{"type": "FeatureCollection", "features": [{"id": "10.1111/1365-2745.12593", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:47Z", "type": "Journal Article", "created": "2016-04-22", "title": "Drought History Affects Grassland Plant And Microbial Carbon Turnover During And After A Subsequent Drought Event", "description": "Summary<p>   <p>Drought periods are projected to become more severe and more frequent in many European regions. While effects of single strong droughts on plant and microbial carbon (C) dynamics have been studied in some detail, impacts of recurrent drought events are still little understood.</p>  <p>We tested whether the legacy of extreme experimental drought affects responses of plant and microbial C and nitrogen (N) turnover to further drought and rewetting. In a mountain grassland, we conducted a 13C pulse\uffe2\uff80\uff90chase experiment during a naturally occurring drought and rewetting event in plots previously exposed to experimental droughts and in ambient controls (AC). After labelling, we traced 13C below\uffe2\uff80\uff90ground allocation and incorporation into soil microbes using phospholipid fatty acid biomarkers.</p>  <p>Drought history (DH) had no effects on the standing shoot and fine root plant biomass. However, plants with experimental DH displayed decreased shoot N concentrations and increased fine root N concentrations relative to those in AC. During the natural drought, plants with DH assimilated and allocated less 13C below\uffe2\uff80\uff90ground; moreover, fine root respiration was reduced and not fuelled by fresh C compared to plants in AC.</p>  <p>Regardless of DH, microbial biomass remained stable during natural drought and rewetting. Although microbial communities initially differed in their composition between soils with and without DH, they responded to the natural drought and rewetting in a similar way: gram\uffe2\uff80\uff90positive bacteria increased, while fungal and gram\uffe2\uff80\uff90negative bacteria remained stable. In soils with DH, a strongly reduced uptake of recent plant\uffe2\uff80\uff90derived 13C in microbial biomarkers was observed during the natural drought, pointing to a smaller fraction of active microbes or to a microbial community that is less dependent on plant C.</p>  <p>Synthesis. Drought history can induce changes in above\uffe2\uff80\uff90 vs. below\uffe2\uff80\uff90ground plant N concentrations and affect the response of plant C turnover to further droughts and rewetting by decreasing plant C uptake and below\uffe2\uff80\uff90ground allocation. DH does not affect the responses of the microbial community to further droughts and rewetting, but alters microbial functioning, particularly the turnover of recent plant\uffe2\uff80\uff90derived carbon, during and after further drought periods.</p>  </p>", "keywords": ["0301 basic medicine", "plant-soil (below-ground) interactions", "NITROGEN TURNOVER", "Biomass Allocation", "microbial community composition", "Negibacteria", "drought", "phospholipid fatty acid", "nitrogen", "Microbial community composition", "Plant\u2013Soil (Below\u2010ground) Interactions", "Recovery", "ROOT RESPIRATION", "Plant-soil (below-ground) interactions", "CLIMATE EXTREMES", "C pulse labelling", "Below-ground carbon allocation", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "SOIL INTERACTIONS", "below-ground carbon allocation", "C-13 pulse labelling", "Grassland", "6. Clean water", "Europe", "Phospholipid", "ORGANIC-MATTER", "Mountain Region", "Posibacteria", "DIOXIDE PULSES", "Phospholipid fatty acid", "106022 Microbiology", "Root/shoot Ratio", "Belowground Biomass", "Ecosystem Resilience", "Nitrogen", "Microbial Community", "Carbon Isotope", "Soil-vegetation Interaction", "recovery", "SUMMER DROUGHT", "03 medical and health sciences", "Rewetting", "Community Composition", "plant\u2013soil (below-ground) interactions", "WATER-STRESS", "resilience", "Drought", "Resilience", "RESILIENCE", "15. Life on land", "Turnover", "Microbial Activity", "13. Climate action", "Fatty Acid", "RESPONSES"]}, "links": [{"href": "https://doi.org/10.1111/1365-2745.12593"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2745.12593", "name": "item", "description": "10.1111/1365-2745.12593", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2745.12593"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-05-24T00:00:00Z"}}, {"id": "10.1111/1365-2745.13660", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2021-04-01", "title": "Experimental evidence of strong relationships between soil microbial communities and plant germination", "description": "Abstract<p>   <p>Plant\uffe2\uff80\uff90associated microbes play essential roles in nutrient uptake and plant productivity, but their role in driving plant germination, a critical stage in the plant life cycle, is still poorly understood.</p>  <p>We used data from a large\uffe2\uff80\uff90scale, field\uffe2\uff80\uff90based soil seed bank study to examine the relationship among plants germinating from the seed bank and soil microbial community composition. We combined this with an experiment using 34 laboratory\uffe2\uff80\uff90based microcosms whereby sterile soil was inoculated with microbes from different field sites to examine how microbes affect the germination of nine plant species.</p>  <p>The community composition of plants in the soil seed bank was highly and significantly associated with bacterial and fungal community composition, with stronger correlations for soil beneath plant canopies. Microbes predicted a unique portion of the variation in the community composition of germinants after accounting for differences in environmental variables. The strongest correlations among microbes and plant functional traits included those related to perenniality, growth form, plant size, root type and seed shape. Our microcosm study showed that different plant species had their own associated germination microbiome, and most plant\uffe2\uff80\uff93microbe interactions were positive during germination.</p>  <p>Synthesis. Our study provides evidence for intimate relationships between plant and soil biodiversity during germination. Our work fills an important knowledge gap for plant\uffe2\uff80\uff93microbe interactions and reveals valuable insights into the shared natural history of plants and microbes in terrestrial ecosystems.</p>  </p", "keywords": ["Plant germination", "2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Bacteria", "Soil seed bank", "Fungi", "Ecolog\u00eda", "15. Life on land", "Microbes", "03 medical and health sciences", "Plant-microbial association", "XXXXXX - Unknown", "Germinants"]}, "links": [{"href": "https://doi.org/10.1111/1365-2745.13660"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2745.13660", "name": "item", "description": "10.1111/1365-2745.13660", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2745.13660"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-04-17T00:00:00Z"}}, {"id": "10.1111/1462-2920.13098", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2015-10-21", "title": "Significant Alteration Of Soil Bacterial Communities And Organic Carbon Decomposition By Different Long-Term Fertilization Management Conditions Of Extremely Low-Productivity Arable Soil In South China", "description": "Summary<p>Different fertilization managements of red soil, a kind of Ferralic Cambisol, strongly affected the soil properties and associated microbial communities. The association of the soil microbial community and functionality with long\uffe2\uff80\uff90term fertilization management in the unique low\uffe2\uff80\uff90productivity red soil ecosystem is important for both soil microbial ecology and agricultural production. Here, 454 pyrosequencing analysis of 16S recombinant ribonucleic acid genes andGeoChip4\uffe2\uff80\uff90NimbleGen\uffe2\uff80\uff90based functional gene analysis were used to study the soil bacterial community composition and functional genes involved in soil organic carbon degradation. Long\uffe2\uff80\uff90term nitrogen\uffe2\uff80\uff90containing chemical fertilization\uffe2\uff80\uff90induced soil acidification and fertility decline and significantly altered the soil bacterial community, whereas long\uffe2\uff80\uff90term organic fertilization and fallow management improved the soil quality and maintained the bacterial diversity. Short\uffe2\uff80\uff90term quicklime remediation of the acidified soils did not change the bacterial communities. Organic fertilization and fallow management supported eutrophic ecosystems, in which copiotrophic taxa increased in relative abundance and have a higher intensity of labile\uffe2\uff80\uff90C\uffe2\uff80\uff90degrading genes. However, long\uffe2\uff80\uff90term nitrogen\uffe2\uff80\uff90containing chemical fertilization treatments supported oligotrophic ecosystems, in which oligotrophic taxa increased in relative abundance and have a higher intensity of recalcitrant\uffe2\uff80\uff90C\uffe2\uff80\uff90degrading genes but a lower intensity of labile\uffe2\uff80\uff90C\uffe2\uff80\uff90degrading genes. Quicklime application increased the relative abundance of copiotrophic taxa and crop production, although these effects were utterly inadequate. This study provides insights into the interaction of soil bacterial communities, soil functionality and long\uffe2\uff80\uff90term fertilization management in the red soil ecosystem; these insights are important for improving the fertility of unique low\uffe2\uff80\uff90productivity red soil.</p>", "keywords": ["0301 basic medicine", "2. Zero hunger", "China", "0303 health sciences", "Bacteria", "Nitrogen", "Agriculture", "Biodiversity", "15. Life on land", "6. Clean water", "Carbon", "Soil", "03 medical and health sciences", "13. Climate action", "Fertilizers", "Ecosystem", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1111/1462-2920.13098"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.13098", "name": "item", "description": "10.1111/1462-2920.13098", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.13098"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-12-21T00:00:00Z"}}, {"id": "10.1111/1462-2920.13842", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2017-06-27", "title": "Identification and characterisation of isoprene-degrading bacteria in an estuarine environment", "description": "Summary<p>Approximately one\uffe2\uff80\uff90third of volatile organic compounds (VOCs) emitted to the atmosphere consists of isoprene, originating from the terrestrial and marine biosphere, with a profound effect on atmospheric chemistry. However, isoprene provides an abundant and largely unexplored source of carbon and energy for microbes. The potential for isoprene degradation in marine and estuarine samples from the Colne Estuary, UK, was investigated using DNA\uffe2\uff80\uff90Stable Isotope Probing (DNA\uffe2\uff80\uff90SIP). Analysis at two timepoints showed the development of communities dominated by Actinobacteria including members of the genera Mycobacterium, Rhodococcus, Microbacterium and Gordonia. Representative isolates, capable of growth on isoprene as sole carbon and energy source, were obtained from marine and estuarine locations, and isoprene\uffe2\uff80\uff90degrading strains of Gordonia and Mycobacterium were characterised physiologically and their genomes were sequenced. Genes predicted to be required for isoprene metabolism, including four\uffe2\uff80\uff90component isoprene monooxygenases (IsoMO), were identified and compared with previously characterised examples. Transcriptional and activity assays of strains growing on isoprene or alternative carbon sources showed that growth on isoprene is an inducible trait requiring a specific IsoMO. This study is the first to identify active isoprene degraders in estuarine and marine environments using DNA\uffe2\uff80\uff90SIP and to characterise marine isoprene\uffe2\uff80\uff90degrading bacteria at the physiological and molecular level.</p>", "keywords": ["0301 basic medicine", "570", "Volatile Organic Compounds", "0303 health sciences", "550", "Base Sequence", "610", "QR Microbiology", "Sequence Analysis", " DNA", "Environment", "6. Clean water", "Mixed Function Oxygenases", "Mycobacterium", "03 medical and health sciences", "Hemiterpenes", "13. Climate action", "Pentanes", "Butadienes", "Rhodococcus", "14. Life underwater", "Gordonia Bacterium", "Research Articles", "Genome", " Bacterial", "GE Environmental Sciences"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/63998/4/Published_manuscript.pdf"}, {"href": "http://onlinelibrary.wiley.com/wol1/doi/10.1111/1462-2920.13842/fullpdf"}, {"href": "https://doi.org/10.1111/1462-2920.13842"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.13842", "name": "item", "description": "10.1111/1462-2920.13842", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.13842"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-07-21T00:00:00Z"}}, {"id": "10.1111/1462-2920.16268", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2022-11-03", "title": "Environmental micro\u2010niche filtering shapes bacterial pioneer communities during primary colonization of a Himalayas' glacier forefield", "description": "Abstract<p>The pedogenesis from the mineral substrate released upon glacier melting has been explained with the succession of consortia of pioneer microorganisms, whose structure and functionality are determined by the environmental conditions developing in the moraine. However, the microbiome variability that can be expected in the environmentally heterogeneous niches occurring in a moraine at a given successional stage is poorly investigated. In a 50\uffe2\uff80\uff89m2 area in the forefield of the Lobuche glacier (Himalayas, 5050\uffe2\uff80\uff89m above sea level), we studied six sites of primary colonization presenting different topographical features (orientation, elevation and slope) and harbouring greyish/dark biological soil crusts (BSCs). The spatial vicinity of the sites opposed to their topographical differences, allowed us to examine the effect of environmental conditions independently from the time of deglaciation. The bacterial microbiome diversity and their co\uffe2\uff80\uff90occurrence network, the bacterial metabolisms predicted from 16S rRNA gene high\uffe2\uff80\uff90throughput sequencing, and the microbiome intact polar lipids were investigated in the BSCs and the underlying sediment deep layers (DLs). Different bacterial microbiomes inhabited the BSCs and the DLs, and their composition varied among sites, indicating a niche\uffe2\uff80\uff90specific role of the micro\uffe2\uff80\uff90environmental conditions in the bacterial communities' assembly. In the heterogeneous sediments of glacier moraines, physico\uffe2\uff80\uff90chemical and micro\uffe2\uff80\uff90climatic variations at the site\uffe2\uff80\uff90spatial scale are crucial in shaping the microbiome microvariability and structuring the pioneer bacterial communities during pedogenesis.</p>", "keywords": ["0301 basic medicine", "Pedogenesis", "0303 health sciences", "Glacier Foreland Succession", "Bacteria", "Biological soil crust", "15. Life on land", "Primary Colonization", "Soil", "03 medical and health sciences", "13. Climate action", "RNA", " Ribosomal", " 16S", "Glacier Moraines", "Cold Deserts", "Pioneer Bacterial Communities", "Ice Cover", "Soil moisture", "Research Articles", "Soil Microbiology"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/949070/2/Rolli%20et%20al%202022%20Environmental%20micro%e2%80%90niche%20filtering%20shapes%20bacterial%20pioneer%20communities.pdf"}, {"href": "https://eprints.ncl.ac.uk/fulltext.aspx?url=302678/40A25368-9064-4886-B8E6-E7942511FA71.pdf&pub_id=302678"}, {"href": "https://doi.org/10.1111/1462-2920.16268"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.16268", "name": "item", "description": "10.1111/1462-2920.16268", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.16268"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-11-18T00:00:00Z"}}, {"id": "10.1111/1462-2920.13678", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2017-01-25", "title": "Bacterial, Fungal, And Plant Communities Exhibit No Biomass Or Compositional Response To Two Years Of Simulated Nitrogen Deposition In A Semiarid Grassland", "description": "Summary<p>Nitrogen (N) deposition affects myriad aspects of terrestrial ecosystem structure and function, and microbial communities may be particularly sensitive to anthropogenic N inputs. However, our understanding of N deposition effects on microbial communities is far from complete, especially for drylands where data are comparatively rare. To address the need for an improved understanding of dryland biological responses to N deposition, we conducted a two\uffe2\uff80\uff90year fertilization experiment in a semiarid grassland on the Colorado Plateau in the southwestern United States. We evaluated effects of varied levels of N inputs on archaeal, bacterial, fungal and chlorophyte community composition within three microhabitats: biological soil crusts (biocrusts), soil below biocrusts, and the plant rhizosphere. Surprisingly, N addition did not affect the community composition or diversity of any of these microbial groups; however, microbial community composition varied significantly among sampling microhabitats. Further, while plant richness, diversity, and cover showed no response to N addition, there were strong linkages between plant properties and microbial community structure. Overall, these findings highlight the potential for some dryland communities to have limited biotic ability to retain augmented N inputs, possibly leading to large N losses to the atmosphere and to aquatic systems.