responses.</p><p>Schrenkiella parvularoots do not avoid salt and experience less growth inhibition under salt stress. Salt\uffe2\uff80\uff90induced abscisic acid levels were higher inS.\uffc2\uffa0parvularoots compared with Arabidopsis. Root transcriptomic analysis ofS.\uffc2\uffa0parvularevealed the induction of sugar transporters and genes regulating cell expansion and suberization under salt stress.14C\uffe2\uff80\uff90labeled carbon partitioning analyses showed thatS.\uffc2\uffa0parvulacontinued allocating carbon to roots from shoots under salt stress while carbon barely allocated to Arabidopsis roots. Further physiological investigation revealed thatS.\uffc2\uffa0parvularoots maintained root cell expansion and enhanced suberization under severe salt stress.</p><p>In summary, roots ofS.\uffc2\uffa0parvuladeploy multiple physiological and developmental adjustments under salt stress to maintain growth, providing new avenues to improve salt tolerance of plants using root\uffe2\uff80\uff90specific strategies.</p></p", "keywords": ["2. Zero hunger", "Salinity", "root growth", "halophytes", "Arabidopsis", "Salt-Tolerant Plants", "Salt Tolerance", "15. Life on land", "Plant Roots", "Carbon", "Stress", " Physiological", "Gene Expression Regulation", " Plant", "Brassicaceae", "carbon partitioning", "carbon partitioning; cell expansion; halophytes; root growth; salt stress; Schrenkiella parvula", "cell expansion", "Schrenkiella parvula", "salt stress"]}, "links": [{"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.18873"}, {"href": "https://doi.org/10.1111/nph.18873"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.18873", "name": "item", "description": "10.1111/nph.18873", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.18873"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-03-29T00:00:00Z"}}, {"id": "10.1111/tpj.15544", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:53Z", "type": "Journal Article", "created": "2021-10-20", "title": "Constitutively enhanced genome integrity maintenance and direct stress mitigation characterize transcriptome of extreme stress\u2010adapted Arabidopsis halleri", "description": "SUMMARY<p>Heavy metal\uffe2\uff80\uff90rich toxic soils and ordinary soils are both natural habitats of Arabidopsis halleri, a diploid perennial and obligate outcrosser in the sister clade of the genetic model plant Arabidopsis thaliana. The molecular divergence underlying survival in sharply contrasting environments is unknown. Here we comparatively address metal physiology and transcriptomes of A. halleri originating from the most highly heavy metal\uffe2\uff80\uff90contaminated soil in Europe, Ponte Nossa, Italy (Noss), and from non\uffe2\uff80\uff90metalliferous (NM) soils. Plants from Noss exhibit enhanced hypertolerance and attenuated accumulation of cadmium (Cd), and their transcriptomic Cd responsiveness is decreased, compared to plants of NM soil origin. Among the condition\uffe2\uff80\uff90independent transcriptome characteristics of Noss, the most highly overrepresented functional class of \uffe2\uff80\uff98meiotic cell cycle\uffe2\uff80\uff99 comprises 21 transcripts with elevated abundance in vegetative tissues, in particular Argonaute 9 (AGO9) and the synaptonemal complex transverse filament protein\uffe2\uff80\uff90encoding ZYP1a/b. Increased AGO9 transcript levels in Noss are accompanied by decreased long terminal repeat retrotransposon expression. Similar to Noss, plants from other highly metalliferous sites in Poland and Germany share elevated somatic AGO9 transcript levels in comparison to plants originating from NM soils in their respective geographic regions. Transcript levels of Iron\uffe2\uff80\uff90Regulated Transporter 1 (IRT1) are very low and transcript levels of Heavy Metal ATPase 2 (HMA2) are strongly elevated in Noss, which can account for its altered Cd handling. We conclude that in plants adapted to the most extreme abiotic stress, broadly enhanced functions comprise genes with likely roles in somatic genome integrity maintenance, accompanied by few alterations in stress\uffe2\uff80\uff90specific functional networks.</p", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Parallel evolution", "Metallophyte", "Arabidopsis", "Evolutionary adaptation", "Environment", "15. Life on land", "Adaptation", " Physiological", "Transposable element", "Meiosis", "Soil", "03 medical and health sciences", "Stress", " Physiological", "Metals", " Heavy", "Extremophile", "Soil Pollutants", "ddc:580", "Transcriptome", "Genome", " Plant", "Cadmium"]}, "links": [{"href": "https://www.biorxiv.org/content/10.1101/859249v1.full.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/tpj.15544"}, {"href": "https://doi.org/10.1111/tpj.15544"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Plant%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/tpj.15544", "name": "item", "description": "10.1111/tpj.15544", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/tpj.15544"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-11-29T00:00:00Z"}}, {"id": "10.1111/j.1438-8677.2012.00627.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:39Z", "type": "Journal Article", "created": "2012-06-05", "title": "Physiological And Biochemical Responses Ofquercus Pubescensto Air Warming And Drought On Acidic And Calcareous Soils", "description": "Abstract<p>The drought\uffe2\uff80\uff90 and thermo\uffe2\uff80\uff90tolerant Quercus pubescens, a tree species growing on both acidic and calcareous soils in the sub\uffe2\uff80\uff90Mediterranean region, was exposed to soil drought (\uffe2\uff88\uff9260% to \uffe2\uff88\uff9280% soil water content) and air warming (+1.2\uffe2\uff80\uff83\uffc2\uffb0C daytime temperature), singly and in combination. The experiment was conducted on two natural forest soils with similar texture but different pH (acidic and calcareous soils). The physiological (photosynthesis) and biochemical (antioxidant system) responses of Q.\uffc2\uffa0pubescens were investigated. On acidic soil, Q.\uffc2\uffa0pubescens had a higher reactive oxygen species (ROS) content than on calcareous soil, confirming that this species is better adapted to the latter soil type. A down\uffe2\uff80\uff90regulation of ascorbate\uffe2\uff80\uff90glutathione cycle enzymes suggests that ROS were used as signalling molecules. Air warming stimulated stomatal opening, while soil drought induced stomatal closure in the late afternoon and reduced Rubisco carboxylation efficiency. Photosynthetic performance in the combined treatment was higher than under single drought stress and similar to control and air warming. Q.\uffc2\uffa0pubescens biochemical responses depended on soil pH. On acidic soil, Q.\uffc2\uffa0pubescens trees exposed to air warming used ROS as signalling molecules. On calcareous soil, these trees were able to balance both soil drought and air warming stress, avoiding ROS toxic effects by increasing antioxidant enzyme activitiy and maintaining a high enzymatic antioxidant defence. When combined, drought and air warming induced either more severe (higher oxidative pressure and impairment of the light\uffe2\uff80\uff90harvesting complex) or different responses (decline of the thermal energy dissipation capacity) relative to the single stressors. Overall, however, Q.\uffc2\uffa0pubescens preserved the functionality of the photosynthetic apparatus and controlled the antioxidant system response, thus confirming its drought and thermo\uffe2\uff80\uff90tolerance and therefore its potential to adapt to the ongoing climate change.</p>", "keywords": ["0106 biological sciences", "0301 basic medicine", "Hot Temperature", "Climate", "Ribulose-Bisphosphate Carboxylase", "Light-Harvesting Protein Complexes", "Down-Regulation", "Global Warming", "01 natural sciences", "Antioxidants", "Quercus", "Soil", "03 medical and health sciences", "Antioxidant enzyme; ascorbate-glutathione cycle; chlorophyll a fluorescence; gas exchange; oak", "Stress", " Physiological", "Photosynthesis", "Ecosystem", "Antioxidant enzyme; ascorbate-glutathione cycle; chlorophyll a fluorescence; gas exchange; oak.", "Air", "Water", "15. Life on land", "Hydrogen-Ion Concentration", "Adaptation", " Physiological", "6. Clean water", "Droughts", "Oxidative Stress", "13. Climate action", "Plant Stomata"]}, "links": [{"href": "https://doi.org/10.1111/j.1438-8677.2012.00627.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1438-8677.2012.00627.x", "name": "item", "description": "10.1111/j.1438-8677.2012.00627.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1438-8677.2012.00627.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-06-05T00:00:00Z"}}, {"id": "10.1111/j.1365-3040.2011.02465.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:39Z", "type": "Journal Article", "created": "2011-11-17", "title": "Light Inhibition Of Leaf Respiration In Field-Grown Eucalyptus Saligna In Whole-Tree Chambers Under Elevated Atmospheric Co2 And Summer Drought", "description": "SUMMARY<p>We investigated whether the degree of light inhibition of leaf respiration (R) differs among large Eucalyptus saligna grown in whole\uffe2\uff80\uff90tree chambers and exposed to present and future atmospheric [CO2] and summer drought. Associated with month\uffe2\uff80\uff90to\uffe2\uff80\uff90month changes in temperature were concomitant changes in R in the light (Rlight) and darkness (Rdark), with both processes being more temperature dependent in well\uffe2\uff80\uff90watered trees than under drought. Overall rates of Rlight and Rdark were not significantly affected by [CO2]. By contrast, overall rates of Rdark (averaged across both [CO2]) were ca. 25% lower under drought than in well\uffe2\uff80\uff90watered trees. During summer, the degree of light inhibition of leaf R was greater in droughted (ca. 80% inhibition) than well\uffe2\uff80\uff90watered trees (ca. 50% inhibition). Notwithstanding these treatment differences, an overall positive relationship was observed between Rlight and Rdark when data from all months/treatments were combined (R2\uffe2\uff80\uff83=\uffe2\uff80\uff830.8). Variations in Rlight were also positively correlated with rates of Rubisco activity and nitrogen concentration. Light inhibition resulted in a marked decrease in the proportion of light\uffe2\uff80\uff90saturated photosynthesis respired (i.e. reduced R/Asat). Collectively, these results highlight the need to account for light inhibition when assessing impacts of global change drivers on the carbon economy of tree canopies.</p>", "keywords": ["0301 basic medicine", "0106 biological sciences", "Light", "01 natural sciences", "nitrogen", "ribulosebisphosphate carboxylase", "Trees", "Keywords: carbon", "leaf respiration", "Photosynthesis", "Eucalyptus", "concentration (composition)", "droughts", "drought stress", "Photorespiration", "Temperature", "Rlight", "Darkness", "Photochemical Processes", "6. Clean water", "inhibition", "Droughts", "assessment method", "Elevated CO2", "Seasons", "photorespiration", "Nitrogen", "light effect", "Ribulose-Bisphosphate Carboxylase", "water", "Cell Respiration", "evergreen tree", "03 medical and health sciences", "Stress", " Physiological", "XXXXXX - Unknown", "temp Carbon balance", "global change", "580", "photosynthesis", "Drought", "Australia", "carbon dioxide", "temperature", "Water", "Plant Transpiration", "15. Life on land", "Carbon Dioxide", "Carbon", "Plant Leaves", "13. Climate action", "Plant Stomata", "Leaf respiration", "respiration"]}, "links": [{"href": "https://openresearch-repository.anu.edu.au/bitstream/1885/51083/5/Light_inhibition_of_leaf_respiration_in_field-grown.pdf.jpg"}, {"href": "https://openresearch-repository.anu.edu.au/bitstream/1885/51083/7/01_Crous_Light_inhibition_of_leaf_2012.pdf.jpg"}, {"href": "https://doi.org/10.1111/j.1365-3040.2011.02465.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%2C%20Cell%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-3040.2011.02465.x", "name": "item", "description": "10.1111/j.1365-3040.2011.02465.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-3040.2011.02465.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-12-14T00:00:00Z"}}, {"id": "10.1111/j.1399-3054.2008.01138.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:19:39Z", "type": "Journal Article", "created": "2008-05-26", "title": "Adjustments Of Water Use Efficiency By Stomatal Regulation During Drought And Recovery In The Drought-Adaptedvitishybrid Richter-110 (V.\u2003Berlandieri\u2003\u00d7\u2003V.