Legume roots can be symbiotically colonized by arbuscular mycorrhizal (AM) fungi and nitrogen-fixing bacteria. In Lotus japonicus, the latter occurs intracellularly by the cognate rhizobial partner Mesorhizobium loti or intercellularly with the Agrobacterium pusense strain IRBG74. Although these symbiotic programs show distinctive cellular and transcriptome signatures, some molecular components are shared. In this study, we demonstrate that 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 1 (DAHPS1), the first enzyme in the biosynthetic pathway of aromatic amino acids (AAAs), plays a critical role in root hair development and for AM and rhizobial symbioses in Lotus. Two homozygous DAHPS1 mutants (dahps1-1 and dahps1-2) showed drastic alterations in root hair morphology, associated with alterations in cell wall dynamics and a progressive disruption of the actin cytoskeleton. The altered root hair structure was prevented by pharmacological and genetic complementation. dahps1-1 and dahps1-2 showed significant reductions in rhizobial infection (intracellular and intercellular) and nodule organogenesis and a delay in AM colonization. RNAseq analysis of dahps1-2 roots suggested that these phenotypes are associated with downregulation of several cell wall\uffe2\uff80\uff93related genes, and with an attenuated signaling response. Interestingly, the dahps1 mutants showed no detectable pleiotropic effects, suggesting a more selective recruitment of this gene in certain biological processes. This work provides robust evidence linking AAA metabolism to root hair development and successful symbiotic associations. The ice-free McMurdo Dry Valleys of Antarctica are dominated by nutrient-poor mineral soil and rocky outcrops. The principal habitat for microorganisms is within rocks (endolithic). In this environment, microorganisms are provided with protection against sub-zero temperatures, rapid thermal fluctuations, extreme dryness, and ultraviolet and solar radiation. Endolithic communities include lichen, algae, fungi, and a diverse array of bacteria. Chloroflexota is among the most abundant bacterial phyla present in these communities. Among the Chloroflexota are four novel classes of bacteria, here named Candidatus Spiritibacteria class. nov. (=UBA5177), Candidatus Martimicrobia class. nov. (=UBA4733), Candidatus Tarhunnaeia class. nov. (=UBA6077), and Candidatus Uliximicrobia class. nov. (=UBA2235). We retrieved 17 high-quality metagenome-assembled genomes (MAGs) that represent these four classes. Based on genome predictions, all these bacteria are inferred to be aerobic heterotrophs that encode enzymes for the catabolism of diverse sugars. These and other organic substrates are likely derived from lichen, algae, and fungi, as metabolites (including photosynthate), cell wall components, and extracellular matrix components. The majority of MAGs encode the capacity for trace gas oxidation using high-affinity uptake hydrogenases, which could provide energy and metabolic water required for survival and persistence. Furthermore, some MAGs encode the capacity to couple the energy generated from H 2 and CO oxidation to support carbon fixation (atmospheric chemosynthesis). All encode mechanisms for the detoxification and efflux of heavy metals. Certain MAGs encode features that indicate possible interactions with other organisms, such as Tc-type toxin complexes, hemolysins, and macroglobulins.
IMPORTANCEThe ice-free McMurdo Dry Valleys of Antarctica are the coldest and most hyperarid desert on Earth. It is, therefore, the closest analog to the surface of the planet Mars. Bacteria and other microorganisms survive by inhabiting airspaces within rocks (endolithic). We identify four novel classes of phylum Chloroflexota , and, based on interrogation of 17 metagenome-assembled genomes, we predict specific metabolic and physiological adaptations that facilitate the survival of these bacteria in this harsh environment\uffe2\uff80\uff94including oxidation of trace gases and the utilization of nutrients (including sugars) derived from lichen, algae, and fungi. We propose that such adaptations allow these endolithic bacteria to eke out an existence in this cold and extremely dry habitat.
", "keywords": ["570", "Bacteria", "Fungi", "Antarctic Regions", "Chloroflexi", "15. Life on land", "Survival strategies", "Cold Temperature", "Extremophiles", "13. Climate action", "Antarctica", "Endolithic communities", "Metagenomics", "14. Life underwater", "Sugars", "Settore BIO/19 - MICROBIOLOGIA GENERALE"]}, "links": [{"href": "https://doi.org/10.1128/aem.02264-23"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.02264-23", "name": "item", "description": "10.1128/aem.02264-23", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.02264-23"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-02-19T00:00:00Z"}}, {"id": "10.3389/fmicb.2022.983823", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:21:32Z", "type": "Journal Article", "created": "2022-11-08", "title": "Long-term effects of early-life rumen microbiota modulation on dairy cow production performance and methane emissions", "description": "Rumen microbiota modulation during the pre-weaning period has been suggested as means to affect animal performance later in life. In this follow-up study, we examined the post-weaning rumen microbiota development differences in monozygotic twin-heifers that were inoculated (T-group) or not inoculated (C-group) (n\uffe2\uff80\uff89=\uffe2\uff80\uff894 each) with fresh adult rumen liquid during their pre-weaning period. We also assessed the treatment effect on production parameters and methane emissions of cows during their 1st lactation period. The rumen microbiota was determined by the 16S rRNA gene, 18S rRNA gene, and ITS1 amplicon sequencing. Animal weight gain and rumen fermentation parameters were monitored from 2 to 12\uffe2\uff80\uff89months of age. The weight gain was not affected by treatment, but butyrate proportion was higher in T-group in month 3 (p\uffe2\uff80\uff89=\uffe2\uff80\uff890.04). Apart from archaea (p\uffe2\uff80\uff89=\uffe2\uff80\uff890.084), the richness of bacteria (p\uffe2\uff80\uff89<\uffe2\uff80\uff890.0001) and ciliate protozoa increased until month 7 (p\uffe2\uff80\uff89=\uffe2\uff80\uff890.004) and anaerobic fungi until month 11 (p\uffe2\uff80\uff89=\uffe2\uff80\uff890.005). The microbiota structure, measured as Bray\uffe2\uff80\uff93Curtis distances, continued to develop until months 3, 6, 7, and 10, in archaea, ciliate protozoa, bacteria, and anaerobic fungi, respectively (for all: p\uffe2\uff80\uff89=\uffe2\uff80\uff890.001). Treatment or age \uffc3\uff97 treatment interaction had a significant (p\uffe2\uff80\uff89<\uffe2\uff80\uff890.05) effect on 18 bacterial, 2 archaeal, and 6 ciliate protozoan taxonomic groups, with differences occurring mostly before month 4 in bacteria, and month 3 in archaea and ciliate protozoa. Treatment stimulated earlier maturation of prokaryote community in T-group before month 4 and earlier maturation of ciliate protozoa at month 2 (Random Forest: 0.75\uffe2\uff80\uff89month for bacteria and 1.5\uffe2\uff80\uff89month for protozoa). No treatment effect on the maturity of anaerobic fungi was observed. The milk production and quality, feed efficiency, and methane emissions were monitored during cow\uffe2\uff80\uff99s 1st lactation. The T-group had lower variation in energy-corrected milk yield (p\uffe2\uff80\uff89<\uffe2\uff80\uff890.001), tended to differ in pattern of residual energy intake over time (p\uffe2\uff80\uff89=\uffe2\uff80\uff890.069), and had numerically lower somatic cell count throughout their 1st lactation period (p\uffe2\uff80\uff89=\uffe2\uff80\uff890.081), but no differences between the groups in methane emissions (g/d, g/kg DMI, or g/kg milk) were observed. Our results demonstrated that the orally administered microbial inoculant induced transient changes in early rumen microbiome maturation. In addition, the treatment may influence the later production performance, although the mechanisms that mediate these effects need to be further explored.
