{"type": "FeatureCollection", "features": [{"id": "10.1002/ajb2.1625", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:13:51Z", "type": "Journal Article", "created": "2021-03-19", "title": "Phylogeography of a gypsum endemic plant across its entire distribution range in the western Mediterranean", "description": "PREMISE<p>Gypsum soils in the Mediterranean Basin house large numbers of edaphic specialists that are adapted to stressful environments. The evolutionary history and standing genetic variation of these taxa have been influenced by the geological and paleoclimatic complexity of this area and the long\uffe2\uff80\uff90standing effect of human activities. However, little is known about the origin of Mediterranean gypsophiles and the factors affecting their genetic diversity and population structure.</p>METHODS<p>Using phylogenetic and phylogeographic approaches based on microsatellites and sequence data from nuclear and chloroplast regions, we evaluated the divergence time, genetic diversity, and population structure of 27 different populations of the widespread Iberian gypsophile Lepidium subulatum throughout its entire geographic range.</p>RESULTS<p>Lepidium subulatum diverged from its nearest relatives ~3 million years ago, and ITS and psbA/matK trees supported the monophyly of the species. These results suggest that both geological and climatic changes in the region around the Plio\uffe2\uff80\uff90Pleistocene promoted its origin, compared to other evolutionary processes. We found high genetic diversity in both nuclear and chloroplast markers, but a greater population structure in the chloroplast data. These results suggest that while seed dispersal is limited, pollen flow may be favored by the presence of numerous habitat patches that enhance the movement of pollinators.</p>CONCLUSIONS<p>Despite being an edaphic endemic, L. subulatum possesses high genetic diversity probably related to its relatively old age and high population sizes across its range. Our study highlights the value of using different markers to fully understand the phylogeographic history of plant species.</p", "keywords": ["0301 basic medicine", "Phylogeography", "0303 health sciences", "03 medical and health sciences", "Haplotypes", "DNA", " Chloroplast", "Genetic Variation", "cpDNA; genetic diversity; gypsophiles; Lepidium subulatum; nuclear microsatellites; phylogeography; pollen flow; population structure; seed dispersal.", "15. Life on land", "Calcium Sulfate", "Phylogeny"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/ajb2.1625"}, {"href": "https://doi.org/10.1002/ajb2.1625"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/American%20Journal%20of%20Botany", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ajb2.1625", "name": "item", "description": "10.1002/ajb2.1625", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ajb2.1625"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-01T00:00:00Z"}}, {"id": "10.1007/bf00055429", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:07Z", "type": "Journal Article", "created": "2004-11-04", "title": "Leucaena Plus Maize Alley Cropping In Malawi .2. Residual P And Leaf Management Effects On Maize Nutrition And Soil Properties", "description": "Agroforestry systems involving leaf removal for animal fodder may result in rapid depletion of soil fertility. The purpose of this research was to determine if the effects of leaf removal on soil fertility parameters and maize yield in a Leucaena leucocephala alley cropping system could be reversed. Three leaf management strategies in a Leucaena alley cropping trial that had been in effect from 1987 to 1991 were investigated: 1) leaves returned, 2) leaves removed, and 3) leaves removed, with 100 kg inorganic N ha\u22121 added. In the 1990/91 season, a 34 confounded factorial design was utilized to investigate the effects of leaf management strategy, N rate (0, 30 and 60 kg N ha\u22121); maize plant population (14,800, 29,600, and 44,400 plants ha\u22121); and P rate (0, 18, and 35 kg P ha\u22121). In the 1991/92 and 1992/93 seasons, leaves were applied equally to all plots, and no P was applied. The N rate and plant population treatments were continued, and the same confounded factorial design was implemented to investigate residual leaf management strategy, residual P rate, n rate, and plant population. The yield gap between the plots where leaves had been returned vs. removed narrowed each season due to uniform leaf application. Application of N improved yields during both seasons. Residual effects of the initial P application decreased to only 10% of the total yield in 1992/93. Plant population affected yields only during the season of very good rainfall. Leaf additions resulted in a relative increase in soil pH, total N,and exchangeable Ca, Mg, and K and a decrease C/N ratio in plots that had not previously received leaves. Leaves supplied more K and Zn to the upper 15 cm of soil than were being extracted by the maize crop, but uniform leaf additions eliminated differences in K and Zn uptake. Plant Zn uptake decreased with increasing P rate and plant population, and increased with increasing N rate and a history of leaf return. The results show that applying leaves equilibrated yields within two seasons, and resulted in a relative improvement of several soil properties. The residual effect from P applications was not adequate to maximize yields.", "keywords": ["alley cropping", "2. Zero hunger", "leucaena leucocephala", "soil fertility", "agroforestry systems", "yields", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "maize", "plant population", "6. Clean water"], "contacts": [{"organization": "Wendt, J.W., Jones, R.B., Bunderson, W.T., Itimu, A.O.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/bf00055429"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agroforestry%20Systems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/bf00055429", "name": "item", "description": "10.1007/bf00055429", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/bf00055429"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1996-03-01T00:00:00Z"}}, {"id": "10.1007/s00374-011-0539-3", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:18Z", "type": "Journal Article", "created": "2011-01-18", "title": "Effects Of Organic And Inorganic Fertilization On Soil Bacterial And Fungal Microbial Diversity In The Kabete Long-Term Trial, Kenya", "description": "The effects of crop manure and inorganic fertilizers on composition of microbial communities of central high land soils of Kenya are poorly known. For this reason, we have carried out a thirty-two-year-old long-term trial in Kabete, Kenya. These soils were treated with organic (maize stover (MS) at 10 t ha\u22121, farmyard manure (FYM) at 10 t ha\u22121) and inorganic fertilizers 120 kg N, 52.8 kg P (N2P2), N2P2 + MS, N2P2 + FYM, a control, and a fallow for over 30 years. We examined 16S rRNA gene and 28S rRNA gene fingerprints of bacterial and fungal diversity by PCR amplification and denaturing gradient gel electrophoresis separation, respectively. The PCR bacterial community structure and diversity were negatively affected by N2P2 and were more closely related to the bacterial structure in the soils without any addition (control) than that of soils with a combination of inorganic and organic or inorganic fertilizers alone. The effect on fungal diversity by N2P2 was different than the effect on bacterial diversity since the fungal diversity was similar to that of the N2P2 + FYM and N2P2 + MS-treated. However, soils treated with organic inputs clustered away from soils amended with inorganic inputs. Organic inputs had a positive effect on both bacterial and fungal diversity with or without chemical fertilizers. Results from this study suggested that total diversity of bacterial and fungal communities was closely related to agro-ecosystem management practices and may partially explain the yield differences observed between the different treatments.", "keywords": ["[SDV.SA]Life Sciences [q-bio]/Agricultural sciences", "Microbial diversity", "soil microorganisms", "engrais organique", "http://aims.fao.org/aos/agrovoc/c_27870", "Organic and inorganic amendments", "F08 - Syst\u00e8mes et modes de culture", "rendement des cultures", "630", "fertilisation", "biodiversit\u00e9", "http://aims.fao.org/aos/agrovoc/c_4592", "http://aims.fao.org/aos/agrovoc/c_36669", "http://aims.fao.org/aos/agrovoc/c_2018", "inorganic fertilizers", "http://aims.fao.org/aos/agrovoc/c_10795", "http://aims.fao.org/aos/agrovoc/c_34326", "fertility", "2. Zero hunger", "[SDV.SA] Life Sciences [q-bio]/Agricultural sciences", "http://aims.fao.org/aos/agrovoc/c_33949", "g\u00e9n\u00e9tique des populations", "04 agricultural and veterinary sciences", "agro\u00e9cosyst\u00e8me", "6. Clean water", "fertilit\u00e9 du sol", "PCR", "http://aims.fao.org/aos/agrovoc/c_34079", "polymerization", "community structure", "abonos inorg\u00e1nicos", "management", "570", "http://aims.fao.org/aos/agrovoc/c_7170", "http://aims.fao.org/aos/agrovoc/c_7172", "flore microbienne", "soil", "http://aims.fao.org/aos/agrovoc/c_36167", "micro-organisme du sol", "http://aims.fao.org/aos/agrovoc/c_10176", "organic fertilizers", "abonos org\u00e1nicos", "pratique culturale", "microorganismos del suelo", "suelo", "flore du sol", "P35 - Fertilit\u00e9 du sol", "P34 - Biologie du sol", "polimerizaci\u00f3n", "15. Life on land", "engrais min\u00e9ral", "http://aims.fao.org/aos/agrovoc/c_16367", "http://aims.fao.org/aos/agrovoc/c_4086", "0401 agriculture", " forestry", " and fisheries", "F04 - Fertilisation"]}, "links": [{"href": "https://doi.org/10.1007/s00374-011-0539-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biology%20and%20Fertility%20of%20Soils", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00374-011-0539-3", "name": "item", "description": "10.1007/s00374-011-0539-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00374-011-0539-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-01-19T00:00:00Z"}}, {"id": "10.1007/s003740050505", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:21Z", "type": "Journal Article", "created": "2002-08-25", "title": "Effects Of Trefoil Cover Crop And Earthworm Inoculation On Maize Crop And Soil Organisms In Reunion Island", "description": "Traditional tree fallows have been abandoned on the western coast of the Reunion Island because of the increasing need for cultivated land. Soil fertility is no longer restored and crop yields have decreased drastically. The leguminous plant, Lotus uliginosus (trefoil), used as a cover crop, has made possible the control of erosion, the restoration of soil macrofauna, especially earthworms, and the increase in crop yields. When trefoil was associated with earthworms (Amynthas corticis), the densities of maize, the yields of maize stalk and dry matter, the yield of trefoil fodder dry matter, and the biomass and respiratory activity of soil microflora were considerably increased. The combined effects of their association led to a significant decrease in populations of the plant-parasitic nematode, Pratylenchus vulnus, in maize roots, and in the population of borers. Some soil chemical features were modified.", "keywords": ["RENDEMENT", "propri\u00e9t\u00e9 physicochimique du sol", "COUVERT VEGETAL", "organisme du sol", "F08 - Syst\u00e8mes et modes de culture", "rendement des cultures", "http://aims.fao.org/aos/agrovoc/c_29111", "FAUNE DU SOL", "taux de croissance", "Zea mays", "630", "plante de couverture", "ravageur des plantes", "Pratylenchus vulnus", "http://aims.fao.org/aos/agrovoc/c_10176", "http://aims.fao.org/aos/agrovoc/c_3081", "http://aims.fao.org/aos/agrovoc/c_33552", "Oligochaeta", "2. Zero hunger", "FERTILITE DU SOL", "http://aims.fao.org/aos/agrovoc/c_1936", "http://aims.fao.org/aos/agrovoc/c_24794", "MICROBIOLOGIE DU SOL", "http://aims.fao.org/aos/agrovoc/c_7182", "P34 - Biologie du sol", "http://aims.fao.org/aos/agrovoc/c_16196", "http://aims.fao.org/aos/agrovoc/c_16130", "04 agricultural and veterinary sciences", "NEMATODE", "15. Life on land", "H10 - Ravageurs des plantes", "http://aims.fao.org/aos/agrovoc/c_6543", "Lotus uliginosus", "MAIS", "http://aims.fao.org/aos/agrovoc/c_8504", "DYNAMIQUE DE POPULATION", "0401 agriculture", " forestry", " and fisheries", "http://aims.fao.org/aos/agrovoc/c_4446", "LOMBRIC"], "contacts": [{"organization": "Boyer, J., Michellon, R., Chabanne, A., /Reversat, Georges, Tibere, R.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s003740050505"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biology%20and%20Fertility%20of%20Soils", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s003740050505", "name": "item", "description": "10.1007/s003740050505", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s003740050505"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1999-02-08T00:00:00Z"}}, {"id": "10.1007/s11356-017-0378-3", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-05-25T16:14:57Z", "type": "Journal Article", "created": "2017-10-09", "title": "Intra- and inter-specific variations in chitin in lichens along a N-deposition gradient", "description": "The mechanisms of nitrogen (N) tolerance in lichens are not yet fully understood. Here, we investigated how the increase of chitin content is related with N excess at inter- and intra-specific levels, by using species with differing ecological N tolerances (the tolerant Xanthoria parietina and Parmotrema hypoleucinum and the sensitive Evernia prunastri and Usnea sp.) and thalli of X. parietina and P. hypoleucinum from sites with different availabilities of N of agricultural origin (livestock), as confirmed by lichen N content and \u03b415N. Nitrogen, chitin (N-containing compound), and ergosterol contents were measured in lichen thalli. Nitrogen and chitin contents were higher in tolerant species than those in sensitive ones (inter-specific level) and in thalli collected from the N-polluted site than in thalli from the clean site (intra-specific level). We suggest that chitin contributes to N stress tolerance in lichens, and that excess N can be partially stored as chitin (non-toxic form) in the cell walls of tolerant species.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Ascomycota", "Biological Variation", " Population", "Lichens", "Nitrogen", "Ergosterol", "Chitin", "15. Life on land"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11356-017-0378-3.pdf"}, {"href": "https://doi.org/10.1007/s11356-017-0378-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20and%20Pollution%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11356-017-0378-3", "name": "item", "description": "10.1007/s11356-017-0378-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11356-017-0378-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-10-09T00:00:00Z"}}, {"id": "10.1016/j.apsoil.2017.08.009", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:30Z", "type": "Journal Article", "created": "2017-09-18", "title": "Changes in the genetic structure of an invasive earthworm species (Lumbricus terrestris, Lumbricidae) along an urban \u2013 rural gradient in North America", "description": "European earthworms were introduced to North America by European settlers about 400 years ago. Human-mediated introductions significantly contributed to the spread of European species, which commonly are used as fishing bait and are often disposed deliberately in the wild. We investigated the genetic structure of Lumbricus terrestris in a 100 km range south of Calgary, Canada, an area that likely was devoid of this species two decades ago. Genetic relationships among populations, gene flow, and migration events among populations were investigated using seven microsatellite markers and the mitochondrial 16S rDNA gene. Earthworms were collected at different distances from the city and included fishing baits from three different bait distributors. The results suggest that field populations in Alberta established rather recently and that bait and field individuals in the study area have a common origin. Genetic variance within populations decreased outside of the urban area, and the most distant populations likely originated from a single introduction event. The results emphasise the utility of molecular tools to understand the spatial extent and connectivity of populations of exotic species, in particular soil-delling species, that invade native ecosystems and to obtain information on the origin of populations. Such information is crucial for developing management and prevention strategies to limit and control establishment of non-native earthworms in North America.", "keywords": ["0106 biological sciences", "0301 basic medicine", "570", "03 medical and health sciences", "Ecology", " evolutionary biology", "11. Sustainability", "15. Life on land", "Microsatellites", " Exotic earthworms", " Invasion", " Gene flow", " Dispersal", " Population structure", " Soil", "01 natural sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2017.08.009"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2017.08.009", "name": "item", "description": "10.1016/j.apsoil.2017.08.009", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2017.08.009"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-11-01T00:00:00Z"}}, {"id": "10.1016/j.baae.2006.07.001", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:33Z", "type": "Journal Article", "created": "2006-08-31", "title": "Patch Choice Of Avian Herbivores Along A Migration Trajectory - From Temperate To Arctic", "description": "<p>Migratory waterfowl species seem to track temporal and spatial pulses of optimal forage availability on their way from temperate wintering to arctic breeding sites. In order to unravel the relative contribution of forage quality and forage biomass to foraging choices in avian herbivores, we experimentally manipulated biomass and quality of main forage plants through fertilisation and grazing exclusion at three sites along the flyway of barnacle geese, Branta leucopsis. Fertilisation increased the nitrogen content of the forage and grazing exclusion increased biomass levels. Manipulated plots were offered to wild geese in a random block experimental design and goose visitation was measured through dropping counts. At all sites there was a trend towards a higher preference of plots with increased quality and average biomass above plots with an average quality and increased biomass. Generally, geese preferred plots with highest standing crop of nitrogen. The numerical response of the geese to forage changes was supported by behavioural observations at the Baltic site. We conclude that for migrating barnacle geese the bottlenecks in the standing crop of nitrogen appear to tie in the limited biomass availability at the Baltic stopover site and the limited nutrient content of food in the Arctic breeding site, restricting the potential nutrient intake on these sites. (C) 2006 Gesellschaft fur Okologie. Published by Elsevier GmbH. All rights reserved.