{"type": "FeatureCollection", "features": [{"id": "10.1155/2019/1751783", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:34Z", "type": "Journal Article", "created": "2019-05-02", "title": "Acetotrophic Activity Facilitates Methanogenesis from LCFA at Low Temperatures: Screening from Mesophilic Inocula", "description": "<p>The inoculum source plays a crucial role in the anaerobic treatment of wastewaters. Lipids are present in various wastewaters and have a high methanogenic potential, but their hydrolysis results in the production of long chain fatty acids (LCFAs) that are inhibitory to anaerobic microorganisms. Screening of inoculum for the anaerobic treatment of LCFA-containing wastewaters has been performed at mesophilic and thermophilic conditions. However, an evaluation of inocula for producing methane from LCFA-containing wastewater has not yet been conducted at low temperatures and needs to be undertaken. In this study, three inocula (one granular sludge and two municipal digester sludges) were assessed for methane production from LCFA-containing synthetic dairy wastewater (SDW) at low temperatures (10 and 20\uffc2\uffb0C). A methane yield (based on mL-CH4/g-CODadded) of 86-65% with acetate and 45-20% with SDW was achieved within 10 days using unacclimated granular sludge, whereas the municipal digester sludges produced methane only at 20\uffc2\uffb0C but not at 10\uffc2\uffb0C even after 200 days of incubation. The acetotrophic activity in the inoculum was found to be crucial for methane production from LCFA at low temperatures, highlighting the role ofMethanosaeta(acetoclastic archaea) at low temperatures. The presence of bacterial taxa from the familySyntrophaceae(Syntrophusand uncultured taxa) in the inoculum was found to be important for methane production from SDW at 10\uffc2\uffb0C. This study suggests the evaluation of acetotrophic activity and the initial microbial community characteristics by high-throughput amplicon sequencing for selecting the inoculum for producing methane at low temperatures (up to 10\uffc2\uffb0C) from lipid-containing wastewaters.</p>", "keywords": ["Deltaproteobacteria", "0301 basic medicine", "570", "0303 health sciences", "Sewage", "218 Environmental engineering", "Microbiota", "116 Chemical sciences", "Fatty Acids", "Temperature", "116", "Acetates", "Methanosarcinales", "6. Clean water", "03 medical and health sciences", "218", "13. Climate action", "11. Sustainability", "Anaerobiosis", "Methane", "Research Article"]}, "links": [{"href": "https://doi.org/10.1155/2019/1751783"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Archaea", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1155/2019/1751783", "name": "item", "description": "10.1155/2019/1751783", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1155/2019/1751783"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-05-02T00:00:00Z"}}, {"id": "10.1371/journal.pone.0200979", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:50Z", "type": "Journal Article", "created": "2019-04-11", "title": "Quantitative and qualitative evaluation of the impact of the G2 enhancer, bead sizes and lysing tubes on the bacterial community composition during DNA extraction from recalcitrant soil core samples based on community sequencing and qPCR", "description": "Abstract<p>Soil DNA extraction encounters numerous challenges that can affect both yield and purity of the recovered DNA. Clay particles lead to reduced DNA extraction efficiency, and PCR inhibitors from the soil matrix can negatively affect downstream analyses when applying DNA sequencing. Further, these effects impede molecular analysis of bacterial community compositions in lower biomass samples, as often observed in deeper soil layers. Many studies avoid these complications by using indirect DNA extraction with prior separation of the cells from the matrix, but such methods introduce other biases that influence the resulting microbial community composition.</p><p>To address these issues, a direct DNA extraction method was applied in combination with the use of a commercial product, the G2 DNA/RNA Enhancer\uffc2\uffae, marketed as being capable of improving the amount of DNA recovered after the lysis step. The results showed that application of G2 increased DNA yields from the studied clayey soils from layers between 1.00 and 2.20 m below ground level.</p><p>Importantly, the use of G2 did not introduce bias, as it did not result in any significant differences in the biodiversity of the bacterial community measured in terms of alpha and beta diversity and taxonomical composition.</p><p>Finally, this study considered a set of customised lysing tubes for evaluating possible influences on the DNA yield. Tubes customization included different bead sizes and amounts, along with lysing tubes coming from two suppliers. Results showed that the lysing tubes with mixed beads allowed greater DNA recovery compared to the use of either 0.1 or 1.4 mm beads, irrespective of the tube supplier.</p><p>These outcomes may help to improve commercial products in DNA/RNA extraction kits, besides raising awareness about the optimal choice of additives, offering opportunities for acquiring a better understanding of topics such as vertical microbial characterisation and environmental DNA recovery in low biomass samples.</p>", "keywords": ["DNA", " Bacterial", "0301 basic medicine", "Science", "Microbial Consortia", "DIVERSITY", "SOFTWARE", "Real-Time Polymerase Chain Reaction", "BACILLUS-SUBTILIS", "BIOMASS", "03 medical and health sciences", "BIOAUGMENTATION", "DNA", " Bacterial/chemistry", "MICROBIAL COMMUNITIES", "Soil Microbiology", "2. Zero hunger", "0303 health sciences", "16S RIBOSOMAL-RNA", "Q", "R", "PROFILES", "ACIDS", "TRANSFORMATION", "6. Clean water", "Microbial Consortia/genetics", "Enhancer Elements", " Genetic", "13. Climate action", "Medicine", "Research Article"]}, "links": [{"href": "https://www.biorxiv.org/content/10.1101/365395v1.full.pdf"}, {"href": "https://doi.org/10.1371/journal.pone.0200979"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0200979", "name": "item", "description": "10.1371/journal.pone.0200979", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0200979"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-07-09T00:00:00Z"}}, {"id": "10.11588/riha.2022.2.92774", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:35Z", "type": "Report", "title": "0292 The Fate of the Antiquities Collection of Izabela Dzia\u0142y\u0144ska (ne\u00e9 Czartoryska)", "description": "Open AccessRIHA Journal, 2023: Special Issue 'The Fate of Antiquities in the Nazi Era'", "keywords": ["antiquities", "Fine Arts", "world war ii", "go\u0142uch\u00f3w collection", "greek vases", "war losses", "N", "16. Peace & justice", "occupied poland"], "contacts": [{"organization": "Inga G\u0142uszek, Micha\u0142 Krueger,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.11588/riha.2022.2.92774"}, {"rel": "self", "type": "application/geo+json", "title": "10.11588/riha.2022.2.92774", "name": "item", "description": "10.11588/riha.2022.2.92774", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.11588/riha.2022.2.92774"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-09-01T00:00:00Z"}}, {"id": "10.1371/journal.pone.0092517", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:48Z", "type": "Journal Article", "created": "2014-04-02", "title": "Ammonium as a Driving Force of Plant Diversity and Ecosystem Functioning: Observations Based on 5 Years' Manipulation of N Dose and Form in a Mediterranean Ecosystem", "description": "Enhanced nitrogen (N) availability is one of the main drivers of biodiversity loss and degradation of ecosystem functions. However, in very nutrient-poor ecosystems, enhanced N input can, in the short-term, promote diversity. Mediterranean Basin ecosystems are nutrient-limited biodiversity hotspots, but no information is available on their medium- or long-term responses to enhanced N input. Since 2007, we have been manipulating the form and dose of available N in a Mediterranean Basin maquis in south-western Europe that has low ambient N deposition (<4 kg N ha(-1) yr(-1)) and low soil N content (0.1%). N availability was modified by the addition of 40 kg N ha(-1) yr(-1) as a 1\u22361 NH4Cl to (NH4)2SO4 mixture, and 40 and 80 kg N ha(-1) yr(-1) as NH4NO3. Over the following 5 years, the impacts on plant composition and diversity (richness and evenness) and some ecosystem characteristics (soil extractable N and organic matter, aboveground biomass and % of bare soil) were assessed. Plant species richness increased with enhanced N input and was more related to ammonium than to nitrate. Exposure to 40 kg NH4+-N ha(-1) yr(-1) (alone and with nitrate) enhanced plant richness, but did not increase aboveground biomass; soil extractable N even increased under 80 kg NH4NO3-N ha(-1) yr(-1) and the % of bare soil increased under 40 kg NH4+-N ha(-1) yr(-1). The treatment containing less ammonium, 40 kg NH4NO3-N ha(-1) yr(-1), did not enhance plant diversity but promoted aboveground biomass and reduced the % of bare soil. Data suggest that enhanced NHy availability affects the structure of the maquis, which may promote soil erosion and N leakage, whereas enhanced NOx availability leads to biomass accumulation which may increase the fire risk. These observations are relevant for land use management in biodiverse and fragmented ecosystems such as the maquis, especially in conservation areas.", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Mediterranean Region", "Science", "Q", "R", "Aquatic Ecology", "Biodiversity", "Plants", "15. Life on land", "6. Clean water", "03 medical and health sciences", "Ammonia", "13. Climate action", "Medicine", "Plant Physiological Phenomena", "Research Article"]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0092517"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0092517", "name": "item", "description": "10.1371/journal.pone.0092517", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0092517"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-04-02T00:00:00Z"}}, {"id": "10.1163/187631286x00224", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:35Z", "type": "Journal Article", "created": "2010-07-03", "title": "The transfer of Orthocladius rusticus Goetghebuer to Chaetocladius with a redescription of the type (Diptera: Chironomidae)", "description": "Abstract<p>The holotype male of Orthocladius rusticus Goetghebuer is redescribed and the species is transferred to the genus Chaetocladius.