\u2003Rupestris)", "description": "<p>The hybrid Richter\uffe2\uff80\uff90110 (Vitis berlandieri\uffe2\uff80\uff83\uffc3\uff97\uffe2\uff80\uff83Vitis rupestris) (R\uffe2\uff80\uff90110) has the reputation of being a genotype strongly adapted to drought. A study was performed with plants of R\uffe2\uff80\uff90110 subjected to water withholding followed by re\uffe2\uff80\uff90watering. The goal was to analyze how stomatal conductance (gs) is regulated with respect to different physiological variables under water stress and recovery, as well as how water stress affects adjustments of water use efficiency (WUE) at the leaf level. Water stress induced a substantial stomatal closure and an increase in WUE, which persisted many days after re\uffe2\uff80\uff90watering. The gs during water stress was mainly related to the content of ABA in the xylem and partly related to plant hydraulic conductivity but not to leaf water potential. By contrast, low gs during re\uffe2\uff80\uff90watering did not correlate with ABA contents and was only related to a sustained decreased hydraulic conductivity. In addition to a complex physiological regulation of stomatal closure, gs and rate of transpiration (E) were strongly affected by leaf\uffe2\uff80\uff90to\uffe2\uff80\uff90air vapor pressure deficit (VPD) in a way dependent of the treatment. Interestingly, E increased with increasing VPD in control plants, but decreased with increasing VPD in severely stressed plants. All together, the fine stomatal regulation in R\uffe2\uff80\uff90110 resulted in very high WUE at the leaf level. This genotype is revealed to be very interesting for further studies on the physiological mechanisms leading to regulation of stomatal responsiveness and WUE in response to drought.</p>", "keywords": ["0106 biological sciences", "Picea abies", "Stomatal conductance; water use efficiency; water stress; drought; water potential; water relations; plant hydraulics; abscisic acid; vapour pressure deficit", "Water", "Plant Transpiration", "svinec", "info:eu-repo/classification/udc/581", "15. Life on land", "sadike", "Adaptation", " Physiological", "01 natural sciences", "6. Clean water", "Droughts", "Plant Leaves", "Plant Stomata", "Hybridization", " Genetic", "Vitis", "citokinin"]}, "links": [{"href": "https://doi.org/10.1111/j.1399-3054.2008.01138.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Physiologia%20Plantarum", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1399-3054.2008.01138.x", "name": "item", "description": "10.1111/j.1399-3054.2008.01138.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1399-3054.2008.01138.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-09-15T00:00:00Z"}}, {"id": "10.1111/j.1438-8677.2011.00552.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:39Z", "type": "Journal Article", "created": "2012-01-30", "title": "Water Regime And Growth Of Young Oak Stands Subjected To Air-Warming And Drought On Two Different Forest Soils In A Model Ecosystem Experiment", "description": "Abstract<p>Global climate change is expected to increase annual temperatures and decrease summer precipitation in Central Europe. Little is known of how forests respond to the interaction of these climate factors and if their responses depend on soil conditions. In a 3\uffe2\uff80\uff90year lysimeter experiment, we investigated the growth response of young mixed oak stands, on either acidic or calcareous soil, to soil water regime, air\uffe2\uff80\uff90warming and drought treatments corresponding to an intermediate climate change scenario. The air\uffe2\uff80\uff90warming and drought treatments were applied separately as well as in combination. The air\uffe2\uff80\uff90warming treatment had no effect on soil water availability, evapotranspiration or stand biomass. Decreased evapotranspiration from the drought\uffe2\uff80\uff90exposed stands led to significantly higher air and soil temperatures, which were attributed to impaired transpirational cooling. Water limitation significantly reduced the stand foliage, shoot and root biomass as droughts were severe, as shown in low leaf water potentials. Additional air warming did not enhance the drought effects on evapotranspiration and biomass, although more negative leaf water potentials were observed. After re\uffe2\uff80\uff90watering, evapotranspiration increased within a few days to pre\uffe2\uff80\uff90drought levels. Stands not subjected to the drought treatment produced significantly less biomass on the calcareous soil than on the acidic soil, probably due to P or Mn limitation. There was no difference in biomass and water regime between the two soils under drought conditions, indicating that nutrient availability was governed by water availability under these conditions. The results demonstrate that young oak stands can cope with severe drought and therefore can be considered for future forestry.</p>", "keywords": ["0301 basic medicine", "0106 biological sciences", "Hot Temperature", "Global Warming", "01 natural sciences", "Trees", "03 medical and health sciences", "Quercus", "Soil", "Stress", " Physiological", "Root: shoot ratio", "Soil temperature", "Biomass", "Ecosystem", "Manganese", "Evapotranspiration", "Air", "Water use efficiency", "Water", "Phosphorus", "Plant Transpiration", "04 agricultural and veterinary sciences", "15. Life on land", "Adaptation", " Physiological", "6. Clean water", "Droughts", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Plant Structures", "Soil-plant interactions"]}, "links": [{"href": "https://doi.org/10.1111/j.1438-8677.2011.00552.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1438-8677.2011.00552.x", "name": "item", "description": "10.1111/j.1438-8677.2011.00552.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1438-8677.2011.00552.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-01-30T00:00:00Z"}}, {"id": "10.1111/j.1438-8677.2012.00686.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:39Z", "type": "Journal Article", "created": "2012-12-22", "title": "Nitrogen Dynamics In Oak Model Ecosystems Subjected To Air Warming And Drought On Two Different Soils", "description": "Abstract<p>Being tolerant to heat and drought, oaks are promising candidates for future forestry in view of climate change inCentralEurope. Air warming is expected to increase, and drought decrease soilNavailability and thusNsupply to trees. Here, we conducted a model ecosystem experiment, in which mixed stands of young oaks (Quercus robur,Q.\uffc2\uffa0petraeaandQ.\uffc2\uffa0pubescens) were grown on two different soils and subjected to four climate treatments during three growing seasons: air warming by 1\uffe2\uff80\uff932\uffc2\uffa0\uffc2\uffb0C, drought periods (average precipitation reduction of 43\uffe2\uff80\uff9360%), a combination of these two treatments, and a control. In contrast to our hypotheses, neither air warming nor drought significantly affectedNavailability, whereas total amounts, vertical distribution and availability of soilNshowed substantial differences between the two soils. While air warming had no effect on tree growth andNaccumulation, the drought treatment reduced tree growth and increased, or tended to increase,Naccumulation in the reduced biomass, indicating that growth was not limited byN. Furthermore,15N\uffe2\uff80\uff90labelling revealed that this accumulation was associated with an increased uptake of nitrate. On the basis of our results, climate change effects onNdynamics are expected to be less important in oak stands than reduced soil water availability.</p>", "keywords": ["0106 biological sciences", "Hot Temperature", "Nitrogen", "Climate", "Rain", "Quercus petraea", "Nitrate", "Global Warming", "Models", " Biological", "01 natural sciences", "Quercus", "Soil", "Species Specificity", "Stress", " Physiological", "Climate change", "Biomass", "Ecosystem", "Nitrates", "Air", "Water", "04 agricultural and veterinary sciences", "15. Life on land", "Adaptation", " Physiological", "6. Clean water", "Droughts", "15N tracer", "Recovery rate", "Quercus pubescens", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Quercus robur", "Ammonium"]}, "links": [{"href": "https://doi.org/10.1111/j.1438-8677.2012.00686.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1438-8677.2012.00686.x", "name": "item", "description": "10.1111/j.1438-8677.2012.00686.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1438-8677.2012.00686.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-12-21T00:00:00Z"}}, {"id": "10.1111/j.1461-0248.2009.01352.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:40Z", "type": "Journal Article", "created": "2009-07-23", "title": "Shrub Encroachment Can Reverse Desertification In Semi-Arid Mediterranean Grasslands", "description": "Abstract<p>The worldwide phenomenon of shrub encroachment in grass\uffe2\uff80\uff90dominated dryland ecosystems is commonly associated with desertification. Studies of the purported desertification effects associated with shrub encroachment are often restricted to relatively few study areas, and document a narrow range of possible impacts upon biota and ecosystem processes. We conducted a study in degraded Mediterranean grasslands dominated by Stipa tenacissima to simultaneously evaluate the effects of shrub encroachment on the structure and composition of multiple biotic community components, and on various indicators of ecosystem function. Shrub encroachment enhanced vascular plant richness, biomass of fungi, actinomycetes and other bacteria, and was linked with greater soil fertility and N mineralization rates. While shrub encroachment may be a widespread phenomenon in drylands, an interpretation that this is an expression of desertification is not universal. Our results suggest that shrub establishment may be an important step in the reversal of desertification processes in the Mediterranean region.</p>", "keywords": ["0106 biological sciences", "2. Zero hunger", "Mediterranean Region", "Shrub encroachment", "Mediterranean", "15. Life on land", "01 natural sciences", "Soil", "Stipa tenacissima", "Semi-arid", "13. Climate action", "Ecosystem functioning", "Desert Climate", "Plant successional dynamics", "Global change", "Desertification", "Ecosystem", "Plant Physiological Phenomena"]}, "links": [{"href": "https://doi.org/10.1111/j.1461-0248.2009.01352.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1461-0248.2009.01352.x", "name": "item", "description": "10.1111/j.1461-0248.2009.01352.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1461-0248.2009.01352.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-08-13T00:00:00Z"}}, {"id": "10.1111/j.1461-0248.2008.01251.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:40Z", "type": "Journal Article", "created": "2008-10-02", "title": "Thermal Adaptation Of Soil Microbial Respiration To Elevated Temperature", "description": "Abstract<p>In the short\uffe2\uff80\uff90term heterotrophic soil respiration is strongly and positively related to temperature. In the long\uffe2\uff80\uff90term, its response to temperature is uncertain. One reason for this is because in field experiments increases in respiration due to warming are relatively short\uffe2\uff80\uff90lived. The explanations proposed for this ephemeral response include depletion of fast\uffe2\uff80\uff90cycling, soil carbon pools and thermal adaptation of microbial respiration. Using a &gt;\uffe2\uff80\uff8315\uffe2\uff80\uff83year soil warming experiment in a mid\uffe2\uff80\uff90latitude forest, we show that the apparent \uffe2\uff80\uff98acclimation\uffe2\uff80\uff99 of soil respiration at the ecosystem scale results from combined effects of reductions in soil carbon pools and microbial biomass, and thermal adaptation of microbial respiration. Mass\uffe2\uff80\uff90specific respiration rates were lower when seasonal temperatures were higher, suggesting that rate reductions under experimental warming likely occurred through temperature\uffe2\uff80\uff90induced changes in the microbial community. Our results imply that stimulatory effects of global temperature rise on soil respiration rates may be lower than currently predicted.</p>", "keywords": ["0106 biological sciences", "Hot Temperature", "Physiological", "adaptation", "carbon cycling", "soil respiration", "01 natural sciences", "climate warming", "thermal biology", "Soil", "Biomass", "Adaptation", "Soil Microbiology", "Evolutionary Biology", "Ecology", "temperature", "04 agricultural and veterinary sciences", "Biogeochemistry", "15. Life on land", "Adaptation", " Physiological", "Climate Action", "climate change", "13. Climate action", "Ecological Applications", "Regression Analysis", "0401 agriculture", " forestry", " and fisheries", "CO2", "Seasons", "microbial community", "Acclimation"]}, "links": [{"href": "https://escholarship.org/content/qt1kz5j4pn/qt1kz5j4pn.pdf"}, {"href": "https://doi.org/10.1111/j.1461-0248.2008.01251.