</p>", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Colorado", "Nitrogen", "Fungi", "15. Life on land", "Plants", "Archaea", "Grassland", "Soil", "03 medical and health sciences", "13. Climate action", "Rhizosphere", "Biomass", "Ecosystem", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1111/1462-2920.13678"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.13678", "name": "item", "description": "10.1111/1462-2920.13678", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.13678"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-03-13T00:00:00Z"}}, {"id": "10.1111/1462-2920.15018", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2020-04-14", "title": "Subsistence and complexity of antimicrobial resistance on a community\u2010wide level", "description": "Summary<p>There are a multitude of resistance strategies that microbes can apply to avoid inhibition by antimicrobials. One of these strategies is the enzymatic modification of the antibiotic, in a process generally termed inactivation. Furthermore, some microorganisms may not be limited to the mere inactivation of the antimicrobial compounds. They can continue by further enzymatic degradation of the compounds' carbon backbone, taking nutritional and energetic advantage of the former antibiotic. This driving force to harness an additional food source in a complex environment adds another level of complexity to the reasonably well\uffe2\uff80\uff90understood process of antibiotic resistance proliferation on a single cell level: It brings bioprotection into play at the level of microbial community. Despite the possible implications of a resistant community in a host and a lurking antibiotic failure, knowledge of degradation pathways of antibiotics and their connections is scarce. Currently, it is limited to only a few families of antibiotics (e.g. \uffce\uffb2\uffe2\uff80\uff90lactams and sulfonamides). In this article, we discuss the fluctuating nature of the relationship between antibiotic resistance and the biodegradation of antibiotics. This distinction mainly depends on the genetic background of the microbe, as general resistance genes can be recruited to function in a biodegradation pathway.</p>", "keywords": ["0301 basic medicine", "2. Zero hunger", "Opinion", "Sulfonamides", "0303 health sciences", "03 medical and health sciences", "Biodegradation", " Environmental", "Bacteria", "Drug Resistance", " Bacterial", "Humans", "beta-Lactams", "Anti-Bacterial Agents"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.15018"}, {"href": "https://doi.org/10.1111/1462-2920.15018"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.15018", "name": "item", "description": "10.1111/1462-2920.15018", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.15018"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-28T00:00:00Z"}}, {"id": "10.1111/1462-2920.15647", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2021-06-17", "title": "\u2018Cry\u2010for\u2010help\u2019 in contaminated soil: a dialogue among plants and soil microbiome to survive in hostile conditions", "description": "Summary<p>An open question in environmental ecology regards the mechanisms triggered by root chemistry to drive the assembly and functionality of a beneficial microbiome to rapidly adapt to stress conditions. This phenomenon, originally described in plant defence against pathogens and predators, is encompassed in the \uffe2\uff80\uff98cry\uffe2\uff80\uff90for\uffe2\uff80\uff90help\uffe2\uff80\uff99 hypothesis. Evidence suggests that this mechanism may be part of the adaptation strategy to ensure the holobiont fitness in polluted environments. Polychlorinated biphenyls (PCBs) were considered as model pollutants due to their toxicity, recalcitrance and poor phyto\uffe2\uff80\uff90extraction potential, which lead to a plethora of phytotoxic effects and rise environmental safety concerns. Plants have inefficient detoxification processes to catabolize PCBs, even leading to by\uffe2\uff80\uff90products with a higher toxicity. We propose that the \uffe2\uff80\uff98cry\uffe2\uff80\uff90for\uffe2\uff80\uff90help\uffe2\uff80\uff99 mechanism could drive the exudation\uffe2\uff80\uff90mediated recruitment and sustainment of the microbial services for PCBs removal, exerted by an array of anaerobic and aerobic microbial degrading populations working in a complex metabolic network. Through this synergistic interaction, the holobiont copes with the soil contamination, releasing the plant from the pollutant stress by the ecological services provided by the boosted metabolism of PCBs microbial degraders. Improving knowledge of root chemistry under PCBs stress is, therefore, advocated to design rhizoremediation strategies based on plant microbiome engineering.</p>", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Microbiota", "Minireviews", "15. Life on land", "Polychlorinated Biphenyls", "6. Clean water", "Soil", "03 medical and health sciences", "Biodegradation", " Environmental", "13. Climate action", "Soil Pollutants", "Environmental Pollution", "Soil Microbiology"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/857922/2/Rolli%20et%20al.%202021_EM.pdf"}, {"href": "https://air.unimi.it/bitstream/2434/857922/4/1462-2920.15647.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.15647"}, {"href": "https://doi.org/10.1111/1462-2920.15647"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.15647", "name": "item", "description": "10.1111/1462-2920.15647", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.15647"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-06-23T00:00:00Z"}}, {"id": "10.1111/1462-2920.16325", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2022-12-26", "title": "Peering down the sink: a review of isoprene metabolism by bacteria", "description": "Abstract<p>Isoprene (2\uffe2\uff80\uff90methyl\uffe2\uff80\uff901,3\uffe2\uff80\uff90butadiene) is emitted to the atmosphere each year in sufficient quantities to rival methane (&gt;500\uffe2\uff80\uff89Tg\uffe2\uff80\uff89C\uffe2\uff80\uff89yr\uffe2\uff88\uff921), primarily due to emission by trees and other plants. Chemical reactions of isoprene with other atmospheric compounds, such as hydroxyl radicals and inorganic nitrogen species (NOx), have implications for global warming and local air quality, respectively. For many years, it has been estimated that soil\uffe2\uff80\uff90dwelling bacteria consume a significant amount of isoprene (~20\uffe2\uff80\uff89Tg\uffe2\uff80\uff89C\uffe2\uff80\uff89yr\uffe2\uff88\uff921), but the mechanisms underlying the biological sink for isoprene have been poorly understood. Studies have indicated or confirmed the ability of diverse bacterial genera to degrade isoprene, whether by the canonical iso\uffe2\uff80\uff90type isoprene degradation pathway or through other less well\uffe2\uff80\uff90characterized mechanisms. Here, we review current knowledge of isoprene metabolism and highlight key areas for further research. In particular, examples of isoprene\uffe2\uff80\uff90degraders that do not utilize the isoprene monooxygenase have been identified in recent years. This has fascinating implications both for the mechanism of isoprene uptake by bacteria, and also for the ecology of isoprene\uffe2\uff80\uff90degraders in the environments.</p>", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Hemiterpenes", "Bacteria", "13. Climate action", "Ecological Microbiology", "Pentanes", "Butadienes", "Plants", "15. Life on land", "6. Clean water"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.16325"}, {"href": "https://doi.org/10.1111/1462-2920.16325"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.16325", "name": "item", "description": "10.1111/1462-2920.16325", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.16325"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-04T00:00:00Z"}}, {"id": "10.1111/1462-2920.13956", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2017-10-13", "title": "Type VI secretion systems in plant-associated bacteria", "description": "Summary<p>The type VI secretion system (T6SS) is a bacterial nanomachine used to inject effectors into prokaryotic or eukaryotic cells and is thus involved in both host manipulation and interbacterial competition. The T6SS is widespread among Gram\uffe2\uff80\uff90negative bacteria, mostly within the Proteobacterium Phylum. This secretion system is commonly found in commensal and pathogenic plant\uffe2\uff80\uff90associated bacteria. Phylogenetic analysis of phytobacterial T6SS clusters shows that they are distributed in the five main clades previously described (group 1\uffe2\uff80\uff935). The even distribution of the system among commensal and pathogenic phytobacteria suggests that the T6SS provides fitness and colonization advantages in planta and that the role of the T6SS is not restricted to virulence. This manuscript reviews the phylogeny and biological roles of the T6SS in plant\uffe2\uff80\uff90associated bacteria, highlighting a remarkable diversity both in terms of mechanism and function.</p>", "keywords": ["PROTEIN SECRETION", "0301 basic medicine", "570", "VIBRIO-CHOLERAE", "PATHOGENIC BACTERIA", "Microbiology", "03 medical and health sciences", "Bacterial Proteins", "Proteobacteria", "Phylogeny", "Plant Diseases", "2. Zero hunger", "0303 health sciences", "Science & Technology", "Virulence", "PSEUDOMONAS-AERUGINOSA", "Minireviews", "Plants", "Type VI Secretion Systems", "IN-SILICO ANALYSIS", "AGROBACTERIUM-TUMEFACIENS", "INTERBACTERIAL COMPETITION", "GENOMIC ANALYSIS", "EFFECTORS", "VIRULENCE", "Life Sciences & Biomedicine", "0605 Microbiology"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.13956"}, {"href": "https://doi.org/10.1111/1462-2920.13956"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.13956", "name": "item", "description": "10.1111/1462-2920.13956", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.13956"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-11-10T00:00:00Z"}}, {"id": "10.1111/1462-2920.15132", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2020-06-18", "title": "Trait\u2010based approaches reveal fungal adaptations to nutrient\u2010limiting conditions", "description": "Summary<p>The dependency of microbial activity on nutrient availability in soil is only partly understood, but highly relevant for nutrient cycling dynamics. In order to achieve more insight on microbial adaptations to nutrient limiting conditions, precise physiological knowledge is needed. Therefore, we developed an experimental system assessing traits of 16 saprobic fungal isolates in nitrogen (N) limited conditions. We tested the hypotheses that (1) fungal traits are negatively affected by N deficiency to a similar extent and (2) fungal isolates respond in a phylogenetically conserved fashion. Indeed, mycelial density, spore production and fungal activity (respiration and enzymatic activity) responded similarly to limiting conditions by an overall linear decrease. By contrast, mycelial extension and hyphal elongation peaked at lowest N supply (C:N 200), causing maximal biomass production at intermediate N contents. Optimal N supply rates differed among isolates, but only the extent of growth reduction was phylogenetically conserved. In conclusion, growth responses appeared as a switch from explorative growth in low nutrient conditions to exploitative growth in nutrient\uffe2\uff80\uff90rich patches, as also supported by responses to phosphorus and carbon limitations. This detailed trait\uffe2\uff80\uff90based pattern will not only improve fungal growth models, but also may facilitate interpretations of microbial responses observed in field studies.</p>", "keywords": ["0106 biological sciences", "0301 basic medicine", "2. Zero hunger", "Nitrogen", "Fungi", "577", "Phosphorus", "Nutrients", "Spores", " Fungal", "15. Life on land", "microbial activity", "01 natural sciences", "Carbon", "Soil", "fungal adaptations", "03 medical and health sciences", "Biomass", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::577 \u00d6kologie", "Soil Microbiology", "nutrient\u2010limiting conditions"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.15132"}, {"href": "https://doi.org/10.1111/1462-2920.15132"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.15132", "name": "item", "description": "10.1111/1462-2920.15132", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.15132"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-07-08T00:00:00Z"}}, {"id": "10.1111/1462-2920.15751", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2021-09-28", "title": "Novel Alcaligenes ammonioxydans sp. nov. from wastewater treatment sludge oxidizes ammonia to N2 with a previously unknown pathway", "description": "Summary<p>Heterotrophic nitrifiers are able to oxidize and remove ammonia from nitrogen\uffe2\uff80\uff90rich wastewaters but the genetic elements of heterotrophic ammonia oxidation are poorly understood. Here, we isolated and identified a novel heterotrophic nitrifier, Alcaligenes ammonioxydans sp. nov. strain HO\uffe2\uff80\uff901, oxidizing ammonia to hydroxylamine and ending in the production of N2 gas. Genome analysis revealed that strain HO\uffe2\uff80\uff901 encoded a complete denitrification pathway but lacks any genes coding for homologous to known ammonia monooxygenases or hydroxylamine oxidoreductases. Our results demonstrated strain HO\uffe2\uff80\uff901 denitrified nitrite (not nitrate) to N2 and N2O at anaerobic and aerobic conditions respectively. Further experiments demonstrated that inhibition of aerobic denitrification did not stop ammonia oxidation and N2 production. A gene cluster (dnfT1RT2ABCD) was cloned from strain HO\uffe2\uff80\uff901 and enabled E. coli accumulated hydroxylamine. Sub\uffe2\uff80\uff90cloning showed that genetic cluster dnfAB or dnfABC already enabled E. coli cells to produce hydroxylamine and further to 15N2 from (15NH4)2SO4. Transcriptome analysis revealed these three genes dnfA, dnfB and dnfC were significantly upregulated in response to ammonia stimulation. Taken together, we concluded that strain HO\uffe2\uff80\uff901 has a novel dnf genetic cluster for ammonia oxidation and this dnf genetic cluster encoded a previously unknown pathway of direct ammonia oxidation (Dirammox) to N2.</p>", "keywords": ["Alcaligenes ammonioxydans sp. nov.", "0301 basic medicine", "106014 Genomics", "Nitrogen", "HYDROXYLAMINE OXIDASE", "direct ammonia oxidation (Dirammox)", "OXIDATION", "REDUCTASE", "Water Purification", "THIOSPHAERA-PANTOTROPHA", "PYRUVIC-OXIME", "03 medical and health sciences", "heterotrophic nitrifier", "Ammonia", "106014 Genomik", "Escherichia coli", "Alcaligenes", "wastewater", "Nitrites", "106022 Mikrobiologie", "HETEROTROPHIC NITRIFICATION", "0303 health sciences", "PURIFICATION", "Sewage", "AEROBIC DENITRIFICATION", "Nitrification", "Aerobiosis", "6. Clean water", "NITROGEN", "FAECALIS", "Denitrification", "106022 Microbiology", "Oxidation-Reduction"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.15751"}, {"href": "https://doi.org/10.1111/1462-2920.15751"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.15751", "name": "item", "description": "10.1111/1462-2920.15751", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.15751"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-09-28T00:00:00Z"}}, {"id": "10.1111/1462-2920.15839", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2021-12-23", "title": "The Lys\u2010motif receptor                                            LYK4                                          mediates                     Enterobacter                     sp.                     