", "keywords": ["microbiome modulation", "0301 basic medicine", "570", "ta412", "microbiome establishment", "Heifer", "dairy cow", "Rumen function", "Animal science", " dairy science", "Microbiology", "630", "Microbiome modulation", "QR1-502", "rumen function", "Microbiome establishment", "03 medical and health sciences", "Dairy cow", "heifer"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2022.983823"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2022.983823", "name": "item", "description": "10.3389/fmicb.2022.983823", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2022.983823"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-11-08T00:00:00Z"}}, {"id": "10.1002/ecs2.1804", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:14:35Z", "type": "Journal Article", "created": "2017-05-10", "title": "Non-Target Impacts Of Weed Control On Birds, Mammals, And Reptiles", "description": "AbstractThe impacts of invasive plant control on native animals are rarely evaluated. Using data from an eight\uffe2\uff80\uff90year study in southeastern Australia, we quantified the effects on native bird, mammal, and reptile species of (1) the abundance of the invasive Bitou Bush, Chrysanthemoides monilifera ssp. rotundata, and (2) a Bitou Bush control program, which involved repeated herbicide spraying interspersed with prescribed burning. We found that overall species richness of birds, mammals, and reptiles and the majority of individual vertebrate species were unresponsive to Bitou Bush cover and the number of plants. Two species including the nationally endangered Eastern Bristlebird (Dasyurus brachypterus) responded positively to measures of native vegetation cover following the control of Bitou Bush. Analyses of the effects of different components of the treatment protocol employed to control Bitou Bush revealed (1) no negative effects of spraying on vertebrate species richness; (2) negative effects of spraying on only one individual species (Scarlet Honeyeater); and (3) lower bird species richness but higher reptile species richness after fire. The occupancy of most individual vertebrates species was unaffected by burning; four species responded negatively and one positively to fire. Our study indicated that actions to remove Bitou Bush generally have few negative impacts on native vertebrates. We therefore suggest that controlling this highly invasive exotic plant species has only very limited negative impacts on vertebrate biota.
", "keywords": ["0106 biological sciences", "weed control", "570", "Secondary effects", "off-target impacts", "animal response to weed control", "Indirect impacts", "Fire management", "590", "Non-target impacts", "herbicide impact on animals", "Herbicide impact on animals", "01 natural sciences", "invasive alien plant management", "fire management", "indirect impacts", "14. Life underwater", "non-target impacts", "Invasive alien plant management", "weed management impacts", "Animal response to weed control", "Bitou Bush", "580", "secondary effects", "Weed management impacts", "15. Life on land", "Weed control", "Off-target impacts", "3. Good health", "13. Climate action"]}, "links": [{"href": "https://eprints.soton.ac.uk/407435/1/Lindenmayer_et_al_2017_Ecopshere.pdf"}, {"href": "https://openresearch-repository.anu.edu.au/bitstream/1885/244051/3/01_Lindenmayer_Non-target_impacts_of_weed_2017.pdf.jpg"}, {"href": "https://doi.org/10.1002/ecs2.1804"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ecs2.1804", "name": "item", "description": "10.1002/ecs2.1804", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ecs2.1804"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-05-01T00:00:00Z"}}, {"id": "10.1002/ecy.1513", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:14:35Z", "type": "Journal Article", "created": "2016-07-02", "title": "Land Use Intensification In The Humid Tropics Increased Both Alpha And Beta Diversity Of Soil Bacteria", "description": "AbstractAnthropogenic pressures on tropical forests are rapidly intensifying, but our understanding of their implications for biological diversity is still very limited, especially with regard to soil biota, and in particular soil bacterial communities. Here we evaluated bacterial community composition and diversity across a gradient of land use intensity in the eastern Amazon from undisturbed primary forest, through primary forests varyingly disturbed by fire, regenerating secondary forest, pasture, and mechanized agriculture. Soil bacteria were assessed by paired\uffe2\uff80\uff90end Illumina sequencing of 16S rRNA gene fragments (V4 region). The resulting sequences were clustered into operational taxonomic units (OTU) at a 97% similarity threshold. Land use intensification increased the observed bacterial diversity (both OTU richness and community heterogeneity across space) and this effect was strongly associated with changes in soil pH. Moreover, land use intensification and subsequent changes in soil fertility, especially pH, altered the bacterial community composition, with pastures and areas of mechanized agriculture displaying the most contrasting communities in relation to undisturbed primary forest. Together, these results indicate that tropical forest conversion impacts soil bacteria not through loss of diversity, as previously thought, but mainly by imposing marked shifts on bacterial community composition, with unknown yet potentially important implications for ecological functions and services performed by these communities.
", "keywords": ["Rios de composi\u00e7\u00e3o de comunidade bacteriana", "2. Zero hunger", "0301 basic medicine", "570", "0303 health sciences", "550", "Bacteria", "Biodiversidade subterr\u00e2nea", "Agriculture", "Biodiversity", "Forests", "15. Life on land", "Below\u2010ground biodiversity", "High\u2010throughput sequencing", "Soil", "03 medical and health sciences", "RNA", " Ribosomal", " 16S", "Sequenciamento de alto rendimento", "Rivers of bacterial community composition", "Soil Microbiology"]}, "links": [{"href": "https://eprints.lancs.ac.uk/id/eprint/82660/1/de_Carvalho_et_al_2016_raw_pdf.pdf"}, {"href": "https://doi.org/10.1002/ecy.1513"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ecy.1513", "name": "item", "description": "10.1002/ecy.1513", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ecy.1513"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-09-09T00:00:00Z"}}, {"id": "10.1016/j.fcr.2017.04.016", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:16:43Z", "type": "Journal Article", "created": "2017-05-05", "title": "Is Maize-Cowpea Intercropping A Viable Option For Smallholder Farms In The Risky Environments Of Semi-Arid Southern Africa?", "description": "Intercropping cereals with legumes can potentially enhance productivity and soil fertility. There is limited experimental evidence on the mechanisms underlying benefits or risks in intercropping systems and below-ground interactions in intercrops remain largely unstudied. Such understanding can inform strategies towards maximising returns to investments, particularly in poor fertility soils on smallholder farms in semi-arid areas of sub-Saharan Africa. Additive intercropping experiments were established covering several seasons (2010/11\u20132014/15) and different conditions (on-station and on-farm) to determine effects on soil chemical variables, root dynamics and yield of intercrops. Maize was planted with the first effective rains and received either no fertiliser or 40 kg N ha\u22121. Cowpea was planted on the same date as maize or three weeks after planting maize in intercrops or sole stands and received no fertiliser. End-of-season available N was highest (P 1. Intercropping, however, resulted in compromised cowpea yields especially under the relay intercrop compared with the sole cowpea stands whilst maize yield was either not affected or improved. We attributed this to the lack of below-ground niche differentiation in root distribution between maize and cowpea. Maize\u2013cowpea intercropping with low doses of N fertiliser resulted in over-yielding compared with monocropping. Intercropping proved to be a robust option across seasons and soil types, confirming that it is a promising option for resource-poor smallholders.", "keywords": ["Zimbabwe", "Interspecific facilitation", "Root length density", "2. Zero hunger", "570", "Cereals", "04 agricultural and veterinary sciences", "15. Life on land", "630", "Land-use efficiency", "Maize", "Soil", "Niche differentiation", "Intercropping", "Drylands Agriculture", "African Agriculture", "Legume Crops", "0401 agriculture", " forestry", " and fisheries", "Crop Yield", "Root distribution", "Southern Africa", "Below-ground complementarity"]}, "links": [{"href": "https://doi.org/10.1016/j.fcr.2017.04.016"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Field%20Crops%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.fcr.2017.04.016", "name": "item", "description": "10.1016/j.fcr.2017.04.016", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.fcr.2017.04.016"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-08-01T00:00:00Z"}}, {"id": "10.1039/c9ew00220k", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:18:31Z", "type": "Journal Article", "created": "2019-04-29", "title": "Long-term performance evaluation of an anoxic sulfur oxidizing moving bed biofilm reactor under nitrate limited conditions", "description": "An anoxic sulfur-oxidizing moving bed biofilm reactor (MBBR) treating sulfur and nitrate-contaminated synthetic wastewater was monitored for 306 days under feed nitrogen-to-sulfur (N/S) molar ratios of 0.5, 0.3 and 0.1.