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1461-0248.2008.01251.x", "name": "item", "description": "10.1111/j.1461-0248.2008.01251.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1461-0248.2008.01251.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-11-05T00:00:00Z"}}, {"id": "10.1111/j.1461-0248.2010.01547.x", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-06-23T16:19:40Z", "type": "Journal Article", "created": "2010-11-15", "title": "Soil Fungal Pathogens And The Relationship Between Plant Diversity And Productivity", "description": "One robust result from many small-scale experiments has been that plant community productivity often increases with increasing plant diversity. Most frequently, resource-based or competitive interactions are thought to drive this positive diversity-productivity relationship. Here, we ask whether suppression of plant productivity by soil fungal pathogens might also drive a positive diversity-productivity relationship. We created plant assemblages that varied in diversity and crossed this with a \u00b1 soil fungicide treatment. In control (non-fungicide treated) assemblages there was a strong positive relationship between plant diversity and above-ground plant biomass. However, in fungicide-treated assemblages this relationship disappeared. This occurred because fungicide increased plant production by an average of 141% at the lower ends of diversity but boosted production by an average of only 33% at the higher ends of diversity, essentially flattening the diversity-productivity curve. These results suggest that soil pathogens might be a heretofore unappreciated driver of diversity-productivity relationships.", "keywords": ["0106 biological sciences", "2. Zero hunger", "Host-Pathogen Interactions", "Fungi", "0401 agriculture", " forestry", " and fisheries", "Biodiversity", "Biomass", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "Plant Physiological Phenomena", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1111/j.1461-0248.2010.01547.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1461-0248.2010.01547.x", "name": "item", "description": "10.1111/j.1461-0248.2010.01547.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1461-0248.2010.01547.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-11-14T00:00:00Z"}}, {"id": "10.1111/j.1469-8137.2004.01036.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:19:41Z", "type": "Journal Article", "created": "2004-04-13", "title": "Relationships Between Needle Nitrogen Concentration And Photosynthetic Responses Of Douglas-Fir Seedlings To Elevated Co2 And Temperature", "description": "Summary \u2022 Here we examined correlations between needle nitrogen concentration ([N]) and photosynthetic responses of Douglas-fir ( Pseudotsuga menziesii ) seedlings to growth in elevated temperatures and atmospheric carbon dioxide concentrations ([CO 2 ]). \u2022 Seedlings were grown in sunlit, climate-controlled chambers at ambient or ambient +3.5 \u00b0 C and ambient or ambient +180 \u00b5mol mol \u2212 1 CO 2 in a full factorial design. Photosynthetic parameters and needle [N] were measured six times over a 21-month period. \u2022 Needle [N] varied seasonally, and accounted for 30\u201050% of the variation in photosynthetic parameters. Across measurement periods, elevated temperature increased needle [N] by 26% and light-saturated net photosynthetic rates by 17%. Elevated [CO 2 ] decreased needle [N] by 12%, and reduced net photosynthetic rates measured at a common [CO 2 ], maximum carboxylation activity ( V c,max ) and electron transport capacity ( J max ), indicating photosynthetic acclimatization. Even so, elevated [CO 2 ] enhanced net photosynthesis, and this effect increased with needle [N]. \u2022 These results suggest that needle [N] may regulate photosynthetic responses of Douglas-fir to climate change. Further, needle [N] may be altered by climate change. However, effects of elevated [CO 2 ] on photosynthesis may be similar across growth temperatures.", "keywords": ["Other Ecology and Evolutionary Biology", "0106 biological sciences", "Douglas fir -- Growth", "13. Climate action", "Botany", "Acclimatization (Plants)", "Atmospheric carbon dioxide -- Physiological effect", "Photosynthesis", "15. Life on land", "01 natural sciences", "Environmental Monitoring"]}, "links": [{"href": "https://doi.org/10.1111/j.1469-8137.2004.01036.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1469-8137.2004.01036.x", "name": "item", "description": "10.1111/j.1469-8137.2004.01036.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1469-8137.2004.01036.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-03-11T00:00:00Z"}}, {"id": "10.1111/j.1469-8137.2008.02643.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:41Z", "type": "Journal Article", "created": "2008-10-09", "title": "Precipitation Timing And Magnitude Differentially Affect Aboveground Annual Net Primary Productivity In Three Perennial Species In A Chihuahuan Desert Grassland", "description": "<p>DOI:10.1111/j.1469-8137.2008.02695.xCommentary p 5</p>", "keywords": ["0106 biological sciences", "aboveground annual net primary productivity (ANPP)", "desert grasslands", "Rain", "global climate change", "Chihuahuan desert", "Opuntia", "precipitation", "15. Life on land", "Poaceae", "Adaptation", " Physiological", "Texas", "01 natural sciences", "Soil", "XXXXXX - Unknown", "Liliaceae", "Biomass", "Desert Climate"]}, "links": [{"href": "https://doi.org/10.1111/j.1469-8137.2008.02643.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1469-8137.2008.02643.x", "name": "item", "description": "10.1111/j.1469-8137.2008.02643.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1469-8137.2008.02643.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-12-03T00:00:00Z"}}, {"id": "10.1111/j.1574-6968.2006.00409.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:19:45Z", "type": "Journal Article", "created": "2006-08-15", "title": "Effects Of An Invasive Cattail Species (Typha X Glauca) On Sediment Nitrogen And Microbial Community Composition In A Freshwater Wetland", "description": "Sediments from Cheboygan Marsh, a coastal freshwater wetland on Lake Huron that has been invaded by an emergent exotic plant, Typhaxglauca, were examined to assess the effects of invasion on wetland nutrient levels and sediment microbial communities. Comparison of invaded and uninvaded zones of the marsh indicated that the invaded zone showed significantly lower plant diversity, as well as significantly higher aboveground plant biomass and soil organic matter. The sediments in the invaded zone also showed dramatically higher concentrations of soluble nutrients, including greater than 10-fold higher soluble ammonium, nitrate, and phosphate, which suggests that Typhaxglauca invasion may be impacting the wetland's ability to remove nutrients. Terminal restriction fragment length polymorphism analyses revealed significant differences in the composition of total bacterial communities (based on 16S-rRNA genes) and denitrifier communities (based on nirS genes) between invaded and uninvaded zones. This shift in denitrifiers in the sediments may be ecologically significant due to the critical role that denitrifying bacteria play in removal of nitrogen by wetlands.", "keywords": ["0106 biological sciences", "Geologic Sediments", "Michigan", "Bacteria", "Geography", "Nitrogen", "Fresh Water", "Plants", "15. Life on land", "Bacterial Physiological Phenomena", "Typhaceae", "01 natural sciences", "6. Clean water", "13. Climate action", "Environmental Microbiology", "Ecosystem", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1111/j.1574-6968.2006.00409.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/FEMS%20Microbiology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1574-6968.2006.00409.x", "name": "item", "description": "10.1111/j.1574-6968.2006.00409.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1574-6968.2006.00409.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-10-01T00:00:00Z"}}, {"id": "10.1111/nph.15014", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:49Z", "type": "Journal Article", "created": "2018-02-09", "title": "Native soils with their microbiotas elicit a state of alert in tomato plants", "description": "Summary<p>   <p>Several studies have investigated soil microbial biodiversity, but understanding of the mechanisms underlying plant responses to soil microbiota remains in its infancy. Here, we focused on tomato (Solanum lycopersicum), testing the hypothesis that plants grown on native soils display different responses to soil microbiotas.</p>  <p>Using transcriptomics, proteomics, and biochemistry, we describe the responses of two tomato genotypes (susceptible or resistant to Fusarium oxysporum f. sp. lycopersici) grown on an artificial growth substrate and two native soils (conducive and suppressive to Fusarium).</p>  <p>Native soils affected tomato responses by modulating pathways involved in responses to oxidative stress, phenol biosynthesis, lignin deposition, and innate immunity, particularly in the suppressive soil. In tomato plants grown on steam\uffe2\uff80\uff90disinfected soils, total phenols and lignin decreased significantly. The inoculation of a mycorrhizal fungus partly rescued this response locally and systemically. Plants inoculated with the fungal pathogen showed reduced disease symptoms in the resistant genotype in both soils, but the susceptible genotype was partially protected from the pathogen only when grown on the suppressive soil.</p>  <p>The \uffe2\uff80\uff98state of alert\uffe2\uff80\uff99 detected in tomatoes reveals novel mechanisms operating in plants in native soils and the soil microbiota appears to be one of the drivers of these plant responses.</p>  </p>", "keywords": ["0301 basic medicine", "Proteome", "Propanols", "Arbuscular mycorrhizal fungi", "arbuscular mycorrhizal fungi", "tomato", "Lignin", "Models", " Biological", "Plant Roots", "defence responses", "Tomato", "Soil", "03 medical and health sciences", "Solanum lycopersicum", "Gene Expression Regulation", " Plant", "Stress", " Physiological", "microbiota", "Plant Immunity", "Soil Microbiology", "suppressive and conducive soils", "susceptible and resistant genotypes", "2. Zero hunger", "0303 health sciences", "Defence responses", "Microbiota", "15. Life on land", "Lignin biosynthesis", "Gene Ontology", "Susceptible and resistant genotypes", "Arbuscular mycorrhizal fungi; Defence responses; Lignin biosynthesis; Microbiota; Suppressive and conducive soils; Susceptible and resistant genotypes; Tomato; Physiology; Plant Science", "Suppressive and conducive soils", "Transcriptome", "lignin biosynthesis"]}, "links": [{"href": "https://iris.unito.it/bitstream/2318/1660820/1/Chialva%20et%20al%20Iris.pdf"}, {"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.15014"}, {"href": "https://doi.org/10.1111/nph.15014"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.15014", "name": "item", "description": "10.1111/nph.15014", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.15014"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-02-09T00:00:00Z"}}, {"id": "10.1111/nph.15688", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:19:49Z", "type": "Journal Article", "created": "2019-01-19", "title": "Towards a more physiological representation of vegetation phosphorus processes in land surface models", "description": "Summary<p>Our ability to understand the effect of nutrient limitation on ecosystem productivity is key to the prediction of future terrestrial carbon storage. Significant progress has been made to include phosphorus (P) cycle processes in land surface models (LSMs), but these efforts are focused on the soil component of the P cycle. Incorporating the soil component is important to estimate plant\uffe2\uff80\uff90available P, but does not necessarily address the vegetation response to P limitation or plant\uffe2\uff80\uff93soil interactions. A more detailed representation of plant P processes is needed to link nutrient availability and ecosystem productivity. We review physiological and biochemical evidence for vegetation responses to P availability, and recommend ways to move towards a more physiological representation of vegetation P processes in LSMs.