SA187                     triggered salt tolerance in                     Arabidopsis thaliana", "description": "Summary                   <p>                     Root endophytes establish beneficial interactions with plants, improving holobiont resilience and fitness, but how plant immunity accommodates beneficial microbes is poorly understood. The multi\uffe2\uff80\uff90stress tolerance\uffe2\uff80\uff90inducing endophyte                     Enterobacter                     sp. SA187 triggers a canonical immune response in Arabidopsis only at high bacterial dosage (&gt;10                     8                     \uffe2\uff80\uff89CFUs\uffe2\uff80\uff89ml                     \uffe2\uff88\uff921                     ), suggesting that SA187 is able to evade or suppress the plant defence system at lower titres. Although SA187 flagellin epitopes are recognized by the                     FLS2                     receptor, SA187\uffe2\uff80\uff90triggered salt tolerance functions independently of the                     FLS2                     system. In contrast, overexpression of the chitin receptor components                     LYK4                     and                     LYK5                     compromised the beneficial effect of SA187 on Arabidopsis, while it was enhanced in                     lyk4                     mutant plants. Transcriptome analysis revealed that the role of                     LYK4                     is intertwined with a function in remodelling defence responses with growth and root developmental processes.                     LYK4                     interferes with modification of plant ethylene homeostasis by                     Enterobacter                     SA187 to boost salt stress resistance. Collectively, these results contribute to unlock the crosstalk between components of the plant immune system and beneficial microbes and point to a new role for the Lys\uffe2\uff80\uff90motif receptor                     LYK4                     in beneficial plant\uffe2\uff80\uff93microbe interaction.                   </p", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "3. Good health"]}, "links": [{"href": "https://doi.org/10.1111/1462-2920.15839"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.15839", "name": "item", "description": "10.1111/1462-2920.15839", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.15839"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-12-23T00:00:00Z"}}, {"id": "10.1111/1462-2920.16149", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2022-08-03", "title": "\u2018Omics-guided prediction of the pathway for metabolism of isoprene by Variovorax sp. WS11", "description": "Abstract<p>Bacteria that inhabit soils and the leaves of trees partially mitigate the release of the abundant volatile organic compound, isoprene (2\uffe2\uff80\uff90methyl\uffe2\uff80\uff901,3\uffe2\uff80\uff90butadiene). While the initial steps of isoprene metabolism were identified in Rhodococcus sp. AD45 two decades ago, the isoprene metabolic pathway still remains largely undefined. Limited understanding of the functions of isoG, isoJ and aldH and uncertainty in the route of isoprene\uffe2\uff80\uff90derived carbon into central metabolism have hindered our understanding of isoprene metabolism. These previously uncharacterised iso genes are essential in Variovorax sp. WS11, determined by targeted mutagenesis. Using combined \uffe2\uff80\uff98omics\uffe2\uff80\uff90based approaches, we propose the complete isoprene metabolic pathway. Isoprene is converted to propionyl\uffe2\uff80\uff90CoA, which is assimilated by the chromosomally encoded methylmalonyl\uffe2\uff80\uff90CoA pathway, requiring biotin and vitamin B12, with the plasmid\uffe2\uff80\uff90encoded methylcitrate pathway potentially providing robustness against limitations in these vitamins. Key components of this pathway were induced by both isoprene and its initial oxidation product, epoxyisoprene, the principal inducer of isoprene metabolism in both Variovorax sp. WS11 and Rhodococcus sp. AD45. Analysis of the genomes of distinct isoprene\uffe2\uff80\uff90degrading bacteria indicated that all of the genetic components of the methylcitrate and methylmalonyl\uffe2\uff80\uff90CoA pathways are not always present in isoprene degraders, although incorporation of isoprene\uffe2\uff80\uff90derived carbon via propionyl\uffe2\uff80\uff90CoA and acetyl\uffe2\uff80\uff90CoA is universally indicated.</p>", "keywords": ["Comamonadaceae", "0301 basic medicine", "570", "0303 health sciences", "03 medical and health sciences", "Hemiterpenes", "Butadienes", "Rhodococcus", "Research Articles", "Carbon"], "contacts": [{"organization": "Dawson, Robin A., Rix, Gregory D., Crombie, Andrew T., Murrell, J. Colin,", "roles": ["creator"]}]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/87123/1/Environmental_Microbiology_2022_Dawson_Omics_guided_prediction_of_the_pathway_for_metabolism_of_isoprene_by.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.16149"}, {"href": "https://doi.org/10.1111/1462-2920.16149"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.16149", "name": "item", "description": "10.1111/1462-2920.16149", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.16149"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-08-05T00:00:00Z"}}, {"id": "10.1111/1462-2920.15764", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2021-09-07", "title": "Aridity modulates belowground bacterial community dynamics in olive tree", "description": "Summary<p>Aridity negatively affects the diversity and abundance of edaphic microbial communities and their multiple ecosystem services, ultimately impacting vegetation productivity and biotic interactions. Investigation about how plant\uffe2\uff80\uff90associated microbial communities respond to increasing aridity is of particular importance, especially in light of the global climate change predictions. To assess the effect of aridity on plant associated bacterial communities, we investigated the diversity and co\uffe2\uff80\uff90occurrence of bacteria associated with the bulk soil and the root system of olive trees cultivated in orchards located in higher, middle and lower arid regions of Tunisia. The results indicated that the selective process mediated by the plant root system is amplified with the increment of aridity, defining distinct bacterial communities, dominated by aridity\uffe2\uff80\uff90winner and aridity\uffe2\uff80\uff90loser bacteria negatively and positively correlated with increasing annual rainfall, respectively. Aridity regulated also the co\uffe2\uff80\uff90occurrence interactions among bacteria by determining specific modules enriched with one of the two categories (aridity\uffe2\uff80\uff90winners or aridity\uffe2\uff80\uff90losers), which included bacteria with multiple PGP functions against aridity. Our findings provide new insights into the process of bacterial assembly and interactions with the host plant in response to aridity, contributing to understand how the increasing aridity predicted by climate changes may affect the resilience of the plant holobiont.</p", "keywords": ["Special Issue Articles", "0301 basic medicine", "2. Zero hunger", "Soil", "0303 health sciences", "03 medical and health sciences", "Bacteria", "13. Climate action", "Olea", "Desert Climate", "15. Life on land", "Ecosystem", "Soil Microbiology"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/878610/2/Marasco%20et%20al%202021%20publication.pdf"}, {"href": "https://doi.org/10.1111/1462-2920.15764"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.15764", "name": "item", "description": "10.1111/1462-2920.15764", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.15764"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-09-24T00:00:00Z"}}, {"id": "10.1111/1462-2920.16316", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2023-01-04", "title": "The effect of methane and methanol on the terrestrial ammonia\u2010oxidizing archaeon \u2018Candidatus Nitrosocosmicus franklandus C13\u2019", "description": "Abstract<p>The ammonia monooxygenase (AMO) is a key enzyme in ammonia\uffe2\uff80\uff90oxidizing archaea, which are abundant and ubiquitous in soil environments. The AMO belongs to the copper\uffe2\uff80\uff90containing membrane monooxygenase (CuMMO) enzyme superfamily, which also contains particulate methane monooxygenase (pMMO). Enzymes in the CuMMO superfamily are promiscuous, which results in co\uffe2\uff80\uff90oxidation of alternative substrates. The phylogenetic and structural similarity between the pMMO and the archaeal AMO is well\uffe2\uff80\uff90established, but there is surprisingly little information on the influence of methane and methanol on the archaeal AMO and terrestrial nitrification. The aim of this study was to examine the effects of methane and methanol on the soil ammonia\uffe2\uff80\uff90oxidizing archaeon \uffe2\uff80\uff98Candidatus Nitrosocosmicus franklandus C13\uffe2\uff80\uff99. We demonstrate that both methane and methanol are competitive inhibitors of the archaeal AMO. The inhibition constants (Ki) for methane and methanol were 2.2 and 20\uffe2\uff80\uff89\uffce\uffbcM, respectively, concentrations which are environmentally relevant and orders of magnitude lower than those previously reported for ammonia\uffe2\uff80\uff90oxidizing bacteria. Furthermore, we demonstrate that a specific suite of proteins is upregulated and downregulated in \uffe2\uff80\uff98Ca. Nitrosocosmicus franklandus C13\uffe2\uff80\uff99 in the presence of methane or methanol, which provides a foundation for future studies into metabolism of one\uffe2\uff80\uff90carbon (C1) compounds in ammonia\uffe2\uff80\uff90oxidizing archaea.</p", "keywords": ["0301 basic medicine", "570", "Soil", "0303 health sciences", "03 medical and health sciences", "Ammonia", "Methanol", "Archaea", "Methane", "Oxidation-Reduction", "Phylogeny"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/97837/1/Oudova_Rivera_etal_2023_EnvironmentalMicrobiology.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.16316"}, {"href": "https://doi.org/10.1111/1462-2920.16316"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.16316", "name": "item", "description": "10.1111/1462-2920.16316", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.16316"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-17T00:00:00Z"}}, {"id": "10.1111/1462-2920.16331", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2022-12-29", "title": "How do soil microbes shape ecosystem biogeochemistry in the context of global change?", "keywords": ["0301 basic medicine", "2. Zero hunger", "Evolutionary Biology", "0303 health sciences", "03 medical and health sciences", "Soil", "Nitrogen", "13. Climate action", "15. Life on land", "Microbiology", "Ecosystem", "Soil Microbiology"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.16331"}, {"href": "https://escholarship.org/content/qt5pm8g6zp/qt5pm8g6zp.pdf"}, {"href": "https://escholarship.org/content/qt5f4861ff/qt5f4861ff.pdf"}, {"href": "https://doi.org/10.1111/1462-2920.16331"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.16331", "name": "item", "description": "10.1111/1462-2920.16331", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.16331"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-14T00:00:00Z"}}, {"id": "10.1111/1574-6941.12009", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2012-09-13", "title": "Chronic N-Amended Soils Exhibit An Altered Bacterial Community Structure In Harvard Forest, Ma, Usa", "description": "At the Harvard Forest, Petersham, MA, the impact of 20 years of annual ammonium nitrate application to the mixed hardwood stand on soil bacterial communities was studied using 16S rRNA genes pyrosequencing. Amplification of 16S rRNA genes was done using DNA extracted from 30 soil samples (three treatments \u00d7 two horizons \u00d7 five subplots) collected from untreated (control), low N-amended (50 kg ha(-1) year(-1)) and high N-amended (150 kg ha(-1) year(-1)) plots. A total of 1.3 million sequences were processed using qiime. Although Acidobacteria represented the most abundant phylum based on the number of sequences, Proteobacteria were the most diverse in terms of operational taxonomic units (OTUs). UniFrac analyses revealed that the bacterial communities differed significantly among soil horizons and treatments. Microsite variability among the five subplots was also evident. Nonmetric multidimensional scaling ordination of normalized OTU data followed by permutational manova further confirmed these observations. Richness indicators and indicator species analyses revealed higher bacterial diversity associated with N amendment. Differences in bacterial diversity and community composition associated with the N treatments were also observed at lower phylogenetic levels. Only 28-35% of the 6 936 total OTUs identified were common to three treatments, while the rest were specific to one treatment or common to two.", "keywords": ["DNA", " Bacterial", "0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Environmental Microbiology and Microbial Ecology", "Nitrates", "Bacteria", "Genes", " rRNA", "Biodiversity", "15. Life on land", "Trees", "Scientific Contribution Number 2470", "Soil", "03 medical and health sciences", "Massachusetts", "RNA", " Ribosomal", " 16S", "Fertilizers", "Phylogeny", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1111/1574-6941.12009"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/FEMS%20Microbiology%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1574-6941.12009", "name": "item", "description": "10.1111/1574-6941.12009", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1574-6941.12009"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-10-11T00:00:00Z"}}, {"id": "10.1111/1541-4337.12727", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2021-03-05", "title": "Antimicrobial nanoparticles and biodegradable polymer composites for active food packaging applications", "description": "Abstract<p>The food industry faces numerous challenges to assure provision of tasty and convenient food that possesses extended shelf life and shows long\uffe2\uff80\uff90term high\uffe2\uff80\uff90quality preservation. Research and development of antimicrobial materials for food applications have provided active antibacterial packaging technologies that are able to meet these challenges. Furthermore, consumers expect and demand sustainable packaging materials that would reduce environmental problems associated with plastic waste. In this review, we discuss antimicrobial composite materials for active food packaging applications that combine highly efficient antibacterial nanoparticles (i.e., metal, metal oxide, mesoporous silica and graphene\uffe2\uff80\uff90based nanomaterials) with biodegradable and environmentally friendly green polymers (i.e., gelatin, alginate, cellulose, and chitosan) obtained from plants, bacteria, and animals. In addition, innovative syntheses and processing techniques used to obtain active and safe packaging are showcased. Implementation of such green active packaging can significantly reduce the risk of foodborne pathogen outbreaks, improve food safety and quality, and minimize product losses, while reducing waste and maintaining sustainability.