</p>", "keywords": ["barnacle goose", "0106 biological sciences", "SNOW GEESE", "BRENT GEESE", "KOLOKOLKOVA BAY", "Branta leucopsis", "B-BERNICLA", "15. Life on land", "BARNACLE GEESE", "GOOSE POPULATION", "grazing experiment", "01 natural sciences", "ptant-herbivore interactions", "salt marsh", "FOOD QUALITY", "flyway", "forage quality", "FORAGING BEHAVIOR", "plant biomass", "GEESE BRANTA-LEUCOPSIS", "BODY-SIZE"], "contacts": [{"organization": "R.H. Drent, Julia Stahl, A. J. van der Graaf, G. F. (Ciska) Veen, R.M. Havinga,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.baae.2006.07.001"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Basic%20and%20Applied%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.baae.2006.07.001", "name": "item", "description": "10.1016/j.baae.2006.07.001", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.baae.2006.07.001"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-07-01T00:00:00Z"}}, {"id": "10.1016/j.scitotenv.2022.156952", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:16:44Z", "type": "Journal Article", "created": "2022-06-22", "title": "Integrated organic and inorganic fertilization and reduced irrigation altered prokaryotic microbial community and diversity in different compartments of wheat root zone contributing to improved nitrogen uptake and wheat yield", "description": "Open AccessThe effect of long-term water and integrated fertilization on prokaryotic microorganisms and their regulation for crop nutrient uptake remains unknown. Therefore, the impact of soil water and integrated fertilization after eight years on prokaryotic microbial communities in different compartments of root zone and their association with wheat nitrogen (N) absorption and yield were investigated. The results showed that compared with fertilization treatments (F), water regimes (W) more drastically modulated the prokaryotic microbial community structure and diversity in bulk soil, rhizosphere and endosphere. The increase of irrigation improved the prokaryotic diversity in the rhizosphere and endosphere while decreased the diversity in the bulk soil. Application of organic fertilizers significantly improved soil organic matter (SOM) and nutrient contents, increased rhizosphere and endophytic prokaryotic microbial diversity, and elevated the relative abundance of aerobic ammonia oxidation and nitrification-related functional microorganisms in rhizosphere and endosphere. Increasing irrigation elevated the relative abundance of functional microorganisms related to aerobic ammonia oxidation and nitrification in the rhizosphere and endosphere. Soil water content (SWC) and NH4+-N as well as NO3\u2212-N were key predictors of prokaryotic microbial community composition under W and F treatments, respectively. Appropriate application of irrigation and organic fertilizers increased the relative abundance of some beneficial bacteria such as Flavobacterium. Water and fertilization treatments regulated the prokaryotic microbial communities of bulk soil, rhizosphere and endosphere by altering SWC and SOM, and provided evidence for the modulation of prokaryotic microorganisms to promote nitrogen uptake and wheat yield under long-term irrigation and fertilization. Conclusively, the addition of organic manure (50 %) with inorganic fertilizers (50 %) and reduced amount of irrigation (pre-sowing and jointing-period irrigation) decreased the application amount of chemical fertilizers and water, while increased SOM and nutrient content, improved prokaryotic diversity, and changed prokaryotic microbial community structure in the wheat root zone, resulting in enhanced nutrient uptake and wheat yield.", "keywords": ["0106 biological sciences", "Yield", "Microorganism", "Microbial population biology", "Nitrogen", "Soil Science", "Organic chemistry", "Plant Science", "01 natural sciences", "Environmental science", "Agricultural and Biological Sciences", "Soil", "Symbiotic Nitrogen Fixation in Legumes", "Soil water", "Genetics", "Fertilizers", "Biology", "Irrigation", "Soil Microbiology", "Triticum", "2. Zero hunger", "Soil organic matter", "Soil Fertility", "Physicochemical factors", "Ecology", "Bacteria", "Microbiota", "Marine Microbial Diversity and Biogeography", "Water", "Life Sciences", "04 agricultural and veterinary sciences", "15. Life on land", "Nitrification", "Agronomy", "6. Clean water", "Chemistry", "Human fertilization", "13. Climate action", "Fertilization", "FOS: Biological sciences", "Environmental Science", "Physical Sciences", "Rhizosphere", "Bulk soil", "0401 agriculture", " forestry", " and fisheries", "Prokaryotic microorganisms", "Endosphere", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Nutrient"]}, "links": [{"href": "https://doi.org/10.1016/j.scitotenv.2022.156952"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.scitotenv.2022.156952", "name": "item", "description": "10.1016/j.scitotenv.2022.156952", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.scitotenv.2022.156952"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-10-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2020.107933", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:16:57Z", "type": "Journal Article", "created": "2020-08-10", "title": "Mycorrhizal association of common European tree species shapes biomass and metabolic activity of bacterial and fungal communities in soil", "description": "Open AccessRecent studies have revealed effects of various tree species on soil physical and chemical properties. However, effects of various tree species on composition and activity of soil microbiota and the relevant controls remain poorly understood. We evaluated the influence of tree species associated with two different mycorrhizal types, ectomycorrhiza (EcM) and arbuscular mycorrhiza (AM), on growth, biomass and metabolic activity of soil fungal and bacterial communities using common garden tree species experiments throughout Denmark. The soil microbial communities differed between six European tree species as well as between EcM (beech, lime, oak and spruce) and AM (ash and maple) tree species. The EcM tree species had higher fungal biomass, fungal growth and bacterial biomass, while AM species showed higher bacterial growth. The results indicated that microbial community composition and functioning differed between groups of tree species with distinct litter qualities that generate soil C/N ratio and soil pH differences. The mycorrhizal association only partly explained litter quality and soil microbial species differences since lime was more similar to AM tree species. In addition, our results indicated that tree species-mediated soil pH and C/N ratio were the most important variables shaping microbial communities with a positive effect on bacterial and a negative effect on fungal growth rates. The results suggest that tree species-mediated microbial community composition and activity may be important drivers of the different vertical soil C distribution previously observed in AM and EcM tree species.", "keywords": ["2. Zero hunger", "FOS: Biological sciences", "Populations and Evolution (q-bio.PE)", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Quantitative Biology - Populations and Evolution"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2020.107933"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2020.107933", "name": "item", "description": "10.1016/j.soilbio.2020.107933", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2020.107933"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2022.108754", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:16:58Z", 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\u0627\u0644\u0645\u0631\u062a\u0628\u0637 \u0628\u0627\u0644\u0645\u0639\u0627\u062f\u0646 \u0648\u062a\u0645\u0639\u062f\u0646 \u0645\u064a\u0643\u0631\u0648\u0628\u064a \u0623\u0643\u0628\u0631 \u0644\u0640 SOM \u0645\u0639 \u0627\u0631\u062a\u0641\u0627\u0639 \u0627\u0644\u0637\u0644\u0628 \u0639\u0644\u0649 \u0627\u0644\u0645\u0648\u0627\u0631\u062f \u0627\u0644\u0645\u064a\u0643\u0631\u0648\u0628\u064a\u0629. \u062a\u0634\u064a\u0631 \u0627\u0644\u0646\u062a\u0627\u0626\u062c \u0625\u0644\u0649 \u0623\u0646 EA \u0628\u0648\u0633\u0627\u0637\u0629 \u0623\u0646\u0648\u0627\u0639 \u0627\u0644\u0623\u0634\u062c\u0627\u0631\u060c \u0648\u0627\u0644\u062d\u062f \u0645\u0646 \u0627\u0644\u0645\u0648\u0627\u0631\u062f \u0627\u0644\u0645\u064a\u0643\u0631\u0648\u0628\u064a\u0629 \u0648\u062a\u0643\u0648\u064a\u0646 \u0627\u0644\u0645\u062c\u062a\u0645\u0639 \u0627\u0644\u0645\u064a\u0643\u0631\u0648\u0628\u064a \u0647\u064a \u0645\u062d\u0631\u0643\u0627\u062a \u0645\u0647\u0645\u0629 \u0644\u0644\u0645\u062e\u0632\u0648\u0646\u0627\u062a \u0648\u0627\u0644\u062a\u0648\u0632\u064a\u0639 \u0627\u0644\u0631\u0623\u0633\u064a \u0644\u0645\u062e\u0632\u0648\u0646 \u0627\u0644\u0643\u0631\u0628\u0648\u0646 \u0627\u0644\u0639\u0636\u0648\u064a \u0641\u064a \u0627\u0644\u062a\u0631\u0628\u0629 \u0628\u064a\u0646 \u0623\u0646\u0648\u0627\u0639 \u0627\u0644\u0623\u0634\u062c\u0627\u0631 \u0648\u0628\u064a\u0646 \u0646\u0648\u0639\u064a\u0646 \u0645\u0646 \u0627\u0644\u062c\u0630\u0648\u0631 \u0627\u0644\u0641\u0637\u0631\u064a\u0629 \u0627\u0644\u0645\u0631\u062a\u0628\u0637\u0629 \u0628\u0647\u0627.", "keywords": ["Biomass (ecology)", "Microbial population biology", "Fagus sylvatica", "Soil Science", "Plant Science", "Plant litter", "Agricultural and Biological Sciences", "Mycorrhizal Fungi and Plant Interactions", "Soil water", "Genetics", "Monoculture", "Forest floor", "Saproxylic Insect Ecology and Forest Management", "Biology", "Beech", "Soil organic matter", "Soil Fertility", "Ecology", "Bacteria", "Picea abies", "Botany", "Life Sciences", "04 agricultural and veterinary sciences", "Soil carbon", "Agronomy", "Insect Science", "FOS: Biological sciences", "0401 agriculture", " forestry", " and fisheries", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Nutrient"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2022.108754"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2022.108754", "name": "item", "description": "10.1016/j.soilbio.2022.108754", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2022.108754"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-09-01T00:00:00Z"}}, {"id": "10.1038/s41598-019-50565-7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:17:42Z", "type": "Journal Article", "created": "2019-10-02", "title": "Tradeoffs in hyphal traits determine mycelium architecture in saprobic fungi", "description": "Abstract<p>The fungal mycelium represents the essence of the fungal lifestyle, and understanding how a mycelium is constructed is of fundamental importance in fungal biology and ecology. Previous studies have examined initial developmental patterns or focused on a few strains, often mutants of model species, and frequently grown under non-harmonized growth conditions; these factors currently collectively hamper systematic insights into rules of mycelium architecture. To address this, we here use a broader suite of fungi (31 species including members of the Ascomycota, Basidiomycota and Mucoromycota), all isolated from the same soil, and tested for ten architectural traits under standardized laboratory conditions. We find great variability in traits among the saprobic fungal species, and detect several clear tradeoffs in mycelial architecture, for example between internodal length and hyphal diameter. Within the constraints so identified, we document otherwise great versatility in mycelium architecture in this set of fungi, and there was no evidence of trait \uffe2\uff80\uff98syndromes\uffe2\uff80\uff99 as might be expected. Our results point to an important dimension of fungal properties with likely consequences for coexistence within local communities, as well as for functional complementarity (e.g. decomposition, soil aggregation).</p>", "keywords": ["580", "saprobic fungi", "0301 basic medicine", "0303 health sciences", "Basidiomycota", "Hyphae", "15. Life on land", "Adaptation", " Physiological", "Article", "03 medical and health sciences", "Ascomycota", "Biological Variation", " Population", "Mucor", "determine mycelium architecture"]}, "links": [{"href": "https://www.nature.com/articles/s41598-019-50565-7.pdf"}, {"href": "https://doi.org/10.1038/s41598-019-50565-7"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Scientific%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41598-019-50565-7", "name": "item", "description": "10.1038/s41598-019-50565-7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41598-019-50565-7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-10-02T00:00:00Z"}}, {"id": "10.1038/srep19536", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:17:45Z", "type": "Journal Article", "created": "2016-01-14", "title": "Soil Microbial Responses To Forest Floor Litter Manipulation And Nitrogen Addition In A Mixed-Wood Forest Of Northern China", "description": "Abstract<p>Changes in litterfall dynamics and soil properties due to anthropogenic or natural perturbations have important implications to soil carbon (C) and nutrient cycling via microbial pathway. Here we determine soil microbial responses to contrasting types of litter inputs (leaf vs. fine woody litter) and nitrogen (N) deposition by conducting a multi-year litter manipulation and N addition experiment in a mixed-wood forest. We found significantly higher soil organic C, total N, microbial biomass C (MBC) and N (MBN), microbial activity (MR) and activities of four soil extracellular enzymes, including \uffce\uffb2-glucosidase (BG), N-acetyl-\uffce\uffb2-glucosaminidase (NAG), phenol oxidase (PO) and peroxidase (PER), as well as greater total bacteria biomass and relative abundance of gram-negative bacteria (G-) community, in top soils of plots with presence of leaf litter than of those without litter or with presence of only fine woody litter. No apparent additive or interactive effects of N addition were observed in this study. The occurrence of more labile leaf litter stimulated G-, which may facilitate microbial community growth and soil C stabilization as inferred by findings in literature. A continued treatment with contrasting types of litter inputs is likely to result in divergence in soil microbial community structure and function.</p>", "keywords": ["Biomass (ecology)", "China", "Biogeochemical Cycling of Nutrients in Aquatic Ecosystems", "Microbial population biology", "Nitrogen", "Soil Science", "Organic chemistry", "Forests", "Nitrogen cycle", "Article", "Plant litter", "Nutrient cycle", "Environmental science", "Microbial Ecology", "Agricultural and Biological Sciences", "Soil", "Soil biology", "Litter", "Soil water", "Genetics", "Environmental Chemistry", "Biomass", "Forest floor", "Biology", "Soil Microbiology", "Ecosystem", "2. Zero hunger", "Ecology", "Bacteria", "Marine Microbial Diversity and Biogeography", "Life Sciences", "04 agricultural and veterinary sciences", "15. Life on land", "Wood", "Soil carbon", "Carbon", "Agronomy", "6. Clean water", "3. Good health", "Chemistry", "FOS: Biological sciences", "Environmental Science", "Physical Sciences", "0401 agriculture", " forestry", " and fisheries", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Nutrient"]}, "links": [{"href": "https://doi.org/10.1038/srep19536"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Scientific%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/srep19536", "name": "item", "description": "10.1038/srep19536", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/srep19536"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-01-14T00:00:00Z"}}, {"id": "10.1080/00438243.2021.1891963", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:18:06Z", "type": "Journal Article", "created": "2021-03-23", "title": "European agricultural terraces and lynchets: from archaeological theory to heritage management", "description": "Terraces are highly productive, culturally distinctive socioecological systems. Although they form part of time/place-specific debates, terraces per se have been neglected - fields on slopes or landscape elements. We argue that this is due to mapping and dating problems, and lack of artefacts/ecofacts. However, new techniques can overcome some of these constraints, allowing us to re-engage with theoretical debates around agricultural intensification. Starting from neo-Broserupian propositions, we can engage with the sociopolitical and environmental aspects of terrace emergence, maintenance and abandonment. Non-reductionist avenues include identifying and dating different phases of development within single terrace systems, identifying a full crop-range, and other activities not generally associated with terraces (e.g. metallurgy). The proposition here is that terraces are a multi-facetted investment that includes both intensification and diversification and can occur under a range of social conditions but which constitutes a response to demographic pressure in the face to fluctuating environmental conditions.", "keywords": ["2. Zero hunger", "550", "11. Sustainability", "VDP::Humanities: 000::Archeology: 090", "0601 history and archaeology", "Articles", "06 humanities and the arts", "VDP::Humaniora: 000::Arkeologi: 090", "15. Life on land", "Agricultural intensification; agricultural sustainability; landscape change; population density; remote sensing; terrace classification"]}, "links": [{"href": "https://eprints.whiterose.ac.uk/172476/1/European_agricultural_terraces_and_lynchets_from_archaeological_theory_to_heritage_management.pdf"}, {"href": "https://www.research.unipd.it/bitstream/11577/3390089/5/Brown%20et%20al.