</p>", "keywords": ["2. Zero hunger", "0106 biological sciences", "plants", "Phosphorus", "growth (plants)", "15. Life on land", "Models", " Biological", "01 natural sciences", "Carbon", "13. Climate action", "XXXXXX - Unknown", "Biomass", "phosphorus content", "Photosynthesis", "metabolism", "soils", "Plant Physiological Phenomena", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.15688"}, {"href": "https://doi.org/10.1111/nph.15688"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.15688", "name": "item", "description": "10.1111/nph.15688", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.15688"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-02-19T00:00:00Z"}}, {"id": "10.1126/science.aal1727", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:55Z", "type": "Journal Article", "created": "2017-05-26", "title": "Satellites reveal contrasting responses of regional climate to the widespread greening of Earth", "description": "<p>Increasing terrestrial biomass has important impacts on the climate that affects it.</p>", "keywords": ["Population Density", "Satellite Imagery", "Multidisciplinary", "Time Factors", "Climate", "Climate Change", "Temperature", "Biophysical Phenomena; Climate Change; Population Density; Sunlight; Temperature; Time Factors; Climate; Models", " Theoretical; Plant Physiological Phenomena; Satellite Imagery", "Models", " Theoretical", "15. Life on land", "01 natural sciences", "Biophysical Phenomena", "13. Climate action", "Sunlight", "European Commission", "Plant Physiological Phenomena", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1126/science.aal1727"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1126/science.aal1727", "name": "item", "description": "10.1126/science.aal1727", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1126/science.aal1727"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-06-16T00:00:00Z"}}, {"id": "10.1128/mBio.00799-17", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:19:56Z", "type": "Journal Article", "created": "2017-03-19", "title": "Bacterial Physiological Adaptations to Contrasting Edaphic Conditions Identified Using Landscape Scale Metagenomics", "description": "Abstract<p>Environmental factors relating to soil pH are widely known to be important in structuring soil bacterial communities, yet the relationship between taxonomic community composition and functional diversity remains to be determined. Here, we analyze geographically distributed soils spanning a wide pH gradient and assess the functional gene capacity within those communities using whole genome metagenomics. Low pH soils consistently had fewer taxa (lower alpha and gamma diversity), but only marginal reductions in functional alpha diversity and equivalent functional gamma diversity. However, coherent changes in the relative abundances of annotated genes between pH classes were identified; with functional profiles clustering according to pH independent of geography. Differences in gene abundances were found to reflect survival and nutrient acquisition strategies, with organic-rich acidic soils harboring a greater abundance of cation efflux pumps, C and N direct fixation systems and fermentation pathways indicative of anaerobiosis. Conversely, high pH soils possessed more direct transporter-mediated mechanisms for organic C and N substrate acquisition. These findings show that bacterial functional versatility may not be constrained by taxonomy, and we further identify the range of physiological adaptations required to exist in soils of varying nutrient availability and edaphic conditions.</p>", "keywords": ["Q Science", "0301 basic medicine", "330", "Supplementary Data", "ecophysiology", "Ecophysiology", "NE/E006353/1", "Bacterial Physiological Phenomena", "Microbiology", "Soil", "03 medical and health sciences", "Virology", "European Commission", "Ecosystem", "Phylogeny", "Soil Microbiology", "2. Zero hunger", "655240", "metagenomics", "0303 health sciences", "Bacteria", "Natural Environment Research Council (NERC)", "Q", "NE/M017125/1", "Biodiversity", "Hydrogen-Ion Concentration", "15. Life on land", "Adaptation", " Physiological", "soil microbiology", "QR1-502", "United Kingdom", "3. Good health", "Soil microbiology", "Metagenomics", "Genome", " Bacterial", "Research Article"]}, "links": [{"href": "https://www.biorxiv.org/content/10.1101/117887v1.full.pdf"}, {"href": "https://journals.asm.org/doi/pdf/10.1128/mBio.00799-17"}, {"href": "https://doi.org/10.1128/mBio.00799-17"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/mBio", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/mBio.00799-17", "name": "item", "description": "10.1128/mBio.00799-17", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/mBio.00799-17"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-03-18T00:00:00Z"}}, {"id": "10.3390/genes11091011", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:21:43Z", "type": "Journal Article", "created": "2020-08-27", "title": "Phenotyping in Arabidopsis and Crops\u2014Are We Addressing the Same Traits? A Case Study in Tomato", "description": "<p>The convenient model Arabidopsis thaliana has allowed tremendous advances in plant genetics and physiology, in spite of only being a weed. It has also unveiled the main molecular networks governing, among others, abiotic stress responses. Through the use of the latest genomic tools, Arabidopsis research is nowadays being translated to agronomically interesting crop models such as tomato, but at a lagging pace. Knowledge transfer has been hindered by invariable differences in plant architecture and behaviour, as well as the divergent direct objectives of research in Arabidopsis vs. crops compromise transferability. In this sense, phenotype translation is still a very complex matter. Here, we point out the challenges of \uffe2\uff80\uff9ctranslational phenotyping\uffe2\uff80\uff9d in the case study of drought stress phenotyping in Arabidopsis and tomato. After briefly defining and describing drought stress and survival strategies, we compare drought stress protocols and phenotyping techniques most commonly used in the two species, and discuss their potential to gain insights, which are truly transferable between species. This review is intended to be a starting point for discussion about translational phenotyping approaches among plant scientists, and provides a useful compendium of methods and techniques used in modern phenotyping for this specific plant pair as a case study.</p>", "keywords": ["Crops", " Agricultural", "0301 basic medicine", "2. Zero hunger", "9. Industry and infrastructure", "Arabidopsis", "Review", "15. Life on land", "6. Clean water", "Droughts", "03 medical and health sciences", "Phenotype", "Solanum lycopersicum", "Gene Expression Regulation", " Plant", "Stress", " Physiological", "Arabidopsis; tomato; phenotyping; drought stress; translational phenotyping; osmotic stress; Dehydration; Arabidopsis thaliana; Solanum lycopersicum; Lycopersicon esculentum", "Plant Proteins"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/898415/2/genes-11-01011-v3.pdf"}, {"href": "https://iris.unito.it/bitstream/2318/1757296/1/genes-11-01011-v3.pdf"}, {"href": "https://www.mdpi.com/2073-4425/11/9/1011/pdf"}, {"href": "https://doi.org/10.3390/genes11091011"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Genes", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/genes11091011", "name": "item", "description": "10.3390/genes11091011", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/genes11091011"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-08-27T00:00:00Z"}}, {"id": "10.1371/journal.pone.0051818", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:20:14Z", "type": "Journal Article", "created": "2012-12-20", "title": "Calcium Induces Long-Term Legacy Effects In A Subalpine Ecosystem", "description": "Human activities have transformed a significant proportion of the world's land surface, with profound effects on ecosystem processes. Soil applications of macronutrients such as nitrate, phosphorus, potassium or calcium are routinely used in the management of croplands, grasslands and forests to improve plant health or increase productivity. However, while the effects of continuous fertilization and liming on terrestrial ecosystems are well documented, remarkably little is known about the legacy effect of historical fertilization and liming events in terrestrial ecosystems and of the mechanisms involved. Here, we show that more than 70 years after the last application of lime on a subalpine grassland, all major soil and plant calcium pools were still significantly larger in limed than in unlimed plots, and that the resulting shift in the soil calcium/aluminium ratio continues to affect ecosystem services such as primary production. The difference in the calcium content of the vegetation and the topmost 10 cm of the soil in limed vs. unlimed plots amounts to approximately 19.5 g m(-2), equivalent to 16.3% of the amount that was added to the plots some 70 years ago. In contrast, plots that were treated with nitrogen-phosphorus-potassium fertilizer in the 1930s did not differ from unfertilized plots in any of the soil and vegetation characteristics measured. Our findings suggest that the long-term legacy effect of historical liming is due to long-term storage of added calcium in stable soil pools, rather than a general increase in nutrient availability. Our results demonstrate that single applications of calcium in its carbonated form can profoundly and persistently alter ecosystem processes and services in mountain ecosystems.", "keywords": ["EFFET SUR VEGETAL", "[SDE] Environmental Sciences", "0301 basic medicine", "Nitrogen", "Science", "580 Plants (Botany)", "CALCIUM", "Time", "Soil", "03 medical and health sciences", "ECOSYSTEME MONTAGNARD", "Humans", "Fertilizers", "Ecosystem", "Plant Physiological Phenomena", "2. Zero hunger", "0303 health sciences", "Q", "R", "Phosphorus", "Calcium Compounds", "15. Life on land", "6. Clean water", "FERTILISATION", "13. Climate action", "[SDE]Environmental Sciences", "Medicine", "Research Article"]}, "links": [{"href": "https://boris.unibe.ch/91277/1/journal.pone.0051818.PDF"}, {"href": "https://hal.science/hal-00778782/file/gr2012-pub00036992.pdf"}, {"href": "https://doi.org/10.1371/journal.pone.0051818"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0051818", "name": "item", "description": "10.1371/journal.pone.0051818", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0051818"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-12-20T00:00:00Z"}}, {"id": "10.1371/journal.pone.0092517", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:20:15Z", "type": "Journal Article", "created": "2014-04-02", "title": "Ammonium as a Driving Force of Plant Diversity and Ecosystem Functioning: Observations Based on 5 Years' Manipulation of N Dose and Form in a Mediterranean Ecosystem", "description": "Enhanced nitrogen (N) availability is one of the main drivers of biodiversity loss and degradation of ecosystem functions. However, in very nutrient-poor ecosystems, enhanced N input can, in the short-term, promote diversity. Mediterranean Basin ecosystems are nutrient-limited biodiversity hotspots, but no information is available on their medium- or long-term responses to enhanced N input. Since 2007, we have been manipulating the form and dose of available N in a Mediterranean Basin maquis in south-western Europe that has low ambient N deposition (<4 kg N ha(-1) yr(-1)) and low soil N content (0.1%). N availability was modified by the addition of 40 kg N ha(-1) yr(-1) as a 1\u22361 NH4Cl to (NH4)2SO4 mixture, and 40 and 80 kg N ha(-1) yr(-1) as NH4NO3. Over the following 5 years, the impacts on plant composition and diversity (richness and evenness) and some ecosystem characteristics (soil extractable N and organic matter, aboveground biomass and % of bare soil) were assessed. Plant species richness increased with enhanced N input and was more related to ammonium than to nitrate. Exposure to 40 kg NH4+-N ha(-1) yr(-1) (alone and with nitrate) enhanced plant richness, but did not increase aboveground biomass; soil extractable N even increased under 80 kg NH4NO3-N ha(-1) yr(-1) and the % of bare soil increased under 40 kg NH4+-N ha(-1) yr(-1). The treatment containing less ammonium, 40 kg NH4NO3-N ha(-1) yr(-1), did not enhance plant diversity but promoted aboveground biomass and reduced the % of bare soil. Data suggest that enhanced NHy availability affects the structure of the maquis, which may promote soil erosion and N leakage, whereas enhanced NOx availability leads to biomass accumulation which may increase the fire risk. These observations are relevant for land use management in biodiverse and fragmented ecosystems such as the maquis, especially in conservation areas.", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Mediterranean