</p", "keywords": ["0301 basic medicine", "Polymers", "PFAS", "polyvinil alcohol", "EFSA", "MRSA", "02 engineering and technology", "multiwalled carbon nanotubes NP", "European Food Safety Agency", "perfluoroalkyl substances PGA", "food industry", " food safety", " agriculture", "cinnamon essential oil CNT", "reduced graphene oxide ROS", "biodegradable natural polymers", "Anti-Infective Agents", "polybutylene succinate", "biodegradable natural polymers CEO", "ultraviolet", "poly(glycolic acid) PHB", "generally recognized as safe MSN", "methicillin-resistant Staphylococcus aureus MWCNTs", "PBS", "perfluoroalkyl substances", "CEO", "reactive oxygen species", "2. Zero hunger", "generally recognized as safe", "PHBV", "cinnamon essential oil", "PGA", "Food and Drug Administration", "poly(3-hydroxybutyrate-co-3-hydroxyvalerate)", "Food Packaging", "PLGA", "600", "ROS", "European Food Safety Agency FDA", "Anti-Bacterial Agents", "mesoporous silica nanoparticles MRSA", "[SDV] Life Sciences [q-bio]", "food safety", "GO", "PCL", "nanoparticles PBS", "graphene oxide", "PLA", "shelf life", "poly(lactic acid)", "Food and Drug Administration GO", "0210 nano-technology", "FDA", "poly(\u03b5-caprolactone) PFAS", "nanofillers", "polybutylene succinate PCL", "CNT", "PHB", "graphene oxide GRAS", "multiwalled carbon nanotubes", "methicillin-resistant Staphylococcus aureus", "poly(hydroxybutyrate)", "reduced graphene oxide", "NP", "12. Responsible consumption", "03 medical and health sciences", "poly(hydroxybutyrate) PHBV", "rGO", "GRAS", "nanocomposites", "Animals", "poly(lactide-co-glycolide)", "carbon nanotube", "MSN", "MWCNTs", "mesoporous silica nanoparticles", "foodborne pathogens", "poly(3-hydroxybutyrate-co-3-hydroxyvalerate) PLA", "carbon nanotube EFSA", "664", "polyvinil alcohol rGO", "UV", "poly(lactic acid) PLGA", "reactive oxygen species UV", "food industry", "  food safety", " agriculture", "poly(glycolic acid)", "shelf life BNP", "13. Climate action", "PVA", "Nanoparticles", "nanoparticles", "poly(lactide-co-glycolide) PVA", "poly(\u03b5-caprolactone)"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1541-4337.12727"}, {"href": "https://doi.org/10.1111/1541-4337.12727"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Comprehensive%20Reviews%20in%20Food%20Science%20and%20Food%20Safety", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1541-4337.12727", "name": "item", "description": "10.1111/1541-4337.12727", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1541-4337.12727"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-04T00:00:00Z"}}, {"id": "10.1111/1574-6941.12018", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2012-09-26", "title": "Acidobacterial Community Responses To Agricultural Management Of Soybean In Amazon Forest Soils", "description": "This study focused on the impact of land-use changes and agricultural management of soybean in Amazon forest soils on the abundance and composition of the acidobacterial community. Quantitative real-time PCR (q-PCR) assays and pyrosequencing of 16S rRNA gene were applied to study the acidobacterial community in bulk soil samples from soybean croplands and adjacent native forests, and mesocosm soil samples from soybean rhizosphere. Based on qPCR measurements, Acidobacteria accounted for 23% in forest soils, 18% in cropland soils, and 14% in soybean rhizosphere of the total bacterial signals. From the 16S rRNA gene sequences of Bacteria domain, the phylum Acidobacteria represented 28% of the sequences from forest soils, 16% from cropland soils, and 17% from soybean rhizosphere. Acidobacteria subgroups 1-8, 10, 11, 13, 17, 18, 22, and 25 were detected with subgroup 1 as dominant among them. Subgroups 4, 6, and 7 were significantly higher in cropland soils than in forest soils, which subgroups responded to decrease in soil aluminum. Subgroups 6 and 7 responded to high content of soil Ca, Mg, Mn, and B. These results showed a differential response of the Acidobacteria subgroups to abiotic soil factors, and open the possibilities to explore acidobacterial subgroups as early-warning bioindicators of agricultural soil management effects in the Amazon area.", "keywords": ["DNA", " Bacterial", "0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Glycine max", "Agriculture", "Sequence Analysis", " DNA", "15. Life on land", "Acidobacteria", "Trees", "Soil", "03 medical and health sciences", "international", "RNA", " Ribosomal", " 16S", "Rhizosphere", "Brazil", "Phylogeny", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1111/1574-6941.12018"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/FEMS%20Microbiology%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1574-6941.12018", "name": "item", "description": "10.1111/1574-6941.12018", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1574-6941.12018"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-10-19T00:00:00Z"}}, {"id": "10.1111/1574-6941.12197", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2013-08-31", "title": "Bacterial Community In Alpine Grasslands Along An Altitudinal Gradient On The Tibetan Plateau", "description": "The Tibetan Plateau, 'the third pole', is a region that is very sensitive to climate change. A better understanding of response of soil microorganisms to climate warming is important to predict soil organic matter preservation in future scenario. We selected a typically altitudinal gradient (4400 m-5200 m a.s.l) along south-facing slope of Nyainqentanglha Mountains on central Tibetan Plateau. Bacterial communities were investigated using terminal restriction fragment length polymorphism analysis (T-RFLP) combined with sequencing methods. Acidobacteria and Proteobacteria were dominant bacteria in this alpine soil. Redundancy analysis revealed that soil bacterial communities were significantly different along the large altitudinal gradient, although the dominant environmental driving factors varied at different soil depth. Specifically, our results showed that precipitation and soil NH4 + were dominant environmental factors that influence bacterial communities at 0-5 cm depth along the altitudinal gradients, whereas pH was a major influential factor at 5-20 cm soil. In this semi-arid region, precipitation rather than temperature was a main driving force on soil bacterial communities as well as on plant communities. We speculate that an increase in temperature might not significantly change soil bacterial community structures along the large altitudinal gradient, whereas precipitation change would play a more important role in affecting soil bacterial communities.", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Bacteria", "Altitude", "Climate", "Molecular Sequence Data", "Temperature", "15. Life on land", "Poaceae", "Tibet", "Soil", "03 medical and health sciences", "13. Climate action", "11. Sustainability", "Ecosystem", "Phylogeny", "Soil Microbiology"], "contacts": [{"organization": "Tianxiang Luo, Yanli Yuan, Gengxin Zhang, Jian Wang, Guicai Si,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1111/1574-6941.12197"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/FEMS%20Microbiology%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1574-6941.12197", "name": "item", "description": "10.1111/1574-6941.12197", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1574-6941.12197"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-09-30T00:00:00Z"}}, {"id": "10.1111/1751-7915.13372", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2019-02-01", "title": "Breaking the state-of-the-art in the chemical industry with new-to-Nature products via synthetic microbiology", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Editorial: Synthetic Microbiology as a Source of New Enterprises and Job Creation", "Metabolic Engineering", "Synthetic Biology", "Organic Chemicals", "Biotechnology"]}, "links": [{"href": "http://onlinelibrary.wiley.com/wol1/doi/10.1111/1751-7915.13372/fullpdf"}, {"href": "https://doi.org/10.1111/1751-7915.13372"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1751-7915.13372", "name": "item", "description": "10.1111/1751-7915.13372", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1751-7915.13372"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-01-31T00:00:00Z"}}, {"id": "10.1111/1751-7915.13396", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2019-03-12", "title": "Accelerated genome engineering of Pseudomonas putida by I\u2010 Sce I\u2015mediated recombination and CRISPR \u2010Cas9 counterselection", "description": "Summary<p>Pseudomonas species have become reliable platforms for bioproduction due to their capability to tolerate harsh conditions imposed by large\uffe2\uff80\uff90scale bioprocesses and their remarkable resistance to diverse physicochemical stresses. The last few years have brought forth a variety of synthetic biology tools for the genetic manipulation of pseudomonads, but most of them are either applicable only to obtain certain types of mutations, lack efficiency, or are not easily accessible to be used in different Pseudomonas species (e.g. natural isolates). In this work, we describe a versatile, robust and user\uffe2\uff80\uff90friendly procedure that facilitates virtually any kind of genomic manipulation in Pseudomonas species in 3\uffe2\uff80\uff935\uffc2\uffa0days. The protocol presented here is based on DNA recombination forced by double\uffe2\uff80\uff90stranded DNA cuts (through the activity of the I\uffe2\uff80\uff90SceI homing meganuclease from yeast) followed by highly efficient counterselection of mutants (aided by a synthetic CRISPR\uffe2\uff80\uff90Cas9 device). The individual parts of the genome engineering toolbox, tailored for knocking genes in and out, have been standardized to enable portability and easy exchange of functional gene modules as needed. The applicability of the procedure is illustrated both by eliminating selected genomic regions in the platform strain P.\uffc2\uffa0putida KT2440 (including difficult\uffe2\uff80\uff90to\uffe2\uff80\uff90delete genes) and by integrating different reporter genes (comprising novel variants of fluorescent proteins) into a defined landing site in the target chromosome.</p>", "keywords": ["Gene Editing", "Recombination", " Genetic", "0301 basic medicine", "03 medical and health sciences", "Pseudomonas putida", "Brief Reports", "Clustered Regularly Interspaced Short Palindromic Repeats", "CRISPR-Cas Systems", "TP248.13-248.65", "Biotechnology", "3. Good health"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1751-7915.13396"}, {"href": "https://doi.org/10.1111/1751-7915.13396"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1751-7915.13396", "name": "item", "description": "10.1111/1751-7915.13396", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1751-7915.13396"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-03-12T00:00:00Z"}}, {"id": "10.1111/1751-7915.13654", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2020-08-31", "title": "An underappreciated DIET for anaerobic petroleum hydrocarbon\u2010degrading microbial communities", "description": "Direct interspecies electron transfer (DIET) via electrically conductive minerals can play a role in the anaerobic oxidation of petroleum hydrocarbons in contaminated sites and can be exploited for the development of new, more effective bioremediation approaches.", "keywords": ["0301 basic medicine", "H100", "0303 health sciences", "petroleum hydrocarbon", "anaerobic degradation", "Microbiota", "H800", "Hydrocarbons", "6. Clean water", "DIET", "03 medical and health sciences", "Biodegradation", " Environmental", "Petroleum", "Soil Pollutants", "Anaerobiosis", "Crystal Ball", "TP248.13-248.65", "Biotechnology"]}, "links": [{"href": "https://nrl.northumbria.ac.uk/id/eprint/44983/8/1751-7915.13654.pdf"}, {"href": "https://iris.cnr.it/bitstream/20.500.14243/394172/1/An%20underappreciated%20DIET%20for%20anaerobic%20petroleum.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1751-7915.13654"}, {"href": "https://eprints.ncl.ac.uk/fulltext.aspx?url=270998/E5D81B02-CB5D-4798-8D73-9D54E5057C34.pdf&pub_id=270998"}, {"href": "https://doi.org/10.1111/1751-7915.13654"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1751-7915.13654", "name": "item", "description": "10.1111/1751-7915.13654", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1751-7915.13654"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-08-30T00:00:00Z"}}, {"id": "10.1111/1758-2229.12049", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2013-03-14", "title": "Soil Phosphorus Depletion And Shifts In Plant Communities Change Bacterial Community Structure In A Long-Term Grassland Management Trial", "description": "Summary<p>Agricultural systems rely on healthy soils and their sustainability requires understanding the long\uffe2\uff80\uff90term impacts of agricultural practices on soils, including microbial communities. We examined the impact of 17 years of land management on soil bacterial communities in a New Zealand randomized\uffe2\uff80\uff90block pasture trial. Significant variation in bacterial community structure related to mowing and plant biomass removal, while nitrogen fertilizer had no effect. Changes in soil chemistry and legume abundance described 52% of the observed variation in the bacterial community structure. Legumes (Trifolium species) were absent in unmanaged plots but increased in abundance with management intensity; 11% of the variation in soil bacterial community structure was attributed to this shift in the plant community. Olsen P explained 10% of the observed heterogeneity, which is likely due to persistent biomass removal resulting in P limitation; Olsen P was significantly lower in plots with biomass removed (14\uffe2\uff80\uff89mg kg\uffe2\uff88\uff921\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff891.3SE) compared with plots that were not mown, or where biomass was left after mowing (32\uffe2\uff80\uff89mg kg\uffe2\uff88\uff921\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff891.6SE). Our results suggest that removal of plant biomass and associated phosphorus, as well as shifts in the plant community, have greater long\uffe2\uff80\uff90term impacts on soil bacterial community structure than application of nitrogen fertilizers.</p>", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Bacteria", "Nitrogen", "Microbial Consortia", "Population Dynamics", "Agriculture", "Fabaceae", "Phosphorus", "15. Life on land", "Poaceae", "Soil", "03 medical and health sciences", "Biomass", "Fertilizers", "Ecosystem", "Soil Microbiology", "New Zealand"]}, "links": [{"href": "https://doi.org/10.1111/1758-2229.12049"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1758-2229.12049", "name": "item", "description": "10.1111/1758-2229.12049", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1758-2229.12049"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-04-10T00:00:00Z"}}, {"id": "10.1111/1574-6941.12384", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2014-07-21", "title": "Impact Of Long-Term N, P, K, And Npk Fertilization On The Composition And Potential Functions Of The Bacterial Community In Grassland Soil", "description": "Soil abiotic and biotic interactions govern important ecosystem processes. However, the mechanisms behind these interactions are complex, and the links between specific environmental factors, microbial community structures, and functions are not well understood. Here, we applied DNA shotgun metagenomic techniques to investigate the effect of inorganic fertilizers N, P, K, and NPK on the bacterial community composition and potential functions in grassland soils in a 54-year experiment. Differences in total and available nutrients were found in the treatment soils; interestingly, Al, As, Mg, and Mn contents were variable in N, P, K, and NPK treatments. Bacterial community compositions shifted and Actinobacteria were overrepresented under the four fertilization treatments compared to the control. Redundancy analysis of the soil parameters and the bacterial community profiles showed that Mg, total N, Cd, and Al were linked to community variation. Using correlation analysis, Acidobacteria, Bacteroidetes, and Verrucomicrobia were linked similarly to soil parameters, and Actinobacteria and Proteobacteria were linked separately to different suites of parameters. Surprisingly, we found no fertilizers effect on microbial functional profiles which supports functional redundancy as a mechanism for stabilization of functions during changes in microbial composition. We suggest that functional profiles are more resistant to environmental changes than community compositions in the grassland ecosystem.", "keywords": ["0301 basic medicine", "sandy loam", "Nitrogen", "verrucomicrobia", "microbial communities", "nitrogen", "diversity", "Phosphates", "Soil", "03 medical and health sciences", "Fertilizers", "Soil Microbiology", "2. Zero hunger", "metagenomics", "0303 health sciences", "Bacteria", "national", "15. Life on land", "Grassland", "13. Climate action", "genome size", "ammonia-oxidizing bacteria", "Potassium", "Metagenomics", "ecosystems", "management"]}, "links": [{"href": "https://doi.org/10.1111/1574-6941.12384"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/FEMS%20Microbiology%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1574-6941.12384", "name": "item", "description": "10.1111/1574-6941.12384", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1574-6941.12384"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-08-21T00:00:00Z"}}, {"id": "10.1111/1751-7915.13383", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2019-03-13", "title": "Physical decoupling of XylS/ Pm regulatory elements and conditional proteolysis enable precise control of gene expression in Pseudomonas putida", "description": "Summary<p>Most of the gene expression systems available for Gram\uffe2\uff80\uff90negative bacteria are afflicted by relatively high levels of basal (i.e. leaky) expression of the target gene(s). This occurrence affects the system dynamics, ultimately reducing the output and productivity of engineered pathways and synthetic circuits. In order to circumvent this problem, we have designed a novel expression system based on the well\uffe2\uff80\uff90known XylS/Pm transcriptional regulator/promoter pair from the soil bacterium Pseudomonas putida mt\uffe2\uff80\uff902, in which the key functional elements are physically decoupled. By integrating the xylS gene into the chromosome of the platform strain KT2440, while placing the Pm promoter into a set of standard plasmid vectors, the inducibility of the system (i.e. the output difference between the induced and uninduced state) improved up to 170\uffe2\uff80\uff90fold. We further combined this modular system with an extra layer of post\uffe2\uff80\uff90translational control by means of conditional proteolysis. In this setup, the target gene is tagged with a synthetic motif dictating protein degradation. When the system features were characterized using the monomeric superfolder GFP as a model protein, the basal levels of fluorescence were brought down to zero (i.e. below the limit of detection). In all, these novel expression systems constitute an alternative tool to altogether suppress leaky gene expression, and they can be easily adapted to other vector formats and plugged\uffe2\uff80\uff90in into different Gram\uffe2\uff80\uff90negative bacterial species at the user's will.