", "keywords": ["Aurora Universities Network", "570", "Horizon 2020", "EC", "Environmental Engineering", "218 Environmental engineering", "116 Chemical sciences", "H2020", "116", "6. Clean water", "218", "European Joint Doctorates", "11. Sustainability", "European Commission", "Knowmad Institut", "Netherlands", "Water Science and Technology"]}, "links": [{"href": "http://pubs.rsc.org/en/content/articlepdf/2019/EW/C9EW00220K"}, {"href": "https://doi.org/10.1039/c9ew00220k"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%3A%20Water%20Research%20%26amp%3B%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1039/c9ew00220k", "name": "item", "description": "10.1039/c9ew00220k", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1039/c9ew00220k"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-01-01T00:00:00Z"}}, {"id": "10.1016/j.biocontrol.2022.104890", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-06-23T16:16:16Z", "type": "Journal Article", "created": "2022-03-14", "title": "Exploring microbiomes for plant disease management", "description": "Microbiome science is revolutionizing many concepts of plant biology, ecology, and evolution. Understanding plant microbiomes is key to developing solutions that protect crop health without impacting the environment. In this perspective article, we highlight the importance of both the structure and functions of plant-associated microbial communities in protecting their host from pathogens. These new findings have a high potential to aid biocontrol programs and to replace traditional chemical products, guiding the transition towards a sustainable production.", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "ddc:570", "15. Life on land", "Institut f\u00fcr Biochemie und Biologie"]}, "links": [{"href": "https://doi.org/10.1016/j.biocontrol.2022.104890"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biological%20Control", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biocontrol.2022.104890", "name": "item", "description": "10.1016/j.biocontrol.2022.104890", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biocontrol.2022.104890"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-06-01T00:00:00Z"}}, {"id": "10.1016/j.foreco.2010.09.007", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:16:49Z", "type": "Journal Article", "created": "2010-10-10", "title": "Organic Residue Mass At Planting Is An Excellent Predictor Of Tree Growth In Eucalyptus Plantations Established On A Sandy Tropical Soil", "description": "Abstract Tropical plantation forests are meeting an increasing proportion of global wood demand and comprehensive studies assessing the impact of silvicultural practices on tree and soil functioning are required to achieve sustainable yields. The objectives of our study were: (1) to quantify the effects of contrasting organic residue (OR) retention methods on tree growth and soil nutrient pools over a full Eucalyptus rotation and (2) to assess the potential of soil analyses to predict yields of fast-growing plantations established on tropical sandy soils. An experiment was set up in the Congo at the harvesting of the first rotation after afforestation of a native herbaceous savanna. Six treatments were set up in 0.26\u00a0ha plots and replicated in 4 blocks, with OR mass at planting ranging from 0 to 46.5\u00a0Mg\u00a0ha \u22121 . Tree growth over the whole rotation was highly dependent on OR management at planting. Over-bark trunk volume 7 years after planting ranged from 96\u00a0m 3 \u00a0ha \u22121 in the treatment with forest floor and harvest residue removal at planting to 164\u00a0m 3 \u00a0ha \u22121 in the treatment with the largest amount of OR. A comparison of nutrient stocks within the ecosystem at planting and at the end of the rotation suggested that nutrient contents in OR were largely involved in the different response observed between treatments. OR management treatments did not significantly modify most of the nutrient concentrations in the upper layers of the mineral soil. Conventional soil analyses performed before planting and at ages 1 and 3 years were unable to detect differences between treatments despite large differences in tree growth. In contrast, linear regressions between stand aboveground biomass at harvesting and OR mass at planting (independent variable) showed that OR mass was an excellent predictor of stand yield ( R 2 \u00a0=\u00a00.99). A large share of soil fertility comes from organic material above the mineral soil in highly weathered sandy soils and OR mass at planting might be used in conjunction with soil analyses to assess the potential of these soils to support forest plantations.", "keywords": ["0106 biological sciences", "570", "http://aims.fao.org/aos/agrovoc/c_7170", "[SDV]Life Sciences [q-bio]", "rendement des cultures", "Slash", "F62 - Physiologie v\u00e9g\u00e9tale - Croissance et d\u00e9veloppement", "for\u00eat tropicale", "01 natural sciences", "630", "http://aims.fao.org/aos/agrovoc/c_10176", "http://aims.fao.org/aos/agrovoc/c_24904", "sol tropical", "http://aims.fao.org/aos/agrovoc/c_16118", "http://aims.fao.org/aos/agrovoc/c_5387", "2. Zero hunger", "Eucalyptus", "substance nutritive", "r\u00e9sidu de r\u00e9colte", "P35 - Fertilit\u00e9 du sol", "http://aims.fao.org/aos/agrovoc/c_1811", "15. Life on land", "croissance", "Carbon", "sol sableux", "K10 - Production foresti\u00e8re", "[SDV] Life Sciences [q-bio]", "fertilit\u00e9 du sol", "Residue", "Fertility", "http://aims.fao.org/aos/agrovoc/c_3394", "Indicator", "http://aims.fao.org/aos/agrovoc/c_7978", "mati\u00e8re organique", "Organic matter", "plantations", "http://aims.fao.org/aos/agrovoc/c_5274", "http://aims.fao.org/aos/agrovoc/c_6781", "http://aims.fao.org/aos/agrovoc/c_5990", "Nutrient", "http://aims.fao.org/aos/agrovoc/c_2683"]}, "links": [{"href": "https://doi.org/10.1016/j.foreco.2010.09.007"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Forest%20Ecology%20and%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.foreco.2010.09.007", "name": "item", "description": "10.1016/j.foreco.2010.09.007", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.foreco.2010.09.007"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-12-01T00:00:00Z"}}, {"id": "oai:pub.uni-bielefeld.de:2986762", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:35:07Z", "type": "Report", "title": "Insights into Adaptations of Biogas-Producing Microbial Communities from Taxonomic Profiling, Metagenomically Assembled Genomes and Analysis of the Methanogenic Isolate Methanothermobacter wolfeii SIV6", "description": "Biogas is an important renewable energy source in Germany. However, in the course of the German energy transition and for political and economic reasons, biogas plants must become more flexible with regard to varying residue-based substrates and thus changing process conditions, while ensuring a stable and efficient process. To meet these requirements, a deeper understanding of the complex biogas-producing microbial communities and the role of community members in the anaerobic digestion (AD) process is necessary, under consideration of the prevailing process conditions. Therefore, the aim of this thesis was to comprehensively analyse biogas-producing microbial communities with regard to their adaptations to the process conditions in differently operated large-scale agricultural digesters. For this purpose, three different approaches were applied to unravel certain types of adaptations of the microbial communities within biogas plants.Little is known about how basic soil properties respond to contrasting grazing intensities in the Karoo biome, South Africa. The aim of this study was to investigate impacts of long\uffe2\uff80\uff90term (>75 years) grazing at 1.18 heads ha\uffe2\uff88\uff921 (heavy; CGH), 0.78 heads ha\uffe2\uff88\uff921 (light; CGL), and exclosure on selected soil properties. Soil samples were collected to a depth of 60 cm from the long\uffe2\uff80\uff90term experimental site of Grootfontein Agricultural Development Institute, Eastern Cape. The samples were analyzed for C, N, bulk density and infiltration rate, among others.