Region", "Science", "Q", "R", "Aquatic Ecology", "Biodiversity", "Plants", "15. Life on land", "6. Clean water", "03 medical and health sciences", "Ammonia", "13. Climate action", "Medicine", "Plant Physiological Phenomena", "Research Article"]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0092517"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0092517", "name": "item", "description": "10.1371/journal.pone.0092517", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0092517"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-04-02T00:00:00Z"}}, {"id": "10.1371/journal.pone.0100577", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:20:15Z", "type": "Journal Article", "created": "2014-06-23", "title": "Growth And Phenology Of Three Dwarf Shrub Species In A Six-Year Soil Warming Experiment At The Alpine Treeline", "description": "Global warming can have substantial impacts on the phenological and growth patterns of alpine and Arctic species, resulting in shifts in plant community composition and ecosystem dynamics. We evaluated the effects of a six-year experimental soil warming treatment (+4\u00b0C, 2007-2012) on the phenology and growth of three co-dominant dwarf shrub species growing in the understory of Larix decidua and Pinus uncinata at treeline in the Swiss Alps. We monitored vegetative and reproductive phenology of Vaccinium myrtillus, Vaccinium gaultherioides and Empetrum hermaphroditum throughout the early growing season of 2012 and, following a major harvest at peak season, we measured the biomass of above-ground ramet fractions. For all six years of soil warming we measured annual shoot growth of the three species and analyzed ramet age and xylem ring width of V. myrtillus. Our results show that phenology of the three species was more influenced by snowmelt timing, and also by plot tree species (Larix or Pinus) in the case of V. myrtillus, than by soil warming. However, the warming treatment led to increased V. myrtillus total above-ground ramet biomass (+36% in 2012), especially new shoot biomass (+63% in 2012), as well as increased new shoot increment length and xylem ring width (+22% and +41%, respectively; average for 2007-2012). These results indicate enhanced overall growth of V. myrtillus under soil warming that was sustained over six years and was not caused by an extended growing period in early summer. In contrast, E. hermaphroditum only showed a positive shoot growth response to warming in 2011 (+21%), and V. gaultherioides showed no significant growth response. Our results indicate that V. myrtillus might have a competitive advantage over the less responsive co-occurring dwarf shrub species under future global warming.", "keywords": ["0106 biological sciences", "Nitrogen", "Science", "Q", "R", "Temperature", "Carbon Dioxide", "15. Life on land", "Adaptation", " Physiological", "01 natural sciences", "Soil", "13. Climate action", "11. Sustainability", "Medicine", "Ericaceae", "Ecosystem", "Plant Shoots", "Vaccinium", "Research Article"]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0100577"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0100577", "name": "item", "description": "10.1371/journal.pone.0100577", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0100577"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-06-23T00:00:00Z"}}, {"id": "10.1371/journal.pone.0102344", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:20:16Z", "type": "Journal Article", "created": "2014-07-17", "title": "Relationships Of Biomass With Environmental Factors In The Grassland Area Of Hulunbuir, China", "description": "Many studies have focused on the relationship between vegetation biomass and environmental factors in grassland. However, several questions remain to be answered, especially with regards to the spatial pattern of vegetation biomass. Thus, the distributed mechanism will be explored in the present study. Here, plant biomass was measured at 23 sites along a transect survey during the peak growing season in 2006. The data were analyzed with a classification and regression tree (CART) model. The structural equation modeling (SEM) was conducted to explicitly evaluate the both direct and indirect effects of these critical environmental elements on vegetation biomass. The results demonstrated that mean annual temperature (MAT) affected aboveground biomass (AGB) scored at -0.811 (P<0.05). The direct effect of MAT on belowground biomass (BGB) was -0.490 (P<0.05). The results were determined by SEM. Our results indicate that AGB and BGB in semi-arid ecosystems is strongly affected by precipitation and temperature. Future work shall attempt to take into account the integrated effects of precipitation and temperature. Meanwhile, partitioning the influences of environmental variations and vegetation types are helpful in illuminating the internal mechanism of biomass distribution.", "keywords": ["0106 biological sciences", "2. Zero hunger", "China", "Models", " Statistical", "Science", "Climate", "Data Collection", "Rain", "Q", "R", "Temperature", "Mongolia", "04 agricultural and veterinary sciences", "Plants", "15. Life on land", "Grassland", "01 natural sciences", "13. Climate action", "Medicine", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Plant Physiological Phenomena", "Research Article"]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0102344"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0102344", "name": "item", "description": "10.1371/journal.pone.0102344", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0102344"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-07-17T00:00:00Z"}}, {"id": "10.1371/journal.pone.0115395", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:20:16Z", "type": "Journal Article", "created": "2014-12-18", "title": "Elevation-Related Variation In Leaf Stomatal Traits As A Function Of Plant Functional Type: Evidence From Changbai Mountain, China", "description": "Understanding the variation in stomatal characteristics in relation to climatic gradients can reveal the adaptation strategies of plants, and help us to predict their responses to future climate changes. In this study, we investigated stomatal density (SD) and stomatal length (SL) in 150 plant species along an elevation gradient (540-2357 m) in Changbai Mountain, China, and explored the patterns and drivers of stomatal characteristics across species and plant functional types (PFTs: trees, shrubs, and herbs). The average values of SD and SL for all species combined were 156 mm(-2) and 35 \u00b5m, respectively. SD was higher in trees (224 mm(-2)) than in shrubs (156 mm(-2)) or herbs (124 mm(-2)), and SL was largest in herbs (37 \u00b5m). SD was negatively correlated with SL in all species and PFTs (P < 0.01). The relationship between stomatal characteristics and elevation differed among PFTs. In trees, SD decreased and SL increased with elevation; in shrubs and herbs, SD initially increased and then decreased. Elevation-related differences in SL were not significant. PFT explained 7.20-17.6% of the total variation in SD and SL; the contributions of CO2 partial pressure (P CO2), precipitation, and soil water content (SWC) were weak (0.02-2.28%). Our findings suggest that elevation-related patterns of stomatal characteristics in leaves are primarily a function of PFT, and highlight the importance of differences among PFTs in modeling gas exchange in terrestrial ecosystems under global climate change.", "keywords": ["0106 biological sciences", "China", "Science", "Altitude", "Climate Change", "Q", "R", "Temperature", "Plants", "15. Life on land", "Adaptation", " Physiological", "01 natural sciences", "Quantitative Trait", " Heritable", "13. Climate action", "Plant Stomata", "Medicine", "Ecosystem", "Research Article"]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0115395"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0115395", "name": "item", "description": "10.1371/journal.pone.0115395", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0115395"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-12-17T00:00:00Z"}}, {"id": "10.1890/05-2074", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:20:42Z", "type": "Journal Article", "created": "2007-06-04", "title": "Regulation Of Benthic Algal And Animal Communities By Salt Marsh Plants: Impact Of Shading", "description": "Plant cover is a fundamental feature of many coastal marine and terrestrial systems and controls the structure of associated animal communities. Both natural and human-mediated changes in plant cover influence abiotic sediment properties and thus have cascading impacts on the biotic community. Using clipping (structural) and light (shading) manipulations in two salt marsh vegetation zones (one dominated by Spartina foliosa and one by Salicornia virginica), we tested whether these plant species exert influence on abiotic environmental factors and examined the mechanisms by which these changes regulate the biotic community. In an unshaded (plant and shade removal) treatment, marsh soils exhibited harsher physical properties, a microalgal community composition shift toward increased diatom dominance, and altered macrofaunal community composition with lower species richness, a larger proportion of insect larvae, and a smaller proportion of annelids, crustaceans, and oligochaetes compared to shaded (plant removal, shade mimic) and control treatment plots. Overall, the shaded treatment plots were similar to the controls. Plant cover removal also resulted in parallel shifts in microalgal and macrofaunal isotopic signatures of the most dynamic species. This suggests that animal responses are seen mainly among microalgae grazers and may be mediated by plant modification of microalgae. Results of these experiments demonstrate how light reduction by the vascular plant canopy can control salt marsh sediment communities in an arid climate. This research facilitates understanding of sequential consequences of changing salt marsh plant cover associated with climate or sea level change, habitat degradation, marsh restoration, or plant invasion.", "keywords": ["macrobenthos", "0106 biological sciences", "Conservation of Natural Resources", "Geologic Sediments", "abiotic properties", "Population Dynamics", "Chenopodiaceae", "Environment", "01 natural sciences", "Spartina foliosa", "stable isotope", "Animals", "Biomass", "14. Life underwater", "plant cover", "Ecosystem", "Plant Physiological Phenomena", "biodiversity", "pickleweed", "microalgae", "Eukaryota", "Biodiversity", "15. Life on land", "13. Climate action", "cordgrass", "Sunlight", "Salicornia virginica", "light"]}, "links": [{"href": "https://escholarship.org/content/qt09d6c3jf/qt09d6c3jf.pdf"}, {"href": "https://doi.org/10.1890/05-2074"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1890/05-2074", "name": "item", "description": "10.1890/05-2074", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1890/05-2074"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-04-01T00:00:00Z"}}, {"id": "10.1890/04-1724", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-06-23T16:20:42Z", "type": "Journal Article", "created": "2007-06-04", "title": "Elevated CO2 stimulates net accumulations of carbon and nitrogen in land ecosystems: A meta-analysis", "description": "The capability of terrestrial ecosystems to sequester carbon (C) plays a critical role in regulating future climatic change yet depends on nitrogen (N) availability. To predict long-term ecosystem C storage, it is essential to examine whether soil N becomes progressively limiting as C and N are sequestered in long-lived plant biomass and soil organic matter. A critical parameter to indicate the long-term progressive N limitation (PNL) is net change in ecosystem N content in association with C accumulation in plant and soil pools under elevated CO2. We compiled data from 104 published papers that study C and N dynamics at ambient and elevated CO2. The compiled database contains C contents, N contents, and C:N ratio in various plant and soil pools, and root:shoot ratio. Averaged C and N pool sizes in plant and soil all significantly increase at elevated CO2 in comparison to those at ambient CO2, ranging from a 5% increase in shoot N content to a 32% increase in root C content. The C and N contents in litter pools are consistently higher in elevated than ambient CO2 among all the surveyed studies whereas C and N contents in the other pools increase in some studies and decrease in other studies. The high variability in CO2-induced changes in C and N pool sizes results from diverse responses of various C and N processes