{"type": "FeatureCollection", "features": [{"id": "2164/19907", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:22:59Z", "type": "Journal Article", "created": "2022-11-25", "title": "How does management affect soil C sequestration and greenhouse gas fluxes in boreal and temperate forests? \u2013 A review", "description": "Open AccessThis review has been supported by the grant Holistic management practices, modelling and monitoring for European forest soils \u2013 HoliSoils (EU Horizon 2020 Grant Agreement No 101000289) and the Academy of Finland Fellow project (330136, B. Adamczyk). In addition to the HoliSoils consortium partners, Dr. Abramoff contributed on this study and her work was supported by the United States Department of Energy, Office of Science, Office of Biological and Environmental Research. Oak Ridge National Laboratory is managed by UT-Battelle, LLC, for the United States Department of Energy under contract DE-AC05- 00OR22725.", "keywords": ["[SDE] Environmental Sciences", "330", "550", "Peatland hydrology management", "CLIMATE-CHANGE ADAPTATION", "WOOD ASH APPLICATION", "530", "Greenhouse gas", "SITE PREPARATION", "630", "12. Responsible consumption", "BELOW-GROUND CARBON", "11. Sustainability", "SDG 13 - Climate Action", "NITROGEN-FERTILIZATION", "SDG 15 - Life on Land", "2. Zero hunger", "PONDEROSA PINE", "GE", "PLANT LITTER DECOMPOSITION", "NORWAY SPRUCE", "04 agricultural and veterinary sciences", "15. Life on land", "004", "Forest fertilization", "Harvesting practices", "ORGANIC-MATTER", "Forest fire management", "13. Climate action", "[SDE]Environmental Sciences", "Forest soil carbon management", "0401 agriculture", " forestry", " and fisheries", "MICROBIAL COMMUNITY STRUCTURE", "GE Environmental Sciences"]}, "links": [{"href": "https://doi.org/2164/19907"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Forest%20Ecology%20and%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2164/19907", "name": "item", "description": "2164/19907", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2164/19907"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-02-01T00:00:00Z"}}, {"id": "2164/9808", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:22:59Z", "type": "Journal Article", "created": "2017-11-22", "title": "Fluid flow in porous media using image-based modelling to parametrize Richards' equation", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The parameters in Richards' equation are usually calculated from experimentally measured values of the soil\u2013water characteristic curve and saturated hydraulic conductivity. The complex pore structures that often occur in porous media complicate such parametrization due to hysteresis between wetting and drying and the effects of tortuosity. Rather than estimate the parameters in Richards' equation from these indirect measurements, image-based modelling is used to investigate the relationship between the pore structure and the parameters. A three-dimensional, X-ray computed tomography image stack of a soil sample with voxel resolution of 6\u2009\u03bcm has been used to create a computational mesh. The Cahn\u2013Hilliard\u2013Stokes equations for two-fluid flow, in this case water and air, were applied to this mesh and solved using the finite-element method in COMSOL Multiphysics. The upscaled parameters in Richards' equation are then obtained via homogenization. The effect on the soil\u2013water retention curve due to three different contact angles, 0\u00b0, 20\u00b0 and 60\u00b0, was also investigated. The results show that the pore structure affects the properties of the flow on the large scale, and different contact angles can change the parameters for Richards' equation.</p></article>", "keywords": ["0301 basic medicine", "Richards\u2019 equation", "330", "EP/M020355/1", "QH301 Biology", "PDEs in connection with fluid mechanics", "530", "QH301", "03 medical and health sciences", "porous media", "646809DIMR", "Journal Article", "BB/L025620/1", "BB/J00868/1", "NE/L00237/1", "Research Articles", "0303 health sciences", "Civil_env_eng", "Natural Environment Research Council (NERC)", "Flows in porous media; filtration; seepage", "621", "6. Clean water", "004", "620", "3. Good health", "image-based modelling", "Richards' equation", "Engineering and Physical Sciences Research Council (EPSRC)", "Biotechnology and Biological Sciences Research Council (BBSRC)", "BB/P004180/1", "BB/L025825/1", "European Research Council", "Finite element methods applied to problems in fluid mechanics"]}, "links": [{"href": "https://repository.uwl.ac.uk/id/eprint/4979/1/20170178.full.pdf"}, {"href": "https://eprints.soton.ac.uk/415076/1/ImageBasedRichardsPRST.pdf"}, {"href": "https://eprints.soton.ac.uk/415076/2/SupplementaryFigure.pdf"}, {"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rspa.2017.0178"}, {"href": "https://doi.org/2164/9808"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20Royal%20Society%20A%3A%20Mathematical%2C%20Physical%20and%20Engineering%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2164/9808", "name": "item", "description": "2164/9808", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2164/9808"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-11-01T00:00:00Z"}}, {"id": "2164/24787", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:22:59Z", "type": "Journal Article", "created": "2024-10-08", "title": "Land use effects on soil microbiome composition and traits with consequences for soil carbon cycling", "description": "Abstract                <p>The soil microbiome determines the fate of plant-fixed carbon. The shifts in soil properties caused by land use change leads to modifications in microbiome function, resulting in either loss or gain of soil organic carbon (SOC). Soil pH is the primary factor regulating microbiome characteristics leading to distinct pathways of microbial carbon cycling, but the underlying mechanisms remain understudied. Here, the taxa-trait relationships behind the variable fate of SOC were investigated using metaproteomics, metabarcoding, and a 13C-labeled litter decomposition experiment across two temperate sites with differing soil pH each with a paired land use intensity contrast. 13C incorporation into microbial biomass increased with land use intensification in low-pH soil but decreased in high-pH soil, with potential impact on carbon use efficiency in opposing directions. Reduction in biosynthesis traits was due to increased abundance of proteins linked to resource acquisition and stress tolerance. These trait trade-offs were underpinned by land use intensification-induced changes in dominant taxa with distinct traits. We observed divergent pH-controlled pathways of SOC cycling. In low-pH soil, land use intensification alleviates microbial abiotic stress resulting in increased biomass production but promotes decomposition and SOC loss. In contrast, in high-pH soil, land use intensification increases microbial physiological constraints and decreases biomass production, leading to reduced necromass build-up and SOC stabilization. We demonstrate how microbial biomass production and respiration dynamics and therefore carbon use efficiency can be decoupled from SOC highlighting the need for its careful consideration in managing SOC storage for soil health and climate change mitigation.</p", "keywords": ["soil health", "Supplementary Data", "QH301 Biology", "carbon use efficiency", "carbon cycling", "https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/ismecommun/4/1/10.1093_ismeco_ycae116/1/otu_table_16s_table_s1_ycae116.xlsx?Expires=1737538557&Signature=3IutEpMaJIknJFjSbheOQYWpAwXt2atlN4YtPR7BTaTGf3jrf1M6yHgYzlnrttKlwpbFcwz-IqYq96oubC5FxfBQQyiIC0H-az-D~Bkstxc9XHkEmERELO~nurTlszmUndzm3jLsKF05x00PNsiNFlGKUhlsMB6wRmyO3v3GNBqHQVdswXZ3UAjfXvqqinyDLK54UCxfLk8eKpcfFnvVctxQ8Hrk3gP-eMFToKDlXgPD4MXGrdegvcZblx6g8FAvJruLIG1NWIRJ6wzx6HcmAYiZDJcGosKrdjMBIznM8YIJjBrfWwhGvjh15Z7MJnsUWn8PjxLjXfww29q-YfQnw__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA", "https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/ismecommun/4/1/10.1093_ismeco_ycae116/1/otu_table_18s_table_s2_ycae116.xlsx?Expires=1737538557&Signature=ZVWC9BaJ2MOsxOOfzrmd-9nuLAy5yHOmeqJQmKHhQ1z7mXxXITIYAvM8BpVkEkQHB7Bo-6dNEm5FlC6eAuTroyq-dvMW3PD6MNP9SN5KgwSrKUeHM6IKNhzav6Q4zd48B95IPreN5UKQTTVPrphpdOxfdVKYKxD3qOMdWqmHXt-IAD~W80PJ0BjvpHXPQ0pYCmGInVv1Fe-L3k~OKo80rD0xtncnBCFRd8DVHTIY5JLjJr4-E~M3Gainkbz2AVLZwys3S6MMEboS8vKSj~rG34Z04ByT6dBjp0XDj2H9K7WjXlEqOoPIwUWUUfcVvn4N5wZ6R6YFZr9mk4qTZKdEow__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA", "004", "soil organic carbon", "QH301", "soil pH", "13C labelling", "land use intensity", "soil microbiome", "metabarcoding", "SDG 13 - Climate Action", "metaproteomics", "Original Article", "SDG 15 - Life on