RESULTSGenerally, heavy and light grazing reduced soil N storage by 27.5% and 22.6%, respectively, compared with the exclosure. Animal exclusion improved water infiltration rate and C stocks significantly (P < 0.05), which was 0.128, 0.097, and 0.093 Mg ha\uffe2\uff88\uff921 yr\uffe2\uff88\uff921 for exclosure, CGL and CGH, respectively. Soil penetration resistance was higher for grazing treatments in the top 3\uffe2\uff80\uff937 cm soil layer but for exclosure at the top 1 cm soil surface.
CONCLUSIONAlthough livestock exclusion has the potential to improve C sequestration, a sufficient resting period for 1\uffe2\uff80\uff932 years followed by three consecutive grazing years at light stocking rate would be ideal for sustainable livestock production in this arid region of South Africa. \uffc2\uffa9 2015 Society of Chemical Industry
", "keywords": ["570", "Livestock", "Time Factors", "Nitrogen", "[SDV]Life Sciences [q-bio]", "continuous grazing", "01 natural sciences", "630", "nitrogen", "Soil", "South Africa", "arid lands", "Animals", "exclosure", "Ecosystem", "0105 earth and related environmental sciences", "2. Zero hunger", "carbon", "Feeding Behavior", "04 agricultural and veterinary sciences", "Plants", "15. Life on land", "Carbon", "6. Clean water", "[SDV] Life Sciences [q-bio]", "soil properties", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://doi.org/10.1002/jsfa.7302"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20the%20Science%20of%20Food%20and%20Agriculture", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/jsfa.7302", "name": "item", "description": "10.1002/jsfa.7302", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/jsfa.7302"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-07-03T00:00:00Z"}}, {"id": "10.1007/s13225-024-00533-y", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:15:48Z", "type": "Journal Article", "created": "2024-02-26", "title": "Class-wide genomic tendency throughout specific extremes in black fungi", "description": "Open AccessPeer reviewed", "keywords": ["570", "Black Fungi", "Plant Biology", "Mycology & Parasitology", "Evolutionary biology", "Microbiology", "Genetics", "Black fungi \u00b7 Stress resistance \u00b7 Comparative genomics \u00b7 Extreme environments", "14. Life underwater", "Plant biology", "2. Zero hunger", "Evolutionary Biology", "Black fungi", "Comparative genomics", "Human Genome", "500", "Extreme environments", "Biological Sciences", "15. Life on land", "3. Good health", "Health Disparities", "13. Climate action", "8. Economic growth", "Stress resistance", "Settore BIO/19 - MICROBIOLOGIA GENERALE", "Biotechnology"]}, "links": [{"href": "https://iris.unitn.it/bitstream/11572/450837/1/FUDI_Coleine%20et%20al%20v2..pdf"}, {"href": "https://iris.unitn.it/bitstream/11572/450837/3/s13225-024-00533-y.pdf"}, {"href": "https://escholarship.org/content/qt86f967px/qt86f967px.pdf"}, {"href": "https://doi.org/10.1007/s13225-024-00533-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Fungal%20Diversity", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s13225-024-00533-y", "name": "item", "description": "10.1007/s13225-024-00533-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s13225-024-00533-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-02-26T00:00:00Z"}}, {"id": "10.1007/s13593-014-0215-8", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:15:49Z", "type": "Journal Article", "created": "2014-04-07", "title": "Fourteen Years Of Evidence For Positive Effects Of Conservation Agriculture And Organic Farming On Soil Life", "description": "Conventional agriculture strongly alters soil quality due to industrial practices that often have negative effects on soil life. Alternative systems such as conservation agriculture and organic farming could restore better conditions for soil organisms. Improving soil life should in turn improve soil quality and farming sustainability. Here, we have compared for the first time the long-term effects of conservation agriculture, organic farming, and conventional agriculture on major soil organisms such as microbes, nematofauna, and macrofauna. We have also analyzed functional groups. Soils were sampled at the 14-year-old experimental site of La Cage, near Versailles, France. The microbial community was analyzed using molecular biology techniques. Nematofauna and macrofauna were analyzed and classified into functional groups. Our results show that both conservation and organic systems increased the abundance and biomass of all soil organisms, except predaceous nematodes. For example, macrofauna increased from 100 to 2,500 %, nematodes from 100 to 700 %, and microorganisms from 30 to 70 %. Conservation agriculture showed a higher overall improvement than organic farming. Conservation agriculture increased the number of many organisms such as bacteria, fungi, anecic earthworms, and phytophagous and rhizophagous arthropods. Organic farming improved mainly the bacterial pathway of the soil food web and endogeic and anecic earthworms. Overall, our study shows that long-term, no-tillage, and cover crops are better for soil biota than periodic legume green manures, pesticides, and mineral fertilizers.", "keywords": ["570", "biodiversit\u00e9 du sol", "[SDV]Life Sciences [q-bio]", "630", "Soil quality", "n\u00e9matofaune", "microorganisme du sol", "agriculture biologique", "Soil food web", "Land management", "11. Sustainability", "Agricultural sustainability", "Soil biodiversity;Functional groups;Soil food web;Soil functionning;Soil quality;Land management;Agricultural sustainability;Agroecosystems;Agroecology", "Agroecosystems", "Soil functioning", "2. Zero hunger", "communaut\u00e9 microbienne", "Soil functionning", "agriculture conventionnelle", "04 agricultural and veterinary sciences", "Agro\u00e9cologie", "15. Life on land", "Soil biodiversity", "6. Clean water", "[SDV] Life Sciences [q-bio]", "13. Climate action", "Functional groups", "agriculture de conservation", "0401 agriculture", " forestry", " and fisheries", "Agroecology"]}, "links": [{"href": "https://doi.org/10.1007/s13593-014-0215-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy%20for%20Sustainable%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s13593-014-0215-8", "name": "item", "description": "10.1007/s13593-014-0215-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s13593-014-0215-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-04-08T00:00:00Z"}}, {"id": "10.1002/cbic.202000051", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:14:33Z", "type": "Journal Article", "created": "2020-01-31", "title": "An Engineered E.\u2005coli Strain for Direct in Vivo Fluorination", "description": "AbstractSelectively fluorinated compounds are found frequently in pharmaceutical and agrochemical products where currently 25\uffe2\uff80\uff9330\uffe2\uff80\uff89% of optimised compounds emerge from development containing at least one fluorine atom. There are many methods for the site\uffe2\uff80\uff90specific introduction of fluorine, but all are chemical and they often use environmentally challenging reagents. Biochemical processes for C\uffe2\uff88\uff92F bond formation are attractive, but they are extremely rare. In this work, the fluorinase enzyme, originally identified from the actinomycete bacterium Streptomyces cattleya, is engineered into Escherichia coli in such a manner that the organism is able to produce 5\uffe2\uff80\uffb2\uffe2\uff80\uff90fluorodeoxyadenosine (5\uffe2\uff80\uffb2\uffe2\uff80\uff90FDA) from S\uffe2\uff80\uff90adenosyl\uffe2\uff80\uff90l\uffe2\uff80\uff90methionine (SAM) and fluoride in live E.\uffe2\uff80\uff85coli cells. Success required the introduction of a SAM transporter and deletion of the endogenous fluoride efflux capacity in order to generate an E.\uffe2\uff80\uff85coli host that has the potential for future engineering of more elaborate fluorometabolites.