to elevated CO2. Averaged C:N ratios are higher by 3% in litter and soil pools and 11% in root and shoot pools at elevated relative to ambient CO2. Elevated CO2 slightly increases root:shoot ratio. The net N accumulation in plant and soil pools at least helps prevent complete down-regulation of, and likely supports, long-term CO2 stimulation of C sequestration. The concomitant C and N accumulations in response to rising atmospheric CO2 may reflect intrinsic nature of ecosystem development as revealed before by studies of succession over hundreds to millions of years.", "keywords": ["Soil", "Nitrogen", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "Carbon Dioxide", "Plants", "15. Life on land", "Plant Roots", "Carbon", "Ecosystem", "Plant Physiological Phenomena", "Plant Shoots"]}, "links": [{"href": "https://doi.org/10.1890/04-1724"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1890/04-1724", "name": "item", "description": "10.1890/04-1724", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1890/04-1724"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-01-01T00:00:00Z"}}, {"id": "10.1890/07-1739.1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:20:42Z", "type": "Journal Article", "created": "2009-02-26", "title": "Climate And Soil-Age Constraints On Nutrient Uplift And Retention By Plants", "description": "<p>Plants and soils represent coevolving components of ecosystems, and while the effects of soils (e.g., nutrient availability) on plants have been extensively documented, the effect of plants on soils has received less attention. Furthermore there has been no systematic investigation of how plant effects vary across important ecological gradients in climate or soil age, which leaves a substantial gap in our understanding of how plant\uffe2\uff80\uff93soil systems develop. In this context, we analyzed changes in nutrient availability and elemental losses from the entire weathering zone at 35 sites arrayed across climatic and soil\uffe2\uff80\uff90age gradients on the island of Hawai\uffe2\uff80\uff98i. The sites are located on three basaltic lava flows (ages 10, 170, and 350 kyr) each of which crosses a precipitation gradient from \uffe2\uff88\uffbc500 to 2500 mm/yr. By comparing the loss of nutrient (potassium, phosphorus) and non\uffe2\uff80\uff90nutrient (e.g., sodium) rock\uffe2\uff80\uff90derived elements, we identify a climatic zone at intermediate rainfall where the retention of plant nutrients in the upper soil is most pronounced. We further show that there are several abiotic constraints on plant\uffe2\uff80\uff90driven retention of nutrients. At the dry sites (\uffe2\uff89\uffa4750 mm/yr on all three flows), plants slow the loss of nutrients, but the effect (as measured by the difference between K and Na losses) is small, perhaps because of low plant cover and productivity. At intermediate rainfall (750\uffe2\uff80\uff931400 mm/yr) but negative water balance, plants substantially enrich both nutrient cations and P relative to Na in the surface horizons, an effect that remains strong even after 350 kyr of soil development. In contrast, at high rainfall (\uffe2\uff89\uffa51500 mm/yr) and positive water balance, the effect of plants on nutrient distributions diminishes with soil age as leaching losses overwhelm the uplift and retention of nutrients by plants after 350 kyr of soil development. The effect of plants on soil nutrient distributions can also be mediated by the movement of iron (Fe), and substantial Fe losses at high rainfall on the older flows are highly correlated with P losses. Thus redox\uffe2\uff80\uff90driven redistribution of Fe may place a further abiotic constraint on nutrient retention by plants. In combination, these data indicate that the effects of soil aging on plant uplift and retention of nutrients differ markedly with precipitation, and we view this as a potentially fruitful area for future research.</p>", "keywords": ["Nitrogen", "Climate", "Rain", "Plant Development", "Phosphorus", "Volcanic Eruptions", "04 agricultural and veterinary sciences", "Plants", "15. Life on land", "01 natural sciences", "Hawaii", "Soil", "13. Climate action", "Potassium", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Ecosystem", "Plant Physiological Phenomena", "0105 earth and related environmental sciences"], "contacts": [{"organization": "Oliver A. Chadwick, Stephen Porder,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1890/07-1739.1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1890/07-1739.1", "name": "item", "description": "10.1890/07-1739.1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1890/07-1739.1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-03-01T00:00:00Z"}}, {"id": "10.2527/jas.2005-652", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:21:22Z", "type": "Journal Article", "created": "2006-08-05", "title": "Efficacy Of Ionophores In Cattle Diets For Mitigation Of Enteric Methane", "description": "Use of ionophores in cattle diets has been proposed as a strategy for mitigation of enteric CH4 emissions. Short- and long-term effects of feeding a single ionophore (monensin) or rotation of 2 ionophores (monensin and lasalocid) on enteric CH4 emissions were evaluated in 36 Angus yearling steers (328 +/- 24.9 kg of BW) over a 16-wk period. Steers were randomly assigned to 6 dietary treatments of 6 steers each. The 6 diets were low-concentrate without ionophore supplementation, low-concentrate with monensin supplementation, low-concentrate with a 2-wk rotation of monensin and lasalocid supplementation, high-concentrate without ionophore supplementation, high-concentrate with monensin supplementation, and high-concentrate with a 2-wk rotation of monensin and lasalocid supplementation. Daily enteric CH4 emissions, as measured using the SF(6) tracer gas technique, ranged from 54.7 to 369.3 L/steer daily. Supplementing ionophores decreased (P < 0.05) enteric CH4 emissions, expressed as liters per kilogram of DMI or percentage of GE intake, by 30% for the first 2 wk and by 27% for the first 4 wk, for cattle receiving the high-concentrate and low-concentrate diets, respectively. Cattle fed a rotation of ionophores did not (P > 0.05) exhibit a greater decrease and did not (P > 0.05) have a longer period of depressed enteric CH4 emissions compared with cattle receiving monensin only. Ionophore supplementation did not (P > 0.05) alter total ruminal fluid VFA concentration; however, the acetate:propionate ratio and ammonia-N concentration in ruminal fluid were decreased (P < 0.001) from the time that ionophores were introduced to the time they were removed from the diets. Both monensin and the rotation of monensin and lasalocid decreased (P < 0.001) total ciliate protozoal populations by 82.5% in the first 2 wk and by 76.8% in the first 4 wk during which they were supplemented in the high-concentrate and low-concentrate diets, respectively. Original ciliate protozoal populations were restored by the fourth and sixth week of supplementation when cattle were fed the high- or low-concentrate diets, respectively. No significant change was observed thereafter. These data suggest that the effects of ionophores on enteric CH(4) production are related to ciliate protozoal populations and that ciliate protozoal populations can adapt to the ionophores present in either low- or high-concentrate diets. Rotation of monensin and lasalocid did not (P > 0.05) prevent ciliate protozoal adaptation to ionophores.", "keywords": ["Male", "2. Zero hunger", "Lasalocid", "Time Factors", "Ionophores", "Drug Resistance", "0402 animal and dairy science", "Eukaryota", "04 agricultural and veterinary sciences", "Animal Feed", "Diet", "Gastrointestinal Tract", "Animals", "Animal Nutritional Physiological Phenomena", "Cattle", "Monensin", "Methane"], "contacts": [{"organization": "Denis Kraus\u00e9, K. M. Wittenberg, K. H. Ominski, H. Guan,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.2527/jas.2005-652"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Animal%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2527/jas.2005-652", "name": "item", "description": "10.2527/jas.2005-652", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2527/jas.2005-652"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-07-01T00:00:00Z"}}, {"id": "10.3168/jds.2010-3154", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:21:27Z", "type": "Journal Article", "created": "2010-11-13", "title": "A High Dose Of Monensin Does Not Reduce Methane Emissions Of Dairy Cows Offered Pasture Supplemented With Grain", "description": "The primary objective of our research was to determine the effect of a high dose of monensin supplementation on enteric CH(4) emissions of dairy cows offered a ryegrass pasture diet supplemented with grain. An additional objective was to evaluate effects on milk production and rumen function, because a commensurate improvement in milk production could lead to adoption of monensin as a profitable strategy for methane abatement. Two experiments were conducted (grazing and respiratory chambers) and in both experiments monensin (471 mg/d) was topdressed on 4 kg (dry matter)/d of rolled barley grain offered in a feed trough twice daily at milking times. In the grazing experiment, 50 Holstein-Friesian cows were assigned randomly to 1 of 2 groups (control or monensin). Cows grazed together as a single herd on a predominantly ryegrass sward and received monensin over a 12-wk period, during which time measurements of milk production and body weight change were made. The SF(6) tracer technique was used to estimate methane production of 30 of the 50 cows (15 control cows and 15 monensin cows) for 3 consecutive days in wk 3, 5, 8, and 12 of treatment. Samples of rumen fluid were collected per fistula from 8 of the 50 cows (4 per diet) on 2 consecutive days in wk 3, 5, 8, and 12 of treatment and analyzed for volatile fatty acids and ammonia-N. In the metabolic chamber experiment, 10 pairs of lactating dairy cows (control and monensin) were used to determine the effects of monensin on methane emissions, dry matter intake, milk production, and body weight change over a 10-wk period. Methane emissions were measured by placing cows in respiration chambers for 2 d at wk 5 and 10 of treatment. Cows received fresh ryegrass pasture harvested daily. Monensin did not affect methane production in either the grazing experiment (g/d, g/kg of milk) or the chamber experiment (g/d, g/kg of dry matter intake, g/kg of milk). In both experiments, milk production did not increase with addition of monensin to the diet. Monensin had no effect on body weight changes in either experiment. Monensin did not affect volatile fatty acids or ammonia-N in rumen fluid, but the acetate to propionate ratio tended to decrease. Monensin did not improve milk production of grazing dairy cows and no effect on enteric methane emissions was observed, indicating that monensin cannot be promoted as a viable mitigation strategy for dairy cows grazing ryegrass pasture supplemented with grain.", "keywords": ["2. Zero hunger", "Rumen", "0402 animal and dairy science", "04 agricultural and veterinary sciences", "Milk", "13. Climate action", "Dietary Supplements", "Lolium", "Animals", "Lactation", "Animal Nutritional Physiological Phenomena", "Cattle", "Female", "Monensin", "Edible Grain", "Methane"], "contacts": [{"organization": "C. Grainger, Murray C. Hannah, Richard Eckard, Roderick P.W. Williams,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.3168/jds.2010-3154"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Dairy%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3168/jds.2010-3154", "name": "item", "description": "10.3168/jds.2010-3154", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3168/jds.2010-3154"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-11-01T00:00:00Z"}}, {"id": "10.3168/jds.2010-3281", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:21:27Z", "type": "Journal Article", "created": "2010-11-21", "title": "Nitrate And Sulfate: Effective Alternative Hydrogen Sinks For Mitigation Of Ruminal Methane Production In Sheep", "description": "Twenty male crossbred Texel lambs were used in a 2 \u00d7 2 factorial design experiment to assess the effect of dietary addition of nitrate (2.6% of dry matter) and sulfate (2.6% of dry matter) on enteric methane emissions, rumen volatile fatty acid concentrations, rumen microbial composition, and the occurrence of methemoglobinemia. Lambs were gradually introduced to nitrate and sulfate in a corn silage-based diet over a period of 4 wk, and methane production was subsequently determined in respiration