%20%282020%29.pdf"}, {"href": "https://eprints.soton.ac.uk/448979/1/European_agricultural_terraces_and_lynchets_from_archaeological_theory_to_heritage_management.pdf"}, {"href": "https://www.tandfonline.com/doi/pdf/10.1080/00438243.2021.1891963"}, {"href": "https://doi.org/10.1080/00438243.2021.1891963"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/World%20Archaeology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1080/00438243.2021.1891963", "name": "item", "description": "10.1080/00438243.2021.1891963", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1080/00438243.2021.1891963"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-08-07T00:00:00Z"}}, {"id": "10.1093/ismejo/wrae025", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:18:17Z", "type": "Journal Article", "created": "2024-02-12", "title": "Stronger compensatory thermal adaptation of soil microbial respiration with higher substrate availability", "description": "Abstract                <p>Ongoing global warming is expected to augment soil respiration by increasing the microbial activity, driving self-reinforcing feedback to climate change. However, the compensatory thermal adaptation of soil microorganisms and substrate depletion may weaken the effects of rising temperature on soil respiration. To test this hypothesis, we collected soils along a large-scale forest transect in eastern China spanning a natural temperature gradient, and we incubated the soils at different temperatures with or without substrate addition. We combined the exponential thermal response function and a data-driven model to study the interaction effect of thermal adaptation and substrate availability on microbial respiration and compared our results to those from two additional continental and global independent datasets. Modeled results suggested that the effect of thermal adaptation on microbial respiration was greater in areas with higher mean annual temperatures, which is consistent with the compensatory response to warming. In addition, the effect of thermal adaptation on microbial respiration was greater under substrate addition than under substrate depletion, which was also true for the independent datasets reanalyzed using our approach. Our results indicate that thermal adaptation in warmer regions could exert a more pronounced negative impact on microbial respiration when the substrate availability is abundant. These findings improve the body of knowledge on how substrate availability influences the soil microbial community\uffe2\uff80\uff93temperature interactions, which could improve estimates of projected soil carbon losses to the atmosphere through respiration.</p", "keywords": ["0301 basic medicine", "Atmospheric sciences", "Microbial population biology", "soil carbon decomposition", "global warming", "Global Warming", "Agricultural and Biological Sciences", "Soil carbon decomposition", "Soil", "Engineering", "Soil water", "Climate change", "Soil Microbiology", "2. Zero hunger", "Global and Planetary Change", "0303 health sciences", "Adaptation (eye)", "Q10", "Ecology", "Soil Water Retention", "Respiration", "Global warming", "Temperature", "Life Sciences", "Geology", "Soil respiration", "Soil carbon", "6. Clean water", "Physical Sciences", "Original Article", "570", "Mechanics and Transport in Unsaturated Soils", "Climate Change", "Soil Science", "Thermal Effects on Soil", "Environmental science", "03 medical and health sciences", "Microbial respiration", "microbial respiration", "Biowissenschaften; Biologie", "Genetics", "Biology", "Civil and Structural Engineering", "Soil science", "Soil Fertility", "Bacteria", "Global Forest Drought Response and Climate Change", "Botany", "FOS: Earth and related environmental sciences", "15. Life on land", "Carbon", "microbial thermal adaptation", "Microbial thermal adaptation", "13. Climate action", "FOS: Biological sciences", "Environmental Science", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Substrate (aquarium)", "Neuroscience"], "contacts": [{"organization": "Lili Qu, Chao Wang, Stefano Manzoni, Marina Dacal, Fernando T. Maestre, Edith Bai,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1093/ismejo/wrae025"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20ISME%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/ismejo/wrae025", "name": "item", "description": "10.1093/ismejo/wrae025", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/ismejo/wrae025"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "10.1093/pcp/pcae113", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:18:19Z", "type": "Journal Article", "created": "2024-11-06", "title": "Population Genomics Reveals Demographic History and Climate Adaptation in Japanese Arabidopsis halleri", "description": "Abstract                <p>Climate oscillations in the Quaternary forced species to major latitudinal or altitudinal range shifts. It has been suggested that adaptation concomitant with range shifts plays key roles in species responses during climate oscillations, but the role of selection for local adaptation to climatic changes remains largely unexplored. Here, we investigated population structure, demographic history and signatures of climate-driven selection based on genome-wide polymorphism data of 141 Japanese Arabidopsis halleri individuals, with European ones as outgroups. Coalescent-based analyses suggested a genetic differentiation between Japanese subpopulations since the Last Glacial Period (LGP), which would have contributed to shaping the current pattern of population structure. Population demographic analysis revealed the population size fluctuations in the LGP, which were particularly prominent since the subpopulations started to diverge (\uffe2\uff88\uffbc50, 000 years ago). The ecological niche modeling predicted the geographic or distribution range shifts from southern coastal regions to northern coastal and mountainous areas, possibly in association with the population size fluctuations. Through genome-wide association analyses of bioclimatic variables and selection scans, we investigated whether climate-associated loci are enriched in the extreme tails of selection scans, and demonstrated the prevailing signatures of selection, particularly toward a warmer climate in southern subpopulations and a drier environment in northern subpopulations, which may have taken place during or after the LGP. Our study highlights the importance of integrating climate associations, selection scans and population demographic analyses for identifying genomic signatures of population-specific adaptation, which would also help us predict the evolutionary responses to future climate changes.</p", "keywords": ["[SDV] Life Sciences [q-bio]", "Genetics", " Population", "Special Issue - Regular Paper", "Japan", "Climate", "Climate Change", "Acclimatization", "Arabidopsis", "Selection", " Genetic", "Adaptation", " Physiological", "Genome", " Plant", "Genome-Wide Association Study"]}, "links": [{"href": "https://academic.oup.com/pcp/advance-article-pdf/doi/10.1093/pcp/pcae113/60430271/pcae113.pdf"}, {"href": "https://doi.org/10.1093/pcp/pcae113"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20And%20Cell%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/pcp/pcae113", "name": "item", "description": "10.1093/pcp/pcae113", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/pcp/pcae113"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-09-30T00:00:00Z"}}, {"id": "10.1098/rstb.2018.0243", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:18:23Z", "type": "Journal Article", "created": "2019-06-03", "title": "Convergent evolution inArabidopsis halleriandArabidopsis arenosaon calamine metalliferous soils", "description": "<p>It is a plausible hypothesis that parallel adaptation events to the same environmental challenge should result in genetic changes of similar or identical effects, depending on the underlying fitness landscapes. However, systematic testing of this is scarce. Here we examine this hypothesis in two closely related plant species,Arabidopsis halleriandArabidopsis arenosa, which co-occur at two calamine metalliferous (M) sites harbouring toxic levels of the heavy metals zinc and cadmium. We conduct individual genome resequencing alongside soil elemental analysis for 64 plants from eight populations on M and non-metalliferous (NM) soils, and identify genomic footprints of selection and local adaptation. Selective sweep and environmental association analyses indicate a modest degree of gene as well as functional network convergence, whereby the proximal molecular factors mediating this convergence mostly differ between site pairs and species. Notably, we observe repeated selection on identical single nucleotide polymorphisms in severalA. hallerigenes at two independently colonized M sites. Our data suggest that species-specific metal handling and other biological features could explain a low degree of convergence between species. The parallel establishment of plant populations on calamine M soils involves convergent evolution, which will probably be more pervasive across sites purposely chosen for maximal similarity in soil composition.</p><p>This article is part of the theme issue \uffe2\uff80\uff98Convergent evolution in the genomics era: new insights and directions\uffe2\uff80\uff99.</p", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Part I: Population Genomics and Convergent Evolution within Species", "Arabidopsis", "selection", "adaptation", "15. Life on land", "Convergence; adaptation; evolution; selective sweep; selection", "Adaptation", " Physiological", "Biological Evolution", "Polymorphism", " Single Nucleotide", "selective sweep", "Soil", "Zinc", "03 medical and health sciences", "evolution", "Soil Pollutants", "Convergence", "Cadmium"]}, "links": [{"href": "https://www.biorxiv.org/content/10.1101/459362v1.full.pdf"}, {"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rstb.2018.0243"}, {"href": "https://doi.org/10.1098/rstb.2018.0243"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Philosophical%20Transactions%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rstb.2018.0243", "name": "item", "description": "10.1098/rstb.2018.0243", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rstb.2018.0243"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-11-03T00:00:00Z"}}, {"id": "10.1111/1755-0998.12949", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:18:32Z", "type": "Journal Article", "created": "2018-09-29", "title": "Conditionally autoregressive models improve occupancy analyses of autocorrelated data: An example with environmental DNA", "description": "Abstract<p>Site occupancy\uffe2\uff80\uff90detection models (SODMs) are statistical models widely used for biodiversity surveys where imperfect detection of species occurs. For instance, SODMs are increasingly used to analyse environmental DNA (eDNA) data, taking into account the occurrence of both false\uffe2\uff80\uff90positive and false\uffe2\uff80\uff90negative errors. However, species occurrence data are often characterized by spatial and temporal autocorrelation, which might challenge the use of standard SODMs. Here we reviewed the literature of eDNA biodiversity surveys and found that most of studies do not take into account spatial or temporal autocorrelation. We then demonstrated how the analysis of data with spatial or temporal autocorrelation can be improved by using a conditionally autoregressive SODM, and show its application to environmental DNA data. We tested the autoregressive model on both simulated and real data sets, including chronosequences with different degrees of autocorrelation, and a spatial data set on a virtual landscape. Analyses of simulated data showed that autoregressive SODMs perform better than traditional SODMs in the estimation of key parameters such as true\uffe2\uff80\uff90/false\uffe2\uff80\uff90positive rates and show a better discrimination capacity (e.g., higher true skill statistics). The usefulness of autoregressive SODMs was particularly high in data sets with strong autocorrelation. When applied to real eDNA data sets (eDNA from lake sediment cores and freshwater), autoregressive SODM provided more precise estimation of true\uffe2\uff80\uff90/false\uffe2\uff80\uff90positive rates, resulting in more reasonable inference of occupancy states. Our results suggest that analyses of occurrence data, such as many applications of eDNA, can be largely improved by applying conditionally autoregressive specifications to SODMs.</p>", "keywords": ["0106 biological sciences", "Genetics", " Population", "Spatio-Temporal Analysis", "330", "DNA", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "Biostatistics", "15. Life on land", "Biota", "01 natural sciences", "conditionally autoregressive model; sedimentary DNA; spatial autocorrelation; species occupancy-detection model; temporal autocorrelation; true skill statistics; Biostatistics; DNA; Spatio-Temporal Analysis; Biota; Genetics", " Population; Biotechnology; Ecology", " Evolution", " Behavior and Systematics; Genetics"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/635968/2/Chen_et_al-2019-Molecular_Ecology_Resources.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1755-0998.12949"}, {"href": "https://doi.org/10.1111/1755-0998.12949"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Molecular%20Ecology%20Resources", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1755-0998.12949", "name": "item", "description": "10.1111/1755-0998.12949", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1755-0998.12949"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-11-01T00:00:00Z"}}, {"id": "10.1111/gcb.14739", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:18:38Z", "type": "Journal Article", "created": "2019-06-20", "title": "Continental\u2010scale determinants of population trends in European amphibians and reptiles", "description": "Abstract<p>The continuous decline of biodiversity is determined by the complex and joint effects of multiple environmental drivers. Still, a large part of past global change studies reporting and explaining biodiversity trends have focused on a single driver. Therefore, we are often unable to attribute biodiversity changes to different drivers, since a multivariable design is required to disentangle joint effects and interactions. In this work, we used a meta\uffe2\uff80\uff90regression within a Bayesian framework to analyze 843 time series of population abundance from 17 European amphibian and reptile species over the last 45\uffc2\uffa0years. We investigated the relative effects of climate change, alien species, habitat availability, and habitat change in driving trends of population abundance over time, and evaluated how the importance of these factors differs across species. A large number of populations (54%) declined, but differences between species were strong, with some species showing positive trends. Populations declined more often in areas with a high number of alien species, and in areas where climate change has caused loss of suitability. Habitat features showed small variation over the last 25\uffc2\uffa0years, with an average loss of suitable habitat of 0.1%/year per population. Still, a strong interaction between habitat availability and the richness of alien species indicated that the negative impact of alien species was particularly strong for populations living in landscapes with less suitable habitat. Furthermore, when excluding the two commonest species, habitat loss was the main correlate of negative population trends for the remaining species. By analyzing trends for multiple species across a broad spatial scale, we identify alien species, climate change, and habitat changes as the major drivers of European amphibian and reptile decline.