</p>", "keywords": ["0301 basic medicine", "0303 health sciences", "Pseudomonas putida", "Gene Expression", "Gene Expression Regulation", " Bacterial", "03 medical and health sciences", "Bacterial Proteins", "Proteolysis", "Trans-Activators", "Brief Reports", "Promoter Regions", " Genetic", "TP248.13-248.65", "Biotechnology", "Plasmids"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1751-7915.13383"}, {"href": "https://doi.org/10.1111/1751-7915.13383"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1751-7915.13383", "name": "item", "description": "10.1111/1751-7915.13383", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1751-7915.13383"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-03-12T00:00:00Z"}}, {"id": "10.1111/1751-7915.13533", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2020-02-11", "title": "An expanded CRISPRi toolbox for tunable control of gene expression in Pseudomonas putida", "description": "Summary<p>Owing to its wide metabolic versatility and physiological robustness, together with amenability to genetic manipulations and high resistance to stressful conditions, Pseudomonas putida is increasingly becoming the organism of choice for a range of applications in both industrial and environmental applications. However, a range of applied synthetic biology and metabolic engineering approaches are still limited by the lack of specific genetic tools to effectively and efficiently regulate the expression of target genes. Here, we present a single\uffe2\uff80\uff90plasmid CRISPR\uffe2\uff80\uff90interference (CRISPRi) system expressing a nuclease\uffe2\uff80\uff90deficient cas9 gene under the control of the inducible XylS/Pm expression system, along with the option of adopting constitutively expressed guide RNAs (either sgRNA or crRNA and tracrRNA). We showed that the system enables tunable, tightly controlled gene repression (up to 90%) of chromosomally expressed genes encoding fluorescent proteins, either individually or simultaneously. In addition, we demonstrate that this method allows for suppressing the expression of the essential genes pyrF and ftsZ, resulting in significantly low growth rates or morphological changes respectively. This versatile system expands the capabilities of the current CRISPRi toolbox for efficient, targeted and controllable manipulation of gene expression in P. putida.</p>", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Pseudomonas putida", "Life Science", "Gene Expression", "Clustered Regularly Interspaced Short Palindromic Repeats", "CRISPR-Cas Systems", "RNA", " Guide", " CRISPR-Cas Systems", "TP248.13-248.65", "Research Articles", "Biotechnology"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1751-7915.13533"}, {"href": "https://doi.org/10.1111/1751-7915.13533"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1751-7915.13533", "name": "item", "description": "10.1111/1751-7915.13533", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1751-7915.13533"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-02-11T00:00:00Z"}}, {"id": "10.1111/1751-7915.14404", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2024-04-08", "title": "Characterization of an extremophile bacterial acid phosphatase derived from metagenomics analysis", "description": "Abstract<p>Acid phosphatases are enzymes that play a crucial role in the hydrolysis of various organophosphorous molecules. A putative acid phosphatase called FS6 was identified using genetic profiles and sequences from different environments. FS6 showed high sequence similarity to type C acid phosphatases and retained more than 30% of consensus residues in its protein sequence. A histidine\uffe2\uff80\uff90tagged recombinant FS6 produced in Escherichia coli exhibited extremophile properties, functioning effectively in a broad pH range between 3.5 and 8.5. The enzyme demonstrated optimal activity at temperatures between 25 and 50\uffc2\uffb0C, with a melting temperature of 51.6\uffc2\uffb0C. Kinetic parameters were determined using various substrates, and the reaction catalysed by FS6 with physiological substrates was at least 100\uffe2\uff80\uff90fold more efficient than with p\uffe2\uff80\uff90nitrophenyl phosphate. Furthermore, FS6 was found to be a decamer in solution, unlike the dimeric forms of crystallized proteins in its family.</p", "keywords": ["0301 basic medicine", "Extremophiles", "0303 health sciences", "03 medical and health sciences", "Hydrolysis", "Acid Phosphatase", "Amino Acid Sequence", "Hydrogen-Ion Concentration", "TP248.13-248.65", "Research Articles", "Biotechnology", "Substrate Specificity"]}, "links": [{"href": "https://doi.org/10.1111/1751-7915.14404"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1751-7915.14404", "name": "item", "description": "10.1111/1751-7915.14404", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1751-7915.14404"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-04-01T00:00:00Z"}}, {"id": "10.1111/brv.12639", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:50Z", "type": "Journal Article", "created": "2020-08-06", "title": "Rate of environmental change across scales in ecology", "description": "ABSTRACT<p>The rate of change (RoC) of environmental drivers matters: biotic and abiotic components respond differently when faced with a fast or slow change in their environment. This phenomenon occurs across spatial scales and thus levels of ecological organization. We investigated the RoC of environmental drivers in the ecological literature and examined publication trends across ecological levels, including prevalent types of evidence and drivers. Research interest in environmental driver RoC has increased over time (particularly in the last decade), however, the amount of research and type of studies were not equally distributed across levels of organization and different subfields of ecology use temporal terminology (e.g. \uffe2\uff80\uff98abrupt\uffe2\uff80\uff99 and \uffe2\uff80\uff98gradual\uffe2\uff80\uff99) differently, making it difficult to compare studies. At the level of individual organisms, evidence indicates that responses and underlying mechanisms are different when environmental driver treatments are applied at different rates, thus we propose including a time dimension into reaction norms. There is much less experimental evidence at higher levels of ecological organization (i.e. population, community, ecosystem), although theoretical work at the population level indicates the importance of RoC for evolutionary responses. We identified very few studies at the community and ecosystem levels, although existing evidence indicates that driver RoC is important at these scales and potentially could be particularly important for some processes, such as community stability and cascade effects. We recommend shifting from a categorical (e.g. abrupt versus gradual) to a quantitative and continuous (e.g. \uffc2\uffb0C/h) RoC framework and explicit reporting of RoC parameters, including magnitude, duration and start and end points to ease cross\uffe2\uff80\uff90scale synthesis and alleviate ambiguity. Understanding how driver RoC affects individuals, populations, communities and ecosystems, and furthermore how these effects can feed back between levels is critical to making improved predictions about ecological responses to global change drivers. The application of a unified quantitative RoC framework for ecological studies investigating environmental driver RoC will both allow cross\uffe2\uff80\uff90scale synthesis to be accomplished more easily and has the potential for the generation of novel hypotheses.</p>", "keywords": ["0301 basic medicine", "570", "0303 health sciences", "Ecology", "abrupt", "rate of change", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie", "gradual", "15. Life on land", "03 medical and health sciences", "13. Climate action", "physiology", "Humans", "ecology", "Ecosystem", "global change", "time"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/brv.12639"}, {"href": "https://doi.org/10.1111/brv.12639"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biological%20Reviews", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/brv.12639", "name": "item", "description": "10.1111/brv.12639", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/brv.12639"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-08-05T00:00:00Z"}}, {"id": "10.1111/1758-2229.12119", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2013-11-04", "title": "Grazing Of Heterotrophic Flagellates On Viruses Is Driven By Feeding Behaviour", "description": "Summary<p>The trophic interactions between viruses, bacteria and protists play a crucial role in structuring microbial communities and regulating nutrient and organic matter flux. Here, we show that the impact on viral density by heterotrophic flagellates is related to their feeding behaviour (feeding on sedimented particles \uffe2\uff80\uff93 Thaumatomonas coloniensis, filter feeding of suspended particles \uffe2\uff80\uff93 Salpingoeca sp., and actively searching raptorial feeding \uffe2\uff80\uff93 Goniomonas truncata). Phage MS2 was co\uffe2\uff80\uff90incubated with flagellates and the natural bacterial and viral community originating from the same groundwater habitats where the flagellates were isolated. Three complementary assays, i.e. flow cytometry, qPCR and plaque assay, were used for enumeration of total viruses, total MS2 phages, and free and infectious MS2, respectively, to provide insights into the grazing mechanisms of the flagellates on viruses. Phage MS2 was actively removed by the suspension feeders T.\uffe2\uff80\uff89coloniensis and Salpingoeca sp. in contrast with the actively raptoriale grazer G.\uffe2\uff80\uff89truncata. The decline of viral titre was demonstrated to be caused by ingestion rather than random absorption by both qPCR and locating protein fluorescently labelled MS2 inside the flagellates. Further, we indicate that phages can be used as a minor carbon source for flagellates. Collectively, these data demonstrate that eliminating viruses can be an important function of protists in microbial food webs, carbon cycling and potentially water quality control.</p>", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Bacteria", "Viral Plaque Assay", "Viral Load", "Flow Cytometry", "Real-Time Polymerase Chain Reaction", "7. Clean energy", "Carbon", "6. Clean water", "03 medical and health sciences", "Cercozoa", "Cryptophyta", "Choanoflagellata", "Levivirus"]}, "links": [{"href": "https://doi.org/10.1111/1758-2229.12119"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1758-2229.12119", "name": "item", "description": "10.1111/1758-2229.12119", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1758-2229.12119"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-11-19T00:00:00Z"}}, {"id": "10.1111/1758-2229.13114", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2022-08-09", "title": "N\u2010damo, an opportunity to reduce methane emissions?", "description": "H2020 MGA EJP Cofund, EJP SOIL (TRACE-Soils), Grant/Award Number: 862695; HORIZON CSA, Project PREPSOIL, Grant/Award Number: 101070045", "keywords": ["Highlight", "0301 basic medicine", "2. Zero hunger", "0303 health sciences", "15. Life on land", "7. Clean energy", "6. Clean water", "12. Responsible consumption", "03 medical and health sciences", "13. Climate action", "11. Sustainability", "Denitrification", "Anaerobiosis", "Methane", "Oxidation-Reduction", "Nitrites"], "contacts": [{"organization": "G\u00f3mez\u2010Gallego, Tamara", "roles": ["creator"]}]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1758-2229.13114"}, {"href": "https://doi.org/10.1111/1758-2229.13114"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1758-2229.13114", "name": "item", "description": "10.1111/1758-2229.13114", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1758-2229.13114"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-08-09T00:00:00Z"}}, {"id": "10.1111/2041-210X.14483", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:50Z", "type": "Journal Article", "created": "2024-12-25", "title": "The Wayqecha Amazon Cloud Curtain Ecosystem Experiment: A new experimental method to manipulate fog water inputs in\u00a0terrestrial systems", "description": "Abstract<p>   <p>Fog makes a significant contribution to the hydrology of a wide range of important terrestrial ecosystems. The amount and frequency of fog immersion are affected by rapid ongoing anthropogenic changes but the impacts of these changes remain relatively poorly understood compared with changes in rainfall.</p>  <p>Here, we present the design and performance of a novel experiment to actively manipulate low lying fog abundance in an old\uffe2\uff80\uff90growth tropical montane cloud forest (TMCF) in Peru\uffe2\uff80\uff94the Wayqecha Amazon Cloud Curtain Ecosystem Experiment (WACCEE). The treatment consists of a 30\uffe2\uff80\uff89m high, 40\uffe2\uff80\uff89m wide mesh curtain suspended between two towers and extending down to the ground, and two supplementary curtains orientated diagonally inwards from the top of each tower and secured to the ground upslope. The curtains divert and intercept airborne water droplets in fog moving upslope, thereby depriving a ~420\uffe2\uff80\uff89m2 patch of forest immediately behind the curtains of this water source. We monitored inside the treatment and a nearby unmodified control plot various metrics of water availability (air humidity, vapour pressure deficit, leaf wetness and soil moisture) and other potentially confounding variables (radiation, air and soil temperature) above and below the forest canopy.</p>  <p>The treatment caused a strong reduction in both air humidity and leaf wetness, and an increase in vapour pressure deficit, above the canopy compared to the control plot. This effect was most pronounced during the nighttime (20:00\uffe2\uff80\uff9305:00). Below\uffe2\uff80\uff90canopy shifts within the treatment were more subtle: relative humidity at 2\uffe2\uff80\uff89m height above the ground was significantly suppressed during the daytime, while soil moisture was apparently elevated. The treatment caused a small but significant increase in air temperature above the canopy but a decrease in temperature in and near the soil, while mixed effects were observed at 2\uffe2\uff80\uff89m height above the ground. Above\uffe2\uff80\uff90canopy radiation was slightly elevated on the treatment relative to the control, particularly during the dry season.