</p>", "keywords": ["0106 biological sciences", "01 natural sciences"], "contacts": [{"organization": "Annelle R. Soponis", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1163/187631286x00224"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Insect%20Systematics%20%26amp%3B%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1163/187631286x00224", "name": "item", "description": "10.1163/187631286x00224", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1163/187631286x00224"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1986-01-01T00:00:00Z"}}, {"id": "10.1371/journal.pone.0101776", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:48Z", "type": "Journal Article", "created": "2014-07-03", "title": "Carbon, Nitrogen And Phosphorus Accumulation And Partitioning, And C:N:P Stoichiometry In Late-Season Rice Under Different Water And Nitrogen Managements", "description": "Water and nitrogen availability plays an important role in the biogeochemical cycles of essential elements, such as carbon (C), nitrogen (N) and phosphorus (P), in agricultural ecosystems. In this study, we investigated the seasonal changes of C, N and P concentrations, accumulation, partitioning, and C:N:P stoichiometric ratios in different plant tissues (root, stem-leaf, and panicle) of late-season rice under two irrigation regimes (continuous flooding, CF; alternate wetting and drying, AWD) and four N managements (control, N0; conventional urea at 240 kg N ha(-1), UREA; controlled-release bulk blending fertilizer at 240 kg N ha(-1), BBF; polymer-coated urea at 240 kg N ha(-1), PCU). We found that water and N treatments had remarkable effects on the measured parameters in different plant tissues after transplanting, but the water and N interactions had insignificant effects. Tissue C:N, N:P and C:P ratios ranged from 14.6 to 52.1, 3.1 to 7.8, and 76.9 to 254.3 over the rice growing seasons, respectively. The root and stem-leaf C:N:P and panicle C:N ratios showed overall uptrends with a peak at harvest whereas the panicle N:P and C:P ratios decreased from filling to harvest. The AWD treatment did not affect the concentrations and accumulation of tissue C and N, but greatly decreased those of P, resulting in enhanced N:P and C:P ratios. N fertilization significantly increased tissue N concentration, slightly enhanced tissue P concentration, but did not affect tissue C concentration, leading to a significant increase in tissue N:P ratio but a decrease in C:N and C:P ratios. Our results suggested that the growth of rice in the Taihu Lake region was co-limited by N and P. These findings broadened our understanding of the responses of plant C:N:P stoichiometry to simultaneous water and N managements in subtropical high-yielding rice systems.", "keywords": ["2. Zero hunger", "Plant Stems", "Nitrogen", "Science", "Q", "R", "Water", "Oryza", "Phosphorus", "04 agricultural and veterinary sciences", "15. Life on land", "Plant Roots", "Carbon", "6. Clean water", "Plant Leaves", "Medicine", "0401 agriculture", " forestry", " and fisheries", "Seasons", "Ecosystem", "Research Article"], "contacts": [{"organization": "Chunyan Zhu, Yushi Ye, Xinqiang Liang, Yuanjing Ji, Yingxu Chen, Li Liang,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0101776"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0101776", "name": "item", "description": "10.1371/journal.pone.0101776", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0101776"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-07-03T00:00:00Z"}}, {"id": "10.1163/18760104-20020007", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:35Z", "type": "Journal Article", "created": "2023-06-30", "title": "Nature-Based Solution to Man-Made Problems: Fostering the Uptake of Phytoremediation and Low-iluc Biofuels in the EU", "description": "Abstract <p>Soil contamination represents a major global environmental threat. Only in the European Union, around 340.000 contaminated sites are inventoried. At the same time, the need to foster the uptake of sustainable biofuels to curb greenhouse gas emissions from the transport sector is one of the pillars of the EU\uffe2\uff80\uff99s climate action to achieve the overarching goals set under the European Climate Law and the Renewable Energy Directive. Against this backdrop, nature-based solutions for soil remediation are increasingly being advocated as sustainable options to enhance soil biodiversity while addressing soil contamination in line with the UN Sustainable Development Goals and, in the EU, the European Green Deal and the EU Biodiversity Strategy for 2030. Among several nature-based soil remediation techniques, phytoremediation consists of the use of plants and their associated microbes to stabilise, degrade, volatilise and extract soil pollutants. Furthermore, the non-food biomass generated as a result of phytoremediation could provide a meaningful low Indirect Land Use Change (iluc) feedstock for the production of advanced biofuels to reduce climate change.</p> <p>This paper addresses the policy and legal background surrounding the uptake of phytoremediation and recovery of output materials focusing on existing roadblocks currently hampering the full-scale adoption of such a complex yet inherently circular value chain. The paper concludes that meaningful steps must yet be taken to properly embed nature-based soil remediation techniques, such as phytoremediation, in the current legal framework and to ensure social ownership of the same to maximise its environmental benefits.</p", "keywords": ["2. Zero hunger", "advanced biofuels", "soil pollution", "0211 other engineering and technologies", "phytoremediation", "02 engineering and technology", "15. Life on land", "soil strategy", "7. Clean energy", "01 natural sciences", "6. Clean water", "12. Responsible consumption", "13. Climate action", "11. Sustainability", "European Green Deal", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1163/18760104-20020007"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20for%20European%20Environmental%20%26amp%3B%20Planning%20Law", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1163/18760104-20020007", "name": "item", "description": "10.1163/18760104-20020007", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1163/18760104-20020007"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-06-26T00:00:00Z"}}, {"id": "10.1371/journal.pone.0102344", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:49Z", "type": "Journal Article", "created": "2014-07-17", "title": "Relationships Of Biomass With Environmental Factors In The Grassland Area Of Hulunbuir, China", "description": "Many studies have focused on the relationship between vegetation biomass and environmental factors in grassland. However, several questions remain to be answered, especially with regards to the spatial pattern of vegetation biomass. Thus, the distributed mechanism will be explored in the present study. Here, plant biomass was measured at 23 sites along a transect survey during the peak growing season in 2006. The data were analyzed with a classification and regression tree (CART) model. The structural equation modeling (SEM) was conducted to explicitly evaluate the both direct and indirect effects of these critical environmental elements on vegetation biomass. The results demonstrated that mean annual temperature (MAT) affected aboveground biomass (AGB) scored at -0.811 (P<0.05). The direct effect of MAT on belowground biomass (BGB) was -0.490 (P<0.05). The results were determined by SEM. Our results indicate that AGB and BGB in semi-arid ecosystems is strongly affected by precipitation and temperature. Future work shall attempt to take into account the integrated effects of precipitation and temperature. Meanwhile, partitioning the influences of environmental variations and vegetation types are helpful in illuminating the internal mechanism of biomass distribution.", "keywords": ["0106 biological sciences", "2. Zero hunger", "China", "Models", " Statistical", "Science", "Climate", "Data Collection", "Rain", "Q", "R", "Temperature", "Mongolia", "04 agricultural and veterinary sciences", "Plants", "15. Life on land", "Grassland", "01 natural sciences", "13. Climate action", "Medicine", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Plant Physiological Phenomena", "Research Article"]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0102344"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0102344", "name": "item", "description": "10.1371/journal.pone.0102344", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0102344"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-07-17T00:00:00Z"}}, {"id": "10.11646/phytotaxa.441.1.5", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:36Z", "type": "Journal Article", "created": "2020-04-30", "title": "&lt;p&gt;&lt;strong&gt;Typification and an emended description of &lt;em&gt;Astragalus moussavii &lt;/em&gt;(Fabaceae, Papilionoideae)&lt;/strong&gt;&lt;/p&gt;", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Type materials of Astragalus moussavii (Fabaceae) are designated as a lectotype and four isolectotypes. An epitype for the species is designated here too. An emended description of A. moussavii is provided with illustrations and information on several morphological characters not indicated in the protologue, including the size and shape of the terminal leaflet, petals characteristics, fruit and seed features. Based on field observations, a brief description of the habitat and data on ecology and biogeography of the species are provided and its conservation status is evaluated.