</p>", "keywords": ["0106 biological sciences", "570", "[SDE.MCG]Environmental Sciences/Global Changes", "Climate Change", "Reptiles", "Bayes Theorem", "Biodiversity", "15. Life on land", "01 natural sciences", "Amphibians", "13. Climate action", "Animals", "14. Life underwater", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "alien species; climate change; demography; land-cover change; meta-analysis; population trends; species distribution models", "Ecosystem"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/652580/2/Falaschi_etal_pnlinefirst_2019.pdf"}, {"href": "https://air.unimi.it/bitstream/2434/652580/5/Falaschi_et_al-2019-Global_Change_Biology%20%281%29.pdf"}, {"href": "https://air.unimi.it/bitstream/2434/652580/7/Falaschi%20et%20al%202019%20Global%20Change%20Biology%20submitted.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.14739"}, {"href": "https://doi.org/10.1111/gcb.14739"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.14739", "name": "item", "description": "10.1111/gcb.14739", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.14739"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-07-19T00:00:00Z"}}, {"id": "10.1371/journal.pone.0038858", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:19:26Z", "type": "Journal Article", "created": "2012-06-11", "title": "Decline In Topsoil Microbial Quotient, Fungal Abundance And C Utilization Efficiency Of Rice Paddies Under Heavy Metal Pollution Across South China", "description": "Open AccessLos suelos agr\u00edcolas han estado cada vez m\u00e1s sujetos a la contaminaci\u00f3n por metales pesados en todo el mundo. Sin embargo, los impactos en la estructura y actividad de la comunidad microbiana del suelo de los suelos de campo a\u00fan no se han caracterizado bien. En 2009 se recolectaron muestras de tierra vegetal de campos de arroz contaminados con metales pesados (PS) y sus campos de fondo (BGS) en cuatro sitios del sur de China. Los cambios con la contaminaci\u00f3n met\u00e1lica en relaci\u00f3n con el BGS en el tama\u00f1o y la estructura de la comunidad de los microorganismos del suelo se examinaron con m\u00faltiples ensayos microbiol\u00f3gicos de medici\u00f3n de carbono de biomasa (MBC) y nitr\u00f3geno (MBN), recuento en placa de colonias cultivables y an\u00e1lisis de \u00e1cidos grasos fosfol\u00edpidos (PLFA) junto con el perfil de electroforesis en gel de gradiente desnaturalizante (DGGE) del gen de ARNr 16S y ARNr 18S y ensayo de PCR en tiempo real. Adem\u00e1s, se llev\u00f3 a cabo una incubaci\u00f3n de laboratorio de 7 d\u00edas a una temperatura constante de 25 \u00b0C para realizar un seguimiento adicional de los cambios en la actividad metab\u00f3lica. Si bien la disminuci\u00f3n de la contaminaci\u00f3n por metales en MBC y MBN, as\u00ed como en el tama\u00f1o de la poblaci\u00f3n cultivable, el contenido total de PLFA y el n\u00famero de bandas DGGE de bacterias no se observaron de manera significativa y consistente, de hecho se observ\u00f3 una reducci\u00f3n significativa de la contaminaci\u00f3n por metales en el cociente microbiano, en el tama\u00f1o de la poblaci\u00f3n f\u00fangica cultivable y en la proporci\u00f3n de PLFA f\u00fangicos a bacterianos de manera consistente en todos los sitios en una medida que var\u00eda de 6% a 74%. Adem\u00e1s, se observ\u00f3 un aumento consistentemente significativo en el cociente metab\u00f3lico de hasta un 68% bajo contaminaci\u00f3n en todos los sitios. Estas observaciones apoyaron un cambio de la comunidad microbiana con disminuci\u00f3n en su abundancia, disminuci\u00f3n en la proporci\u00f3n de hongos y, por lo tanto, en la eficiencia de utilizaci\u00f3n de C bajo contaminaci\u00f3n en los suelos. Adem\u00e1s, las proporciones de cociente microbiano, de hongos a bacterias y qCO2 son mejores indicativas de los impactos de los metales pesados en la estructura y actividad de la comunidad microbiana. Los efectos potenciales de estos cambios en el ciclo del carbono y la producci\u00f3n de CO2 en los arrozales contaminados merecen m\u00e1s estudios de campo.", "keywords": ["Microbial population biology", "Colony Count", " Microbial", "Agricultural and Biological Sciences", "Sociology", "Soil water", "Soil Pollutants", "Soil Microbiology", "2. Zero hunger", "Principal Component Analysis", "Temperature gradient gel electrophoresis", "Ecology", "Q", "Fatty Acids", "R", "Life Sciences", "Agriculture", "04 agricultural and veterinary sciences", "Biota", "Pollution", "6. Clean water", "FOS: Sociology", "Chemistry", "Physical Sciences", "Environmental chemistry", "Medicine", "Research Article", "Environmental Monitoring", "16S ribosomal RNA", "China", "Microorganism", "Environmental Impact of Heavy Metal Contamination", "Nitrogen", "Science", "Population", "Soil Science", "Real-Time Polymerase Chain Reaction", "Environmental science", "Microbial Ecology", "12. Responsible consumption", "Metals", " Heavy", "Genetics", "Biology", "Demography", "Bacteria", "Denaturing Gradient Gel Electrophoresis", "Marine Microbial Diversity and Biogeography", "Oryza", "15. Life on land", "Topsoil", "Carbon", "Agronomy", "RNA", " Ribosomal", "13. Climate action", "FOS: Biological sciences", "Environmental Science", "0401 agriculture", " forestry", " and fisheries", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems"]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0038858"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0038858", "name": "item", "description": "10.1371/journal.pone.0038858", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0038858"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-06-11T00:00:00Z"}}, {"id": "10.1371/journal.pone.0092985", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:19:27Z", "type": "Journal Article", "created": "2014-03-25", "title": "Comparison Of Seasonal Soil Microbial Process In Snow-Covered Temperate Ecosystems Of Northern China", "description": "Open AccessMore than half of the earth's terrestrial surface currently experiences seasonal snow cover and soil frost. Winter compositional and functional investigations in soil microbial community are frequently conducted in alpine tundra and boreal forest ecosystems. However, little information on winter microbial biogeochemistry is known from seasonally snow-covered temperate ecosystems. As decomposer microbes may differ in their ability/strategy to efficiently use soil organic carbon (SOC) within different phases of the year, understanding seasonal microbial process will increase our knowledge of biogeochemical cycling from the aspect of decomposition rates and corresponding nutrient dynamics. In this study, we measured soil microbial biomass, community composition and potential SOC mineralization rates in winter and summer, from six temperate ecosystems in northern China. Our results showed a clear pattern of increased microbial biomass C to nitrogen (N) ratio in most winter soils. Concurrently, a shift in soil microbial community composition occurred with higher fungal to bacterial biomass ratio and gram negative (G-) to gram positive (G+) bacterial biomass ratio in winter than in summer. Furthermore, potential SOC mineralization rate was higher in winter than in summer. Our study demonstrated a distinct transition of microbial community structure and function from winter to summer in temperate snow-covered ecosystems. Microbial N immobilization in winter may not be the major contributor for plant growth in the following spring.", "keywords": ["Biomass (ecology)", "Atmospheric Science", "Microbial population biology", "Decomposer", "Nutrient cycle", "Physical Phenomena", "Agricultural and Biological Sciences", "Soil", "Terrestrial ecosystem", "Snow", "Soil water", "Biomass", "Phospholipids", "Soil Microbiology", "Minerals", "Glucan 1", "4-beta-Glucosidase", "Ecology", "Geography", "Mineralization (soil science)", "Q", "R", "Life Sciences", "04 agricultural and veterinary sciences", "Biogeochemistry", "16. Peace & justice", "Earth and Planetary Sciences", "Physical Sciences", "Medicine", "Seasons", "Ecosystem Functioning", "Research Article", "China", "Nitrogen", "Science", "Soil Science", "Biogeochemical cycle", "Environmental science", "Meteorology", "Genetics", "Arctic Permafrost Dynamics and Climate Change", "Tundra", "Biology", "Ecosystem", "Soil science", "Bacteria", "Fungi", "Microbial Diversity in Antarctic Ecosystems", "15. Life on land", "Carbon", "Temperate climate", "13. Climate action", "FOS: Biological sciences", "Environmental Science", "0401 agriculture", " forestry", " and fisheries", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems"], "contacts": [{"organization": "Xinyue Zhang, Wei Wang, Weile Chen, Naili Zhang, Hui Zeng,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0092985"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0092985", "name": "item", "description": "10.1371/journal.pone.0092985", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0092985"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-03-25T00:00:00Z"}}, {"id": "10.1126/science.aal1727", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:19:07Z", "type": "Journal Article", "created": "2017-05-26", "title": "Satellites reveal contrasting responses of regional climate to the widespread greening of Earth", "description": "<p>Increasing terrestrial biomass has important impacts on the climate that affects it.</p>", "keywords": ["Population Density", "Satellite Imagery", "Multidisciplinary", "Time Factors", "Climate", "Climate Change", "Temperature", "Biophysical Phenomena; Climate Change; Population Density; Sunlight; Temperature; Time Factors; Climate; Models", " Theoretical; Plant Physiological Phenomena; Satellite Imagery", "Models", " Theoretical", "15. Life on land", "01 natural sciences", "Biophysical Phenomena", "13. Climate action", "Sunlight", "European Commission", "Plant Physiological Phenomena", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1126/science.aal1727"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1126/science.aal1727", "name": "item", "description": "10.1126/science.aal1727", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1126/science.aal1727"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-06-16T00:00:00Z"}}, {"id": "10.1371/journal.pone.0124096", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:19:28Z", "type": "Journal Article", "created": "2015-04-16", "title": "Effects Of Different Organic Manures On The Biochemical And Microbial Characteristics Of Albic Paddy Soil In A Short-Term Experiment", "description": "Open AccessCette \u00e9tude visait \u00e0 \u00e9valuer les effets des engrais chimiques (NPK), NPK avec du fumier de b\u00e9tail (NPK+M), NPK avec de la paille (NPK+S) et NPK avec du fumier vert (NPK+G) sur les activit\u00e9s enzymatiques du sol et les caract\u00e9ristiques microbiennes du sol de paddy albique, qui est un sol typique avec une faible productivit\u00e9 en Chine. Les r\u00e9ponses des activit\u00e9s enzymatiques extracellulaires et de la diversit\u00e9 des communaut\u00e9s microbiennes (d\u00e9termin\u00e9es par analyse des acides gras phospholipidiques [PLFA] et \u00e9lectrophor\u00e8se sur gel \u00e0 gradient d\u00e9naturant [DGGE]) ont \u00e9t\u00e9 mesur\u00e9es. Les r\u00e9sultats ont montr\u00e9 que NPK+M et NPK+S augmentaient significativement le rendement du riz, NPK+M \u00e9tant sup\u00e9rieur d'environ 24\u00a0% \u00e0 NPK. Le NPK+M a significativement augment\u00e9 le carbone organique du sol (SOC) et les phosphates disponibles (P) et am\u00e9lior\u00e9 les activit\u00e9s de la phosphatase, de la \u03b2-cellobiosidase, de la L-leucine aminopeptidase et de l'ur\u00e9ase. Le NPK+S a significativement augment\u00e9 le COS et le potassium disponible (K) et significativement augment\u00e9 les activit\u00e9s de la N-ac\u00e9tyl-glucosamidase, de la \u03b2-xylosidase, de l'ur\u00e9ase et de la ph\u00e9nol oxydase. Le NPK+G a significativement am\u00e9lior\u00e9 l'azote total (N), l'ammonium N, le P disponible et l'activit\u00e9 de la N-ac\u00e9tyl-glucosamidase. La biomasse de PLFA \u00e9tait la plus \u00e9lev\u00e9e sous NPK+S, suivie des traitements NPK+M et NPK+G. L'analyse en composantes principales (ACP) du PLFA a indiqu\u00e9 que les sols avec NPK+M et NPK+S contenaient des proportions plus \u00e9lev\u00e9es d'acides gras insatur\u00e9s et de cyclopropane (biomarqueurs de champignons et de bact\u00e9ries \u00e0 Gram n\u00e9gatif) et que les sols sous NPK+G contenaient plus d'acides gras satur\u00e9s \u00e0 cha\u00eene droite (repr\u00e9sentant des bact\u00e9ries \u00e0 Gram positif). La PCA des patrons DGGE a montr\u00e9 que les amendements organiques avaient une plus grande influence sur la communaut\u00e9 fongique. L'analyse en grappes des profils DGGE fongiques a r\u00e9v\u00e9l\u00e9 que NPK+G \u00e9tait clairement s\u00e9par\u00e9. Pendant ce temps, la communaut\u00e9 bact\u00e9rienne du traitement NPK+M \u00e9tait la plus distincte. L'analyse RDA a r\u00e9v\u00e9l\u00e9 que les changements dans la composition de la communaut\u00e9 microbienne d\u00e9pendaient principalement de la \u03b2-xylosidase, des activit\u00e9s de la \u03b2-cellobiosidase, de l'azote total et des teneurs en K disponibles. Les abondances de PLFA bact\u00e9riens et fongiques gram-n\u00e9gatifs probablement efficaces pour am\u00e9liorer la fertilit\u00e9 des sols de paddy albique \u00e0 faible rendement en raison de leur influence significative sur le profil DGGE.", "keywords": ["China", "Mechanics and Transport in Unsaturated Soils", "Microbial population biology", "Science", "Materials Science", "Soil Science", "Organic chemistry", "Thermal Effects on Soil", "Biochemistry", "Gene", "Agricultural and Biological Sciences", "Biomaterials", "Food science", "Soil", "Engineering", "Genetics", "Biology", "Soil Microbiology", "Civil and Structural Engineering", "Applications of Clay Nanotubes in Various Fields", "2. Zero hunger", "Temperature gradient gel electrophoresis", "Bacteria", "Q", "R", "Fungi", "Life Sciences", "Straw", "Oryza", "Phosphorus", "04 agricultural and veterinary sciences", "15. Life on land", "Urease", "Agronomy", "6. Clean water", "Manure", "Chemistry", "Enzyme", "FOS: Biological sciences", "Physical Sciences", "Medicine", "0401 agriculture", " forestry", " and fisheries", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Animal science", "Research Article", "16S ribosomal RNA"], "contacts": [{"organization": "Qian Zhang, Wei Zhou, Gaofeng Liang, Xiu\u2010Bin Wang, Jingwen Sun, Ping He, LI Lu-jiu,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0124096"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0124096", "name": "item", "description": "10.1371/journal.pone.0124096", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0124096"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-04-16T00:00:00Z"}}, {"id": "10.1371/journal.pone.0153415", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:19:28Z", "type": "Journal Article", "created": "2016-04-12", "title": "Seasonality, Rather Than Nutrient Addition Or Vegetation Types, Influenced Short-Term Temperature Sensitivity Of Soil Organic Carbon Decomposition", "description": "Open AccessLa r\u00e9ponse de la respiration microbienne de la d\u00e9composition du carbone organique du sol (COS) aux changements environnementaux joue un r\u00f4le cl\u00e9 dans la pr\u00e9diction des tendances futures de la concentration de CO2 atmosph\u00e9rique. Cependant, il n'est pas certain qu'il existe une tendance universelle dans la r\u00e9ponse de la respiration microbienne \u00e0 l'augmentation de la temp\u00e9rature et \u00e0 l'ajout de nutriments parmi les diff\u00e9rents types de v\u00e9g\u00e9tation. Dans cette \u00e9tude, les sols ont \u00e9t\u00e9 \u00e9chantillonn\u00e9s au printemps, en \u00e9t\u00e9, en automne et en hiver \u00e0 partir de cinq types de v\u00e9g\u00e9tation dominants, y compris les for\u00eats de pins, de m\u00e9l\u00e8zes et de bouleaux, les arbustes et les prairies, dans la r\u00e9gion de Saihanba, dans le nord de la Chine. Les \u00e9chantillons de sol de chaque saison ont \u00e9t\u00e9 incub\u00e9s \u00e0 1, 10 et 20 \u00b0C pendant 5 \u00e0 7 jours. L'azote (N\u00a0; 0,035 mM sous forme de NH4NO3) et le phosphore (P\u00a0; 0,03 mM sous forme de P2O5) ont \u00e9t\u00e9 ajout\u00e9s aux \u00e9chantillons de sol, et les r\u00e9ponses de la respiration microbienne du sol \u00e0 l'augmentation de la temp\u00e9rature et \u00e0 l'ajout de nutriments ont \u00e9t\u00e9 d\u00e9termin\u00e9es. Nous avons constat\u00e9 une tendance universelle selon laquelle la respiration microbienne du sol augmentait avec l'augmentation de la temp\u00e9rature, ind\u00e9pendamment de la saison d'\u00e9chantillonnage ou du type de v\u00e9g\u00e9tation. La sensibilit\u00e9 \u00e0 la temp\u00e9rature (indiqu\u00e9e par Q10, l'augmentation du taux de respiration avec une augmentation de 10\u00b0C de la temp\u00e9rature) de la respiration microbienne \u00e9tait plus \u00e9lev\u00e9e au printemps et en automne qu'en \u00e9t\u00e9 et en hiver, quel que soit le type de v\u00e9g\u00e9tation. Le Q10 \u00e9tait significativement corr\u00e9l\u00e9 positivement avec la biomasse microbienne et le rapport champignon\u00a0: bact\u00e9rie. La respiration microbienne (ou Q10) n'a pas r\u00e9pondu de mani\u00e8re significative \u00e0 l'addition d'azote ou de phosphore. Nos r\u00e9sultats sugg\u00e8rent que l'apport en nutriments \u00e0 court terme pourrait ne pas modifier le taux de d\u00e9composition du COS ou sa sensibilit\u00e9 \u00e0 la temp\u00e9rature, alors que l'augmentation de la temp\u00e9rature pourrait am\u00e9liorer consid\u00e9rablement la d\u00e9composition du COS au printemps et en automne, par rapport \u00e0 l'hiver