Land"]}, "links": [{"href": "https://doi.org/2164/24787"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/ISME%20Communications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2164/24787", "name": "item", "description": "2164/24787", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2164/24787"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "3046701632", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:23:19Z", "type": "Journal Article", "created": "2020-07-30", "title": "Maskara: Compilation of a Masking Countermeasure With Optimized Polynomial Interpolation", "description": "Side-channel attacks are amongst the major threats for embedded systems and IoT devices. Masking is one of the most used countermeasure against such attacks, but its application remains a difficult process. We propose a target-independent approach for applying a first-order Boolean masking countermeasure during compilation, on the static single assignment (SSA) form. Contrary to the state-of-the art automated approaches that require to simplify the control flow of the input program, our approach supports regular control-flow program structures. Moreover, our compiler is the first to automatically mask table lookups using a polynomial interpolation approach. We also present new optimizations to speedup the evaluation of polynomials: we reduce the number of terms of the polynomial, and we accelerate finite-field multiplication. We show that our approach is faster than the standard masked table approach with mask refresh after each access, with speedups up to    $ times 2.4$    in our experiments. Finally, using a formal verification approach, we show that the compiled machine code is secure, i.e., that all intermediate computations are statistically independent of the secrets.", "keywords": ["0211 other engineering and technologies", "0202 electrical engineering", " electronic engineering", " information engineering", "[INFO]Computer Science [cs]", "02 engineering and technology", "[INFO] Computer Science [cs]", "004", "620"]}, "links": [{"href": "http://xplorestaging.ieee.org/ielx7/43/9244237/09153055.pdf?arnumber=9153055"}, {"href": "https://doi.org/3046701632"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/IEEE%20Transactions%20on%20Computer-Aided%20Design%20of%20Integrated%20Circuits%20and%20Systems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3046701632", "name": "item", "description": "3046701632", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3046701632"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-01T00:00:00Z"}}, {"id": "3109710554", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:23:21Z", "type": "Journal Article", "created": "2020-11-24", "title": "Sorting Out the Recent Historiography of Development Assistance: Consolidation and New Directions in the Field", "keywords": ["0601 history and archaeology", "06 humanities and the arts", "004"], "contacts": [{"organization": "Kalinovsky, A.M.", "roles": ["creator"]}]}, "links": [{"href": "http://journals.sagepub.com/doi/pdf/10.1177/0022009420962315"}, {"href": "https://doi.org/3109710554"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Contemporary%20History", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3109710554", "name": "item", "description": "3109710554", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3109710554"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-24T00:00:00Z"}}, {"id": "3161294357", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:23:24Z", "type": "Journal Article", "created": "2021-05-11", "title": "Estimating Farm Wheat Yields from NDVI and Meteorological Data", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Information on crop yield at scales ranging from the field to the global level is imperative for farmers and decision makers. The current data sources to monitor crop yield, such as regional agriculture statistics, are often lacking in spatial and temporal resolution. Remotely sensed vegetation indices (VIs) such as NDVI are able to assess crop yield using empirical modelling strategies. Empirical NDVI-based crop yield models were evaluated by comparing the model performance with similar models used in different regions. The integral NDVI and the peak NDVI were weak predictors of winter wheat yield in northern Belgium. Winter wheat (Triticum aestivum) yield variability was better predicted by monthly precipitation during tillering and anthesis than by NDVI-derived yield proxies in the period from 2016 to 2018 (R2 = 0.66). The NDVI series were not sensitive enough to yield affecting weather conditions during important phenological stages such as tillering and anthesis and were weak predictors in empirical crop yield models. In conclusion, winter wheat yield modelling using NDVI-derived yield proxies as predictor variables is dependent on the environment.