</p>  <p>Further application of the method in other systems where fog plays a major role in ecosystem processes could improve our understanding of the ecological impacts of this important but understudied climate driver.</p>  </p", "keywords": ["large-scale ecosystem manipulation", "Ekologi", "large\u2010scale ecosystem manipulation", "0301 basic medicine", "Ecology", "Evolution", "tropical montane cloud forest", "cloud moisture", "TCMF", "tropical", "drought", "01 natural sciences", "03 medical and health sciences", "climate change", "QH359-425", "QH540-549.5", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1111/2041-210X.14483"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Methods%20in%20Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/2041-210X.14483", "name": "item", "description": "10.1111/2041-210X.14483", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/2041-210X.14483"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-12-24T00:00:00Z"}}, {"id": "10.1111/2041-210x.14483", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:50Z", "type": "Journal Article", "created": "2024-12-24", "title": "The Wayqecha Amazon Cloud Curtain Ecosystem Experiment: A new experimental method to manipulate fog water inputs in\u00a0terrestrial systems", "description": "Abstract                   <p>                                                                     <p>Fog makes a significant contribution to the hydrology of a wide range of important terrestrial ecosystems. The amount and frequency of fog immersion are affected by rapid ongoing anthropogenic changes but the impacts of these changes remain relatively poorly understood compared with changes in rainfall.</p>                                                                       <p>                           Here, we present the design and performance of a novel experiment to actively manipulate low lying fog abundance in an old\uffe2\uff80\uff90growth tropical montane cloud forest (TMCF) in Peru\uffe2\uff80\uff94the Wayqecha Amazon Cloud Curtain Ecosystem Experiment (WACCEE). The treatment consists of a 30\uffe2\uff80\uff89m high, 40\uffe2\uff80\uff89m wide mesh curtain suspended between two towers and extending down to the ground, and two supplementary curtains orientated diagonally inwards from the top of each tower and secured to the ground upslope. The curtains divert and intercept airborne water droplets in fog moving upslope, thereby depriving a ~420\uffe2\uff80\uff89m                           2                           patch of forest immediately behind the curtains of this water source. We monitored inside the treatment and a nearby unmodified control plot various metrics of water availability (air humidity, vapour pressure deficit, leaf wetness and soil moisture) and other potentially confounding variables (radiation, air and soil temperature) above and below the forest canopy.                         </p>                                                                       <p>The treatment caused a strong reduction in both air humidity and leaf wetness, and an increase in vapour pressure deficit, above the canopy compared to the control plot. This effect was most pronounced during the nighttime (20:00\uffe2\uff80\uff9305:00). Below\uffe2\uff80\uff90canopy shifts within the treatment were more subtle: relative humidity at 2\uffe2\uff80\uff89m height above the ground was significantly suppressed during the daytime, while soil moisture was apparently elevated. The treatment caused a small but significant increase in air temperature above the canopy but a decrease in temperature in and near the soil, while mixed effects were observed at 2\uffe2\uff80\uff89m height above the ground. Above\uffe2\uff80\uff90canopy radiation was slightly elevated on the treatment relative to the control, particularly during the dry season.</p>                                                                       <p>Further application of the method in other systems where fog plays a major role in ecosystem processes could improve our understanding of the ecological impacts of this important but understudied climate driver.</p>                                                               </p", "keywords": ["large-scale ecosystem manipulation", "Ekologi", "large\u2010scale ecosystem manipulation", "0301 basic medicine", "Ecology", "Evolution", "tropical montane cloud forest", "cloud moisture", "TCMF", "tropical", "drought", "01 natural sciences", "03 medical and health sciences", "climate change", "QH359-425", "QH540-549.5", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1111/2041-210x.14483"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Methods%20in%20Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/2041-210x.14483", "name": "item", "description": "10.1111/2041-210x.14483", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/2041-210x.14483"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-12-24T00:00:00Z"}}, {"id": "10.1111/aab.12599", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:50Z", "type": "Journal Article", "created": "2020-04-28", "title": "Coexistent Mediterranean woody species as a driving factor of Phytophthora cinnamomi infectivity and survival", "description": "Abstract<p>The long\uffe2\uff80\uff90term conservation of Mediterranean mixed oak forests is seriously threatened by the massive mortality of Quercus suber caused by the exotic pathogen Phytophthora cinnamomi. This species frequently grows in mixed forests under natural conditions, but nothing is known about how its level of disease might be altered by the diversity and identity of coexisting neighbours varying in susceptibility to the exotic pathogen. Here we analysed the individual and combined effects of Q. suber and the main coexisting tree species (Quercus canariensis and Olea europaea subsp. europaea var. sylvestris) in mixed forests of southern Spain on the production of infective and survival spores of P. cinnamomi. Through in vitro experiments, it was demonstrated that mixtures of Q. suber and Q. canariensis highly stimulated the production of P. cinnamomi zoospores in comparison with both species in monocultures. Olea europaea did not stimulate zoospore production. Under controlled conditions, the initial and final densities of inoculum in soil planted with monocultures of O. europaea and Q. canariensis did not differ. However, inoculum densities significantly decreased along the experiment in Q. suber mixtures with O. europaea and Q. canariensis. Phytophthora cinnamomi was able to infect and cause root rot symptoms on all tree species, including O. europaea var. sylvestris. We concluded that mixed stands of Q. suber and Q. canariensis are able to stimulate P. cinnamomi infectivity and survival much more than monospecific stands, and consequently under favourable conditions for root disease development, the coexistence of Q. suber and Q. canariensis might exacerbate Mediterranean forests decline. This study also constitutes the first report of O. europaea var. sylvestris as host and inductor of P. cinnamomi sporulation under controlled conditions.</p>", "keywords": ["0301 basic medicine", "Europaea var", "0303 health sciences", "03 medical and health sciences", "Quercus suber", "olea europaea subsp", "Quercus canariensis", "Sylvestris", "Olea europaea subsp. europaea var. sylvestris", " Phytophthora interactions", " Quercus canariensis", " Quercus suber", " soil pathogens", "Phytophthora interactions", "15. Life on land", "Soil pathogens"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/aab.12599"}, {"href": "https://doi.org/10.1111/aab.12599"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Annals%20of%20Applied%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/aab.12599", "name": "item", "description": "10.1111/aab.12599", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/aab.12599"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-05-05T00:00:00Z"}}, {"id": "10.1111/cobi.13930", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:50Z", "type": "Journal Article", "created": "2022-05-05", "title": "Challenges of and opportunities for protecting European soil biodiversity", "description": "Abstract<p>Soil biodiversity and related ecosystem functions are neglected in most biodiversity assessments and nature conservation actions. We examined how society, and particularly policy makers, have addressed these factors worldwide with a focus on Europe and explored the role of soils in nature conservation in Germany as an example. We reviewed past and current global and European policies, compared soil ecosystem functioning in\uffe2\uff80\uff90 and outside protected areas, and examined the role of soils in nature conservation management via text analyses. Protection and conservation of soil biodiversity and soil ecosystem functioning have been insufficient. Soil\uffe2\uff80\uff90related policies are unenforceable and lack soil biodiversity conservation goals, focusing instead on other environmental objectives. We found no evidence of positive effects of current nature conservation measures in multiple soil ecosystem functions in Europe. In German conservation management, soils are considered only from a limited perspective (e.g., as physicochemical part of the environment and as habitat for aboveground organisms). By exploring policy, evidence, and management as it relates to soil ecosystems, we suggest an integrative perspective to move nature conservation toward targeting soil ecosystems directly (e.g., by setting baselines, monitoring soil threats, and establishing a soil indicator system).</p>", "keywords": ["0301 basic medicine", "570", "Conservation of Natural Resources", "0303 health sciences", "nature conservation", "soil biodiversity", "Biodiversity", "belowground", "Europe", "Soil", "03 medical and health sciences", "Biowissenschaften; Biologie", "Germany", "soil ecosystem functioning", "protected areas", "soil policy", "Ecosystem"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/cobi.13930"}, {"href": "https://doi.org/10.1111/cobi.13930"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Conservation%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/cobi.13930", "name": "item", "description": "10.1111/cobi.13930", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/cobi.13930"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-07-19T00:00:00Z"}}, {"id": "10.1111/ecog.05308", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:51Z", "type": "Journal Article", "created": "2021-01-19", "title": "Evaluating predictive performance of statistical models explaining wild bee abundance in a mass\u2010flowering crop", "description": "<p>Wild bee populations are threatened by current agricultural practices in many parts of the world, which may put pollination services and crop yields at risk. Loss of pollination services can potentially be predicted by models that link bee abundances with landscape\uffe2\uff80\uff90scale land\uffe2\uff80\uff90use, but there is little knowledge on the degree to which these statistical models are transferable across time and space. This study assesses the transferability of models for wild bee abundance in a mass\uffe2\uff80\uff90flowering crop across space (from one region to another) and across time (from one year to another). The models used existing data on bumblebee and solitary bee abundance in winter oilseed rape fields, together with high\uffe2\uff80\uff90resolution land\uffe2\uff80\uff90use crop\uffe2\uff80\uff90cover and semi\uffe2\uff80\uff90natural habitats data, from studies conducted in five different regions located in four countries (Sweden, Germany, Netherlands and the UK), in three different years (2011, 2012, 2013). We developed a hierarchical model combining all studies and evaluated the transferability using cross\uffe2\uff80\uff90validation. We found that both the landscape\uffe2\uff80\uff90scale cover of mass\uffe2\uff80\uff90flowering crops and permanent semi\uffe2\uff80\uff90natural habitats, including grasslands and forests, are important drivers of wild bee abundance in all regions. However, while the negative effect of increasing mass\uffe2\uff80\uff90flowering crops on the density of the pollinators is consistent between studies, the direction of the effect of semi\uffe2\uff80\uff90natural habitat is variable between studies. The transferability of these statistical models is limited, especially across regions, but also across time. Our study demonstrates the limits of using statistical models in conjunction with widely available land\uffe2\uff80\uff90use crop\uffe2\uff80\uff90cover classes for extrapolating pollinator density across years and regions, likely in part because input variables such as cover of semi\uffe2\uff80\uff90natural habitats poorly capture variability in pollinator resources between regions and years.</p>", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Model predictions", "Transferability in ecology", "Brassica napus", "wild pollinators", "mass flowering crops", "15. Life on land", "Mass flowering crops", "", "transferability in ecology", "03 medical and health sciences", "Permanent seminatural habitats", "model predictions", "ddc:570", "permanent semi-natural habitats", "Wild pollinators"]}, "links": [{"href": "https://centaur.reading.ac.uk/95616/1/ecog.05308.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/ecog.05308"}, {"href": "https://doi.org/10.1111/ecog.05308"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecography", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/ecog.05308", "name": "item", "description": "10.1111/ecog.05308", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/ecog.05308"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-01-19T00:00:00Z"}}, {"id": "10.1111/ddi.13146", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:51Z", "type": "Journal Article", "created": "2020-09-02", "title": "Shifting aspect or elevation? The climate change response of ectotherms in a complex mountain topography", "description": "AbstractAim<p>Climate change is expected to cause mountain species to shift their ranges to higher elevations. Due to the decreasing amounts of habitats with increasing elevation, such shifts are likely to increase their extinction risk. Heterogeneous mountain topography, however, may reduce this risk by providing microclimatic conditions that can buffer macroclimatic warming or provide nearby refugia. As aspect strongly influences the local microclimate, we here assess whether shifts from warm south\uffe2\uff80\uff90exposed aspects to cool north\uffe2\uff80\uff90exposed aspects in response to climate change can compensate for an upward shift into cooler elevations.</p>Location<p>Switzerland, Swiss Alps.</p>Methods<p>We built ensemble distribution models using high\uffe2\uff80\uff90resolution climate data for two mountain\uffe2\uff80\uff90dwelling viviparous ectotherms, the Alpine salamander and the Common lizard, and projected them into various future scenarios to gain insights into distributional changes. We further compared elevation and aspect (northness) of current and predicted future locations to analyse preferences and future shifts.</p>Results<p>Future ranges were consistently decreasing for the lizard, but for the salamander they were highly variable, depending on the climate scenario and threshold rule. Aspect preferences were elevation\uffe2\uff80\uff90dependent: warmer, south\uffe2\uff80\uff90exposed microclimates were clearly preferred at higher compared to lower elevations. In terms of presence and future locations, we observed both elevational upward shifts and northward shifts in aspect. Under future conditions, the shift to cooler north\uffe2\uff80\uff90exposed aspects was particularly pronounced at already warmer lower elevations.</p>Main conclusions<p>For our study species, shifts in aspect and elevation are complementary strategies to mitigate climatic warming in the complex mountain topography. This complements the long\uffe2\uff80\uff90standing view of elevational upward shift being their only option to move into areas with suitable future climate. High\uffe2\uff80\uff90resolution climate data are critical in heterogeneous environments to identify microrefugia and thereby improving future impact assessments of climate change.