chambers. Diets were given at 95% of the lowest ad libitum intake observed within one block in the week before methane yield was measured to ensure equal feed intake of animals between treatments. All diets were formulated to be isonitrogenous. Methane production decreased with both supplements (nitrate: -32%, sulfate: -16%, and nitrate+sulfate: -47% relative to control). The decrease in methane production due to nitrate feeding was most pronounced in the period immediately after feeding, whereas the decrease in methane yield due to sulfate feeding was observed during the entire day. Methane-suppressing effects of nitrate and sulfate were independent and additive. The highest methemoglobin value observed in the blood of the nitrate-fed animals was 7% of hemoglobin. When nitrate was fed in combination with sulfate, methemoglobin remained below the detection limit of 2% of hemoglobin. Dietary nitrate decreased heat production (-7%), whereas supplementation with sulfate increased heat production (+3%). Feeding nitrate or sulfate had no effects on volatile fatty acid concentrations in rumen fluid samples taken 24h after feeding, except for the molar proportion of branched-chain volatile fatty acids, which was higher when sulfate was fed and lower when nitrate was fed, but not different when both products were included in the diet. The total number of rumen bacteria increased as a result of sulfate inclusion in the diet. The number of methanogens was reduced when nitrate was fed. Enhanced levels of sulfate in the diet increased the number of sulfate-reducing bacteria. The number of protozoa was not affected by nitrate or sulfate addition. Supplementation of a diet with nitrate and sulfate is an effective means for mitigating enteric methane emissions from sheep.", "keywords": ["Male", "Rumen", "reduction", "in-vitro", "nitrogen", "Random Allocation", "fumaric-acid", "Animals", "Intestinal Mucosa", "real-time pcr", "2. Zero hunger", "rumen", "Nitrates", "Sheep", "Sulfates", "emissions", "0402 animal and dairy science", "methanogenesis", "04 agricultural and veterinary sciences", "Hydrogen-Ion Concentration", "Fatty Acids", " Volatile", "Diet", "Agricultural Land Management", "cattle", "Dietary Supplements", "Fermentation", "Animal Nutritional Physiological Phenomena", "feed-intake", "Methemoglobinemia", "Methane"]}, "links": [{"href": "https://doi.org/10.3168/jds.2010-3281"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Dairy%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3168/jds.2010-3281", "name": "item", "description": "10.3168/jds.2010-3281", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3168/jds.2010-3281"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-12-01T00:00:00Z"}}, {"id": "10.3168/jds.2010-4042", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:21:27Z", "type": "Journal Article", "created": "2011-05-25", "title": "Dietary Inclusion Of Diallyl Disulfide, Yucca Powder, Calcium Fumarate, An Extruded Linseed Product, Or Medium-Chain Fatty Acids Does Not Affect Methane Production In Lactating Dairy Cows", "description": "Two similar experiments were conducted to assess the effect of diallyl disulfide (DADS), yucca powder (YP), calcium fumarate (CAFU), an extruded linseed product (UNSAT), or a mixture of capric and caprylic acid (MCFA) on methane production, energy balance, and dairy cow performance. In experiment 1, a control diet (CON1) and diets supplemented with 56 mg of DADS/kg of dry matter (DM), 3g of YP/kg of DM, or 25 g of CAFU/kg of DM were evaluated. In experiment 2, an inert saturated fat source in the control diet (CON2) was exchanged isolipidically for an extruded linseed source (100g/kg of DM; UNSAT) or a mixture of C8:0 and C10:0 (MCFA; 20.3g/kg of DM). In experiment 2, a higher inclusion level of DADS (200mg/kg of DM) was also tested. Both experiments were conducted using 40 lactating Holstein-Friesian dairy cows. Cows were adapted to the diet for 12 d and were subsequently kept in respiration chambers for 5 d to evaluate methane production, diet digestibility, energy balance, and animal performance. Feed intake was restricted to avoid confounding effects of possible differences in ad libitum feed intake on methane production. Feed intake was, on average, 17.5 and 16.6 kg of DM/d in experiments 1 and 2, respectively. None of the additives reduced methane production in vivo. Methane production in experiment 1 was 450, 453, 446, and 423 g/d for CON1 and the diets supplemented with DADS, YP, and CAFU, respectively. In experiment 2, methane production was 371, 394, 388, and 386 g/d for CON2 and the diets supplemented with UNSAT, MCFA, and DADS, respectively. No effects of the additives on energy balance or neutral detergent fiber digestibility were observed. The addition of MCFA increased milk fat content (5.38% vs. 4.82% for control) and fat digestibility (78.5% vs. 59.8% for control), but did not affect milk yield or other milk components. The other products did not affect milk yield or composition. Results from these experiments emphasize the need to confirm methane reductions observed in vitro with in vivo data.", "keywords": ["production in-vitro", "ruminal fermentation", "0404 agricultural biotechnology", "linolenic acids", "rumen microbial fermentation", "Fumarates", "Flax", "Yucca", "Animals", "Lactation", "schidigera", "Disulfides", "essential oils", "beef-cattle", "2. Zero hunger", "garlic oil", "0402 animal and dairy science", "04 agricultural and veterinary sciences", "Diet", "Allyl Compounds", "Milk", "Dietary Supplements", "Animal Nutritional Physiological Phenomena", "Cattle", "Digestion", "Female", "Caprylates", "Energy Metabolism", "metabolism", "Decanoic Acids", "Methane", "metaanalysis"]}, "links": [{"href": "https://doi.org/10.3168/jds.2010-4042"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Dairy%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3168/jds.2010-4042", "name": "item", "description": "10.3168/jds.2010-4042", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3168/jds.2010-4042"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-06-01T00:00:00Z"}}, {"id": "10.2527/2005.831182x", "type": "Feature", "geometry": null, "properties": {"license": "unspecified", "updated": "2026-06-23T16:21:22Z", "type": "Journal Article", "created": "2016-08-09", "description": "The objective of this study was to compare methane emission by goats consuming the condensed tannin-containing forage sericea lespedeza (Les-pedeza cuneata) or a mixture of crabgrass (Digitaria ischaemum) and Kentucky 31 tall fescue (Festuca arundinacea). Two groups of 12 Angora does (initial average BW = 41.5 +/- 2.7 kg) that previously grazed a pasture of sericea lespedeza or crabgrass/tall fescue for approximately 4 mo were used. After 1 wk of adaptation to metabolism cages, gas exchange was measured for 24 h in an open-circuit respiration calorimetry system with four head boxes. Forage harvested daily from the previously grazed pastures was consumed ad libitum. Crude protein concentration was 10.3 and 13.0%, IVDMD was 64.5 and 75.3%, and the level of condensed tannins was 17.7 and 0.5% for sericea lespedeza and crabgrass/tall fescue, respectively. Dry matter intake (1.11 vs. 0.67 kg/d) and digestible DMI (estimated from IVDMD; 0.71 vs. 0.51 kg/d) were greater (P < 0.01) for sericea lespedeza than for crabgrass/tall fescue. Ruminal ammonia N (3.7 and 9.9 mg/dL; P < 0.001) and plasma urea-N concentrations (16.7 and 20.9 mg/dL; P = 0.07) were lower for sericea lespedeza than for crabgrass/tall fescue. Concentrations of individual and total VFA and the acetate-to-propionate ratio in ruminal fluid did not differ between treatments (P > 0.19). Despite higher DMI by goats fed sericea lespedeza, daily energy expenditure (409 vs. 431 kJ/kg BW(0.75)), heart rate (70 vs. 73 beats/min), and the ratio of energy expenditure to heart rate (5.82 vs. 5.94) did not differ between sericea lespedeza and crabgrass/tall fescue, respectively (P > 0.13). Methane emission expressed as both quantity per day or relative to DMI was lower (P <0.001) for sericea lespedeza than for crabgrass/tall fescue (7.4 vs. 10.6 g/d and 6.9 vs. 16.2 g/kg DMI). Substantial differences between the forages in condensed tannins concentration and methane emission by Angora goats suggest that condensed tannins decreased methane emission.", "keywords": ["Festuca", "2. Zero hunger", "Rumen", "Pulmonary Gas Exchange", "Goats", "Body Weight", "0402 animal and dairy science", "Lespedeza", "04 agricultural and veterinary sciences", "Fatty Acids", " Volatile", "Animal Feed", "Blood Urea Nitrogen", "Eating", "Ammonia", "13. Climate action", "Digitaria", "Animals", "Animal Nutritional Physiological Phenomena", "Female", "Proanthocyanidins", "Methane"]}, "links": [{"href": "https://doi.org/10.2527/2005.831182x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Animal%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2527/2005.831182x", "name": "item", "description": "10.2527/2005.831182x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2527/2005.831182x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-01-01T00:00:00Z"}}, {"id": "10.2527/jas.2007-0774", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-06-23T16:21:22Z", "type": "Journal Article", "created": "2008-05-09", "title": "Methane Output And Diet Digestibility In Response To Feeding Dairy Cows Crude Linseed, Extruded Linseed, Or Linseed Oil", "description": "This experiment studied the effect of 3 forms of presentation of linseed fatty acids (FA) on methane output using the sulfur hexafluoride tracer technique, total tract digestibility, and performance of dairy cows. Eight multiparous lactating Holstein cows (initial milk yield 23.4 +/- 2.2 kg/d) were assigned to 4 dietary treatments in a replicated 4 x 4 Latin square design: a control diet (C) consisting of corn silage (59%), grass hay (6%), and concentrate (35%) and the same diet with crude linseed (CLS), extruded linseed (ELS), or linseed oil (LSO) at the same FA level (5.7% of dietary DM). Each experimental period lasted 4 wk. All the forms of linseed FA significantly decreased daily CH(4) emissions (P < 0.001) but to different extents (-12% with CLS, -38% with ELS, -64% with LSO) compared with C. The same ranking among diets was observed for CH(4) output expressed as a percentage of energy intake (P < 0.001) or in grams per kilogram of OM intake (P < 0.001). Methane production per unit of digested NDF was similar for C, CLS, and ELS but was less for LSO (138 vs. 68 g/kg of digested NDF, respectively; P < 0.001). Measured as grams per kilogram of milk or fat-corrected milk yield, methane emission was similar for C and CLS and was less for ELS and LSO (P < 0.001), LSO being less than ELS (P < 0.01). Total tract NDF digestibility was significantly less (P < 0.001) for the 3 supplemented diets than for C (-6.8% on average; P < 0.001). Starch digestibility was similar for all diets (mean 93.5%). Compared with C, DMI was not modified with CLS (P > 0.05) but was decreased with ELS and LSO (-3.1 and -5.1 kg/d, respectively; P < 0.001). Milk yield and milk fat content were similar for LSO and ELS but less than for C and CLS (19.9 vs. 22.3 kg/d and 33.8 vs. 43.2 g/kg, on average, respectively; P < 0.01 and P < 0.001). Linseed FA offer a promising dietary means to depress ruminal methanogenesis. The form of presentation of linseed FA greatly influences methane output from dairy cows. The negative effects of linseed on milk production will need to be overcome if it is to be considered as a methane mitigation agent. Optimal conditions for the utilization of linseed FA in ruminant diets need to be determined before recommending its use for the dairy industry.", "keywords": ["DAIRY COW", "Linseed Oil", "LINSEED OIL", "630", "0403 veterinary science", "METHANE", "DIGESTION", "Flax", "LINSEED", "Animals", "Lactation", "[SDV.SA.SPA] Life Sciences [q-bio]/Agricultural sciences/Animal production studies", "2. Zero hunger", "0402 animal and dairy science", "Feeding Behavior", "04 agricultural and veterinary sciences", "Animal Feed", "Diet", "Dairying", "Milk", "[SDV.SA.SPA]Life Sciences [q-bio]/Agricultural sciences/Animal production studies", "FATTY ACID", "Animal Nutritional Physiological Phenomena", "Cattle", "Digestion", "Female", "Methane"], "contacts": [{"organization": "Yves Chilliard, Christine Martin, J. Rouel, Jean-Pierre Jouany, Michel