</p></article>", "keywords": ["yield estimation", "PREDICTION", "NDVI", "Triticum aestivum", "0703 Crop and Pasture Production", "3002 Agriculture", " land and farm management", "3004 Crop and pasture production", "Belgium", "0502 Environmental Science and Management", "<i>Triticum aestivum</i>", "2. Zero hunger", "Science & Technology", "S", "Plant Sciences", "Agriculture", "weather impact", "04 agricultural and veterinary sciences", "WINTER-WHEAT", "15. Life on land", "Agronomy", "winter wheat", "MODEL", "RESOLUTION", "SENTINEL-2", "0401 agriculture", " forestry", " and fisheries", "LANDSAT 8", "Life Sciences & Biomedicine"]}, "links": [{"href": "http://www.mdpi.com/2073-4395/11/5/946/pdf"}, {"href": "https://doi.org/3161294357"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3161294357", "name": "item", "description": "3161294357", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3161294357"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-05-11T00:00:00Z"}}, {"id": "50|od______3515::8a7c258c7e04e2ddacf2a996575bc407", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:23:51Z", "type": "Report", "title": "Accelerating exp-log based finite field multiplication", "description": "Finite field multiplication is widely used for masking countermeasuresagainst side-channel attacks. The execution time of finite field multipli-cation implementation is critical as it greatly impacts the overhead of thecountermeasure. In this context, the use of exp-log tables is popular forthe implementation of finite field multiplication. Yet, its performance isaffected by the need for particular code to handle the case where one ofthe operands equals zero, as log is undefined for zero. As noticed by tworecent papers, the zero case can be managed without any extra code byextending the exp table and setting log[0] to a large-enough value. Themultiplication of a and b then becomes as simple as: exp[log[a] + log[b]].In this paper, we compare this approach with other implementations offinite field multiplication and show that it provides a good trade-off be-tween memory use and execution time.", "keywords": ["[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]", "[INFO.INFO-ES]Computer Science [cs]/Embedded Systems", "004", "620", "[INFO.INFO-ES] Computer Science [cs]/Embedded Systems", "[INFO.INFO-CR] Computer Science [cs]/Cryptography and Security [cs.CR]"], "contacts": [{"organization": "Belleville, Nicolas", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/50|od______3515::8a7c258c7e04e2ddacf2a996575bc407"}, {"rel": "self", "type": "application/geo+json", "title": "50|od______3515::8a7c258c7e04e2ddacf2a996575bc407", "name": "item", "description": "50|od______3515::8a7c258c7e04e2ddacf2a996575bc407", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/50|od______3515::8a7c258c7e04e2ddacf2a996575bc407"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-01T00:00:00Z"}}, {"id": "51baaed08d3cb4bb4a3f723b3c85971d", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:23:53Z", "type": "Report", "title": "Accelerating exp-log based finite field multiplication", "description": "Finite field multiplication is widely used for masking countermeasuresagainst side-channel attacks. The execution time of finite field multipli-cation implementation is critical as it greatly impacts the overhead of thecountermeasure. In this context, the use of exp-log tables is popular forthe implementation of finite field multiplication. Yet, its performance isaffected by the need for particular code to handle the case where one ofthe operands equals zero, as log is undefined for zero. As noticed by tworecent papers, the zero case can be managed without any extra code byextending the exp table and setting log[0] to a large-enough value. Themultiplication of a and b then becomes as simple as: exp[log[a] + log[b]].In this paper, we compare this approach with other implementations offinite field multiplication