</p></article>", "keywords": ["2. Zero hunger", "0106 biological sciences", "0301 basic medicine", "03 medical and health sciences", "14. Life underwater", "15. Life on land", "01 natural sciences"]}, "links": [{"href": "https://doi.org/10.11646/phytotaxa.441.1.5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Phytotaxa", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.11646/phytotaxa.441.1.5", "name": "item", "description": "10.11646/phytotaxa.441.1.5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.11646/phytotaxa.441.1.5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-30T00:00:00Z"}}, {"id": "10.1163/23524588-20230024", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:36Z", "type": "Journal Article", "created": "2023-11-29", "title": "Survey on public acceptance of insects as novel food in a non-EU country: a\u00a0case study of Serbia", "description": "Abstract <p>The present study aimed to evaluate the state of public perceptions and acceptance of insects as food in Serbia. The data was gathered via an online survey involving 1102 participants who completed Google Forms questionnaire shared through mailing lists and social media channels. The findings indicate that, while 85.3% of the respondents were aware of the use of insects in human diet, only 12.5% had previously consumed edible insects. The results of the chi-square tests further revealed that both familiarity and experience significantly affected willingness to buy insect-based food, whereas age and educational level did not. Men were more open to purchasing edible insects than women. Twice as many participants (49.4%) responded positively to eating insect-based food in which insects were not visible than to consuming recognisable insects (25.4%). Crisis (shortage of conventional sources of protein), curiosity, nutrition, and health benefits were the most frequently chosen reasons for including insect-based products in a diet, whereas disgust was the main reason against. Multiple correspondence analysis resulted in two dimensions that accounted for the largest amount of variance. The first dimension referred to familiarity with entomophagy, experience of eating edible insects, and willingness to buy insect-based products, whereby sustainability, affordability, taste, nutrition, and curiosity were the reasons for including insect-based products in a diet, while high price was a reason against. The second dimension indicated lack of familiarity, experience, or willingness to buy, with crisis as the most common motivating reason, and the perception of insects as pests and socio-cultural unacceptance as the main reasons against. Although almost half of the respondents reported willingness to consume processed insect-based products, the actual acceptance is possibly lower. Therefore, future research should focus on the provision of tasting opportunities as well as information on the benefits associated with the production and consumption of insects.</p", "keywords": ["0106 biological sciences", "0402 animal and dairy science", "04 agricultural and veterinary sciences", "01 natural sciences", "3. Good health"]}, "links": [{"href": "https://brill.com/downloadpdf/journals/jiff/10/1/article-p91_6.xml"}, {"href": "https://doi.org/10.1163/23524588-20230024"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Insects%20as%20Food%20and%20Feed", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1163/23524588-20230024", "name": "item", "description": "10.1163/23524588-20230024", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1163/23524588-20230024"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-08-24T00:00:00Z"}}, {"id": "10.1371/journal.pone.0125404", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:49Z", "type": "Journal Article", "created": "2015-05-06", "title": "The Contribution Of Mangrove Expansion To Salt Marsh Loss On The Texas Gulf Coast", "description": "Landscape-level shifts in plant species distribution and abundance can fundamentally change the ecology of an ecosystem. Such shifts are occurring within mangrove-marsh ecotones, where over the last few decades, relatively mild winters have led to mangrove expansion into areas previously occupied by salt marsh plants. On the Texas (USA) coast of the western Gulf of Mexico, most cases of mangrove expansion have been documented within specific bays or watersheds. Based on this body of relatively small-scale work and broader global patterns of mangrove expansion, we hypothesized that there has been a recent regional-level displacement of salt marshes by mangroves. We classified Landsat-5 Thematic Mapper images using artificial neural networks to quantify black mangrove (Avicennia germinans) expansion and salt marsh (Spartina alterniflora and other grass and forb species) loss over 20 years across the entire Texas coast. Between 1990 and 2010, mangrove area grew by 16.1 km(2), a 74% increase. Concurrently, salt marsh area decreased by 77.8 km(2), a 24% net loss. Only 6% of that loss was attributable to mangrove expansion; most salt marsh was lost due to conversion to tidal flats or water, likely a result of relative sea level rise. Our research confirmed that mangroves are expanding and, in some instances, displacing salt marshes at certain locations. However, this shift is not widespread when analyzed at a larger, regional level. Rather, local, relative sea level rise was indirectly implicated as another important driver causing regional-level salt marsh loss. Climate change is expected to accelerate both sea level rise and mangrove expansion; these mechanisms are likely to interact synergistically and contribute to salt marsh loss.", "keywords": ["Satellite Imagery", "0106 biological sciences", "Science", "Climate Change", "Marshes", "Poaceae", "01 natural sciences", "333", "Image Interpretation", " Computer-Assisted", "11. Sustainability", "14. Life underwater", "Mangrove swamps", "Ecosystem", "0105 earth and related environmental sciences", "Gulf of Mexico", "Artificial neural networks", "Winter", "Q", "R", "15. Life on land", "Texas", "Habitats", "13. Climate action", "Wetlands", "Medicine", "Avicennia", "Seasons", "Research Article"], "contacts": [{"organization": "Armitage, Anna R., Highfield, Wesley E., Brody, Samuel D., Louchouarn, Patrick,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0125404"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0125404", "name": "item", "description": "10.1371/journal.pone.0125404", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0125404"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-05-06T00:00:00Z"}}, {"id": "10.1186/2193-1801-2-s1-s1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2013-12-11", "title": "Effects Of Grazing Intensity On Soil Labile Organic Carbon Fractions In A Desert Steppe Area In Inner Mongolia", "description": "Abstract<p>Grazing can cause changes in soil carbon (C) level. This study aimed to elucidate the response of soil labile organic carbon (SLOC) under four different grazing intensities: non grazing (NG), 0 sheep\uffc2\uffb7ha-1; light grazing (LG), 0.91 sheep\uffc2\uffb7ha-1; moderate grazing (MG), 1.82 sheep\uffc2\uffb7ha-1, and heavy grazing (HG), 2.73 sheep\uffc2\uffb7ha-1. Results showed that there was no significant difference in total soil organic carbon (TOC) and soil inorganic carbon (SIC) content from three soil depths (0-15 cm, 15-30 cm, and 30-45 cm) under different grazing intensities. However, the SLOC including particulate organic carbon (POC), light fraction organic carbon (LFOC), and readily oxidizable carbon (ROC) content at a depth of 0-15 cm decreased with the increasing grazing intensity among LG, MG and HG. The SLOC content at depths of 15-30 cm under the NG and LG were significantly higher than that under the MG and the HG. The TOC and SLOC content decreased with increasing depths of soil horizons, but SIC content increased. The variation trend of the density of different soil carbon fractions and the ratio of individual SLOC fractions to TOC were similar to that of the soil carbon content of corresponding fractions. These results indicated that MG and HG treatments caused C loss at 0-30 cm; and SLOC was more sensitive than TOC in response to different grazing intensities.</p>", "keywords": ["2. Zero hunger", "Proceedings", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water"], "contacts": [{"organization": "Yun Tian, Jixin Cao, Xiangyang Sun, Xiaoping Wang, Lin Zhang,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1186/2193-1801-2-s1-s1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/SpringerPlus", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/2193-1801-2-s1-s1", "name": "item", "description": "10.1186/2193-1801-2-s1-s1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/2193-1801-2-s1-s1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-12-01T00:00:00Z"}}, {"id": "10.1371/journal.pone.0139626", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:49Z", "type": "Journal Article", "created": "2015-10-01", "title": "Profile Changes In The Soil Microbial Community When Desert Becomes Oasis", "description": "The conversion of virgin desert into oasis farmland creates two contrasting types of land-cover. During oasis formation with irrigation and fertilizer application, however, the changes in the soil microbial population, which play critical roles in the ecosystem, remain poorly understood. We applied high-throughput pyrosequencing to investigate bacterial and archaeal communities throughout the profile (0-3 m) in an experimental field, where irrigation and fertilization began in 1990 and cropped with winter wheat since then. To assess the effects of cultivation, the following treatments were compared with the virgin desert: CK (no fertilizer), PK, NK, NP, NPK, NPKR, and NPKM (R: straw residue; M: manure fertilizer). Irrigation had a greater impact on the overall microbial community