", "keywords": ["SAM transporters", "0301 basic medicine", "570", "S-Adenosylmethionine", "0303 health sciences", "Deoxyadenosines", "Halogenation", "DAS", "Fluorine", "Halogenations", "540", "QD Chemistry", "Streptomyces", "3. Good health", "03 medical and health sciences", "Bacterial Proteins", "Isomerism", "Escherichia coli", "QD", "Fluoride channels", "Genetic Engineering", "Oxidoreductases", "Fluorinases"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/cbic.202000051"}, {"href": "https://doi.org/10.1002/cbic.202000051"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/ChemBioChem", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/cbic.202000051", "name": "item", "description": "10.1002/cbic.202000051", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/cbic.202000051"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-03-03T00:00:00Z"}}, {"id": "10.1002/ece3.1867", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:14:34Z", "type": "Journal Article", "created": "2016-01-11", "title": "Grazing Exclusion Reduced Soil Respiration But Increased Its Temperature Sensitivity In A Meadow Grassland On The Tibetan Plateau", "description": "AbstractUnderstanding anthropogenic influences on soil respiration (Rs) is critical for accurate predictions of soil carbon fluxes, but it is not known how Rs responds to grazing exclusion (GE). Here, we conducted a manipulative experiment in a meadow grassland on the Tibetan Plateau to investigate the effects of GE on Rs. The exclusion of livestock significantly increased soil moisture and above\uffe2\uff80\uff90ground biomass, but it decreased soil temperature, microbial biomass carbon (MBC), and Rs. Regression analysis indicated that the effects of GE on Rs were mainly due to changes in soil temperature, soil moisture, and MBC. Compared with the grazed blocks, GE significantly decreased soil carbon release by 23.6% over the growing season and 21.4% annually, but it increased the temperature sensitivity (Q10) of Rs by 6.5% and 14.2% for the growing season and annually respectively. Therefore, GE may reduce the release of soil carbon from the Tibetan Plateau, but under future climate warming scenarios, the increases in Q10 induced by GE could lead to increased carbon emissions.
", "keywords": ["570", "MICROBIAL RESPIRATION", "Environmental Sciences & Ecology", "Plant Productivity", "Temperature Sensitivity", "ALPINE GRASSLAND", "630", "Microbial Biomass Carbon", "NORTHERN CHINA", "SEASONAL PATTERNS", "MOUNTAIN GRASSLANDS", "Grazing Exclusion", "Tibetan Plateau", "PLANT-COMMUNITIES", "Original Research", "2. Zero hunger", "Science & Technology", "CLIMATE-CHANGE", "CO2 EFFLUX", "Ecology", "04 agricultural and veterinary sciences", "15. Life on land", "INNER-MONGOLIA", "BELOW-GROUND BIOMASS", "Soil Respiration", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Life Sciences & Biomedicine"]}, "links": [{"href": "https://doi.org/10.1002/ece3.1867"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.1867", "name": "item", "description": "10.1002/ece3.1867", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.1867"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-01-11T00:00:00Z"}}, {"id": "10.1002/ece3.6547", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:14:35Z", "type": "Journal Article", "created": "2020-07-09", "title": "The distribution of herbivores between leaves matches their performance only in the absence of competitors", "description": "AbstractFew studies have tested how plant quality and the presence of competitors interact in determining how herbivores choose between different leaves within a plant. We investigated this in two herbivorous spider mites sharing tomato plants: Tetranychus urticae, which generally induces plant defenses, and Tetranychus evansi, which suppresses them, creating asymmetrical effects on coinfesting competitors. On uninfested plants, both herbivore species preferred young leaves, coinciding with increased mite performance. On plants with heterospecifics, the mites did not prefer leaves on which they had a better performance. In particular, T.\uffc2\uffa0urticae avoided leaves infested with T.\uffc2\uffa0evansi, which is in agreement with T.\uffc2\uffa0urticae being outcompeted by T.\uffc2\uffa0evansi. In contrast, T.\uffc2\uffa0evansi did not avoid leaves with the other species, but distributed itself evenly over plants infested with heterospecifics. We hypothesize that this behavior of T.\uffc2\uffa0evansi may prevent further spread of T.\uffc2\uffa0urticae over the shared plant. Our results indicate that leaf age determines within\uffe2\uff80\uff90plant distribution of herbivores only in absence of competitors. Moreover, they show that this distribution depends on the order of arrival of competitors and on their effects on each other, with herbivores showing differences in behavior within the plant as a possible response to the outcome of those interactions.The study of different natural carbon sinks has become especially important because of climate change effects. The restoration of contaminated areas can be an ideal strategy for carbon sequestration. The studied area was affected by toxic Aznalc\uffc3\uffb3llar mine spill in 1998. Restoration process of the contaminated area was based, mainly, on the use of two organic amendments: leonardite (LE) and biosolid compost (BC). The objective of this study was to verify whether the application of these amendments promotes the long\uffe2\uff80\uff90term carbon sequestration in this soil. Five treatments were established: untreated control, biosolid compost (doses 4 and 2) and leonardite (doses 4 and 2). The addition of amendments implied an improvement in soil quality that was directly related to the amendment dose: decrease in bulk density, increase in pH, higher respiration rates and an improvement in the stratification ratio. Dose\uffe2\uff80\uff90dependent changes in the molecular composition of soil organic matter were shown by nuclear magnetic resonance analysis. Both amendments promoted carbon retention, although because of the low mineralization rates of soil organic matter in LE treatments, the carbon storage was higher. The dosage effect on the carbon balance was more important in LE treatments, whereas in the BC treatments, the balance was similar for both doses. Our findings suggest that LE4 significantly increased the total organic carbon and it was the most suitable treatment for long\uffe2\uff80\uff90term carbon storage, because of its molecular composition rich in relatively stable aromatic and lignin\uffe2\uff80\uff90derived compounds. Copyright \uffc2\uffa9 2015 John Wiley & Sons, Ltd.