</p>", "keywords": ["0106 biological sciences", "0301 basic medicine", "570", "4290733-0", "elevation", "aspect", "Modellierung", "4077275-5", "ddc:900", "01 natural sciences", "4128128-7", "10127 Institute of Evolutionary Biology and Environmental Studies", "03 medical and health sciences", "4170297-9", "Schweizer Alpen", "Anthropogene Klima\u00e4nderung", "Wechselwarme", "aspect; climate change; ectotherms; microrefugia; mountain topography; Salamandra atra; species distribution modelling; Switzerland; thresholds; Zootoca vivipara", "4189352-9", "shift", "15. Life on land", "reptile", "1105 Ecology", " Evolution", " Behavior and Systematics", "climate change", "Geschichte und Geografie", "900", "13. Climate action", "Anpassung", "570 Life sciences; biology", "590 Animals (Zoology)", "amphibian", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/785568/2/feldmeier%202020%20divers%20distrib.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/ddi.13146"}, {"href": "https://doi.org/10.1111/ddi.13146"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Diversity%20and%20Distributions", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/ddi.13146", "name": "item", "description": "10.1111/ddi.13146", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/ddi.13146"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-08-26T00:00:00Z"}}, {"id": "10.1111/j.1574-6941.2011.01192.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:18Z", "type": "Journal Article", "created": "2011-09-01", "title": "Soil Characteristics More Strongly Influence Soil Bacterial Communities Than Land-Use Type", "description": "To gain insight into the factors driving the structure of bacterial communities in soil, we applied real-time PCR, PCR-denaturing gradient gel electrophoreses, and phylogenetic microarray approaches targeting the 16S rRNA gene across a range of different land usages in the Netherlands. We observed that the main differences in the bacterial communities were not related to land-use type, but rather to soil factors. An exception was the bacterial community of pine forest soils (PFS), which was clearly different from all other sites. PFS had lowest bacterial abundance, lowest numbers of operational taxonomic units (OTUs), lowest soil pH, and highest C : N ratios. C : N ratio strongly influenced bacterial community structure and was the main factor separating PFS from other fields. For the sites other than PFS, phosphate was the most important factor explaining the differences in bacterial communities across fields. Firmicutes were the most dominant group in almost all fields, except in PFS and deciduous forest soils (DFS). In PFS, Alphaproteobacteria was most represented, while in DFS, Firmicutes and Gammaproteobacteria were both highly represented. Interestingly, Bacillii and Clostridium OTUs correlated with pH and phosphate, which might explain their high abundance across many of the Dutch soils. Numerous bacterial groups were highly correlated with specific soil factors, suggesting that they might be useful as indicators of soil status.", "keywords": ["land use change", "DNA", " Bacterial", "0301 basic medicine", "RNA 16S", "polymerase chain reaction", "soil nitrogen", "DNA sequence", "soil microorganism", "electrokinesis", "chemistry", "phylogeny", "Real-Time Polymerase Chain Reaction", "soil", "Soil", "03 medical and health sciences", "NIOO", "RNA", " Ribosomal", " 16S", "genetics", "soil carbon", "Phylogeny", "Soil Microbiology", "phosphate", "biodiversity", "Alphaproteobacteria", "Netherlands", "growth", " development and aging", "2. Zero hunger", "abundance", "0303 health sciences", "real time", "Bacteria", "pH", "Denaturing Gradient Gel Electrophoresis", "microbiology", "denaturing gradient gel electrophoresis", "Biodiversity", "Sequence Analysis", " DNA", "15. Life on land", "bacterium", "bacterial DNA", "phylogenetics", "classification", "real time polymerase chain reaction", "microbial community", "Gammaproteobacteria"]}, "links": [{"href": "https://doi.org/10.1111/j.1574-6941.2011.01192.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/FEMS%20Microbiology%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1574-6941.2011.01192.x", "name": "item", "description": "10.1111/j.1574-6941.2011.01192.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1574-6941.2011.01192.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-09-19T00:00:00Z"}}, {"id": "10.1111/ejss.13430", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:52Z", "type": "Journal Article", "created": "2023-11-04", "title": "Effects of land use and soil properties on taxon richness and abundance of soil assemblages", "description": "Abstract<p>Land\uffe2\uff80\uff90use change and habitat degradation are among the biggest drivers of aboveground biodiversity worldwide but their effects on soil biodiversity are less well known, despite the importance of soil organisms in developing soil structure, nutrient cycling and water drainage. Combining a global compilation of biodiversity data from soil assemblages collated as part of the PREDICTS project with global data on soil characteristics, we modelled how taxon richness and total abundance of soil organisms have responded to land use. We also estimated the global Biodiversity Intactness Index (BII)\uffe2\uff80\uff94the average abundance and compositional similarity of taxa that remain in an area, compared to a minimally impacted baseline, for soil biodiversity. This is the first time the BII has been calculated for soil biodiversity. Relative to undisturbed vegetation, soil organism total abundance and taxon richness were reduced in all land uses except pasture. Soil properties mediated the response of soil biota, but not in a consistent way across land uses. The global soil BII in cropland is, on average, a third of that originally present. However, in grazed sites the decline is less severe. The BII of secondary vegetation depends on age, with sites with younger growth showing a lower BII than mature vegetation. We conclude that land\uffe2\uff80\uff90use change has reduced local soil biodiversity worldwide, and this further supports the proposition that soil biota should be considered explicitly when using global models to estimate the state of biodiversity.</p", "keywords": ["0301 basic medicine", "2. Zero hunger", "Biodiversity Intactness Index", "0303 health sciences", "03 medical and health sciences", "13. Climate action", "use intensity", "belowground biodiversity", "community composition", "15. Life on land", "global"]}, "links": [{"href": "https://www.iris.unict.it/bitstream/20.500.11769/605089/1/European%20J%20Soil%20Science%20-%202023%20-%20Burton%20-%20Effects%20of%20land%20use%20and%20soil%20properties%20on%20taxon%20richness%20and%20abundance%20of%20soil%20%281%29.pdf"}, {"href": "https://doi.org/10.1111/ejss.13430"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/European%20Journal%20of%20Soil%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/ejss.13430", "name": "item", "description": "10.1111/ejss.13430", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/ejss.13430"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-11-01T00:00:00Z"}}, {"id": "10.1111/ejss.13470", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:53Z", "type": "Journal Article", "created": "2024-03-14", "title": "Participatory soil citizen science: An unexploited resource for European soil research", "description": "Abstract<p>Soils are key components of our ecosystems and provide 95%\uffe2\uff80\uff9399% of our food. This importance is reflected by an increase in participatory citizen science projects on soils. Citizen science is a participatory research method that actively involves and engages the public in scientific enquiry to generate new knowledge or understanding. Here, we review past and current citizen science projects on agricultural soils across Europe. We conducted a web\uffe2\uff80\uff90based survey and described 24 reviewed European citizen science projects in the light of the 10 principles of citizen science and identified success factors for citizen science. Over 66% of the projects generated soil biodiversity data; 54% and 42% of the projects generated data on vegetation cover and soil organic carbon, respectively. Our findings show that soil citizen science projects aligned with the 10 principles of citizen science offer an unexploited resource for European soil health research. We conclude that promoting co\uffe2\uff80\uff90creation, fostering knowledge\uffe2\uff80\uff90sharing networks and enabling long\uffe2\uff80\uff90term communication and commitment with citizens are success factors for further development of citizen science on soils.</p", "keywords": ["0301 basic medicine", "2. Zero hunger", "570", "web-based survey", "soil health", "soil biodiversity", "[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study", "15. Life on land", "01 natural sciences", "333", "12. Responsible consumption", "03 medical and health sciences", "13. Climate action", "EJPSOIL", "EJPSOIL", " European agroecosystems", " participatory research", " soil biodiversity", " soil health", " web-based survey", "11. Sustainability", "European agroecosystems", "participatory research", "[SDV.SA.SDS] Life Sciences [q-bio]/Agricultural sciences/Soil study", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://iris.cnr.it/bitstream/20.500.14243/469825/1/2024_European%20J%20Soil%20Scienc_Mason.pdf"}, {"href": "https://doi.org/10.1111/ejss.13470"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/European%20Journal%20of%20Soil%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/ejss.13470", "name": "item", "description": "10.1111/ejss.13470", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/ejss.13470"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-03-01T00:00:00Z"}}, {"id": "10.1111/ele.13078", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:54Z", "type": "Journal Article", "created": "2018-05-08", "title": "Climatic role of terrestrial ecosystem under elevated CO2: a bottom-up greenhouse gases budget", "description": "Abstract<p>The net balance of greenhouse gas (GHG) exchanges between terrestrial ecosystems and the atmosphere under elevated atmospheric carbon dioxide (CO2) remains poorly understood. Here, we synthesise 1655 measurements from 169 published studies to assess GHGs budget of terrestrial ecosystems under elevated CO2. We show that elevated CO2 significantly stimulates plant C pool (NPP) by 20%, soil CO2 fluxes by 24%, and methane (CH4) fluxes by 34% from rice paddies and by 12% from natural wetlands, while it slightly decreases CH4 uptake of upland soils by 3.8%. Elevated CO2 causes insignificant increases in soil nitrous oxide (N2O) fluxes (4.6%), soil organic C (4.3%) and N (3.6%) pools. The elevated CO2\uffe2\uff80\uff90induced increase in GHG emissions may decline with CO2 enrichment levels. An elevated CO2\uffe2\uff80\uff90induced rise in soil CH4 and N2O emissions (2.76 Pg CO2\uffe2\uff80\uff90equivalent year\uffe2\uff88\uff921) could negate soil C enrichment (2.42 Pg CO2 year\uffe2\uff88\uff921) or reduce mitigation potential of terrestrial net ecosystem production by as much as 69% (NEP, 3.99 Pg CO2 year\uffe2\uff88\uff921) under elevated CO2. Our analysis highlights that the capacity of terrestrial ecosystems to act as a sink to slow climate warming under elevated CO2 might have been largely offset by its induced increases in soil GHGs source strength.</p>", "keywords": ["0106 biological sciences", "Greenhouse Effect", "0301 basic medicine", "Nitrous Oxide", "Carbon Dioxide", "15. Life on land", "01 natural sciences", "6. Clean water", "Greenhouse Gases", "Soil", "03 medical and health sciences", "13. Climate action", "Methane", "Ecosystem"]}, "links": [{"href": "https://doi.org/10.1111/ele.13078"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/ele.13078", "name": "item", "description": "10.1111/ele.13078", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/ele.13078"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-05-07T00:00:00Z"}}, {"id": "10.1111/ele.13648", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:54Z", "type": "Journal Article", "created": "2020-11-30", "title": "Soil element coupling is driven by ecological context and atomic mass", "description": "Abstract<p>The biogeochemical cycling of multiple soil elements is fundamental for life on Earth. Here, we conducted a global field survey across 16 chronosequences from contrasting biomes with soil ages ranging from centuries to millions of years. For this, we collected and analysed 435 topsoil samples (0\uffe2\uff80\uff9310\uffc2\uffa0cm) from 87 locations. We showed that high levels of topsoil element coupling, defined as the average correlation among nineteen soil elements, are maintained over geological timescales globally. Cross\uffe2\uff80\uff90biome changes in plant biodiversity, soil microbial structure, weathering, soil pH and texture, and mineral\uffe2\uff80\uff90free unprotected organic matter content largely controlled multi\uffe2\uff80\uff90element coupling. Moreover, elements with heavier atomic mass were naturally more decoupled and unpredictable in space than those with lighter mass. Only the coupling of carbon, nitrogen and phosphorus, which are essential to life on Earth, deviated from this predictable pattern, suggesting that this anomaly may be an undeniable fingerprint of life in terrestrial soils.</p", "keywords": ["2. Zero hunger", "0301 basic medicine", "Pedogenesis", "0303 health sciences", "Nitrogen", "Phosphorus", "Biodiversity", "15. Life on land", "Coupled biogeochemical cycles", "Carbon", "Atomic properties", "Soil", "03 medical and health sciences", "Biotic controllers", "Elementalcycles", "13. Climate action", "Chronosequences", "Ecosystem", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1111/ele.13648"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/ele.13648", "name": "item", "description": "10.1111/ele.13648", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/ele.13648"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-30T00:00:00Z"}}, {"id": "10.1111/nph.15744", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:23Z", "type": "Journal Article", "created": "2019-02-14", "title": "Exploring the agricultural parameter space for crop yield and sustainability", "keywords": ["Crops", " Agricultural", "0301 basic medicine", "Soil", "03 medical and health sciences", "0401 agriculture", " forestry", " and fisheries", "Agriculture", "04 agricultural and veterinary sciences", "Sustainable Development", "Ecosystem"]}, "links": [{"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.15744"}, {"href": "https://doi.org/10.1111/nph.15744"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.15744", "name": "item", "description": "10.1111/nph.15744", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.15744"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-03-07T00:00:00Z"}}, {"id": "10.1111/ele.13632", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:54Z", "type": "Journal Article", "created": "2020-08-11", "title": "Soil fungal mycelia have unexpectedly flexible stoichiometric C:N and C:P ratios", "description": "Abstract<p>Soil ecological stoichiometry provides powerful theories to integrate the complex interplay of element cycling and microbial communities into biogeochemical models. One essential assumption is that microbes maintain stable C:N:P (carbon:nitrogen:phosphorus) ratios independent of resource supply, although such homeostatic regulations have rarely been assessed in individual microorganisms. Here, we report an unexpected high flexibility in C:N and C:P values of saprobic fungi along nutrient supply gradients, overall ranging between 7\uffe2\uff80\uff90126 and 20\uffe2\uff80\uff901488, respectively, questioning microbial homeostasis. Fungal N:P varied comparatively less due to simultaneous reductions in mycelial N and P contents. As a mechanism, internal recycling processes during mycelial growth and an overall reduced N and P uptake appear more relevant than element storage. The relationships among fungal stoichiometry and growth disappeared in more complex media. These findings affect our interpretation of stoichiometric imbalances among microbes and soils and are highly relevant for developing microbial soil organic carbon and nitrogen models.