et \u00e0 l'\u00e9t\u00e9.", "keywords": ["Biomass (ecology)", "Atmospheric Science", "Microbial population biology", "Larix", "Carbon Dynamics in Peatland Ecosystems", "Forests", "Agricultural and Biological Sciences", "Soil", "Soil water", "Pathology", "Carbon Feedback", "Biomass", "Betula", "Soil Microbiology", "2. Zero hunger", "Ecology", "Q10", "Respiration", "Q", "R", "Temperature", "Life Sciences", "Soil respiration", "04 agricultural and veterinary sciences", "Soil carbon", "Grassland", "Earth and Planetary Sciences", "Physical Sciences", "Respiration rate", "Medicine", "Seasons", "Vegetation (pathology)", "Research Article", "China", "Nitrogen", "Science", "Soil Science", "Environmental science", "Shrubland", "Genetics", "Arctic Permafrost Dynamics and Climate Change", "Soil Carbon Sequestration", "Biology", "Ecosystem", "Soil science", "Soil organic matter", "Soil Fertility", "Bacteria", "Fungi", "Botany", "15. Life on land", "Pinus", "Vegetation Change", "Carbon", "Agronomy", "13. Climate action", "FOS: Biological sciences", "Environmental Science", "Growing season", "0401 agriculture", " forestry", " and fisheries", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Nutrient"], "contacts": [{"organization": "Yu-Qi Qian, Fangliang He, Wei Wang,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0153415"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0153415", "name": "item", "description": "10.1371/journal.pone.0153415", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0153415"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-04-12T00:00:00Z"}}, {"id": "10.1371/journal.pone.0172767", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:19:28Z", "type": "Journal Article", "created": "2017-03-06", "title": "Effects Of Inorganic And Organic Amendment On Soil Chemical Properties, Enzyme Activities, Microbial Community And Soil Quality In Yellow Clayey Soil", "description": "Open AccessComprender los efectos de los componentes org\u00e1nicos e inorg\u00e1nicos externos sobre la fertilidad y la calidad del suelo es esencial para mejorar los suelos de bajo rendimiento. Realizamos un estudio de campo durante dos temporadas consecutivas de cultivo de arroz para investigar el efecto de la aplicaci\u00f3n de fertilizantes qu\u00edmicos (NPK), NPK m\u00e1s esti\u00e9rcol verde (NPKG), NPK m\u00e1s esti\u00e9rcol de cerdo (NPKM) y NPK m\u00e1s paja (NPKS) en el estado de nutrientes del suelo, las actividades enzim\u00e1ticas involucradas en el ciclo de C, N, P y S, la comunidad microbiana y los rendimientos de arroz del suelo arcilloso amarillo. Los resultados mostraron que los tratamientos fertilizados mejoraron significativamente los rendimientos de arroz durante las tres primeras temporadas experimentales. En comparaci\u00f3n con el tratamiento NPK, las enmiendas org\u00e1nicas produjeron efectos m\u00e1s favorables en la productividad del suelo. En particular, el tratamiento NPKM exhibi\u00f3 los niveles m\u00e1s altos de disponibilidad de nutrientes, carbono de biomasa microbiana (MBC), actividades de la mayor\u00eda de las enzimas y la comunidad microbiana. Esto dio como resultado el \u00edndice de calidad del suelo (SQI) m\u00e1s alto y el rendimiento del arroz, lo que indica una mejor fertilidad y calidad del suelo. Se observaron diferencias significativas en las actividades enzim\u00e1ticas y la comunidad microbiana entre los tratamientos, y el an\u00e1lisis de redundancia mostr\u00f3 que MBC y N disponible fueron los determinantes clave que afectaron las actividades enzim\u00e1ticas del suelo y la comunidad microbiana. La puntuaci\u00f3n de SQI del control no fertilizado (0,72) fue comparable a la de los tratamientos con NPK (0,77), NPKG (0,81) y NPKS (0,79), pero significativamente menor en comparaci\u00f3n con NPKM (0,85). La correlaci\u00f3n significativa entre el rendimiento del arroz y el SQI sugiere que el SQI puede ser \u00fatil para cuantificar los cambios en la calidad del suelo causados por diferentes pr\u00e1cticas de manejo agr\u00edcola. Los resultados indican que la aplicaci\u00f3n de NPK m\u00e1s esti\u00e9rcol de cerdo es la opci\u00f3n preferida para mejorar la acumulaci\u00f3n de COS, mejorar la fertilidad y calidad del suelo y aumentar el rendimiento de arroz en suelos arcillosos amarillos.", "keywords": ["Microbial population biology", "FOS: Political science", "Agricultural and Biological Sciences", "Soil", "Agricultural soil science", "Fertilizer", "Soil water", "Biomass", "Political science", "Soil Microbiology", "2. Zero hunger", "Organic Agriculture", "Soil Physical Properties", "Ecology", "Q", "Soil Quality", "R", "Soil Chemical Properties", "Life Sciences", "Straw", "Agriculture", "04 agricultural and veterinary sciences", "Hydrogen-Ion Concentration", "Soil carbon", "6. Clean water", "Chemistry", "Medicine", "Research Article", "Nitrogen", "Science", "Soil Science", "FOS: Law", "Environment", "Soil fertility", "Soil quality", "Meta-analysis in Ecology and Agriculture Research", "Genetics", "Biology", "Ecology", " Evolution", " Behavior and Systematics", "Soil Fertility", "Effects of Soil Compaction on Crop Production", "Bacteria", "15. Life on land", "Soil biodiversity", "Carbon", "Agronomy", "Manure", "FOS: Biological sciences", "Amendment", "0401 agriculture", " forestry", " and fisheries", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Law", "Nutrient"], "contacts": [{"organization": "Zhanjun Liu, Qinlei Rong, Wei Zhou, Gaofeng Liang,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0172767"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0172767", "name": "item", "description": "10.1371/journal.pone.0172767", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0172767"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-03-06T00:00:00Z"}}, {"id": "20.500.11850/706699", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:25:16Z", "type": "Journal Article", "created": "2024-11-11", "title": "Simulating                     Ips typographus                     L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Abstract. New (a)biotic conditions resulting from climate change are expected to change disturbance dynamics, such as windthrow, forest fires, droughts, and insect outbreaks, and their interactions. These unprecedented natural disturbance dynamics might alter the capability of forest ecosystems to buffer atmospheric CO2 increases, potentially leading forests to transform from sinks into sources of CO2. This study aims to enhance the ORCHIDEE land surface model to study the impacts of climate change on the dynamics of the bark beetle, Ips typographus, and subsequent effects on forest functioning. The Ips typographus outbreak model is inspired by previous work from Temperli et al.\u00a0(2013) for the LandClim landscape model. The new implementation of this model in ORCHIDEE r8627 accounts for key differences between ORCHIDEE and LandClim: (1)\u00a0the coarser spatial resolution of ORCHIDEE; (2)\u00a0the higher temporal resolution of ORCHIDEE; and (3)\u00a0the pre-existing process representation of windthrow, drought, and forest structure in ORCHIDEE. Simulation experiments demonstrated the capability of ORCHIDEE to simulate a variety of post-disturbance forest dynamics observed in empirical studies. Through an array of simulation experiments across various climatic conditions and windthrow intensities, the model was tested for its sensitivity to climate, initial disturbance, and selected parameter values. The results of these tests indicated that with a single set of parameters, ORCHIDEE outputs spanned the range of observed dynamics. Additional tests highlighted the substantial impact of incorporating Ips typographus outbreaks on carbon dynamics. Notably, the study revealed that modeling abrupt mortality events as opposed to a continuous mortality framework provides new insights into the short-term carbon sequestration potential of forests under disturbance regimes by showing that the continuous mortality framework tends to overestimate the carbon sink capacity of forests in the 20- to 50-year range in ecosystems under high disturbance pressure compared to scenarios with abrupt mortality events. This model enhancement underscores the critical need to include disturbance dynamics in land surface models to refine predictions of forest carbon dynamics in a changing climate.</p></article>", "keywords": ["cycle du carbone", "[SDE] Environmental Sciences", "http://aims.fao.org/aos/agrovoc/c_24242", "P40 - M\u00e9t\u00e9orologie et climatologie", "mod\u00e8le de simulation", "Ips typographus", "http://aims.fao.org/aos/agrovoc/c_16411", "http://aims.fao.org/aos/agrovoc/c_2391", "http://aims.fao.org/aos/agrovoc/c_1666", "K70 - D\u00e9g\u00e2ts caus\u00e9s aux for\u00eats et leur protection", "http://aims.fao.org/aos/agrovoc/c_6111", "http://aims.fao.org/aos/agrovoc/c_4549f84e", "perturbation de l'\u00e9cosyst\u00e8me", "surveillance \u00e9pid\u00e9miologique", "mod\u00e9lisation", "s\u00e9cheresse", "changement climatique", "QE1-996.5", "http://aims.fao.org/aos/agrovoc/c_230ab86c", "U10 - Informatique", " math\u00e9matiques et statistiques", "Geology", "H10 - Ravageurs des plantes", "http://aims.fao.org/aos/agrovoc/c_331583", "s\u00e9questration du carbone", "dynamique des populations", "[SDE]Environmental Sciences", "http://aims.fao.org/aos/agrovoc/c_30153", "http://aims.fao.org/aos/agrovoc/c_17299"]}, "links": [{"href": "https://doi.org/20.500.11850/706699"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geoscientific%20Model%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "20.500.11850/706699", "name": "item", "description": "20.500.11850/706699", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/20.500.11850/706699"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-11-11T00:00:00Z"}}, {"id": "10.60692/h5snt-86y57", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:24:07Z", "type": "Journal Article", "created": "2022-06-06", "title": "Effects of common European tree species on soil microbial resource limitation, microbial communities and soil carbon", "description": "Open Access\u0643\u0634\u0641\u062a \u0627\u0644\u062f\u0631\u0627\u0633\u0627\u062a \u0627\u0644\u062a\u064a \u0623\u062c\u0631\u064a\u062a \u0639\u0644\u0649 \u062a\u0623\u062b\u064a\u0631\u0627\u062a \u0623\u0646\u0648\u0627\u0639 \u0627\u0644\u0623\u0634\u062c\u0627\u0631 \u0639\u0644\u0649 \u0627\u0644\u062a\u0631\u0628\u0629 \u0639\u0646 \u062a\u0623\u062b\u064a\u0631 \u0643\u0628\u064a\u0631 \u0639\u0644\u0649 \u0645\u062e\u0632\u0648\u0646 \u0627\u0644\u0643\u0631\u0628\u0648\u0646 \u0627\u0644\u0639\u0636\u0648\u064a \u0641\u064a \u0627\u0644\u062a\u0631\u0628\u0629 (SOC) \u0648\u062a\u0648\u0632\u064a\u0639 \u0627\u0644\u0643\u0631\u0628\u0648\u0646 (C) \u0628\u064a\u0646 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\u0627\u0644\u0645\u062c\u062a\u0645\u0639 \u0627\u0644\u0645\u064a\u0643\u0631\u0648\u0628\u064a \u0647\u064a \u0645\u062d\u0631\u0643\u0627\u062a \u0645\u0647\u0645\u0629 \u0644\u0644\u0645\u062e\u0632\u0648\u0646\u0627\u062a \u0648\u0627\u0644\u062a\u0648\u0632\u064a\u0639 \u0627\u0644\u0631\u0623\u0633\u064a \u0644\u0645\u062e\u0632\u0648\u0646 \u0627\u0644\u0643\u0631\u0628\u0648\u0646 \u0627\u0644\u0639\u0636\u0648\u064a \u0641\u064a \u0627\u0644\u062a\u0631\u0628\u0629 \u0628\u064a\u0646 \u0623\u0646\u0648\u0627\u0639 \u0627\u0644\u0623\u0634\u062c\u0627\u0631 \u0648\u0628\u064a\u0646 \u0646\u0648\u0639\u064a\u0646 \u0645\u0646 \u0627\u0644\u062c\u0630\u0648\u0631 \u0627\u0644\u0641\u0637\u0631\u064a\u0629 \u0627\u0644\u0645\u0631\u062a\u0628\u0637\u0629 \u0628\u0647\u0627.", "keywords": ["Biomass (ecology)", "Microbial population biology", "Fagus sylvatica", "Soil Science", "Plant Science", "Plant litter", "Agricultural and Biological Sciences", "Mycorrhizal Fungi and Plant Interactions", "Soil water", "Genetics", "Monoculture", "Forest floor", "Saproxylic Insect Ecology and Forest Management", "Biology", "Beech", "Soil organic matter", "Soil Fertility", "Ecology", "Bacteria", "Picea abies", "Botany", "Life Sciences", "04 agricultural and veterinary sciences", "Soil carbon", "Agronomy", "Insect Science", "FOS: Biological sciences", "0401 agriculture", " forestry", " and fisheries", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Nutrient"]}, "links": [{"href": "https://doi.org/10.60692/h5snt-86y57"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.60692/h5snt-86y57", "name": "item", "description": "10.60692/h5snt-86y57", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.60692/h5snt-86y57"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-09-01T00:00:00Z"}}, {"id": "10.3389/fmicb.2016.01032", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:20:41Z", "type": "Journal Article", "created": "2016-06-30", "title": "Effects Of Short-Term Warming And Altered Precipitation On Soil Microbial Communities In Alpine Grassland Of The Tibetan Plateau", "description": "Open AccessSoil microbial communities are influenced by climate change drivers such as warming and altered precipitation. These changes create abiotic stresses, including desiccation and nutrient limitation, which act on microbes. However, our understanding of the responses of microbial communities to co-occurring climate change drivers is limited. We surveyed soil bacterial and fungal diversity and composition after a 1-year warming and altered precipitation manipulation in the Tibetan plateau alpine grassland. In isolation, warming and decreased precipitation treatments each had no significant effects on soil bacterial community structure; however, in combination of both treatments altered bacterial community structure (p = 0.03). The main effect of altered precipitation specifically impacted the relative abundances of Bacteroidetes and Gammaproteobacteria compared to the control, while the main effect of warming impacted the relative abundance of Betaproteobacteria. In contrast, the fungal community had no significant response to the treatments after 1-year. Using structural equation modeling (SEM), we found bacterial community composition was positively related to soil moisture. Our results indicate that short-term climate change could cause changes in soil bacterial community through taxonomic shifts. Our work provides new insights into immediate soil microbial responses to short-term stressors acting on an ecosystem that is particularly sensitive to global climate change.", "keywords": ["Abiotic component", "Microbial population biology", "Climate Change", "Soil Science", "Precipitation", "soil microbial community structure", "Microbiology", "Mathematical analysis", "Environmental science", "Agricultural and Biological Sciences", "Meteorology", "11. Sustainability", "FOS: Mathematics", "Genetics", "Climate change", "alpine grassland", "Biology", "Ecosystem", "2. Zero hunger", "Plateau (mathematics)", "Ecology", "Geography", "Bacteria", "Global warming", "Marine Microbial Diversity and Biogeography", "Life Sciences", "Microbial Diversity in Antarctic Ecosystems", "15. Life on land", "Grassland", "Community structure", "climate change", "pyrosequencing", "13. Climate action", "FOS: Biological sciences", "Environmental Science", "Physical Sciences", "soil moisture", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Mathematics"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2016.01032"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2016.01032", "name": "item", "description": "10.3389/fmicb.2016.01032", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2016.01032"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-06-30T00:00:00Z"}}, {"id": "10.3390/agriengineering7020029", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:20:46Z", "type": "Journal Article", "created": "2025-01-27", "title": "AI-Driven Insect Detection, Real-Time Monitoring, and Population Forecasting in Greenhouses", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Insecticide use in agriculture has significantly increased over the past decades, reaching 774 thousand metric tons in 2022. This widespread reliance on chemical insecticides has substantial economic, environmental, and human health consequences, highlighting the urgent need for sustainable pest management strategies. Early detection, insect monitoring, and population forecasting through Artificial Intelligence (AI)-based methods, can enable swift responsiveness, allowing for reduced but more effective insecticide use, mitigating traditional labor-intensive and error prone solutions. The main challenge is creating AI models that perform with speed and accuracy, enabling immediate farmer action. This study highlights the innovating potential of such an approach, focusing on the detection and prediction of black aphids under state-of-the-art Deep Learning (DL) models. A dataset of 220 sticky paper images was captured. The detection system employs a YOLOv10 DL model that achieved an accuracy of 89.1% (mAP50). For insect population prediction, random forests, gradient boosting, LSTM, and the ARIMA, ARIMAX, and SARIMAX models were evaluated. The ARIMAX model performed best with a Mean Square Error (MSE) of 75.61, corresponding to an average deviation of 8.61 insects per day between predicted and actual insect counts. For the visualization of the detection results, the DL model was embedded to a mobile application. This holistic approach supports early intervention strategies and sustainable pest management while offering a scalable solution for smart-agriculture environments.