than fertilizer application. The greatest impact occurred in topsoil (0-0.2 m), e.g., Cyanobacteria (25% total abundance) were most abundant in desert soil, while Actinobacteria (26%) were most abundant in oasis soil. The proportions of extremophilic and photosynthetic groups (e.g., Deinococcus-Thermus and Cyanobacteria) decreased, while the proportions of R-strategy (e.g., Gammaproteobacteria including Xanthomonadales), nitrifying (e.g., Nitrospirae), and anaerobic bacteria (e.g., Anaerolineae) increased throughout the oasis profile. Archaea occurred only in oasis soil. The impact of fertilizer application was mainly reflected in the non-dominant communities or finer taxonomic divisions. Oasis formation led to a dramatic shift in microbial community and enhanced soil enzyme activities. The rapidly increased soil moisture and decreased salt caused by irrigation were responsible for this shift. Furthermore, difference in fertilization and crop growth altered the organic carbon contents in the soil, which resulted in differences of microbial communities within oasis.", "keywords": ["2. Zero hunger", "Agricultural Irrigation", "Bacteria", "Science", "Q", "R", "High-Throughput Nucleotide Sequencing", "04 agricultural and veterinary sciences", "Environment", "15. Life on land", "6. Clean water", "13. Climate action", "11. Sustainability", "Medicine", "0401 agriculture", " forestry", " and fisheries", "Seasons", "Desert Climate", "Fertilizers", "Water Microbiology", "Biomarkers", "Ecosystem", "Soil Microbiology", "Research Article"], "contacts": [{"organization": "Yan Li, Lisong Tang, Zhongjun Jia, Chenhua Li,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0139626"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0139626", "name": "item", "description": "10.1371/journal.pone.0139626", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0139626"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-10-01T00:00:00Z"}}, {"id": "10.11646/zootaxa.4780.2.7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:36Z", "type": "Journal Article", "created": "2020-05-25", "title": "Descriptions of two new species of the genus Paragus Latreille (Diptera: Syrphidae), with a key to males of all South African species", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Two new species of the genus Paragus Latreille, 1804 are described from the Republic of South Africa: Paragus longipilus Tot, Vuji\u0107 et Radenkovi\u0107 sp. nov. and Paragus megacercus Tot, Vuji\u0107 et Radenkovi\u0107 sp. nov. These new species belong to the subgenus Pandasyopthalmus Stuckenberg, 1954a. Paragus longipilus sp. nov. is a member of the P. jozanus group, whereas Paragus megacercus sp. nov. belongs to the P. tibialis group. The taxonomic status of Paragus chalybeatus Hull, 1964 is revised and proposed as synonym of Paragus punctatus Hull, 1949. Additionally, an identification key to males of the South African species of Paragus is provided. Results of the present study confirm a significant level of endemism of Paragus in the Afrotropical Region (12 out of 29).\u00a0</p></article>", "keywords": ["Male", "0106 biological sciences", "Paragus longipilus sp. nov", "new synonym", "Insecta", "Arthropoda", "Diptera", "Biodiversity", "01 natural sciences", "Paragus megacercus sp. nov", "Afrotropical Region", "endemism", "Animalia", "Animals", "Syrphidae", "Taxonomy"]}, "links": [{"href": "https://doi.org/10.11646/zootaxa.4780.2.7"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Zootaxa", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.11646/zootaxa.4780.2.7", "name": "item", "description": "10.11646/zootaxa.4780.2.7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.11646/zootaxa.4780.2.7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-05-25T00:00:00Z"}}, {"id": "10.1175/BAMS-D-17-0138.1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:36Z", "type": "Journal Article", "created": "2018-09-11", "title": "MSWEP V2 global 3-hourly 0.1\u00b0 precipitation: methodology and quantitative assessment", "description": "Abstract<p>We present Multi-Source Weighted-Ensemble Precipitation, version 2 (MSWEP V2), a gridded precipitation P dataset spanning 1979\uffe2\uff80\uff932017. MSWEP V2 is unique in several aspects: i) full global coverage (all land and oceans); ii) high spatial (0.1\uffc2\uffb0) and temporal (3 hourly) resolution; iii) optimal merging of P estimates based on gauges [WorldClim, Global Historical Climatology Network-Daily (GHCN-D), Global Summary of the Day (GSOD), Global Precipitation Climatology Centre (GPCC), and others], satellites [Climate Prediction Center morphing technique (CMORPH), Gridded Satellite (GridSat), Global Satellite Mapping of Precipitation (GSMaP), and Tropical Rainfall Measuring Mission (TRMM) Multisatellite Precipitation Analysis (TMPA) 3B42RT)], and reanalyses [European Centre for Medium-Range Weather Forecasts (ECMWF) interim reanalysis (ERA-Interim) and Japanese 55-year Reanalysis (JRA-55)]; iv) distributional bias corrections, mainly to improve the P frequency; v) correction of systematic terrestrial P biases using river discharge Q observations from 13,762 stations across the globe; vi) incorporation of daily observations from 76,747 gauges worldwide; and vii) correction for regional differences in gauge reporting times. MSWEP V2 compares substantially better with Stage IV gauge\uffe2\uff80\uff93radar P data than other state-of-the-art P datasets for the United States, demonstrating the effectiveness of the MSWEP V2 methodology. Global comparisons suggest that MSWEP V2 exhibits more realistic spatial patterns in mean, magnitude, and frequency. Long-term mean P estimates for the global, land, and ocean domains based on MSWEP V2 are 955, 781, and 1,025 mm yr\uffe2\uff88\uff921, respectively. Other P datasets consistently underestimate P amounts in mountainous regions. Using MSWEP V2, P was estimated to occur 15.5%, 12.3%, and 16.9% of the time on average for the global, land, and ocean domains, respectively. MSWEP V2 provides unique opportunities to explore spatiotemporal variations in P, improve our understanding of hydrological processes and their parameterization, and enhance hydrological model performance.</p>", "keywords": ["LAND", "SATELLITE-OBSERVATIONS", "EXTREME-PRECIPITATION", "GAUGE OBSERVATIONS", "TROPICAL RAINFALL", "PASSIVE MICROWAVE", "15. Life on land", "01 natural sciences", "6. Clean water", "MODEL", "ERA-INTERIM REANALYSIS", "DATA ASSIMILATION", "13. Climate action", "Earth and Environmental Sciences", "NETWORK", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://journals.ametsoc.org/downloadpdf/journals/bams/100/3/bams-d-17-0138.1.xml"}, {"href": "https://doi.org/10.1175/BAMS-D-17-0138.1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bulletin%20of%20the%20American%20Meteorological%20Society", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1175/BAMS-D-17-0138.1", "name": "item", "description": "10.1175/BAMS-D-17-0138.1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1175/BAMS-D-17-0138.1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-03-01T00:00:00Z"}}, {"id": "10.1175/JCLI-D-17-0775.1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:36Z", "type": "Journal Article", "created": "2018-04-10", "title": "Global Assessment of the Standardized Evapotranspiration Deficit Index (SEDI) for Drought Analysis and Monitoring", "description": "<p>This article developed and implemented a new methodology for calculating the standardized evapotranspiration deficit index (SEDI) globally based on the log-logistic distribution to fit the evaporation deficit (ED), the difference between actual evapotranspiration (ETa) and atmospheric evaporative demand (AED). Our findings demonstrate that, regardless of the AED dataset used, a log-logistic distribution most optimally fitted the ED time series. As such, in many regions across the terrestrial globe, the SEDI is insensitive to the AED method used for calculation, with the exception of winter months and boreal regions. The SEDI showed significant correlations ( p &lt; 0.05) with the standardized precipitation evapotranspiration index (SPEI) across a wide range of regions, particularly for short (&lt;3 month) SPEI time scales. This work provides a robust approach for calculating spatially and temporally comparable SEDI estimates, regardless of the climate region and land surface conditions, and it assesses the performance and the applicability of the SEDI to quantify drought severity across varying crop and natural vegetation areas.</p>", "keywords": ["2. Zero hunger", "Take urgent action to combat climate change and its impacts", "Drought", "Evapotranspiration", "Hydrometeorology", "0207 environmental engineering", "02 engineering and technology", "15. Life on land", "01 natural sciences", "6. Clean water", "13. Climate action", "ndices", "http://metadata.un.org/sdg/13", "Climate variability", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://journals.ametsoc.org/doi/pdf/10.1175/JCLI-D-17-0775.1"}, {"href": "https://doi.org/10.1175/JCLI-D-17-0775.1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Climate", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1175/JCLI-D-17-0775.1", "name": "item", "description": "10.1175/JCLI-D-17-0775.1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1175/JCLI-D-17-0775.1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-07-01T00:00:00Z"}}, {"id": "10.1175/bams-d-19-0316.1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:36Z", "type": "Journal Article", "created": "2021-04-29", "title": "Closing the water cycle from observations across scales: Where do we stand?", "description": "ABSTRACT<p>Life on Earth vitally depends on the availability of water. Human pressure on freshwater resources is increasing, as is human exposure to weather-related extremes (droughts, storms, floods) caused by climate change. Understanding these changes is pivotal for developing mitigation and adaptation strategies. The Global Climate Observing System (GCOS) defines a suite of essential climate variables (ECVs), many related to the water cycle, required to systematically monitor Earth\uffe2\uff80\uff99s climate system. Since long-term observations of these ECVs are derived from different observation techniques, platforms, instruments, and retrieval algorithms, they often lack the accuracy, completeness, and resolution, to consistently characterize water cycle variability at multiple spatial and temporal scales. Here, we review the capability of ground-based and remotely sensed observations of water cycle ECVs to consistently observe the hydrological cycle. We evaluate the relevant land, atmosphere, and ocean water storages and the fluxes between them, including anthropogenic water use. Particularly, we assess how well they close on multiple temporal and spatial scales. On this basis, we discuss gaps in observation systems and formulate guidelines for future water cycle observation strategies. We conclude that, while long-term water cycle monitoring has greatly advanced in the past, many observational gaps still need to be overcome to close the water budget and enable a comprehensive and consistent assessment across scales. Trends in water cycle components can only be observed with great uncertainty, mainly due to insufficient length and homogeneity. An advanced closure of the water cycle requires improved model\uffe2\uff80\uff93data synthesis capabilities, particularly at regional to local scales.