", "keywords": ["2. Zero hunger", "570", "trace element contaminated soil", "13C NMR", "[SDV]Life Sciences [q-bio]", "Trace element contaminated soil", "leonardite", "04 agricultural and veterinary sciences", "15. Life on land", "Biosolid compost", "6. Clean water", "[SDV] Life Sciences [q-bio]", "13. Climate action", "biosolid compost", "C sequestration", "0401 agriculture", " forestry", " and fisheries", "C-13 NMR", "Leonardite"]}, "links": [{"href": "https://doi.org/10.1002/ldr.2466"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Land%20Degradation%20%26amp%3B%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ldr.2466", "name": "item", "description": "10.1002/ldr.2466", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ldr.2466"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-12-29T00:00:00Z"}}, {"id": "10.1002/ldr.3136", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:14:41Z", "type": "Journal Article", "created": "2018-08-18", "title": "Agroforestry systems: Meta-analysis of soil carbon stocks, sequestration processes, and future potentials", "description": "AbstractAgroforestry (AF) has the potential to restore degraded lands, provide a broader range of ecosystem goods and services such as carbon (C) sequestration and high biodiversity, and increase soil fertility and ecosystem stability through additional C input from trees, erosion prevention, and microclimate improvement. Advantages and processes for global C sequestration in AF are unknown. We used a meta\uffe2\uff80\uff90analysis of 427 soil C stock data pairs grouped into four main AF systems\uffe2\uff80\uff94alley cropping, windbreaks, silvopastures, and homegardens\uffe2\uff80\uff94and evaluated changes in AF and adjacent control cropland or pasture. Mean soil C stocks in AF (1\uffe2\uff80\uff90m depth) were 126\uffc2\uffa0Mg\uffc2\uffa0C\uffc2\uffb7ha\uffe2\uff88\uff921, which is 19% more than that in cropland or pasture. The highest C stocks in soil were in subtropical homegardens, AF with younger trees, and topsoil (0\uffe2\uff80\uff9320\uffc2\uffa0cm). Increased soil C stocks in AF were lower than aboveground C stocks in most AF systems, except alley cropping. Homegardens stored the highest C in both aboveground and belowground, especially in the subsoil (20\uffe2\uff80\uff93100\uffc2\uffa0cm). Advantages of AF ecosystem services focusing on mechanisms of belowground C sequestration were analyzed. AF could store 5.3\uffc2\uffa0\uffc3\uff97\uffc2\uffa0109\uffc2\uffa0Mg additional C in soil on 944\uffc2\uffa0Mha globally, with most in the tropics and subtropics. AF systems could greatly contribute to global soil C sequestration if used in larger areas. Future investigations of AF should include (a) mechanistic\uffe2\uff80\uff90 and process\uffe2\uff80\uff90based studies (instead of common monitoring and inventories), (b) models linking forest and crop growth with soil water and C and nutrient cycling, and (c) accurate assessments of the AF area worldwide based on the remote sensing approaches.
", "keywords": ["meta-analysis", "2. Zero hunger", "570", "550", "13. Climate action", "sustainable land use", "homegardens", "0401 agriculture", " forestry", " and fisheries", "agroforestry management", "04 agricultural and veterinary sciences", "15. Life on land", "ecosystem services", "carbon sequestration"]}, "links": [{"href": "https://doi.org/10.1002/ldr.3136"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Land%20Degradation%20%26amp%3B%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ldr.3136", "name": "item", "description": "10.1002/ldr.3136", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ldr.3136"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-09-04T00:00:00Z"}}, {"id": "10.1002/sae2.12006", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:14:44Z", "type": "Journal Article", "created": "2021-11-15", "title": "Effects of microplastics on crop nutrition in fertile soils and interaction with arbuscular mycorrhizal fungi", "description": "AbstractIntroductionSoil microplastic (MP) pollution has emerged as a main factor of global change, but its effects on soil nutrient availability and uptake by crops (macro and micronutrients) are largely unknown. Arbuscular mycorrhizal fungi (AMF) are regulators of nutrient availability and uptake and can interact with soil MP.
Materials and MethodsBuilding on previous studies, here we explored in a 50\uffe2\uff80\uff90days pot experiment the influence and interaction of MP fibres (0.4%) and commercial AMF in soil and onion chemistry, that is, in elemental composition of onion shoots and soils (C, N, Ca, Mg, K, P, S, Cu, Fe, Mn and Zn) and micronutrient soil availability (Cu, Fe, Mn and Zn).
ResultsMP had detrimental effects on K, Mg and S, but increased the soil availability of Zn and shoot uptake. AMF inoculation buffered the effects of MP by balancing/enhancing nutrient availability and plant uptake. Particularly, the commercial AMF inoculum remarkably enhanced Mn uptake by onion.
ConclusionOur results support the use of AMF to sustainably manage agricultural ecosystems contaminated with MP, buffering and counteracting the effects of MP by balancing nutrient availability and plant uptake.
", "keywords": ["2. Zero hunger", "570", "microplastics", "Agriculture (General)", "Microplastics", "macronutrients", "Qu\u00edmica", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water", "S1-972", "soil", "Environmental sciences", "Soil", "13. Climate action", "micronutrients", "0401 agriculture", " forestry", " and fisheries", "GE1-350", "Macronutrients", "Micronutrients", "Onion", "onion"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/sae2.12006"}, {"href": "https://doi.org/10.1002/sae2.12006"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Sustainable%20Agriculture%20and%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/sae2.12006", "name": "item", "description": "10.1002/sae2.12006", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/sae2.12006"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-11-15T00:00:00Z"}}, {"id": "10.1002/sae2.12031", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:14:44Z", "type": "Journal Article", "created": "2022-11-12", "title": "Frontiers in soil ecology\u2014Insights from the World Biodiversity Forum 2022", "description": "AbstractGlobal change is affecting soil biodiversity and functioning across all terrestrial ecosystems. Still, much is unknown about how soil biodiversity and function will change in the future in response to simultaneous alterations in climate and land use, as well as other environmental drivers. It is crucial to understand the direct, indirect\uffc2\uffa0and interactive effects of global change drivers on soil communities and ecosystems across environmental contexts, not only today but also in the near future. This is particularly relevant for international efforts to tackle climate change like the Paris Agreement, and considering the failure to achieve the 2020 biodiversity targets, especially the target of halting soil degradation. Here, we outline the main frontiers related to soil ecology that were presented and discussed at the thematic sessions of the World Biodiversity Forum 2022 in Davos, Switzerland. We highlight multiple frontiers of knowledge associated with data integration, causal inference, soil biodiversity and function scenarios, critical soil biodiversity facets, underrepresented drivers, global collaboration, knowledge application and transdisciplinarity, as well as policy and public communication. These identified research priorities are not only of immediate interest to the scientific community but may also be considered in research priority programmes and calls for funding.Rangeland-based livestock production constitutes a primary source of livelihood for many inhabitants of dryland regions. Their subsistence relies heavily on maintaining the productivity, biodiversity and services of these ecosystems. Harsh environmental conditions (e.g., drought) combined with land use intensification (e.g., overgrazing) make dryland ecosystems vulnerable and prone to degradation. However, the interplay between livestock grazing intensity and aridity