</p></article>", "keywords": ["machine learning", "Agriculture (General)", "insect detection", "deep learning", "black aphids", "mobile application", "TA1-2040", "Engineering (General). Civil engineering (General)", "insect population prediction", "S1-972"]}, "links": [{"href": "https://www.mdpi.com/2624-7402/7/2/29/pdf"}, {"href": "https://doi.org/10.3390/agriengineering7020029"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/AgriEngineering", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/agriengineering7020029", "name": "item", "description": "10.3390/agriengineering7020029", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/agriengineering7020029"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-01-27T00:00:00Z"}}, {"id": "10.5194/bg-12-5537-2015", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:21:37Z", "type": "Journal Article", "created": "2015-09-29", "title": "Responses Of Soil Microbial Communities And Enzyme Activities To Nitrogen And Phosphorus Additions In Chinese Fir Plantations Of Subtropical China", "description": "<p>Abstract. Nitrogen (N) and phosphorus (P) additions to forest ecosystems are known to influence various above-ground properties, such as plant productivity and composition, and below-ground properties, such as soil nutrient cycling. However, our understanding of how soil microbial communities and their functions respond to nutrient additions in subtropical plantations is still not complete. In this study, we added N and P to Chinese fir plantations in subtropical China to examine how nutrient additions influenced soil microbial community composition and enzyme activities. The results showed that most soil microbial properties were responsive to N and/or P additions, but responses often varied depending on the nutrient added and the quantity added. For instance, there were more than 30 % greater increases in the activities of \uffce\uffb2-glucosidase (\uffce\uffb2G) and N-acetyl-\uffce\uffb2-D-glucosaminidase (NAG) in the treatments that received nutrient additions compared to the control plot, whereas acid phosphatase (aP) activity was always higher (57 and 71 %, respectively) in the P treatment. N and P additions greatly enhanced the phospholipid fatty acids (PLFAs) abundance especially in the N2P (100 kg ha\uffe2\uff88\uff921 yr\uffe2\uff88\uff921 of N +50 kg ha\uffe2\uff88\uff921 yr\uffe2\uff88\uff921 of P) treatment; the bacterial PLFAs (bacPLFAs), fungal PLFAs (funPLFAs) and actinomycic PLFAs (actPLFAs) were about 2.5, 3 and 4 times higher, respectively, than in the CK (control). Soil enzyme activities were noticeably higher in November than in July, mainly due to seasonal differences in soil moisture content (SMC). \uffce\uffb2G or NAG activities were significantly and positively correlated with microbial PLFAs. These findings indicate that \uffce\uffb2G and NAG would be useful tools for assessing the biogeochemical transformation and metabolic activity of soil microbes. We recommend combined additions of N and P fertilizer to promote soil fertility and microbial activity in this kind of plantation.                     </p>", "keywords": ["Biogeochemical Cycling of Nutrients in Aquatic Ecosystems", "Microbial population biology", "Nitrogen", "Soil Science", "Organic chemistry", "Carbon Dynamics in Peatland Ecosystems", "Biochemistry", "Nutrient cycle", "Agricultural and Biological Sciences", "Life", "QH501-531", "Genetics", "Environmental Chemistry", "Biology", "QH540-549.5", "Ecosystem", "2. Zero hunger", "QE1-996.5", "Ecology", "Bacteria", "Nutrient Cycling", "Life Sciences", "Geology", "Phosphorus", "04 agricultural and veterinary sciences", "15. Life on land", "Agronomy", "6. Clean water", "Chemistry", "Phos", "Subtropics", "FOS: Biological sciences", "Environmental Science", "Physical Sciences", "0401 agriculture", " forestry", " and fisheries", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Ecosystem Functioning", "Animal science", "Nutrient"], "contacts": [{"organization": "Wenyi Dong, X. Y. Zhang, X. Y. Liu, Xiaoli Fu, F. S. Chen, H. M. Wang, Xiaoming Sun, Xuefa Wen,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5194/bg-12-5537-2015"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biogeosciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.5194/bg-12-5537-2015", "name": "item", "description": "10.5194/bg-12-5537-2015", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5194/bg-12-5537-2015"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-07-08T00:00:00Z"}}, {"id": "33740271", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:26:11Z", "type": "Journal Article", "created": "2021-03-19", "title": "Phylogeography of a gypsum endemic plant across its entire distribution range in the western Mediterranean", "description": "PREMISE<p>Gypsum soils in the Mediterranean Basin house large numbers of edaphic specialists that are adapted to stressful environments. The evolutionary history and standing genetic variation of these taxa have been influenced by the geological and paleoclimatic complexity of this area and the long\uffe2\uff80\uff90standing effect of human activities. However, little is known about the origin of Mediterranean gypsophiles and the factors affecting their genetic diversity and population structure.</p>METHODS<p>Using phylogenetic and phylogeographic approaches based on microsatellites and sequence data from nuclear and chloroplast regions, we evaluated the divergence time, genetic diversity, and population structure of 27 different populations of the widespread Iberian gypsophile Lepidium subulatum throughout its entire geographic range.</p>RESULTS<p>Lepidium subulatum diverged from its nearest relatives ~3 million years ago, and ITS and psbA/matK trees supported the monophyly of the species. These results suggest that both geological and climatic changes in the region around the Plio\uffe2\uff80\uff90Pleistocene promoted its origin, compared to other evolutionary processes. We found high genetic diversity in both nuclear and chloroplast markers, but a greater population structure in the chloroplast data. These results suggest that while seed dispersal is limited, pollen flow may be favored by the presence of numerous habitat patches that enhance the movement of pollinators.</p>CONCLUSIONS<p>Despite being an edaphic endemic, L. subulatum possesses high genetic diversity probably related to its relatively old age and high population sizes across its range. Our study highlights the value of using different markers to fully understand the phylogeographic history of plant species.</p", "keywords": ["0301 basic medicine", "Phylogeography", "0303 health sciences", "03 medical and health sciences", "Haplotypes", "DNA", " Chloroplast", "Genetic Variation", "cpDNA; genetic diversity; gypsophiles; Lepidium subulatum; nuclear microsatellites; phylogeography; pollen flow; population structure; seed dispersal.", "15. Life on land", "Calcium Sulfate", "Phylogeny"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/ajb2.1625"}, {"href": "https://doi.org/33740271"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/American%20Journal%20of%20Botany", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "33740271", "name": "item", "description": "33740271", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/33740271"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-01T00:00:00Z"}}, {"id": "10.5281/zenodo.6413955", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:23:21Z", "type": "Dataset", "title": "Realistic soil carbon sequestration considering food security and climate change", "description": "This dataset contains soil organic carbon stocks as described in Keel et al. Global Change Biology (submitted) Annual soil organic carbon (SOC) stocks (t C ha-1, 0-30 cm depth) of Swiss agricultural soils simulated with the model RothC for the years 2020-2100. Simulations were performed for 240 strata (regions with similar agricultural production types, climatic conditions and clay content). The SOC stocks are weighted averages across strata for the national scale. <br> Each column contains SOC stocks for a specific combination of a climate model chains (nine in total) and an emission scenario (three in total: RCP 26, RCP 45, RCP 85) (specified in column header). The results include simulated SOC stocks for a baseline scenario and five soil carbon sequestration (SCS) scenarios (cover crops, biochar amendment at two rates, biochar amendment based on biomass from two agroforestry scenarios). <br> The SCS scenarios were only performed on cropland, therefore there is only a single file for grassland (the baseline scenario). <br> All simulations (i.e. baseline as well as the five scenarios) account for changes in crop shares and organic matter additions associated with growing food demand as well as climate change. The scenarios are described in Keel et al. Global Change Biology (submitted) CL_baseline: Baseline scenario for cropland (CL) <br> GL_baseline: Baseline scenario for permanent grassland (GL)<br> CL_cover_crops: Cover crop scenario for cropland <br> CL_biochar_I: Biochar I scenario for cropland <br> CL_biochar_II: Biochar II scenario for cropland <br> CL_agroforestry_I: Agroforestry I scenario for cropland <br> CL_agroforestry_II: Agroforestry II scenario for cropland", "keywords": ["2. Zero hunger", "13. Climate action", "soil organic carbon", " negative emission technology", " carbon dioxide removal", " 4p1000", " climate change", " population growth", " food security", " soil carbon modelling", " biomass availability", " RothC", " biochar", " cover crops", " agroforestry", "15. Life on land", "7. Clean energy"], "contacts": [{"organization": "Keel, Sonja G.", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5281/zenodo.6413955"}, {"rel": "self", "type": "application/geo+json", "title": "10.5281/zenodo.6413955", "name": "item", "description": "10.5281/zenodo.6413955", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5281/zenodo.6413955"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-05T00:00:00Z"}}, {"id": "10.5281/zenodo.8407642", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-25T16:23:40Z", "type": "Report", "title": "Shedding light on the genetic diversity and evolutionary dynamics of geographic populations of Wisteria vein mosaic virus: a case study for the spread of emerging potyviruses in Europe?", "description": "Wisteria vein mosaic virus (WVMV) is a member of the genus Potyvirus associated with Wisteria mosaic disease (WMD), the most serious disease affecting Wisteria spp. In 2022, severe symptoms of WMD were observed on the leaves of a Chinese wisteria (W. sinensis) tree growing in an urban area in Apulia (Italy). The presence of WVMV was ascertained by RT-PCR analysis. Although the occurrence of WVMV in Italy had been posited in the late 1960s, no molecular information had been reported for any Italian isolate prior to this study. Subsequent phylogenetic analyses based on NIb and CP genes placed the WVMV Italian isolate within a large clade identified in the genus Potyvirus as the BCMV supergroup. Based on the increasing number of reports of the virus worldwide, we attempted an exploratory analysis of its genetic diversity and possible mechanisms that may have shaped its geographic population structure. Relying on the N-terminus of the CP, available for twenty WVMV isolates from Europe, Asia, and Oceania, sixteen different haplotypes were identified. A high haplotype diversity was found, particularly relevant in the European population. The measured dN/dS ratio led to the assumption that the target region is under purifying selection. Tests evaluating the neutrality of nucleotide variability showed different results for the European and Asian groups. The estimation of inter-population genetic differentiation showed a high level of gene flow between the two populations. Overall, our results provide a possible approach to understanding the mechanisms of WVMV emergence in Europe and draw attention to its further spread and the increasing threat of this and other neglected potyvirus species to the ornamental nursery sector.", "keywords": ["WVMV; selection pressure; population genetics; genetic diversity; gene flow; haplotype diversity; neutrality tests; FastME phylogeny", "3. Good health"], "contacts": [{"organization": "G. D'Attoma, A. Minafra", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5281/zenodo.8407642"}, {"rel": "self", "type": "application/geo+json", "title": "10.5281/zenodo.8407642", "name": "item", "description": "10.5281/zenodo.8407642", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5281/zenodo.8407642"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-09-18T00:00:00Z"}}, {"id": "10.5281/zenodo.8407643", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-25T16:23:40Z", "type": "Report", "title": "Shedding light on the genetic diversity and evolutionary dynamics of geographic populations of Wisteria vein mosaic virus: a case study for the spread of emerging potyviruses in Europe?", "description": "Wisteria vein mosaic virus (WVMV) is a member of the genus Potyvirus associated with Wisteria mosaic disease (WMD), the most serious disease affecting Wisteria spp. In 2022, severe symptoms of WMD were observed on the leaves of a Chinese wisteria (W. sinensis) tree growing in an urban area in Apulia (Italy). The presence of WVMV was ascertained by RT-PCR analysis. Although the occurrence of WVMV in Italy had been posited in the late 1960s, no molecular information had been reported for any Italian isolate prior to this study. Subsequent phylogenetic analyses based on NIb and CP genes placed the WVMV Italian isolate within a large clade identified in the genus Potyvirus as the BCMV supergroup. Based on the increasing number of reports of the virus worldwide, we attempted an exploratory analysis of its genetic diversity and possible mechanisms that may have shaped its geographic population structure. Relying on the N-terminus of the CP, available for twenty WVMV isolates from Europe, Asia, and Oceania, sixteen different haplotypes were identified. A high haplotype diversity was found, particularly relevant in the European population. The measured dN/dS ratio led to the assumption that the target region is under purifying selection. Tests evaluating the neutrality of nucleotide variability showed different results for the European and Asian groups. The estimation of inter-population genetic differentiation showed a high level of gene flow between the two populations. Overall, our results provide a possible approach to understanding the mechanisms of WVMV emergence in Europe and draw attention to its further spread and the increasing threat of this and other neglected potyvirus species to the ornamental nursery sector.", "keywords": ["WVMV; selection pressure; population genetics; genetic diversity; gene flow; haplotype diversity; neutrality tests; FastME phylogeny", "3. Good health"], "contacts": [{"organization": "G. D'Attoma, A. Minafra", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5281/zenodo.8407643"}, {"rel": "self", "type": "application/geo+json", "title": "10.5281/zenodo.8407643", "name": "item", "description": "10.5281/zenodo.8407643", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5281/zenodo.8407643"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-09-18T00:00:00Z"}}, {"id": "10.5334/ijic.s3500", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-25T16:23:41Z", "type": "Journal Article", "created": "2019-08-09", "title": "Management of malaria, pneumonia and diarrhoea: addressing the needs of                         under-fives via culturally appropriate community \u2013 level strategy in Benue                         state, Nigeria", "description": "Although children below the age of five years in sub-Saharan Africa bear a high burden from malaria, pneumonia, and diarrhoea, few studies have reported on the influence of culturally competent care within the context of integrated community case management and its effectiveness in improving health outcomes for vulnerable populations. Using the archival method of research as well as data gleaned from interviews of 341 caregivers of children under the age of five years in four wards of a local government area in Benue state, Nigeria; we note that individual and community characteristics have the potential of increasing the utilisation of integrated community case management services across households accessing the service. This paper argues that child health services are likely to improve when interventions utilise the dynamics of individual and community factors in meeting the needs of families within systems of care. The paper adopts a conceptual framework that is sympathetic to health service utilisation and the policies that give rise to the problems associated with the use of integrated community case management of childhood services as seen in many countries in sub-Saharan Africa, including Nigeria. It suggests the use of targeted measures to strengthen utilisation of child health services at the community level.", "keywords": ["Medicine (General)", "R5-920", "integrated community case management", "malaria", "diarrhea", "1. No poverty", "pneumonia", "10. No inequality", "nigeria", "vulnerable populations", "3. Good health"]}, "links": [{"href": "https://doi.org/10.5334/ijic.s3500"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/International%20Journal%20of%20Integrated%20Care", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.5334/ijic.s3500", "name": "item", "description": "10.5334/ijic.s3500", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5334/ijic.s3500"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-08-08T00:00:00Z"}}, {"id": "10045/140784", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:24:24Z", "type": "Journal Article", "created": "2024-02-12", "title": "Stronger compensatory thermal adaptation of soil microbial respiration with higher substrate availability", "description": "Abstract                <p>Ongoing global warming is expected to augment soil respiration by increasing the microbial activity, driving self-reinforcing feedback to climate change. However, the compensatory thermal adaptation of soil microorganisms and substrate depletion may weaken the effects of rising temperature on soil respiration. To test this hypothesis, we collected soils along a large-scale forest transect in eastern China spanning a natural temperature gradient, and we incubated the soils at different temperatures with or without substrate addition. We combined the exponential thermal response function and a data-driven model to study the interaction effect of thermal adaptation and substrate availability on microbial respiration and compared our results to those from two additional continental and global independent datasets. Modeled results suggested that the effect of thermal adaptation on microbial respiration was greater in areas with higher mean annual temperatures, which is consistent with the compensatory response to warming. In addition, the effect of thermal adaptation on microbial respiration was greater under substrate addition than under substrate depletion, which was also true for the independent datasets reanalyzed using our approach. Our results indicate that thermal adaptation in warmer regions could exert a more pronounced negative impact on microbial respiration when the substrate availability is abundant. These findings improve the body of knowledge on how substrate availability influences the soil microbial community\uffe2\uff80\uff93temperature interactions, which could improve estimates of projected soil carbon losses to the atmosphere through respiration.