</p>", "keywords": ["550", "Hydrologic cycle", "0207 environmental engineering", "[SDU.STU]Sciences of the Universe [physics]/Earth Sciences", "02 engineering and technology", "/dk/atira/pure/sustainabledevelopmentgoals/clean_water_and_sanitation; name=SDG 6 - Clean Water and Sanitation", "551", "01 natural sciences", "333", "Water masses", "[SDU] Sciences of the Universe [physics]", "storage", "/dk/atira/pure/sustainabledevelopmentgoals/climate_action; name=SDG 13 - Climate Action", "Water budget/balance", "Water budget", "0105 earth and related environmental sciences", "Surface fluxes", "/dk/atira/pure/sustainabledevelopmentgoals/life_below_water; name=SDG 14 - Life Below Water", "Water masses/storage", "balance", "Surface observations", "15. Life on land", "6. Clean water", "Satellite observations", "[SDU]Sciences of the Universe [physics]", "13. Climate action", "[SDU.STU] Sciences of the Universe [physics]/Earth Sciences"]}, "links": [{"href": "https://centaur.reading.ac.uk/98278/1/Dorigo-2021-Closing-the-water-cycle-from-observ.pdf"}, {"href": "https://journals.ametsoc.org/downloadpdf/journals/bams/102/10/BAMS-D-19-0316.1.xml"}, {"href": "https://doi.org/10.1175/bams-d-19-0316.1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bulletin%20of%20the%20American%20Meteorological%20Society", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1175/bams-d-19-0316.1", "name": "item", "description": "10.1175/bams-d-19-0316.1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1175/bams-d-19-0316.1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-01T00:00:00Z"}}, {"id": "10.1175/ei135.1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:37Z", "type": "Journal Article", "created": "2005-04-22", "title": "Surface Soil Changes Following Selective Logging In An Eastern Amazon Forest", "description": "Abstract<p>In the Brazilian Amazon, selective logging is second only to forest conversion in its extent. Conversion to pasture or agriculture tends to reduce soil nutrients and site productivity over time unless fertilizers are added. Logging removes nutrients in bole wood, enough that repeated logging could deplete essential nutrients over time. After a single logging event, nutrient losses are likely to be too small to observe in the large soil nutrient pools, but disturbances associated with logging also alter soil properties. Selective logging, particularly reduced-impact logging, results in consistent patterns of disturbance that may be associated with particular changes in soil properties. Soil bulk density, pH, carbon (C), nitrogen (N), phosphorus (P), calcium (Ca), magnesium (Mg), potassium (K), iron (Fe), aluminum (Al), \uffce\uffb413C, \uffce\uffb415N, and P fractionations were measured on the soils of four different types of logging-related disturbances: roads, decks, skids, and treefall gaps. Litter biomass and percent bare ground were also determined in these areas. To evaluate the importance of fresh foliage inputs from downed tree crowns in treefall gaps, foliar nutrients for mature forest trees were also determined and compared to that of fresh litterfall. The immediate impacts of logging on soil properties and how these might link to the longer-term estimated nutrient losses and the observed changes in soils were studied.</p><p>In the most disturbed areas, roads and decks, the authors found litter biomass removed and reduced soil C, N, P, particularly organic P, and \uffce\uffb413C. Soils were compacted and often experienced reducing conditions in the deck areas, resulting in higher pH, Ca, and Mg. No increases in soil nutrients were observed in the treefall gaps despite the flush of nutrient-rich fresh foliage in the tree crown that is left behind after the bole wood is removed. Observed nutrient losses are most likely caused by displacement of the litter layer. Increases in soil pH, Ca, and Mg occur in areas with reducing conditions (decks and roads) and may result from Fe reduction, freeing exchange sites that can then retain these cations. Calculations suggest that nutrient inputs from crown foliage in treefall gaps are probably too small to detect against the background level of nutrients in the top soils. The logging disturbances with the greatest spatial extent, skids and gaps, have the smallest immediate effect on soil nutrients, while those with the smallest spatial extent, roads and decks, have the largest impact. The changes observed 3\uffe2\uff80\uff936 months after logging were similar to those measured 16 yr after logging, suggesting some interesting linkages between the mechanisms causing the immediate change and those maintaining these changes over time. The direct impacts on soil properties appear less important than the loss of nutrients in bole wood in determining the sustainability of selective logging. Medium-to-low intensity selective logging with a sufficiently long cutting cycle may be sustainable in these forests.</p>", "keywords": ["0106 biological sciences", "15. Life on land", "01 natural sciences"], "contacts": [{"organization": "E C C Telles, Gregory P. Asner, Zayra Prado, Lydia Olander, Mercedes M. C. Bustamante, Pl\u00ednio Barbosa de Camargo,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1175/ei135.1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Earth%20Interactions", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1175/ei135.1", "name": "item", "description": "10.1175/ei135.1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1175/ei135.1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-04-01T00:00:00Z"}}, {"id": "10.1175/jhm-d-18-0256.1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:37Z", "type": "Journal Article", "created": "2019-11-11", "title": "Comparison of Rainfall Products over Sub-Saharan Africa", "description": "Abstract<p>An ever-increasing number of rainfall estimates is available. They are used in many important applications such as flood/drought monitoring, water management, or climate monitoring. Such data are especially valuable in sub-Saharan Africa, where rainfall has considerable socioeconomic impacts and the gauge and radar networks are sparse. The choice of a rainfall product can significantly influence the performance of such applications. This study reviews previous works, evaluating or comparing rainfall products over different parts of sub-Saharan Africa. Three types of rainfall products are considered: the gauge-only, the satellite-based, and the reanalysis ones. In addition to the global rainfall products, we included three regional ones specifically developed for Africa: the African Rainfall Climatology version 2 (ARC2), the Rainfall Estimate version 2 (RFE2), and the Tropical Applications of Meteorology Using Satellite Data and Ground-Based Observations (TAMSAT) African Rainfall Climatology and Time Series (TARCAT). The gauge density, the orography, and the rainfall regime, which vary with the climate and the season, influence the performance of the rainfall products. This review does not focus on comparing results, as many other publications doing so are already available. Instead, we propose this review as a guide through the different rainfall products available over Africa, and the factors influencing their performances. With this review, the reader can make informed decisions about which products serve their specific purpose best.