and show that it provides a good trade-off be-tween memory use and execution time.", "keywords": ["[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]", "[INFO.INFO-ES]Computer Science [cs]/Embedded Systems", "004", "620", "[INFO.INFO-ES] Computer Science [cs]/Embedded Systems", "[INFO.INFO-CR] Computer Science [cs]/Cryptography and Security [cs.CR]"], "contacts": [{"organization": "Belleville, Nicolas", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/51baaed08d3cb4bb4a3f723b3c85971d"}, {"rel": "self", "type": "application/geo+json", "title": "51baaed08d3cb4bb4a3f723b3c85971d", "name": "item", "description": "51baaed08d3cb4bb4a3f723b3c85971d", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/51baaed08d3cb4bb4a3f723b3c85971d"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-01T00:00:00Z"}}, {"id": "9a729c8ee1692a321558920ec9ec8070", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:24:37Z", "type": "Report", "title": "R\u00e4ume in Bewegung \u2013 Narrative und Chronotopik in Christoph Ransmayrs Roman Der fliegende Berg,", "keywords": ["Ethics", "Ethik", "605004 Cultural studies", "6031 Philosophie", "602054 Vergleichende Sprachwissenschaft", "605004 Kulturwissenschaft", "602042 Romanistik", "602042 Romance studies", "602014 Germanistik", "602014 German studies", "6031 Philosophy", "602054 Comparative linguistics"], "contacts": [{"organization": "M\u00fcller-Funk, Wolfgang", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/9a729c8ee1692a321558920ec9ec8070"}, {"rel": "self", "type": "application/geo+json", "title": "9a729c8ee1692a321558920ec9ec8070", "name": "item", "description": "9a729c8ee1692a321558920ec9ec8070", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/9a729c8ee1692a321558920ec9ec8070"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-01-01T00:00:00Z"}}, {"id": "PMC10468943", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:24:57Z", "type": "Journal Article", "created": "2023-07-26", "title": "Statistical Effective Diffusivity Estimation in Porous Media Using an Integrated On-site Imaging Workflow for Synchrotron Users", "description": "Abstract<p>Transport in porous media plays an essential role for many physical, engineering, biological and environmental processes. Novel synchrotron imaging techniques and image-based models have enabled more robust quantification of geometric structures that influence transport through the pore space. However, image-based modelling is computationally expensive, and end users often require, while conducting imaging campaign, fast and agile bulk-scale effective parameter estimates that account for the pore-scale details. In this manuscript we enhance a pre-existing image-based model solver known as OpenImpala to estimate bulk-scale effective transport parameters. In particular, the boundary conditions and equations in OpenImpala were modified in order to estimate the effective diffusivity in an imaged system/geometry via a formal multi-scale homogenisation expansion. Estimates of effective pore space diffusivity were generated for a range of elementary volume sizes to estimate when the effective diffusivity values begin to converge to a single value. Results from OpenImpala were validated against a commercial finite element method package COMSOL Multiphysics (abbreviated as COMSOL). Results showed that the effective diffusivity values determined with OpenImpala were similar to those estimated by COMSOL. Tests on larger domains comparing a full image-based model to a homogenised (geometrically uniform) domain that used the effective diffusivity parameters showed differences below 2 % error, thus verifying the accuracy of the effective diffusivity estimates. Finally, we compared OpenImpala\uffe2\uff80\uff99s parallel computing speeds to COMSOL. OpenImpala consistently ran simulations within fractions of minutes, which was two orders of magnitude faster than COMSOL providing identical supercomputing specifications. In conclusion, we demonstrated OpenImpala\uffe2\uff80\uff99s utility as part of an on-site tomography processing pipeline allowing for fast and agile assessment of porous media processes and to guide imaging campaigns while they are happening at synchrotron beamlines.