</p", "keywords": ["0301 basic medicine", "Atmospheric sciences", "Microbial population biology", "soil carbon decomposition", "global warming", "Global Warming", "Agricultural and Biological Sciences", "Soil carbon decomposition", "Soil", "Engineering", "Soil water", "Climate change", "Soil Microbiology", "2. Zero hunger", "Global and Planetary Change", "0303 health sciences", "Adaptation (eye)", "Q10", "Ecology", "Soil Water Retention", "Respiration", "Global warming", "Temperature", "Life Sciences", "Geology", "Soil respiration", "Soil carbon", "6. Clean water", "Physical Sciences", "Original Article", "570", "Mechanics and Transport in Unsaturated Soils", "Climate Change", "Soil Science", "Thermal Effects on Soil", "Environmental science", "03 medical and health sciences", "Microbial respiration", "microbial respiration", "Biowissenschaften; Biologie", "Genetics", "Biology", "Civil and Structural Engineering", "Soil science", "Soil Fertility", "Bacteria", "Global Forest Drought Response and Climate Change", "Botany", "FOS: Earth and related environmental sciences", "15. Life on land", "Carbon", "microbial thermal adaptation", "Microbial thermal adaptation", "13. Climate action", "FOS: Biological sciences", "Environmental Science", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Substrate (aquarium)", "Neuroscience"], "contacts": [{"organization": "Lili Qu, Chao Wang, Stefano Manzoni, Marina Dacal, Fernando T. Maestre, Edith Bai,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10045/140784"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20ISME%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10045/140784", "name": "item", "description": "10045/140784", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10045/140784"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "3137300487", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:25:59Z", "type": "Journal Article", "created": "2021-03-19", "title": "Phylogeography of a gypsum endemic plant across its entire distribution range in the western Mediterranean", "description": "PREMISE<p>Gypsum soils in the Mediterranean Basin house large numbers of edaphic specialists that are adapted to stressful environments. The evolutionary history and standing genetic variation of these taxa have been influenced by the geological and paleoclimatic complexity of this area and the long\uffe2\uff80\uff90standing effect of human activities. However, little is known about the origin of Mediterranean gypsophiles and the factors affecting their genetic diversity and population structure.</p>METHODS<p>Using phylogenetic and phylogeographic approaches based on microsatellites and sequence data from nuclear and chloroplast regions, we evaluated the divergence time, genetic diversity, and population structure of 27 different populations of the widespread Iberian gypsophile Lepidium subulatum throughout its entire geographic range.</p>RESULTS<p>Lepidium subulatum diverged from its nearest relatives ~3 million years ago, and ITS and psbA/matK trees supported the monophyly of the species. These results suggest that both geological and climatic changes in the region around the Plio\uffe2\uff80\uff90Pleistocene promoted its origin, compared to other evolutionary processes. We found high genetic diversity in both nuclear and chloroplast markers, but a greater population structure in the chloroplast data. These results suggest that while seed dispersal is limited, pollen flow may be favored by the presence of numerous habitat patches that enhance the movement of pollinators.</p>CONCLUSIONS<p>Despite being an edaphic endemic, L. subulatum possesses high genetic diversity probably related to its relatively old age and high population sizes across its range. Our study highlights the value of using different markers to fully understand the phylogeographic history of plant species.</p", "keywords": ["0301 basic medicine", "Phylogeography", "0303 health sciences", "03 medical and health sciences", "Haplotypes", "DNA", " Chloroplast", "Genetic Variation", "cpDNA; genetic diversity; gypsophiles; Lepidium subulatum; nuclear microsatellites; phylogeography; pollen flow; population structure; seed dispersal.", "15. Life on land", "Calcium Sulfate", "Phylogeny"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/ajb2.1625"}, {"href": "https://doi.org/3137300487"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/American%20Journal%20of%20Botany", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3137300487", "name": "item", "description": "3137300487", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3137300487"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-01T00:00:00Z"}}, {"id": "20.500.11850/345383", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:25:13Z", "type": "Journal Article", "created": "2019-06-03", "title": "Convergent evolution inArabidopsis halleriandArabidopsis arenosaon calamine metalliferous soils", "description": "<p>                     It is a plausible hypothesis that parallel adaptation events to the same environmental challenge should result in genetic changes of similar or identical effects, depending on the underlying fitness landscapes. However, systematic testing of this is scarce. Here we examine this hypothesis in two closely related plant species,                     Arabidopsis halleri                     and                     Arabidopsis arenosa                     , which co-occur at two calamine metalliferous (M) sites harbouring toxic levels of the heavy metals zinc and cadmium. We conduct individual genome resequencing alongside soil elemental analysis for 64 plants from eight populations on M and non-metalliferous (NM) soils, and identify genomic footprints of selection and local adaptation. Selective sweep and environmental association analyses indicate a modest degree of gene as well as functional network convergence, whereby the proximal molecular factors mediating this convergence mostly differ between site pairs and species. Notably, we observe repeated selection on identical single nucleotide polymorphisms in several                     A. halleri                     genes at two independently colonized M sites. Our data suggest that species-specific metal handling and other biological features could explain a low degree of convergence between species. The parallel establishment of plant populations on calamine M soils involves convergent evolution, which will probably be more pervasive across sites purposely chosen for maximal similarity in soil composition.                   </p>                   <p>This article is part of the theme issue \uffe2\uff80\uff98Convergent evolution in the genomics era: new insights and directions\uffe2\uff80\uff99.</p", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Part I: Population Genomics and Convergent Evolution within Species", "Arabidopsis", "selection", "adaptation", "15. Life on land", "Convergence; adaptation; evolution; selective sweep; selection", "Adaptation", " Physiological", "Biological Evolution", "Polymorphism", " Single Nucleotide", "selective sweep", "Soil", "Zinc", "03 medical and health sciences", "evolution", "Soil Pollutants", "Convergence", "Cadmium"]}, "links": [{"href": "https://www.biorxiv.org/content/10.1101/459362v1.full.pdf"}, {"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rstb.2018.0243"}, {"href": "https://doi.org/20.500.11850/345383"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Philosophical%20Transactions%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "20.500.11850/345383", "name": "item", "description": "20.500.11850/345383", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/20.500.11850/345383"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-11-03T00:00:00Z"}}, {"id": "2011.05846", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:25:19Z", "type": "Journal Article", "created": "2020-08-10", "title": "Mycorrhizal association of common European tree species shapes biomass and metabolic activity of bacterial and fungal communities in soil", "description": "Open AccessRecent studies have revealed effects of various tree species on soil physical and chemical properties. However, effects of various tree species on composition and activity of soil microbiota and the relevant controls remain poorly understood. We evaluated the influence of tree species associated with two different mycorrhizal types, ectomycorrhiza (EcM) and arbuscular mycorrhiza (AM), on growth, biomass and metabolic activity of soil fungal and bacterial communities using common garden tree species experiments throughout Denmark. The soil microbial communities differed between six European tree species as well as between EcM (beech, lime, oak and spruce) and AM (ash and maple) tree species. The EcM tree species had higher fungal biomass, fungal growth and bacterial biomass, while AM species showed higher bacterial growth. The results indicated that microbial community composition and functioning differed between groups of tree species with distinct litter qualities that generate soil C/N ratio and soil pH differences. The mycorrhizal association only partly explained litter quality and soil microbial species differences since lime was more similar to AM tree species. In addition, our results indicated that tree species-mediated soil pH and C/N ratio were the most important variables shaping microbial communities with a positive effect on bacterial and a negative effect on fungal growth rates. The results suggest that tree species-mediated microbial community composition and activity may be important drivers of the different vertical soil C distribution previously observed in AM and EcM tree species.", "keywords": ["2. Zero hunger", "FOS: Biological sciences", "Populations and Evolution (q-bio.PE)", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Quantitative Biology - Populations and Evolution"]}, "links": [{"href": "https://doi.org/2011.05846"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2011.05846", "name": "item", "description": "2011.05846", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2011.05846"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-01T00:00:00Z"}}, {"id": "28994014", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-05-25T16:25:40Z", "type": "Journal Article", "created": "2017-10-09", "title": "Intra- and inter-specific variations in chitin in lichens along a N-deposition gradient", "description": "The mechanisms of nitrogen (N) tolerance in lichens are not yet fully understood. Here, we investigated how the increase of chitin content is related with N excess at inter- and intra-specific levels, by using species with differing ecological N tolerances (the tolerant Xanthoria parietina and Parmotrema hypoleucinum and the sensitive Evernia prunastri and Usnea sp.) and thalli of X. parietina and P. hypoleucinum from sites with different availabilities of N of agricultural origin (livestock), as confirmed by lichen N content and \u03b415N. Nitrogen, chitin (N-containing compound), and ergosterol contents were measured in lichen thalli. Nitrogen and chitin contents were higher in tolerant species than those in sensitive ones (inter-specific level) and in thalli collected from the N-polluted site than in thalli from the clean site (intra-specific level). We suggest that chitin contributes to N stress tolerance in lichens, and that excess N can be partially stored as chitin (non-toxic form) in the cell walls of tolerant species.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Ascomycota", "Biological Variation", " Population", "Lichens", "Nitrogen", "Ergosterol", "Chitin", "15. Life on land"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11356-017-0378-3.pdf"}, {"href": "https://doi.org/28994014"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20and%20Pollution%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "28994014", "name": "item", "description": "28994014", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/28994014"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-10-09T00:00:00Z"}}, {"id": "2763769552", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:25:36Z", "type": "Journal Article", "created": "2017-10-09", "title": "Intra- and inter-specific variations in chitin in lichens along a N-deposition gradient", "description": "The mechanisms of nitrogen (N) tolerance in lichens are not yet fully understood. Here, we investigated how the increase of chitin content is related with N excess at inter- and intra-specific levels, by using species with differing ecological N tolerances (the tolerant Xanthoria parietina and Parmotrema hypoleucinum and the sensitive Evernia prunastri and Usnea sp.) and thalli of X. parietina and P. hypoleucinum from sites with different availabilities of N of agricultural origin (livestock), as confirmed by lichen N content and \u03b415N. Nitrogen, chitin (N-containing compound), and ergosterol contents were measured in lichen thalli. Nitrogen and chitin contents were higher in tolerant species than those in sensitive ones (inter-specific level) and in thalli collected from the N-polluted site than in thalli from the clean site (intra-specific level). We suggest that chitin contributes to N stress tolerance in lichens, and that excess N can be partially stored as chitin (non-toxic form) in the cell walls of tolerant species.