conditions in driving the conservation and nutritional value of forage in arid and semi-arid rangelands is still not fully understood. In this study, we performed structural equation models (SEM) to assess the simultaneous direct and indirect effects of livestock grazing intensity and aridity level on community structure, diversity, biomass, forage production, forage C:N ratio and forage fiber composition in two semi-arid Mediterranean rangelands, NE Spain. Not surprisingly, we found that higher livestock grazing intensity led to lower community plant cover, especially when combined with higher aridity. However, both increasing grazing intensity and aridity were associated with higher forage production after one year of grazing exclusion. We did not find any adverse effect of livestock grazing on plant diversity, although plant species composition differed among grazing intensity levels. On the other hand, we found an aridity-driven trade-off in regard of the nutritional value of forage. Specifically, higher aridity was associated with a decrease in the least digestible fiber fraction (i.e., lignin) and an increase in forage C:N ratio. More interestingly, we found that livestock grazing modulated this trade-off by improving the overall forage nutritional value. Altogether, our results provide further insights into the management of semi-arid Mediterranean rangelands, pointing out that maintaining traditional rangeland-based livestock production may be a sustainable option as long as rangeland conservation (e.g., community plant cover) is not severely compromised. 50\u00a0 \u03bc m. By contrast, total topsoil N did not differ significantly at these sites. In old plantations affected by fire, total topsoil C content did not differ significantly from that in savanna, but total topsoil N was 26 % lower in plantations than in savanna ( p = 0.0063 ), on average, and the decrease affected fractions 200\u00a0 \u03bc m especially. Whatever the fire occurrence, total topsoil C/N was higher in old plantations than in savanna, in fractions > 20\u00a0 \u03bc m especially.", "keywords": ["[SDV.SA.SF]Life Sciences [q-bio]/Agricultural sciences/Silviculture", "http://aims.fao.org/aos/agrovoc/c_7190", "SAVANNA", "SOIL ORGANIC MATTER", "FIRE", "analyse de sol", "FLUX ET STOCKS C", "http://aims.fao.org/aos/agrovoc/c_35657", "azote", "2. Zero hunger", "Eucalyptus", "FRACTIONATION", "fraction du sol", "forestry", "FIRE", "04 agricultural and veterinary sciences", "eucalyptus", "META ANALYSIS", "TURNOVER", "[SDV.SA.SF] Life Sciences [q-bio]/Agricultural sciences/Silviculture", " forestry", "plantations", "particle size fractionation", "http://aims.fao.org/aos/agrovoc/c_5990", "fire", "mati\u00e8re organique du sol", "http://aims.fao.org/aos/agrovoc/c_2683", "P33 - Chimie et physique du sol", "570", "PARTICLE-SIZE FRACTIONATION", "http://aims.fao.org/aos/agrovoc/c_24420", "MATTER DYNAMICS", "http://aims.fao.org/aos/agrovoc/c_5192", "TROPICAL SOILS", "LITTER DECOMPOSITION", "soil organic matter", "MANAGEMENT", "EUCALYPTUS", "savane", "http://aims.fao.org/aos/agrovoc/c_1301", "PINUS", "CHANGEMENT D'USAGE DES TERRES", "CARBON DYNAMICS", "http://aims.fao.org/aos/agrovoc/c_1811", "15. Life on land", "savanna", "K10 - Production foresti\u00e8re", "AFFORESTATION", "http://aims.fao.org/aos/agrovoc/c_6825", "0401 agriculture", " forestry", " and fisheries", "carbone", "impact sur l'environnement", "http://aims.fao.org/aos/agrovoc/c_7198"]}, "links": [{"href": "https://doi.org/10.1016/j.foreco.2007.10.027"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Forest%20Ecology%20and%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.foreco.2007.10.027", "name": "item", "description": "10.1016/j.foreco.2007.10.027", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.foreco.2007.10.027"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-03-01T00:00:00Z"}}, {"id": "10.1007/s004680000062", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-06-23T16:15:08Z", "type": "Journal Article", "created": "2003-02-20", "title": "Biomass Allocation, Needle Structural Characteristics And Nutrient Composition In Scots Pine Seedlings Exposed To Elevated Co2 And O-3 Concentrations", "description": "Three-year-old Scots pine (Pinus sylvestris L.) seedlings were exposed to ambient or elevated ozone (O 3 ) (1.5\u00d7 ambient) and carbon dioxide (CO 2 ) (590 \u00b5mol mol -1 ) concentrations during two growing seasons in open-top field chambers (OTCs). Five different treat- ments were applied in the chambers: filtered air, ambient air, elevated O3, elevated CO2, and elevated O3 and CO2 combined. Ambient plots outside the OTCs were also in- cluded, but the chamber ambient was used as a control in O3 and CO2 treatments due to a significant chamber ef- fect. Increases in yellowing and chlorotic mottling of previous-year (C+1) needles and in the amount of cyto- plasmic ribosomes and electron density of the chloro- plast stroma in current-year (C) and C+1 needle meso- phyll cells were observed in elevated O 3 at both CO 2 concentrations. Elevated O3 alone caused a non-signifi- cant 10.9% decrease in plant total dry mass and a signifi- cant decrease in manganese (Mn) content of C needles. CO2 enrichment caused a significant increase in needle cross-sectional width after the first year of exposure, and an accumulation of starch and slight curling and swelling of the chloroplast thylakoids in the mesophyll tissue of C needles after the second year of exposure. Calcium and Mn contents were increased and copper and nitrogen contents were decreased, significantly, in CO 2-exposed needles. A non-significant 19.1% increase in plant total dry mass was measured in elevated CO 2 alone, whereas a 14.8% reduction in total dry mass, together with a signif- icant reduction in current-year main shoot length, was found in the combined treatment. Overall, in spite of de- creases in O3-induced visible injuries by CO 2, elevated CO 2 levels were not able to counteract the impact of O 3 in this experiment.", "keywords": ["hiilidioksidi", "0106 biological sciences", "570", "m\u00e4nty", "neulasrakenne", "kasvu", "otsoni", "01 natural sciences"], "contacts": [{"organization": "Utriainen, J., Janhunen, S., Helmisaari, H.-S., Holopainen, T.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s004680000062"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Trees", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s004680000062", "name": "item", "description": "10.1007/s004680000062", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s004680000062"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2000-08-01T00:00:00Z"}}, {"id": "10.1007/s00572-015-0655-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:15:08Z", "type": "Journal Article", "created": "2015-07-25", "title": "The Ectomycorrhizal Community Of Conifer Stands On Peat Soils 12 Years After Fertilization With Wood Ash", "description": "We studied long-term effects of fertilization with wood ash on biomass, vitality and mycorrhizal colonization of fine roots in three conifer forest stands growing in Vacciniosa turf. mel. (V), Myrtillosa turf. mel. (M) and Myrtillosa turf. mel./Caricoso-phragmitosa (MC) forest types on peat soils. Fertilization trials amounting 5 kg/m(2) of wood ash were established 12 years prior to this study. A total of 63 soil samples with roots were collected and analysed. Ectomycorrhizal (ECM) fungi in roots were identified by morphotyping and sequencing of the fungal internal transcribed spacer (ITS) region. In all forest types, fine root biomass was higher in fertilized plots than in control plots. In M forest type, proportion of living fine roots was greater in fertilized plots than in control plots, while in V and MC, the result was opposite. Fifty ECM species were identified, of which eight were common to both fertilized and control plots. Species richness and Shannon diversity index were generally higher in fertilized plots than in control plots. The most common species in fertilized plots were Amphinema byssoides (17.8%) and Tuber cf. anniae (12.2%), while in control plots, it was Tylospora asterophora (18.5%) and Lactarius tabidus (20.3%). Our results