</p>", "keywords": ["Rainfall", "13. Climate action", "0207 environmental engineering", "Model comparison", "Surface observations", "02 engineering and technology", "910", "15. Life on land", "01 natural sciences", "6. Clean water", "Satellite observations", "0105 earth and related environmental sciences"], "contacts": [{"organization": "le Coz, C.M.L. (author), van de Giesen, N.C. (author),", "roles": ["creator"]}]}, "links": [{"href": "https://journals.ametsoc.org/downloadpdf/journals/hydr/21/4/jhm-d-18-0256.1.xml"}, {"href": "https://doi.org/10.1175/jhm-d-18-0256.1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Hydrometeorology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1175/jhm-d-18-0256.1", "name": "item", "description": "10.1175/jhm-d-18-0256.1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1175/jhm-d-18-0256.1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-01T00:00:00Z"}}, {"id": "10.1175/jhm-d-16-0280.1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:37Z", "type": "Journal Article", "created": "2017-12-01", "title": "Toward a Surface Soil Moisture Product at High Spatiotemporal Resolution: Temporally Interpolated, Spatially Disaggregated SMOS Data", "description": "Abstract                <p>High spatial and temporal resolution surface soil moisture is required for most hydrological and agricultural applications. The recently developed Disaggregation based on Physical and Theoretical Scale Change (DisPATCh) algorithm provides 1-km-resolution surface soil moisture by downscaling the 40-km Soil Moisture Ocean Salinity (SMOS) soil moisture using Moderate Resolution Imaging Spectroradiometer (MODIS) data. However, the temporal resolution of DisPATCh data is constrained by the temporal resolution of SMOS (a global coverage every 3 days) and further limited by gaps in MODIS images due to cloud cover. This paper proposes an approach to overcome these limitations based on the assimilation of the 1-km-resolution DisPATCh data into a simple dynamic soil model forced by (inaccurate) precipitation data. The performance of the approach was assessed using ground measurements of surface soil moisture in the Yanco area in Australia and the Tensift-Haouz region in Morocco during 2014. It was found that the analyzed daily 1-km-resolution surface soil moisture compared slightly better to in situ data for all sites than the original disaggregated soil moisture products. Over the entire year, assimilation increased the correlation coefficient between estimated soil moisture and ground measurements from 0.53 to 0.70, whereas the mean unbiased RMSE (ubRMSE) slightly decreased from 0.07 to 0.06 m3 m\uffe2\uff88\uff923 compared to the open-loop force\uffe2\uff80\uff93restore model. The proposed assimilation scheme has significant potential for large-scale applications over semiarid areas, since the method is based on data available at the global scale together with a parsimonious land surface model.</p", "keywords": ["550", "13. Climate action", "[SDE.ES] Environmental Sciences/Environment and Society", "0207 environmental engineering", "02 engineering and technology", "14. Life underwater", "15. Life on land", "[SDE.ES]Environmental Sciences/Environment and Society", "01 natural sciences", "6. Clean water", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://journals.ametsoc.org/jhm/article-pdf/19/1/183/4795944/jhm-d-16-0280_1.pdf"}, {"href": "https://doi.org/10.1175/jhm-d-16-0280.1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Hydrometeorology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1175/jhm-d-16-0280.1", "name": "item", "description": "10.1175/jhm-d-16-0280.1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1175/jhm-d-16-0280.1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-01-01T00:00:00Z"}}, {"id": "10.1177/001132557500800211", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:37Z", "type": "Journal Article", "created": "2016-07-15", "title": "Book Review Section: Potpourri: Religions et Philosophic Africaines", "keywords": ["05 social sciences", "0507 social and economic geography", "0506 political science"], "contacts": [{"organization": "Suzanne Tarica", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1177/001132557500800211"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/A%20Current%20Bibliography%20on%20African%20Affairs", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1177/001132557500800211", "name": "item", "description": "10.1177/001132557500800211", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1177/001132557500800211"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1975-12-01T00:00:00Z"}}, {"id": "10.1177/0309133319873309", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:37Z", "type": "Journal Article", "created": "2019-09-09", "title": "The landscape of soil carbon data: Emerging questions, synergies and databases", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p> Soil carbon has been measured for over a century in applications ranging from understanding biogeochemical processes in natural ecosystems to quantifying the productivity and health of managed systems. Consolidating diverse soil carbon datasets is increasingly important to maximize their value, particularly with growing anthropogenic and climate change pressures. In this progress report, we describe recent advances in soil carbon data led by the International Soil Carbon Network and other networks. We highlight priority areas of research requiring soil carbon data, including (a) quantifying boreal, arctic and wetland carbon stocks, (b) understanding the timescales of soil carbon persistence using radiocarbon and chronosequence studies, (c) synthesizing long-term and experimental data to inform carbon stock vulnerability to global change, (d) quantifying root influences on soil carbon and (e) identifying gaps in model\u2013data integration. We also describe the landscape of soil datasets currently available, highlighting their strengths, weaknesses and synergies. Now more than ever, integrated soil data are needed to inform climate mitigation, land management and agricultural practices. This report will aid new data users in navigating various soil databases and encourage scientists to make their measurements publicly available and to join forces to find soil-related solutions. </p></article>", "keywords": ["long-term ecological research", "2. Zero hunger", "soil chronosequence", "model\u2013data integration", "soil carbon stabilization", "Soil carbon data", "15. Life on land", "01 natural sciences", "wetland carbon", "6. Clean water", "root traits", "soil database", "soil radiocarbon", "13. Climate action", "11. Sustainability", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://journals.sagepub.com/doi/pdf/10.1177/0309133319873309"}, {"href": "https://doi.org/10.1177/0309133319873309"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Progress%20in%20Physical%20Geography%3A%20Earth%20and%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1177/0309133319873309", "name": "item", "description": "10.1177/0309133319873309", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1177/0309133319873309"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-09-08T00:00:00Z"}}, {"id": "10.1177/107769908906600435", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:37Z", "type": "Journal Article", "created": "2011-12-14", "title": "The Research Climate in Programs in Journalism and Mass Communication", "keywords": ["0508 media and communications", "05 social sciences", "0506 political science"], "contacts": [{"organization": "John C. Schweitzer", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1177/107769908906600435"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journalism%20Quarterly", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1177/107769908906600435", "name": "item", "description": "10.1177/107769908906600435", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1177/107769908906600435"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1989-12-01T00:00:00Z"}}, {"id": "10.1177/0959683619826637", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:37Z", "type": "Journal Article", "created": "2019-02-15", "title": "Holocene demographic fluctuations, climate and erosion in the Mediterranean: A meta data-analysis", "description": "<p> As part of the Changing the Face of the Mediterranean Project, we consider how human pressure and concomitant erosion has affected a range of Mediterranean landscapes between the Neolithic and, in some cases, the post-medieval period. Part of this assessment comprises an investigation of relationships among palaeodemographic data, evidence for vegetation change and some consideration of rapid climate change events. The erosion data include recent or hitherto unpublished work from the authors. Where possible, we consider summed probabilities of 14C dates as well as the first published synthesis of all known optically stimulated luminescence dated sequences. The results suggest that while there were some periods when erosion took place contemporaneously across a number of regions, possibly induced by climate changes, more often than not, we see a complex and heterogeneous interplay of demographic and environmental changes that result in a mixed pattern of erosional activity across the Mediterranean. </p>", "keywords": ["[SDE] Environmental Sciences", "demography", "human impact", "550", "[SDU.STU.GM] Sciences of the Universe [physics]/Earth Sciences/Geomorphology", "[SDU.STU.GP]Sciences of the Universe [physics]/Earth Sciences/Geophysics [physics.geo-ph]", "[SDE.MCG]Environmental Sciences/Global Changes", "[SDU.STU]Sciences of the Universe [physics]/Earth Sciences", "Mediterranean", "01 natural sciences", "[SDU] Sciences of the Universe [physics]", "[SDE.ES] Environmental Sciences/Environment and Society", "0601 history and archaeology", "[SDU.STU.GM]Sciences of the Universe [physics]/Earth Sciences/Geomorphology", "[SDE.ES]Environmental Sciences/Environment and Society", "demography; erosion; geoarchaeology; Holocene; human impact; Mediterranean", "0105 earth and related environmental sciences", "Holocene", "06 humanities and the arts", "15. Life on land", "erosion", "[SDE.MCG] Environmental Sciences/Global Changes", "[SDU]Sciences of the Universe [physics]", "13. Climate action", "[SDE]Environmental Sciences", "[SDU.STU] Sciences of the Universe [physics]/Earth Sciences", "[SDU.STU.GP] Sciences of the Universe [physics]/Earth Sciences/Geophysics [physics.geo-ph]", "geoarchaeology"]}, "links": [{"href": "https://iris.unito.it/bitstream/2318/1858935/2/Walsh_etal_2019.pdf"}, {"href": "http://journals.sagepub.com/doi/pdf/10.1177/0959683619826637"}, {"href": "https://doi.org/10.1177/0959683619826637"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Holocene", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1177/0959683619826637", "name": "item", "description": "10.1177/0959683619826637", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1177/0959683619826637"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-02-14T00:00:00Z"}}, {"id": "10.1177/1178622120944847", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:37Z", "type": "Journal Article", "created": "2020-07-27", "title": "Assessment