</p>", "keywords": ["saprobic fungi", "0106 biological sciences", "0301 basic medicine", "2. Zero hunger", "570", "fungal nutrient retranslocation", "Nitrogen", "nutrient limitations", "microbial carbon sequestration", "Phosphorus", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie", "15. Life on land", "01 natural sciences", "Carbon", "soil ecological stoichiometry", "Soil", "element homeostasis", "03 medical and health sciences", "13. Climate action", "mycelial growth", "C:N:P ratios", "Soil Microbiology"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/ele.13632"}, {"href": "https://doi.org/10.1111/ele.13632"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/ele.13632", "name": "item", "description": "10.1111/ele.13632", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/ele.13632"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-08-11T00:00:00Z"}}, {"id": "10.1111/gcb.13013", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:55Z", "type": "Journal Article", "created": "2015-06-27", "title": "Canopy Warming Caused Photosynthetic Acclimation And Reduced Seed Yield In Maize Grown At Ambient And Elevated [Co2]", "description": "Abstract<p>Rising atmosphericCO2concentration ([CO2]) and attendant increases in growing season temperature are expected to be the most important global change factors impacting production agriculture. Although maize is the most highly produced crop worldwide, few studies have evaluated the interactive effects of elevated [CO2] and temperature on its photosynthetic physiology, agronomic traits or biomass, and seed yield under open field conditions. This study investigates the effects of rising [CO2] and warmer temperature, independently and in combination, on maize grown in the field throughout a full growing season. Free\uffe2\uff80\uff90airCO2enrichment (FACE) technology was used to target atmospheric [CO2] to 200\uffc2\uffa0\uffce\uffbcmol\uffc2\uffa0mol\uffe2\uff88\uff921above ambient [CO2] and infrared heaters to target a plant canopy increase of 3.5\uffc2\uffa0\uffc2\uffb0C, with actual season mean heating of ~2.7\uffc2\uffa0\uffc2\uffb0C, mimicking conditions predicted by the second half of this century. Photosynthetic gas\uffe2\uff80\uff90exchange parameters, leaf nitrogen and carbon content, leaf water potential components, and developmental measurements were collected throughout the season, and biomass and yield were measured at the end of the growing season. As predicted for a C4plant, elevated [CO2] did not stimulate photosynthesis, biomass, or yield. Canopy warming caused a large shift in aboveground allocation by stimulating season\uffe2\uff80\uff90long vegetative biomass and decreasing reproductive biomass accumulation at bothCO2concentrations, resulting in decreased harvest index. Warming caused a reduction in photosynthesis due to down\uffe2\uff80\uff90regulation of photosynthetic biochemical parameters and the decrease in the electron transport rate. The reduction in seed yield with warming was driven by reduced photosynthetic capacity and by a shift in aboveground carbon allocation away from reproduction. This field study portends that future warming will reduce yield in maize, and this will not be mitigated by higher atmospheric [CO2] unless appropriate adaptation traits can be introduced into future cultivars.</p>", "keywords": ["0301 basic medicine", "2. Zero hunger", "03 medical and health sciences", "Hot Temperature", "13. Climate action", "Acclimatization", "Seeds", "Illinois", "Carbon Dioxide", "Photosynthesis", "15. Life on land", "Zea mays"]}, "links": [{"href": "https://doi.org/10.1111/gcb.13013"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.13013", "name": "item", "description": "10.1111/gcb.13013", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.13013"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-09-23T00:00:00Z"}}, {"id": "10.1111/gcb.14139", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:56Z", "type": "Journal Article", "created": "2018-03-23", "title": "Elevated CO 2 did not affect the hydrological balance of a mature native Eucalyptus woodland", "description": "Abstract<p>Elevated atmospheric CO2 concentration (eCa) might reduce forest water\uffe2\uff80\uff90use, due to decreased transpiration, following partial stomatal closure, thus enhancing water\uffe2\uff80\uff90use efficiency and productivity at low water availability. If evapotranspiration (Et) is reduced, it may subsequently increase soil water storage (\uffce\uff94S) or surface runoff (R) and drainage (Dg), although these could be offset or even reversed by changes in vegetation structure, mainly increased leaf area index (L). To understand the effect of eCa in a water\uffe2\uff80\uff90limited ecosystem, we tested whether 2\uffc2\uffa0years of eCa (~40% increase) affected the hydrological partitioning in a mature water\uffe2\uff80\uff90limited Eucalyptus woodland exposed to Free\uffe2\uff80\uff90Air CO2 Enrichment (FACE). This timeframe allowed us to evaluate whether physiological effects of eCa reduced stand water\uffe2\uff80\uff90use irrespective of L, which was unaffected by eCa in this timeframe. We hypothesized that eCa would reduce tree\uffe2\uff80\uff90canopy transpiration (Etree), but excess water from reduced Etree would be lost via increased soil evaporation and understory transpiration (Efloor) with no increase in \uffce\uff94S, R or Dg. We computed Et, \uffce\uff94S, R and Dg from measurements of sapflow velocity, L, soil water content (\uffce\uffb8), understory micrometeorology, throughfall and stemflow. We found that eCa did not affect Etree, Efloor, \uffce\uff94S or \uffce\uffb8 at any depth (to 4.5\uffc2\uffa0m) over the experimental period. We closed the water balance for dry seasons with no differences in the partitioning to R and Dg between Ca levels. Soil temperature and \uffce\uffb8 were the main drivers of Efloor while vapour pressure deficit\uffe2\uff80\uff90controlled Etree, though eCa did not significantly affect any of these relationships. Our results suggest that in the short\uffe2\uff80\uff90term, eCa does not significantly affect ecosystem water\uffe2\uff80\uff90use at this site. We conclude that water\uffe2\uff80\uff90savings under eCa mediated by either direct effects on plant transpiration or by indirect effects via changes in L or soil moisture availability are unlikely in water\uffe2\uff80\uff90limited mature eucalypt woodlands.</p>", "keywords": ["plant-water relationships", "[SDE] Environmental Sciences", "0106 biological sciences", "0301 basic medicine", "Vapor Pressure", "[SDV]Life Sciences [q-bio]", "interception", "Forests", "01 natural sciences", "free-air CO2 enrichment", "Soil", "03 medical and health sciences", "XXXXXX - Unknown", "water-use efficiency", "0105 earth and related environmental sciences", "580", "tree water", "Eucalyptus", "Temperature", "carbon dioxide", "Water", "Plant Transpiration", "Carbon Dioxide", "15. Life on land", "Eucalyptus tereticornis", "6. Clean water", "[SDV] Life Sciences [q-bio]", "Plant Leaves", "climate change", "stomatal conductance", "13. Climate action", "[SDE]Environmental Sciences", "Seasons", "Hydrology"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.14139"}, {"href": "https://doi.org/10.1111/gcb.14139"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.14139", "name": "item", "description": "10.1111/gcb.14139", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.14139"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-04-17T00:00:00Z"}}, {"id": "10.1111/gcb.14306", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:56Z", "type": "Journal Article", "created": "2018-05-11", "title": "Effects of climate legacies on above\u2010 and belowground community assembly", "description": "Abstract<p>The role of climatic legacies in regulating community assembly of above\uffe2\uff80\uff90 and belowground species in terrestrial ecosystems remains largely unexplored and poorly understood. Here, we report on two separate regional and continental empirical studies, including &gt;500 locations, aiming to identify the relative importance of climatic legacies (climatic anomaly over the last 20,000\uffc2\uffa0years) compared to current climates in predicting the relative abundance of ecological clusters formed by species strongly co\uffe2\uff80\uff90occurring within two independent above\uffe2\uff80\uff90 and belowground networks. Climatic legacies explained a significant portion of the variation in the current community assembly of terrestrial ecosystems (up to 15.4%) that could not be accounted for by current climate, soil properties, and management. Changes in the relative abundance of ecological clusters linked to climatic legacies (e.g., past temperature) showed the potential to indirectly alter other clusters, suggesting cascading effects. Our work illustrates the role of climatic legacies in regulating ecosystem community assembly and provides further insights into possible winner and loser community assemblies under global change scenarios.</p", "keywords": ["0301 basic medicine", "0303 health sciences", "Climate Change", "Australia", "Fungi", "Forests", "15. Life on land", "Bacterial Physiological Phenomena", "Invertebrates", "Trees", "Soil", "03 medical and health sciences", "13. Climate action", "XXXXXX - Unknown", "Vertebrates", "Animals", "Paleoclimate", " Bacteria", " Fungi", " Plants", " Animals", " Terrestrial ecosystems", " Ecological networks.", "Soil Microbiology"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.14306"}, {"href": "https://doi.org/10.1111/gcb.14306"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.14306", "name": "item", "description": "10.1111/gcb.14306", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.14306"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-05-30T00:00:00Z"}}, {"id": "10.1111/gcb.14399", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:56Z", "type": "Journal Article", "created": "2018-07-14", "title": "Pathways regulating decreased soil respiration with warming in a biocrust\u2010dominated dryland", "description": "Abstract<p>A positive soil carbon (C)\uffe2\uff80\uff90climate feedback is embedded into the climatic models of the IPCC. However, recent global syntheses indicate that the temperature sensitivity of soil respiration (RS) in drylands, the largest biome on Earth, is actually lower in warmed than in control plots. Consequently, soil C losses with future warming are expected to be low compared with other biomes. Nevertheless, the empirical basis for these global extrapolations is still poor in drylands, due to the low number of field experiments testing the pathways behind the long\uffe2\uff80\uff90term responses of soil respiration (RS) to warming. Importantly, global drylands are covered with biocrusts (communities formed by bryophytes, lichens, cyanobacteria, fungi, and bacteria), and thus,RSresponses to warming may be driven by both autotrophic and heterotrophic pathways. Here, we evaluated the effects of 8\uffe2\uff80\uff90year experimental warming onRS, and the different pathways involved, in a biocrust\uffe2\uff80\uff90dominated dryland in southern Spain. We also assessed the overall impacts on soil organic C (SOC) accumulation over time. Across the years and biocrust cover levels, warming reducedRSby 0.30\uffc2\uffa0\uffce\uffbcmol\uffc2\uffa0CO2\uffc2\uffa0m\uffe2\uff88\uff922\uffc2\uffa0s\uffe2\uff88\uff921(95% CI\uffc2\uffa0=\uffc2\uffa0\uffe2\uff88\uff920.24 to 0.84), although the negative warming effects were only significant after 3\uffc2\uffa0years of elevated temperatures in areas with low initial biocrust cover. We found support for different pathways regulating the warming\uffe2\uff80\uff90induced reduction inRSat areas with low (microbial thermal acclimation via reduced soil mass\uffe2\uff80\uff90specific respiration and \uffce\uffb2\uffe2\uff80\uff90glucosidase enzymatic activity) vs. high (microbial thermal acclimation jointly with a reduction in autotrophic respiration from decreased lichen cover) initial biocrust cover. Our 8\uffe2\uff80\uff90year experimental study shows a reduction in soil respiration with warming and highlights that biocrusts should be explicitly included in modeling efforts aimed to quantify the soil C\uffe2\uff80\uff93climate feedback in drylands.</p", "keywords": ["0301 basic medicine", "Lichens", "Climate Change", "Bryophyta", "Bacterial Physiological Phenomena", "Cyanobacteria", "Carbon Cycle", "Soil", "03 medical and health sciences", "XXXXXX - Unknown", "soil organic carbon accumulation", "Ecosystem", "Soil Microbiology", "2. Zero hunger", "Autotrophic Processes", "0303 health sciences", "Fungi", "Temperature", "substrate depletion", "Heterotrophic Processes", "15. Life on land", "Carbon", "3. Good health", "climate change", "Spain", "13. Climate action", "autotrophic soil respiration", "microbial thermal acclimation"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.14399"}, {"href": "https://doi.org/10.1111/gcb.14399"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.14399", "name": "item", "description": "10.1111/gcb.14399", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.14399"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-08-03T00:00:00Z"}}, {"id": "10.1111/gcb.14582", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:56Z", "type": "Journal Article", "created": "2019-02-26", "title": "Volatile emissions from thawing permafrost soils are influenced by meltwater drainage conditions", "description": "Abstract<p>Vast amounts of carbon are bound in both active layer and permafrost soils in the Arctic. As a consequence of climate warming, the depth of the active layer is increasing in size and permafrost soils are thawing. We hypothesize that pulses of biogenic volatile organic compounds are released from the near\uffe2\uff80\uff90surface active layer during spring, and during late summer season from thawing permafrost, while the subsequent biogeochemical processes occurring in thawed soils also lead to emissions. Biogenic volatile organic compounds are reactive gases that have both negative and positive climate forcing impacts when introduced to the Arctic atmosphere, and the knowledge of their emission magnitude and pattern is necessary to construct reliable climate models. However, it is unclear how different ecosystems and environmental factors such as drainage conditions upon permafrost thaw affect the emission and compound composition. Here we show that incubations of frozen B horizon of the active layer and permafrost soils collected from a High Arctic heath and fen release a range of biogenic volatile organic compounds upon thaw and during subsequent incubation experiments at temperatures of 10\uffc2\uffb0C and 20\uffc2\uffb0C. Meltwater drainage in the fen soils increased emission rates nine times, while having no effect in the drier heath soils. Emissions generally increased with temperature, and emission profiles for the fen soils were dominated by benzenoids and alkanes, while benzenoids, ketones, and alcohols dominated in heath soils. Our results emphasize that future changes affecting the drainage conditions of the Arctic tundra will have a large influence on volatile emissions from thawing permafrost soils \uffe2\uff80\uff93 particularly in wetland/fen areas.</p>", "keywords": ["0301 basic medicine", "tundra", "Climate Change", "Permafrost", "01 natural sciences", "meltwater drainage", "Soil", "03 medical and health sciences", "Arctic", "11. Sustainability", "biogenic volatile organic compounds", "gas fluxes", "Tundra", "0105 earth and related environmental sciences", "Volatile Organic Compounds", "Arctic Regions", "Water", "15. Life on land", "soil ecology", "climate change", "13. Climate action", "Gases", "Seasons", "permafrost", "Environmental Monitoring"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.14582"}, {"href": "https://doi.org/10.1111/gcb.14582"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.14582", "name": "item", "description": "10.1111/gcb.14582", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.14582"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-02-25T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=0301+basic+medicine&offset=700&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=0301+basic+medicine&offset=700&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "prev", "title": "items (prev)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=0301+basic+medicine&offset=650", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=0301+basic+medicine&offset=750", "hreflang": "en-US"}], "numberMatched": 1858, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-04-04T13:27:56.414310Z"}