</p", "keywords": ["Image-based modelling", "Porous media", "Homogenisation", "Numerical methods", "Article", "004"]}, "links": [{"href": "https://eprints.soton.ac.uk/481345/1/s11242_023_01993_7.pdf"}, {"href": "https://doi.org/PMC10468943"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Transport%20in%20Porous%20Media", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC10468943", "name": "item", "description": "PMC10468943", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC10468943"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-07-26T00:00:00Z"}}, {"id": "PMC8963283", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:25:04Z", "type": "Journal Article", "created": "2022-01-26", "title": "GenomeTornadoPlot: a novel R package for CNV visualization and focality analysis", "description": "Abstract                                   Motivation                   <p>Analysis of focal copy number variations (CNVs) is highly relevant for cancer research, as they pinpoint driver genes. More specifically, due to selective pressure oncogenes and tumor suppressor genes are more often affected by these events than neighboring passengers. In cases where multiple candidates co-reside in a genomic locus, careful comparison is required to either identify multigenic minimally deleted regions of synergistic co-mutations, or the true single driver gene. The study of focal CNVs in large cancer genome cohorts requires specialized visualization and statistical analysis.</p>                                                   Results                   <p>We developed the GenomeTornadoPlot R-package which generates gene-centric visualizations of CNV types, locations and lengths from cohortwise NGS data. Furthermore, the software enables the pairwise comparison of proximate genes to identify co-mutation patterns or driver-passenger hierarchies. The visual examination provided by GenomeTornadoPlot is further supported by adaptable local and global focality scoring. Integrated into the GenomeTornadoPlot R-Package is the comprehensive PCAWG database of CNVs, comprising 2976 cancer genome entities from 46 cohorts of the Pan-cancer Analysis of Whole Genomes project. The GenomeTornadoPlot R-package can be used to perform exploratory or hypothesis-driven analyses on the basis of the PCAWG data or in combination with data provided by the user.</p>                                                   Availability and implementation                   <p>GenomeTornadoPlot is written in R script and released via github: &amp;lt;https://github.com/chenhong-dkfz/GenomeTornadoPlot/&amp;gt;. The package is under the license of GPL-3.0.</p>", "keywords": ["570", "DNA Copy Number Variations", "ddc-570", "Genomics", "Oncogenes", "004 Data processing Computer science", "Software", "004", "570 Life sciences", "ddc-004", "3. Good health"]}, "links": [{"href": "https://archiv.ub.uni-heidelberg.de/volltextserverhttps://archiv.ub.uni-heidelberg.de/volltextserver/34483/1/btac037.pdf"}, {"href": "https://archiv.ub.uni-heidelberg.de/volltextserver/34483/1/btac037.pdf"}, {"href": "https://academic.oup.com/bioinformatics/article-pdf/38/7/2036/49009547/btac037.pdf"}, {"href": "https://doi.org/PMC8963283"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioinformatics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC8963283", "name": "item", "description": "PMC8963283", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC8963283"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-31T00:00:00Z"}}, {"id": "a45418f134a1c5fe703a883421d78a84", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:25:32Z", "type": "Report", "title": "Computational analysis of chromatin accessibility during early human induced regulatory T cell development", "keywords": ["immunology", "epigenetics", "617", "bioinformatics", "Master's Programme in Biomedical Technology", "004"], "contacts": [{"organization": "H\u00e4m\u00e4l\u00e4inen, Emmi", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/a45418f134a1c5fe703a883421d78a84"}, {"rel": "self", "type": "application/geo+json", "title": "a45418f134a1c5fe703a883421d78a84", "name": "item", "description": "a45418f134a1c5fe703a883421d78a84", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/a45418f134a1c5fe703a883421d78a84"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-01T00:00:00Z"}}, {"id": "b1a4ed17-125d-5e47-bec3-713ded48b52d", "type": "Feature", "geometry": null, "properties": {"updated": "2023-08-17T00:00:00Z", "type": "Dataset", "language": "nl", "title": "Overviews of Integrated Environmental