of the Impact of Distinct Vineyard Management Practices on Soil Physico-Chemical Properties", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p> Vines are one of the most ancient crops, with great relevance worldwide but especially in wine-growing areas in Southern Europe. In the Bairrada wine region of north-central Portugal, vineyards have long been managed intensively, with frequent tillage and application of fertilizers and phytochemical products. During the last decade, however, these conventional practices are increasingly becoming substituted by more sustainable management practices, in particular integrated production (IP) and, to a lesser degree, no-tillage (NT) and biodynamic (BD). This study investigated differences in soil quality of 4 vineyards managed with each of these practices for at least 6\u2009years. Twelve topsoil (0-15\u2009cm) samples were collected in vineyard rows and inter-rows, during one sampling campaign, and analyzed for selected physical and chemical properties. These physical properties were texture, bulk density and penetration resistance, while the chemical properties included pH, electrical conductivity, and the contents of organic matter, nutrients, cations, and metals. Nearby forest soils were also sampled as a reference, since this was the prior land-use in the study sites. The obtained results demonstrated that conventional practices were associated with diminished soil quality, as indicated by lower contents of organic matter and nutrients, such as total nitrogen (TN) and phosphorus (TP), and exchangeable cations, as well as by a higher concentration of Cu and, in some samples, of Ni and Pb. Cu concentrations were also relatively high under NT, so that overall soil quality, particularly associated with fertility, was best under IP. </p></article>", "keywords": ["Environmental sciences", "2. Zero hunger", "0401 agriculture", " forestry", " and fisheries", "GE1-350", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water"]}, "links": [{"href": "http://journals.sagepub.com/doi/pdf/10.1177/1178622120944847"}, {"href": "https://doi.org/10.1177/1178622120944847"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Air%2C%20Soil%20and%20Water%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1177/1178622120944847", "name": "item", "description": "10.1177/1178622120944847", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1177/1178622120944847"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-01-01T00:00:00Z"}}, {"id": "10.1177/87552930221083326", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:37Z", "type": "Journal Article", "created": "2022-03-24", "title": "Simplified solution for seismic earth pressures exerted on flexible walls", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p> Seismic earth pressures acting on basement walls and retaining walls are most commonly computed using limit state methods, in which the effects of earthquake shaking are represented by a horizontal body force in an active soil wedge. Limit state methods provide a poor physical representation of the fundamental mechanisms that give rise to seismic earth pressures, which depend on relative wall\u2013soil displacements. Such displacements are a consequence of soil\u2013structure interaction, which, in the absence of a strong inertial component (e.g. from a connected structure), are mainly sensitive to the ratio of wavelength-to-wall height and relative wall-to-soil flexibility. We present a simplified single-frequency procedure for computing seismic earth pressures applied to flexible retaining structures by vertically propagating shear waves. The procedure accounts for the first-order wavelength and wall flexibility effects while simplifying a number of secondary effects in a manner that produces a slightly conservative outcome. Input parameters to the proposed solution are readily attainable for engineering design applications. For typical earth retention systems, earth pressures computed using the proposed procedure are lower than those computed using limit state solutions. Predictions from the proposed solution compare well with results of numerical simulations and centrifuge modeling from literature, whereas limit state procedures either do not provide a physically meaningful solution or produce strongly biased predictions (overprediction of experiments, underprediction of available simulations). </p></article>", "keywords": ["flexible walls", "kinematic soil-structure interaction", "analytical solution", "Seismic earth pressures", "550", "0211 other engineering and technologies", "02 engineering and technology", "simplified solution", "620"]}, "links": [{"href": "http://journals.sagepub.com/doi/pdf/10.1177/87552930221083326"}, {"href": "https://doi.org/10.1177/87552930221083326"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Earthquake%20Spectra", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1177/87552930221083326", "name": "item", "description": "10.1177/87552930221083326", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1177/87552930221083326"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-03-23T00:00:00Z"}}, {"id": "10.1179/174328208x281987", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:37Z", "type": "Journal Article", "created": "2008-06-06", "title": "Drought Changes Nutrient Sources, Content And Stoichiometry In The Bryophyte Hypnum Cupressiforme Hedw. Growing In A Mediterranean Forest", "description": "We conducted a 6 year field experiment in an evergreen Quercus ilex forest where we simulated the increased drought projected by Global Circulation Models (GCM) and ecophysiological models for the ...", "keywords": ["0106 biological sciences", "15. Life on land", "01 natural sciences", "6. Clean water"]}, "links": [{"href": "https://doi.org/10.1179/174328208x281987"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Bryology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1179/174328208x281987", "name": "item", "description": "10.1179/174328208x281987", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1179/174328208x281987"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-03-01T00:00:00Z"}}, {"id": "10.1186/s40168-020-00941-7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:39Z", "type": "Journal Article", "created": "2020-11-19", "title": "Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms", "description": "Abstract Background <p>The global threat of antimicrobial resistance (AMR) is a One Health problem impacted by antimicrobial use (AMU) for human and livestock applications. Extensive Iberian swine production is based on a more sustainable and eco-friendly management system, providing an excellent opportunity to evaluate how sustained differences in AMU impact the resistome, not only in the animals but also on the farm environment. Here, we evaluate the resistome footprint of an extensive pig farming system, maintained for decades, as compared to that of industrialized intensive pig farming by analyzing 105 fecal, environmental and slurry metagenomes from 38 farms.</p>  Results <p>Our results evidence a significantly higher abundance of antimicrobial resistance genes (ARGs) on intensive farms and a link between AMU and AMR to certain antimicrobial classes. We observed differences in the resistome across sample types, with a higher richness and dispersion of ARGs within environmental samples than on those from feces or slurry. Indeed, a deeper analysis revealed that differences among the three sample types were defined by taxa-ARGs associations. Interestingly, mobilome analyses revealed that the observed AMR differences between intensive and extensive farms could be linked to differences in the abundance of mobile genetic elements (MGEs). Thus, while there were no differences in the abundance of chromosomal-associated ARGs between intensive and extensive herds, a significantly higher abundance of integrons in the environment and plasmids, regardless of the sample type, was detected on intensive farms.</p>  Conclusions <p>Overall, this study shows how AMU, production system, and sample type influence, mainly through MGEs, the profile and dispersion of ARGs in pig production.</p>", "keywords": ["0301 basic medicine", "Farms", "Sanidad animal", "Swine", "Antimicrobial resistance", "Microbial ecology", "Sustainable farming", "Cerdos", "Feces", "03 medical and health sciences", "Anti-Infective Agents", "Environmental Microbiology", "Animals", "Mobilome", "Antiinfecciosos", "One health", "2. Zero hunger", "Excrementos", "0303 health sciences", "Research", "QR100-130", "Drug Resistance", " Microbial", "15. Life on land", "Farm environment", "6. Clean water", "Genes", " Bacterial", "Animals", " Domestic", "2401.05 desarrollo Animal", "Metagenome", "Veterinaria"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1186/s40168-020-00941-7.pdf"}, {"href": "https://doi.org/10.1186/s40168-020-00941-7"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40168-020-00941-7", "name": "item", "description": "10.1186/s40168-020-00941-7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40168-020-00941-7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-19T00:00:00Z"}}, {"id": "10.1186/s12302-024-00918-5", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2024-05-14", "title": "Delivery rate alters the effects of tire wear particles on soil microbial activities", "description": "Abstract                 Background                 <p>Tire wear particles (TWPs) produced by the abrasion between tires and road surfaces have been recognized as an emerging threat to soil health globally in recent years. They can be transported from the road surface to adjacent soil at different delivery rates, with precipitation a main driver underpinning this movement. However, studies typically assume an abrupt exposure of TWPs in their experimental design. In this study, we investigated the impacts of abrupt and gradual delivery of TWPs on soil physicochemical properties and microbial activities. We used two different delivery rates of TWPs (abrupt and gradual) and devised two experimental phases, namely the TWPs-delivery period (phase 1) and the end-of-delivery period (phase 2).