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Ascomycota", "Biological Variation", " Population", "Lichens", "Nitrogen", "Ergosterol", "Chitin", "15. Life on land"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11356-017-0378-3.pdf"}, {"href": "https://doi.org/2763769552"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20and%20Pollution%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2763769552", "name": "item", "description": "2763769552", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2763769552"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-10-09T00:00:00Z"}}, {"id": "3048333309", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:25:53Z", "type": "Journal Article", "created": "2020-08-10", "title": "Mycorrhizal association of common European tree species shapes biomass and metabolic activity of bacterial and fungal communities in soil", "description": "Open AccessRecent studies have revealed effects of various tree species on soil physical and chemical properties. However, effects of various tree species on composition and activity of soil microbiota and the relevant controls remain poorly understood. We evaluated the influence of tree species associated with two different mycorrhizal types, ectomycorrhiza (EcM) and arbuscular mycorrhiza (AM), on growth, biomass and metabolic activity of soil fungal and bacterial communities using common garden tree species experiments throughout Denmark. The soil microbial communities differed between six European tree species as well as between EcM (beech, lime, oak and spruce) and AM (ash and maple) tree species. The EcM tree species had higher fungal biomass, fungal growth and bacterial biomass, while AM species showed higher bacterial growth. The results indicated that microbial community composition and functioning differed between groups of tree species with distinct litter qualities that generate soil C/N ratio and soil pH differences. The mycorrhizal association only partly explained litter quality and soil microbial species differences since lime was more similar to AM tree species. In addition, our results indicated that tree species-mediated soil pH and C/N ratio were the most important variables shaping microbial communities with a positive effect on bacterial and a negative effect on fungal growth rates. The results suggest that tree species-mediated microbial community composition and activity may be important drivers of the different vertical soil C distribution previously observed in AM and EcM tree species.", "keywords": ["2. Zero hunger", "FOS: Biological sciences", "Populations and Evolution (q-bio.PE)", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Quantitative Biology - Populations and Evolution"]}, "links": [{"href": "https://doi.org/3048333309"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3048333309", "name": "item", "description": "3048333309", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3048333309"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-01T00:00:00Z"}}, {"id": "35752240", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:26:13Z", "type": "Journal Article", "created": "2022-06-22", "title": "Integrated organic and inorganic fertilization and reduced irrigation altered prokaryotic microbial community and diversity in different compartments of wheat root zone contributing to improved nitrogen uptake and wheat yield", "description": "Open AccessThe effect of long-term water and integrated fertilization on prokaryotic microorganisms and their regulation for crop nutrient uptake remains unknown. Therefore, the impact of soil water and integrated fertilization after eight years on prokaryotic microbial communities in different compartments of root zone and their association with wheat nitrogen (N) absorption and yield were investigated. The results showed that compared with fertilization treatments (F), water regimes (W) more drastically modulated the prokaryotic microbial community structure and diversity in bulk soil, rhizosphere and endosphere. The increase of irrigation improved the prokaryotic diversity in the rhizosphere and endosphere while decreased the diversity in the bulk soil. Application of organic fertilizers significantly improved soil organic matter (SOM) and nutrient contents, increased rhizosphere and endophytic prokaryotic microbial diversity, and elevated the relative abundance of aerobic ammonia oxidation and nitrification-related functional microorganisms in rhizosphere and endosphere. Increasing irrigation elevated the relative abundance of functional microorganisms related to aerobic ammonia oxidation and nitrification in the rhizosphere and endosphere. Soil water content (SWC) and NH4+-N as well as NO3\u2212-N were key predictors of prokaryotic microbial community composition under W and F treatments, respectively. Appropriate application of irrigation and organic fertilizers increased the relative abundance of some beneficial bacteria such as Flavobacterium. Water and fertilization treatments regulated the prokaryotic microbial communities of bulk soil, rhizosphere and endosphere by altering SWC and SOM, and provided evidence for the modulation of prokaryotic microorganisms to promote nitrogen uptake and wheat yield under long-term irrigation and fertilization. Conclusively, the addition of organic manure (50 %) with inorganic fertilizers (50 %) and reduced amount of irrigation (pre-sowing and jointing-period irrigation) decreased the application amount of chemical fertilizers and water, while increased SOM and nutrient content, improved prokaryotic diversity, and changed prokaryotic microbial community structure in the wheat root zone, resulting in enhanced nutrient uptake and wheat yield.", "keywords": ["0106 biological sciences", "Yield", "Microorganism", "Microbial population biology", "Nitrogen", "Soil Science", "Organic chemistry", "Plant Science", "01 natural sciences", "Environmental science", "Agricultural and Biological Sciences", "Soil", "Symbiotic Nitrogen Fixation in Legumes", "Soil water", "Genetics", "Fertilizers", "Biology", "Irrigation", "Soil Microbiology", "Triticum", "2. Zero hunger", "Soil organic matter", "Soil Fertility", "Physicochemical factors", "Ecology", "Bacteria", "Microbiota", "Marine Microbial Diversity and Biogeography", "Water", "Life Sciences", "04 agricultural and veterinary sciences", "15. Life on land", "Nitrification", "Agronomy", "6. Clean water", "Chemistry", "Human fertilization", "13. Climate action", "Fertilization", "FOS: Biological sciences", "Environmental Science", "Physical Sciences", "Rhizosphere", "Bulk soil", "0401 agriculture", " forestry", " and fisheries", "Prokaryotic microorganisms", "Endosphere", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Nutrient"]}, "links": [{"href": "https://doi.org/35752240"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "35752240", "name": "item", "description": "35752240", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/35752240"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-10-01T00:00:00Z"}}, {"id": "3cba3946-2f1c-48eb-9ede-dfc476f0f17f", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[-17.92, -21.17], [-17.92, 67.59], [55.41, 67.59], [55.41, -21.17], [-17.92, -21.17]]]}, "properties": {"themes": [{"concepts": [{"id": "climatologyMeteorologyAtmosphere"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "Switzerland"}, {"id": "Norway"}, {"id": "EU27 (from 2020)"}, {"id": "Iceland"}, {"id": "United Kingdom"}, {"id": "France"}, {"id": "Slovakia"}, {"id": "Croatia"}, {"id": "Italy"}, {"id": "Lithuania"}, {"id": "Netherlands"}, {"id": "Austria"}, {"id": "Spain"}, {"id": "Luxembourg"}, {"id": "Sweden"}, {"id": "Portugal"}, {"id": "Belgium"}, {"id": "Czechia"}, {"id": "Bulgaria"}, {"id": "Hungary"}, {"id": "Romania"}, {"id": "Denmark"}, {"id": "Germany"}, {"id": "Finland"}, {"id": "Ireland"}, {"id": "Albania"}, {"id": "Montenegro"}, {"id": "Poland"}, {"id": "Serbia"}, {"id": "Slovenia"}, {"id": "North Macedonia"}, {"id": "Bosnia and Herzegovina"}, {"id": "Latvia"}, {"id": "Greece"}, {"id": "Estonia"}, {"id": "EU28 (2013-2020)"}, {"id": "Malta"}, {"id": "Cyprus"}, {"id": "EEA38 (from 2020)"}], "scheme": "Continents, countries, sea regions of the world."}, {"concepts": [{"id": "2021 6.4.3"}], "scheme": "EEA Management Plan"}, {"concepts": [{"id": "Climate adaptation"}, {"id": "Environmental health impacts"}, {"id": "Land use"}, {"id": "Buildings and construction"}, {"id": "Urban sustainability"}, {"id": "Extreme weather"}, {"id": "Environmental inequalities"}, {"id": "Climate change adaptation"}, {"id": "Water"}, {"id": "Climate mitigation"}], "scheme": "EEA topics"}, {"concepts": [{"id": "climate"}, {"id": "climate change impact"}, {"id": "risk"}, {"id": "climate change adaptation"}, {"id": "flooding"}, {"id": "disaster"}, {"id": "city"}, {"id": "school"}, {"id": "educational institution"}, {"id": "education"}, {"id": "disasters, accidents, risk"}, {"id": "major risk"}, {"id": "flood hazard"}, {"id": "natural risk"}, {"id": "flood"}, {"id": "health care"}, {"id": "hospital"}, {"id": "human health"}, {"id": "heat wave"}, {"id": "meteorology"}, {"id": "forest fire"}, {"id": "fire"}, {"id": "urban population"}, {"id": "population distribution"}, {"id": "riparian zone"}, {"id": "climate change"}, {"id": "unemployment"}, {"id": "urban environment, urban stress"}, {"id": "urban area"}, {"id": "land use"}, {"id": "sea level rise"}, {"id": "coastal flooding"}, {"id": "land cover"}, {"id": "green space"}, {"id": "soil"}], "scheme": "GEMET"}, {"concepts": [{"id": "Natural risk zones"}, {"id": "Statistical units"}, {"id": "Human health and safety"}, {"id": "Population distribution \u2014 demography"}, {"id": "Atmospheric conditions"}, {"id": "Meteorological geographical features"}, {"id": "Land cover"}], "scheme": "http://inspire.ec.europa.eu/theme"}, {"concepts": [{"id": "European"}], "scheme": "http://inspire.ec.europa.eu/metadata-codelist/SpatialScope"}], "updated": "2025-01-15T21:10:17.168611Z", "type": "Dataset", "language": "eng", "title": "Exposure to climate hazards", "description": "This series refers to datasets related to  the presence of people; livelihoods; species or ecosystems; environmental functions, services, and resources; infrastructure; or economic, social, or cultural assets in places and settings that could be adversely affected by climate hazards, including flooding, wildfires and urban heat island effects.\nThe datasets are part of the European Climate Adaptation Platform (Climate-ADAPT) accessible here: https://climate-adapt.eea.europa.eu/", "keywords": ["Switzerland", "Norway", "EU27 (from 2020)", "Iceland", "United Kingdom", "France", "Slovakia", "Croatia", "Italy", "Lithuania", "Netherlands", "Austria", "Spain", "Luxembourg", "Sweden", "Portugal", "Belgium", "Czechia", "Bulgaria", "Hungary", "Romania", "Denmark", "Germany", "Finland", "Ireland", "Albania", "Montenegro", "Poland", "Serbia", "Slovenia", "North Macedonia", "Bosnia and Herzegovina", "Latvia", "Greece", "Estonia", "EU28 (2013-2020)", "Malta", "Cyprus", "EEA38 (from 2020)", "2021 6.4.3", "Climate adaptation", "Environmental health impacts", "Land use", "Buildings and construction", "Urban sustainability", "Extreme weather", "Environmental inequalities", "Climate change adaptation", "Water", "Climate mitigation", "climate", "climate change impact", "risk", "climate change adaptation", "flooding", "disaster", "city", "school", "educational institution", "education", "disasters", " accidents", " risk", "major risk", "flood hazard", "natural risk", "flood", "health care", "hospital", "human health", "heat wave", "meteorology", "forest fire", "fire", "urban population", "population distribution", "riparian zone", "climate change", "unemployment", "urban environment", " urban stress", "urban area", "land use", "sea level rise", "coastal flooding", "land cover", "green space", "soil", "Natural risk zones", "Statistical units", "Human health and safety", "Population distribution \u2014 demography", "Atmospheric conditions", "Meteorological geographical features", "Land cover", "European"], "contacts": [{"name": null, "organization": "European Environment Agency", "position": null, "roles": ["custodian"], "phones": [{"value": null}], "emails": [{"value": "sdi@eea.europa.eu"}], "addresses": [{"deliveryPoint": ["Kongens Nytorv 6"], "city": "Copenhagen", "administrativeArea": "K", "postalCode": "1050", "country": "Denmark"}], "links": [{"href": null}]}], "denominator": "100000"}, "links": [{"href": "https://sdi.eea.europa.eu/public/catalogue-graphic-overview/38a57932-c278-45fe-bf68-3b658e3c75b4.png", "name": "preview", "description": "Web image thumbnail (URL)", "protocol": "WWW:LINK-1.0-http--image-thumbnail", "rel": "preview"}, {"rel": "self", "type": "application/geo+json", "title": "3cba3946-2f1c-48eb-9ede-dfc476f0f17f", "name": "item", "description": "3cba3946-2f1c-48eb-9ede-dfc476f0f17f", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3cba3946-2f1c-48eb-9ede-dfc476f0f17f"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"interval": ["1961-01-01T00:00:00Z", "1990-12-31T00:00:00Z"]}}, {"id": "PMC12085087", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:28:01Z", "type": "Journal Article", "created": "2024-11-06", "title": "Population Genomics Reveals Demographic History and Climate Adaptation in Japanese Arabidopsis halleri", "description": "Abstract                <p>Climate oscillations in the Quaternary forced species to major latitudinal or altitudinal range shifts. It has been suggested that adaptation concomitant with range shifts plays key roles in species responses during climate oscillations, but the role of selection for local adaptation to climatic changes remains largely unexplored. Here, we investigated population structure, demographic history and signatures of climate-driven selection based on genome-wide polymorphism data of 141 Japanese Arabidopsis halleri individuals, with European ones as outgroups. Coalescent-based analyses suggested a genetic differentiation between Japanese subpopulations since the Last Glacial Period (LGP), which would have contributed to shaping the current pattern of population structure. Population demographic analysis revealed the population size fluctuations in the LGP, which were particularly prominent since the subpopulations started to diverge (\uffe2\uff88\uffbc50, 000 years ago). The ecological niche modeling predicted the geographic or distribution range shifts from southern coastal regions to northern coastal and mountainous areas, possibly in association with the population size fluctuations. Through genome-wide association analyses of bioclimatic variables and selection scans, we investigated whether climate-associated loci are enriched in the extreme tails of selection scans, and demonstrated the prevailing signatures of selection, particularly toward a warmer climate in southern subpopulations and a drier environment in northern subpopulations, which may have taken place during or after the LGP. Our study highlights the importance of integrating climate associations, selection scans and population demographic analyses for identifying genomic signatures of population-specific adaptation, which would also help us predict the evolutionary responses to future climate changes.</p", "keywords": ["Demographic history", "Arabidopsis halleri", "Local adaptation", "Climate", "Climate Change", "Acclimatization", "Arabidopsis", "Adaptation", " Physiological", "[SDV.EE.BIO] Life Sciences [q-bio]/Ecology", " environment/Bioclimatology", "Genetics", " Population", "Special Issue - Regular Paper", "Japan", "[SDV.GEN.GPL] Life Sciences [q-bio]/Genetics/Plants genetics", "[SDV.BID.EVO] Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]", "[SDV.GEN.GPO] Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]", "Climate change", "Selection", " Genetic", "Population genomics", "Glacial cycles", "Genome", " Plant", "Genome-Wide Association Study"]}, "links": [{"href": "https://academic.oup.com/pcp/advance-article-pdf/doi/10.1093/pcp/pcae113/60430271/pcae113.pdf"}, {"href": "https://doi.org/PMC12085087"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20And%20Cell%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC12085087", "name": "item", "description": "PMC12085087", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC12085087"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-09-30T00:00:00Z"}}, {"id": "d2ed6e50-88fd-11da-a88f-000d939bc5d8", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[21.82, 3.49], [21.82, 22.23], [38.6, 22.23], [38.6, 3.49], [21.82, 3.49]]]}, "properties": {"themes": [{"concepts": [{"id": "biota"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}], "updated": "2011-12-24T10:33:41", "language": "eng", "title": "Main Agricultural Regions of Sudan", "description": "Include:\nAnimal density,\nGame and their main habitat,\nMain agricultural regions,\nPrincipal agricultural products,\nExisting hafirs constructed by Soil Conservation Section 1947-56& 1956-65", "formats": [{"name": "WWW:DOWNLOAD-1.0-http--download"}], "keywords": ["All Subjects", "Animal Population", "Game Reserves", "Crops", "Cultivated Land", "Hafirs", "Sudan"], "contacts": [{"name": null, "organization": null, "position": null, "roles": ["originator"], "phones": [{"value": null}], "emails": [{"value": null}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": null}]}, {"name": null, "organization": "FAO - UN AGL Documentation Center", "position": null, "roles": ["pointOfContact"], "phones": [{"value": null}], "emails": [{"value": "AGL-Documentation-Centre@fao.org"}], "addresses": [{"deliveryPoint": ["Via delle Terme di Caracalla"], "city": "Rome", "administrativeArea": null, "postalCode": "00100", "country": "Italy"}], "links": [{"href": null}]}], "denominator": "8000000"}, "links": [{"href": "https://storage.googleapis.com/fao-maps-catalog-data/uuid/d2ed6e50-88fd-11da-a88f-000d939bc5d8/resources/sudan-1416-main_aggricultural_regions_of_sudan-land_use-1-8,000,000.jpg", "name": "sudan-1416-main_aggricultural_regions_of_sudan-land_use-1-8,000,000.jpg", "protocol": "WWW:DOWNLOAD-1.0-http--download", "rel": null}, {"href": "https://storage.googleapis.com/fao-maps-catalog-data/uuid/d2ed6e50-88fd-11da-a88f-000d939bc5d8/thumbnail/sudan-1416-main_aggricultural_regions_of_sudan-land_use-1-8,000,000_s.png", "name": "preview", "description": "Web image thumbnail (URL)", "protocol": "WWW:LINK-1.0-http--image-thumbnail", "rel": "preview"}, {"href": "https://storage.googleapis.com/fao-maps-catalog-data/uuid/d2ed6e50-88fd-11da-a88f-000d939bc5d8/large_thumbnail/sudan-1416-main_aggricultural_regions_of_sudan-land_use-1-8,000,000.jpg", "name": "preview", "description": "Web image thumbnail (URL)", "protocol": "WWW:LINK-1.0-http--image-thumbnail", "rel": "preview"}, {"rel": "self", "type": "application/geo+json", "title": "d2ed6e50-88fd-11da-a88f-000d939bc5d8", "name": "item", "description": "d2ed6e50-88fd-11da-a88f-000d939bc5d8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/d2ed6e50-88fd-11da-a88f-000d939bc5d8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date-time": "2011-12-24T10:33:41Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=+Population&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=+Population&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=+Population&", "hreflang": "en-US"}, {"rel": "last", "type": "application/geo+json", "title": "items (last)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=+Population&offset=45", "hreflang": "en-US"}], "numberMatched": 45, "numberReturned": 45, "distributedFeatures": [], "timeStamp": "2026-05-26T00:12:43.414534Z"}