Doreau,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.2527/jas.2007-0774"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Animal%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2527/jas.2007-0774", "name": "item", "description": "10.2527/jas.2007-0774", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2527/jas.2007-0774"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-10-01T00:00:00Z"}}, {"id": "10.2527/jas.2011-4209", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:21:23Z", "type": "Journal Article", "created": "2012-01-28", "title": "Dietary Nitrate Supplementation Reduces Methane Emission In Beef Cattle Fed Sugarcane-Based Diets", "description": "The objective of this study was to determine the effect of dietary nitrate on methane emission and rumen fermentation parameters in Nellore \u00d7 Guzera (Bos indicus) beef cattle fed a sugarcane based diet. The experiment was conducted with 16 steers weighing 283 \u00b1 49 kg (mean \u00b1 SD), 6 rumen cannulated and 10 intact steers, in a cross-over design. The animals were blocked according to BW and presence or absence of rumen cannula and randomly allocated to either the nitrate diet (22 g nitrate/kg DM) or the control diet made isonitrogenous by the addition of urea. The diets consisted of freshly chopped sugarcane and concentrate (60:40 on DM basis), fed as a mixed ration. A 16-d adaptation period was used to allow the rumen microbes to adapt to dietary nitrate. Methane emission was measured using the sulfur hexafluoride tracer technique. Dry matter intake (P = 0.09) tended to be less when nitrate was present in the diet compared with the control, 6.60 and 7.05 kg/d DMI, respectively. The daily methane production was reduced (P < 0.01) by 32% when steers were fed the nitrate diet (85 g/d) compared with the urea diet (125 g/d). Methane emission per kilogram DMI was 27% less (P < 0.01) on the nitrate diet (13.3 g methane/kg DMI) than on the control diet (18.2 g methane/kg DMI). Methane losses as a fraction of gross energy intake (GEI) were less (P < 0.01) on the nitrate diet (4.2% of GEI) than on the control diet (5.9% of GEI). Nitrate mitigated enteric methane production by 87% of the theoretical potential. The rumen fluid ammonia-nitrogen (NH(3)-N()) concentration was significantly greater (P < 0.05) for the nitrate diet. The total concentration of VFA was not affected (P = 0.61) by nitrate in the diet, while the proportion of acetic acid tended to be greater (P = 0.09), propionic acid less (P = 0.06) and acetate/propionate ratio tended to be greater (P = 0.06) for the nitrate diet. Dietary nitrate reduced enteric methane emission in beef cattle fed sugarcane based diet.", "keywords": ["sheep", "Rumen", "Sulfur Hexafluoride", "urea", "mitigation", "Ammonia", "Animals", "Urea", "wall", "nitrite", "2. Zero hunger", "Cross-Over Studies", "Nitrates", "0402 animal and dairy science", "methanogenesis", "04 agricultural and veterinary sciences", "Animal Feed", "Diet", "Saccharum", "livestock", "rumen fermentation", "13. Climate action", "manipulation", "Dietary Supplements", "dairy", "Animal Nutritional Physiological Phenomena", "Cattle", "Methane"]}, "links": [{"href": "https://doi.org/10.2527/jas.2011-4209"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Animal%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2527/jas.2011-4209", "name": "item", "description": "10.2527/jas.2011-4209", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2527/jas.2011-4209"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-07-01T00:00:00Z"}}, {"id": "10.3390/cells9092026", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:21:40Z", "type": "Journal Article", "created": "2020-09-03", "title": "Chemical Genetics Approach Identifies Abnormal Inflorescence Meristem 1 as a Putative Target of a Novel Sulfonamide That Protects Catalase2-Deficient Arabidopsis against Photorespiratory Stress", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Alterations of hydrogen peroxide (H2O2) levels have a profound impact on numerous signaling cascades orchestrating plant growth, development, and stress signaling, including programmed cell death. To expand the repertoire of known molecular mechanisms implicated in H2O2 signaling, we performed a forward chemical screen to identify small molecules that could alleviate the photorespiratory-induced cell death phenotype of Arabidopsisthaliana mutants lacking H2O2-scavenging capacity by peroxisomal catalase2. Here, we report the characterization of pakerine, an m-sulfamoyl benzamide from the sulfonamide family. Pakerine alleviates the cell death phenotype of cat2 mutants exposed to photorespiration-promoting conditions and delays dark-induced senescence in wild-type Arabidopsis leaves. By using a combination of transcriptomics, metabolomics, and affinity purification, we identified abnormal inflorescence meristem 1 (AIM1) as a putative protein target of pakerine. AIM1 is a 3-hydroxyacyl-CoA dehydrogenase involved in fatty acid \u03b2-oxidation that contributes to jasmonic acid (JA) and salicylic acid (SA) biosynthesis. Whereas intact JA biosynthesis was not required for pakerine bioactivity, our results point toward a role for \u03b2-oxidation-dependent SA production in the execution of H2O2-mediated cell death.</p></article>", "keywords": ["EXPRESSION", "0106 biological sciences", "0301 basic medicine", "photorespiration", "Cell Respiration", "Meristem", "Arabidopsis", "Cyclopentanes", "catalase2-deficient <i>Arabidopsis</i>", "01 natural sciences", "Article", "ACTIVATION", "catalase2-deficient Arabidopsis", "03 medical and health sciences", "HYDROGEN-PEROXIDE", "Hydroponics", "Gene Expression Regulation", " Plant", "Multienzyme Complexes", "Stress", " Physiological", "Plant Cells", "SALICYLIC-ACID BIOSYNTHESIS", "H<sub>2</sub>O<sub>2</sub> signaling", "Medicine and Health Sciences", "abnormal inflorescence meristem 1", "LEAF SENESCENCE", "Oxylipins", "Photosynthesis", "2. Zero hunger", "QH573-671", "Cell Death", "Arabidopsis Proteins", "Gene Expression Profiling", "Biology and Life Sciences", "Computational Biology", "Hydrogen Peroxide", "ARABIDOPSIS", "MULTIFUNCTIONAL PROTEIN", "3. Good health", "PEROXISOMAL BETA-OXIDATION", "Plant Leaves", "chemical genetics", "CELL-DEATH", "PHENYLALANINE AMMONIA-LYASE", "Seeds", "Cytology", "Salicylic Acid", "H2O2 signaling", "Signal Transduction"]}, "links": [{"href": "http://www.mdpi.com/2073-4409/9/9/2026/pdf"}, {"href": "https://doi.org/10.3390/cells9092026"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Cells", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/cells9092026", "name": "item", "description": "10.3390/cells9092026", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/cells9092026"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-09-02T00:00:00Z"}}, {"id": "10.3390/ijms26020673", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:21:44Z", "type": "Journal Article", "created": "2025-01-15", "title": "Biofilm Formation, Modulation, and Transcriptomic Regulation Under Stress Conditions in Halomicronema sp.", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>In nature, bacteria often form heterogeneous communities enclosed in a complex matrix known as biofilms. This extracellular matrix, produced by the microorganisms themselves, serves as the first barrier between the cells and the environment. It is composed mainly of water, extracellular polymeric substances (EPS), lipids, proteins, and DNA. Cyanobacteria form biofilms and have unique characteristics such as oxygenic photosynthesis, nitrogen fixation, excellent adaptability to various abiotic stress conditions, and the ability to secrete a variety of metabolites and hormones. This work focused on the characterization of the cyanobacterium Halomicronema sp. strain isolated from a brackish environment. This study included microscopic imaging, determination of phenolic content and antioxidant capacity, identification of chemicals interfering with biofilm formation, and transcriptomic analysis by RNA sequencing and real-time PCR. Gene expression analysis was centered on genes related to the production of EPS and biofilm-related transcription factors. This study led to the identification of wza1 and wzt as EPS biomarkers and luxR-05665, along with genes belonging to the TetR/AcrR and LysR families, as potential biomarkers useful for studying and monitoring biofilm formation under different environmental conditions. Moreover, this work revealed that Halomicronema sp. can grow even in the presence of strong abiotic stresses, such as high salt, and has good antioxidant properties.</p></article>", "keywords": ["570", "Extracellular Polymeric Substance Matrix", "Gene Expression Profiling", "Gene Expression Regulation", " Bacterial", "stress resilience", "Cyanobacteria", "cyanobacteria", "Article", "transcriptomics", "Bacterial Proteins", "Halomicronema sp", "Stress", " Physiological", "Biofilms", "biofilm formation", "EPS", "Transcriptome"], "contacts": [{"organization": "Marina Caldara, Henk Bolhuis, Marta Marmiroli, Nelson Marmiroli,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.3390/ijms26020673"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/International%20Journal%20of%20Molecular%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/ijms26020673", "name": "item", "description": "10.3390/ijms26020673", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/ijms26020673"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-01-15T00:00:00Z"}}, {"id": "10.3732/ajb.1300163", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:22:00Z", "type": "Journal Article", "created": "2013-11-19", "title": "Soil Nitrogen, And Not Phosphorus, Promotes Cluster-Root Formation In A South American Proteaceae, Embothrium Coccineum", "description": "<p>\uffe2\uff80\uffa2 Premise of the study: Cluster roots are a characteristic root adaptation of Proteaceae species. In South African and Australian species, cluster roots promote phosphorus (P) acquisition from poor soils. In a South American Proteaceae species, where cluster roots have been scarcely studied and their function is unknown, we tested whether cluster\uffe2\uff80\uff90root formation is stimulated by low soil nutrition, in particular low P\uffe2\uff80\uff90availability.</p><p>\uffe2\uff80\uffa2 Methods: Small and large seedlings (&lt; 6\uffe2\uff80\uff90 and &gt; 6\uffe2\uff80\uff90months old, respectively) of Embothrium coccineum and soil were collected across four different sites in Patagonia (Chile). We determined cluster\uffe2\uff80\uff90root number and relative mass, and leaf Pi concentration per mass (Pimass) and per area (Piarea) for each seedling, and tested relationships with Olsen\uffe2\uff80\uff93P (OP), sorbed\uffe2\uff80\uff93P (sP) and total nitrogen (N) using generalized linear mixed\uffe2\uff80\uff90effects models and model selection to assess the relative strength of soil and plant drivers.</p><p>\uffe2\uff80\uffa2 Key results: Best\uffe2\uff80\uff90fit models showed a negative logarithmic relationship between cluster\uffe2\uff80\uff90root number and soil nitrogen (N), and between cluster\uffe2\uff80\uff90root relative mass and both leaf Piarea and soil N, and a positive logarithmic relationship between cluster\uffe2\uff80\uff90root number and leaf Piarea. Cluster\uffe2\uff80\uff90root relative mass was higher in small than in large seedlings.</p><p>\uffe2\uff80\uffa2 Conclusions: Contrary to that found in South African and Australian Proteaceae, cluster roots of E. coccineum do not appear to be driven by soil P, but rather by soil N and leaf Piarea. We suggest that cluster roots are a constitutive and functional trait that allows plants to prevail in poor N soils.</p>", "keywords": ["Plant Leaves", "0106 biological sciences", "2. Zero hunger", "Soil", "Nitrogen", "Seedlings", "Phosphorus", "Chile", "15. Life on land", "Adaptation", " Physiological", "Plant Roots", "01 natural sciences", "Proteaceae"]}, "links": [{"href": "https://doi.org/10.3732/ajb.1300163"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/American%20Journal%20of%20Botany", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3732/ajb.1300163", "name": "item", "description": "10.3732/ajb.1300163", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3732/ajb.1300163"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-12-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=+Physiological&offset=50&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=+Physiological&offset=50&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "prev", "title": "items (prev)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=+Physiological&offset=0", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=+Physiological&offset=100", "hreflang": "en-US"}], "numberMatched": 142, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-06-24T04:24:49.910720Z"}