Reports (IMJV) of operations subject to annual reporting in 2004", "description": "This layer contains an overview of all operations for which an Integrated Environmental Annual Report (IMJV) was submitted in 2004. For each operation there is a URI of Linked Open Data (LOD) sheet with an overview of the components and their download links of the IMJV annual report of the year 2004. The Integrated Environmental Annual Report (IMJV) is an annual report prepared by companies and institutions in Flanders to provide information on their environmental performance and measures. The IMJV aims to provide an overview of the impact of companies on the environment and how they deal with it. The IMJV shall include, inter alia, the following items: - A description of the company's activities; - An overview of emissions to air, water and soil; - The use of energy and raw materials; - Measures taken by the company to protect the environment; - The result of any environmental measures taken by the company; and - A description of the treatment of waste. The IMJV is submitted to the Flemish government and is an important tool to monitor and compare the environmental performance of companies. Based on the IMJV, the government can develop policies and encourage companies to improve their environmental performance.", "formats": [{"name": "GML"}], "keywords": ["afvalstoffen", "be", "bodem", "emissies", "energie", "grondstoffen", "imjv", "lucht", "mercatornet", "milieu", "milieumaatregelen", "milieuprestaties", "openbaremetadata", "overzichten-van-integraal-milieujaarverslagen-(imjv)-van-jaarverslagplichtige-exploitaties-2004", "pf_imjv_exploitaties_2004", "water"], "contacts": [{"organization": "MercatorNet", "roles": ["creator"]}, {"organization": "https://org.belgif.be/id/CbeEstablishmentUnit/2199336923", "roles": ["publisher"]}]}, "links": [{"href": "https://metadata.vlaanderen.be/srv/dut/catalog.search#/metadata/0fe53c38-0b7a-5e64-87e6-c0dae3c14e59"}, {"href": "https://www.vlaanderen.be/DataCatalogRecord/0fe53c38-0b7a-5e64-87e6-c0dae3c14e59"}, {"href": "http://data.europa.eu/88u/dataset/b1a4ed17-125d-5e47-bec3-713ded48b52d~~4"}, {"rel": "self", "type": "application/geo+json", "title": "b1a4ed17-125d-5e47-bec3-713ded48b52d", "name": "item", "description": "b1a4ed17-125d-5e47-bec3-713ded48b52d", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/b1a4ed17-125d-5e47-bec3-713ded48b52d"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"null": "date"}}, {"id": "ftpurdueuniv:oai:docs.lib.purdue.edu:dissertations-18434", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:26:46Z", "type": "Report", "title": "Detection of communication over DNSSEC covert channels", "description": "Unauthorized data removal and modification from information systems represents a major and formidable threat in modern computing. Security researchers are engaged in a constant and escalating battle with the writers of malware and other methods of network intrusion to detect and mitigate this threat. Advanced malware behaviors include encryption of communications between the server and infected client machines as well as various strategies for resilience and obfuscation of infrastructure. These techniques evolve to use any and all available mechanisms. As the Internet has grown, DNS has been expanded and has been given security updates. This study analyzed the potential uses of DNSSEC as a covert channel by malware writers and operators. The study found that changing information regarding the Start of Authority (SOA) and resigning the zone can create a covert channel. The study provided a proof of concept for this previously undocumented covert channel that uses DNSSEC.", "keywords": ["000", "DNSSEC", "Computer Sciences", "Information Technology|Computer science", "Data breach", "Applied sciences", "Covert channel", "Information Technology", "004"], "contacts": [{"organization": "Hands, Nicole M", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/ftpurdueuniv:oai:docs.lib.purdue.edu:dissertations-18434"}, {"rel": "self", "type": "application/geo+json", "title": "ftpurdueuniv:oai:docs.lib.purdue.edu:dissertations-18434", "name": "item", "description": "ftpurdueuniv:oai:docs.lib.purdue.edu:dissertations-18434", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/ftpurdueuniv:oai:docs.lib.purdue.edu:dissertations-18434"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-08-01T00:00:00Z"}}, {"id": "ftunivmaynooth:oai:mural.maynoothuniversity.ie:5849", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:26:47Z", "type": "Report", "title": "MVP