showed that forest fertilization with wood ash has long-lasting effect on diversity and composition of ECM fungal communities.", "keywords": ["0106 biological sciences", "570", "forest fertilization", "m\u00e4nty", "Molecular Sequence Data", "organic soils", "fine roots", "Plant Roots", "01 natural sciences", "630", "mets\u00e4nlannoitus", "Mycorrhizae", "ectomycorrhizae", "DNA", " Ribosomal Spacer", "Muut aihealueet", "DNA", " Fungal", "2. Zero hunger", "Picea abies", "Pinus sylvestris", "Sequence Analysis", " DNA", "04 agricultural and veterinary sciences", "15. Life on land", "Biota", "hienojuuret", "kuusi", "Tracheophyta", "eloper\u00e4iset maat", "0401 agriculture", " forestry", " and fisheries", "ektomykorritsa"]}, "links": [{"href": "https://doi.org/10.1007/s00572-015-0655-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Mycorrhiza", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00572-015-0655-2", "name": "item", "description": "10.1007/s00572-015-0655-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00572-015-0655-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-07-26T00:00:00Z"}}, {"id": "10.1016/j.fcr.2021.108182", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-23T16:16:44Z", "type": "Journal Article", "created": "2021-05-25", "title": "Global sensitivity analysis of crop yield and transpiration from the FAO-AquaCrop model for dryland environments", "description": "Open AccessPeer reviewed", "keywords": ["2. Zero hunger", "570", "Yield", "0208 environmental biotechnology", "0207 environmental engineering", "02 engineering and technology", "15. Life on land", "630", "AquaCrop", "6. Clean water", "Transpiration", "Dryland", "13. Climate action", "Sensitivity analysis"]}, "links": [{"href": "https://eprints.soton.ac.uk/449637/1/AquaCrop_GSA_rev2.pdf"}, {"href": "https://eprints.soton.ac.uk/449637/2/Lu2021_AquaCrop_GSA.pdf"}, {"href": "https://doi.org/10.1016/j.fcr.2021.108182"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Field%20Crops%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.fcr.2021.108182", "name": "item", "description": "10.1016/j.fcr.2021.108182", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.fcr.2021.108182"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-07-01T00:00:00Z"}}, {"id": "10.1007/s10021-010-9384-8", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-23T16:15:10Z", "type": "Journal Article", "created": "2010-09-29", "title": "Biotic And Abiotic Changes In Ecosystem Structure Over A Shrub-Encroachment Gradient In The Southwestern Usa", "description": "In this study, we investigate changes in ecosystem structure that occur over a gradient of land-degradation in the southwestern USA, where shrubs are encroaching into native grassland. We evaluate a conceptual model which posits that the development of biotic and abiotic structural connectivity is due to ecogeomorphic feedbacks. Three hypotheses are evaluated: 1. Over the shrub-encroachment gradient, the difference in soil properties under each surface-cover type will change non-linearly, becoming increasingly different; 2. There will be a reduction in vegetation cover and an increase in vegetation-patch size that is concurrent with an increase in the spatial heterogeneity of soil properties over the shrub-encroachment gradient; and 3. Over the shrub-encroachment gradient, the range at which soil properties are autocorrelated will progressively exceed the range at which vegetation is autocorrelated. Field-based monitoring of vegetation and soil properties was carried out over a shrub-encroachment gradient at the Sevilleta National Wildlife Refuge in New Mexico, USA. Results of this study show that vegetation cover decreases over the shrub-encroachment gradient, but vegetation-patch size increases, with a concurrent increase in the spatial heterogeneity of soil properties. Typically, there are significant differences in soil properties between non-vegetated and vegetated surfaces, but for grass and shrub patches, there are only significant differences for the biotic soil properties. Results suggest that it is the development of larger, well-connected, non-vegetated patches that is most important in driving the overall behavior of shrub-dominated sites. Results of this study support the hypothesis that feedbacks of functional connectivity reinforce the development of structural connectivity, which increases the resilience of the shrub-dominated state, and thus makes it harder for grasses to re-establish and reverse the vegetation change.", "keywords": ["2. Zero hunger", "0106 biological sciences", "570", "Ecohydrology", "Function - Land degradation.", "Structure", "910", "15. Life on land", "Grassland", "01 natural sciences", "Spatial autocorrelation", "Shrubland", "0105 earth and related environmental sciences"], "contacts": [{"organization": "Turnbull, Laura, Brazier, Richard E., Wainwright, John, Bol, Roland,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s10021-010-9384-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecosystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s10021-010-9384-8", "name": "item", "description": "10.1007/s10021-010-9384-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s10021-010-9384-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-09-30T00:00:00Z"}}, {"id": "10.1007/s10021-011-9491-1", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-06-23T16:15:11Z", "type": "Journal Article", "created": "2011-09-26", "title": "Regulation Of Microbial Community Composition And Activity By Soil Nutrient Availability, Soil Ph, And Herbivory In The Tundra", "description": "Soil nitrogen (N) availability and pH constitute major abiotic controls over microbial community composition and activity in tundra ecosystems. On the other hand, mammalian grazers form an important biotic factor influencing resource coupling between plants and soil microorganisms. To investigate individual effects and interactions among soil nutrients, pH, and grazing on tundra soils, we performed factorial treatments of fertilization, liming, and grazer exclusion in the field for 3\u00a0years at 2 contrasting tundra habitats, acidic (N-poor) and non-acidic (N-rich) tundra heaths. The effects of all treatments were small in the non-acidic tundra heaths. In the acidic tundra heaths, fertilization decreased the fungal:bacterial ratio as analyzed by soil PLFAs, but there were no effects of liming. Fertilization increased soil N concentrations more drastically in ungrazed than grazed plots, and in parallel, fertilization decreased the fungal:bacterial ratio to a greater extent in the ungrazed plots. Liming, on the other hand, partly negated the effects of fertilization on both soil N concentrations and PLFAs. Fertilization drastically increased the activity of phenol oxidase, a microbial enzyme synthesized for degradation of soil phenols, in grazed plots, but had no effect in ungrazed plots. Taken together, our results demonstrate that grazers have the potential to regulate the fungal:bacterial ratio in soils through influencing N availability for the soil microorganisms.", "keywords": ["2. Zero hunger", "0106 biological sciences", "0301 basic medicine", "570", "03 medical and health sciences", "tundra", "mikrobiaktiivisuus", "kasvinsy\u00f6j\u00e4t", "mikrobiyhteis\u00f6", "15. Life on land", "01 natural sciences"], "contacts": [{"organization": "Stark, S., Eskelinen, A., M\u00e4nnist\u00f6, M.K.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s10021-011-9491-1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecosystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s10021-011-9491-1", "name": "item", "description": "10.1007/s10021-011-9491-1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s10021-011-9491-1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-09-27T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=570&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=570&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=570&", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=570&offset=50", "hreflang": "en-US"}], "numberMatched": 720, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-06-23T22:40:33.556605Z"}