OSM: a tool to identify areas of high quality contributor activity in OpenStreetMap", "description": "OpenStreetMap\u2019s success continues to grow and contributions are not limited to the collection of spatial data using GPS (Global Positioning System) equipment. A very wide range of software tools developed by, and available to, the OSM community means that at present, anyone can also make a contribution through, for example, tracing aerial imagery, directly importing data, or by adding spatial information retrieved from smartphones. Consequently \u2018the map\u2019 has become increasingly rich, but the quality of the data is very often questioned and comes under scrutiny from the GIS and LBS (Location-Based Services) communities. By examining the world map generated from OpenStreetMap, it is relatively easy to identify areas which are more or less well supported in community mapping activities; a very high level of spatial detail in certain areas can indicate the quality of OSM data. MVP OSM is a software tool designed to highlight areas in OpensStreetMap where users (contributors) are dedicated to providing high levels of spatial detail. This usually correlates with the use of a GPS and on-the-ground mapping, or, at the very least, a deep local knowledge of the area and an inherent desire to see it represented in the highest level of detail on OpenStreetMap. The input to MVP OSM is an OSM XML file, which is converted by Python into a file for spatialite (the GIS extension for sqlite). Within spatialite the data is processed to create clusters and using these spatial clusters, the tool can then derive the activity of single or multiple users in that area. Vector layers and heatmaps are generated as output that can be overlaid onto OSM maps. A high level of detail can be considered a good indicator of the quality of OSM data within a given area. The MVP OSM tool hides the details of OSM XML processing, which many researchers find difficult, and processes the data to produce very useful visualizations of contributor activity in any given OSM area.", "keywords": ["550", "Computer Science", "004"], "contacts": [{"organization": "Napolitano, Maurizio, Mooney, Peter,", "roles": ["creator"]}]}, "links": [{"href": "https://mural.maynoothuniversity.ie/id/eprint/5849/1/PM-MVP-OSM.pdf"}, {"href": "https://doi.org/ftunivmaynooth:oai:mural.maynoothuniversity.ie:5849"}, {"rel": "self", "type": "application/geo+json", "title": "ftunivmaynooth:oai:mural.maynoothuniversity.ie:5849", "name": "item", "description": "ftunivmaynooth:oai:mural.maynoothuniversity.ie:5849", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/ftunivmaynooth:oai:mural.maynoothuniversity.ie:5849"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-01-01T00:00:00Z"}}, {"id": "oai:HAL:cea-04094208v1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-10-06T16:28:32Z", "type": "Report", "title": "Accelerating exp-log based finite field multiplication", "description": "Open AccessInternational audience", "keywords": ["[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]", "[INFO.INFO-ES]Computer Science [cs]/Embedded Systems", "004", "620", "[INFO.INFO-ES] Computer Science [cs]/Embedded Systems", "[INFO.INFO-CR] Computer Science [cs]/Cryptography and Security [cs.CR]"], "contacts": [{"organization": "Belleville, Nicolas", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/oai:HAL:cea-04094208v1"}, {"rel": "self", "type": "application/geo+json", "title": "oai:HAL:cea-04094208v1", "name": "item", "description": "oai:HAL:cea-04094208v1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/oai:HAL:cea-04094208v1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=004&offset=50&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=004&offset=50&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "prev", "title": "items (prev)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=004&offset=0", "hreflang": "en-US"}, {"rel": "last", "type": "application/geo+json", "title": "items (last)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=004&offset=66", "hreflang": "en-US"}], "numberMatched": 66, "numberReturned": 16, "distributedFeatures": [], "timeStamp": "2026-10-25T18:55:17.088341Z"}