</p>                                Results                 <p>We found that the gradual TWPs delivery treatments negatively influenced the activity of carbon cycle-related enzymes (\uffce\uffb2-glucosidase and \uffce\uffb2-D-1,4-cellobiosidase). Furthermore, the abrupt treatment highly increased the effects on nitrogen cycle-related enzyme activity (\uffce\uffb2-1,4-N-acetyl-glucosaminidase). In phase 2 (end-of-delivery period), each enzyme activity was returned to a similar level as the control group, and these changes between phases 1 and 2 depended on the prior delivery rates.</p>                                Conclusion                 <p>Abruptly and gradually delivered TWPs induce different responses to soil microbial activities. Our findings imply that the delivery rate of TWPs could be a key factor changing the effects of TWPs, further enhancing our understanding of the ecological impacts of TWPs.</p>                                Graphical Abstract", "keywords": ["2. Zero hunger", "570", "Microplastics", "Soil pH", "Soil respiration", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie", "15. Life on land", "01 natural sciences", "6. Clean water", "Environmental sciences", "Environmental law", "Gradual exposure", "13. Climate action", "Enzyme activities", "GE1-350", "Abrupt exposure", "K3581-3598", "Soil aggregates", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1186/s12302-024-00918-5.pdf"}, {"href": "https://doi.org/10.1186/s12302-024-00918-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Sciences%20Europe", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12302-024-00918-5", "name": "item", "description": "10.1186/s12302-024-00918-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12302-024-00918-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-02-23T00:00:00Z"}}, {"id": "10.1186/s12862-022-02089-4", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2022-11-17", "title": "Land use and soil characteristics affect soil organisms differently from above-ground assemblages", "description": "Abstract                 Background                 <p>Land-use is a major driver of changes in biodiversity worldwide, but studies have overwhelmingly focused on above-ground taxa: the effects on soil biodiversity are less well known, despite the importance of soil organisms in ecosystem functioning. We modelled data from a global biodiversity database to compare how the abundance of soil-dwelling and above-ground organisms responded to land use and soil properties.</p>                                Results                 <p>We found that land use affects overall abundance differently in soil and above-ground assemblages. The abundance of soil organisms was markedly lower in cropland and plantation habitats than in primary vegetation and pasture. Soil properties influenced the abundance of soil biota in ways that differed among land uses, suggesting they shape both abundance and its response to land use.</p>                                Conclusions                 <p>Our results caution against assuming models or indicators derived from above-ground data can apply to soil assemblages and highlight the potential value of incorporating soil properties into biodiversity models.</p>", "keywords": ["Land-use intensity", "0106 biological sciences", "570", "Evolution", "[SDV]Life Sciences [q-bio]", "Organism abundance", "soil biodiversity", "01 natural sciences", "soil biota", "mixed-effects models", "Soil", "land\u2011use intensity", "Land-use", " Land-use intensity", " Mixed-effects models", " Organism abundance", " Soil biodiversity", " Soil biota", "land-use", "QH359-425", "Soil biota", "land-use intensity", "Biology", "Land-use", "QH540-549.5", "Ecosystem", "Soil Microbiology", "2. Zero hunger", "Ecology", "Research", "Biology and Life Sciences", "Biodiversity", "04 agricultural and veterinary sciences", "15. Life on land", "organism abundance", "Soil biodiversity", "Biota", "[SDV] Life Sciences [q-bio]", "Chemistry", "land\u2011use", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Human medicine", "Mixed-effects models", "mixed\u2011effects models"]}, "links": [{"href": "https://www.iris.unict.it/bitstream/20.500.11769/647835/1/12862_2022_Article_2089.pdf"}, {"href": "https://doi.org/10.1186/s12862-022-02089-4"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/BMC%20Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12862-022-02089-4", "name": "item", "description": "10.1186/s12862-022-02089-4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12862-022-02089-4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-11-17T00:00:00Z"}}, {"id": "10.1186/s12870-018-1411-5", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2018-09-20", "title": "Root inoculation with Azotobacter chroococcum 76A enhances tomato plants adaptation to salt stress under low N conditions", "description": "The emerging roles of rhizobacteria in improving plant nutrition and stress protection have great potential for sustainable use in saline soils. We evaluated the function of the salt-tolerant strain Azotobacter chroococcum 76A as stress protectant in an important horticultural crop, tomato. Specifically we hypothesized that treatment of tomato plants with A. chroococcum 76A could improve plant performance under salinity stress and sub-optimal nutrient regimen.Inoculation of Micro Tom tomato plants with A. chroococcum 76A increased numerous growth parameters and also conferred protective effects under both moderate (50\u00a0mM NaCl) and severe (100\u00a0mM NaCl) salt stresses. These benefits were mostly observed under reduced nutrient regimen and were less appreciable in optimal nitrogen conditions. Therefore, the efficiency of A. chroococcum 76A was found to be dependent on the nutrient status of the rhizosphere. The expression profiles of LEA genes indicated that A. chroococcum 76A treated plants were more responsive to stress stimuli when compared to untreated controls. However, transcript levels of key nitrogen assimilation genes revealed that the optimal nitrogen regimen, in combination with the strain A. chroococcum 76A, may have saturated plant's ability to assimilate nitrogen.Roots inoculation with A. chroococcum 76A tomato promoted tomato plant growth, stress tolerance and nutrient assimilation efficiency under moderate and severe salinity. Inoculation with beneficial bacteria such as A. chroococcum 76A may be an ideal solution for low-input systems, where environmental constraints and limited chemical fertilization may affect the potential yield.", "keywords": ["0301 basic medicine", "Salinity", "Nitrogen", "Physiological", "Plant Science", "Plant Roots", "Tomato", "Micro tom", "03 medical and health sciences", "Solanum lycopersicum", "Gene Expression Regulation", " Plant", "Azotobacter chroococcum; Micro tom; Plant nutrition; Rhizobacteria; Salinity; Tomato; Adaptation", " Physiological; Azotobacter; Gene Expression Regulation", " Plant; Lycopersicon esculentum; Nitrogen; Plant Leaves; Plant Roots; Rhizosphere; Salt Tolerance; Symbiosis; Plant Science", "Rhizobacteria", "Adaptation", "Lycopersicon esculentum", "Plant nutrition", "Symbiosis", "2. Zero hunger", "0303 health sciences", "Botany", "Plant", "Salt Tolerance", "15. Life on land", "Adaptation", " Physiological", "6. Clean water", "3. Good health", "Plant Leaves", "Gene Expression Regulation", "QK1-989", "Azotobacter", "Rhizosphere", "Azotobacter chroococcum", "Research Article"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/728072/2/VanOosten2018_Article_RootInoculationWithAzotobacter.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1186/s12870-018-1411-5.pdf"}, {"href": "https://doi.org/10.1186/s12870-018-1411-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/BMC%20Plant%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12870-018-1411-5", "name": "item", "description": "10.1186/s12870-018-1411-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12870-018-1411-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-09-20T00:00:00Z"}}, {"id": "10.1186/s12870-019-1987-4", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2019-10-07", "title": "Measurement of leaf lamina moisture with a low-cost electrical humidity sensor: case study on a wheat water-mutant", "description": "Abstract                                Background                 <p>The presence and persistence of water on the leaf can affect crop performance and thus might be a relevant trait to select for or against in breeding programmes. Low-cost, rapid and relatively simple methods are of significant importance for screening of large populations of plants for moisture analysis of detached leaves. Leaf moisture can be detected using an electric circuit, where the resistance changes are proportional to the moisture of the measured surface. In this study, we present a protocol to analyse genotypic differences through the electrical properties of living or stored tissues, performed using a commercial device. Expanded and non-expanded leaves were compared to determine the effects of leaf maturity on these data. Two wheat genotypes that differ in tissue affinity for bound water were used to define the influence of water status.</p>                                               Results                 <p>The device indirectly estimates leaf moisture content using two electrodes applied to the leaf lamina of fresh and stored samples. Single moisture readings using this moisture meter had mean execution time of ~\uffe2\uff80\uff891.0\uffe2\uff80\uff89min. Exponential associations provided good fits for relationships between the moisture meter reading (MMR) and the electrical resistance applied to the electrodes. MMR normalised for the water/ dry matter ratio (MMRnorm) was lower for mature leaves of the water-mutant than those of wild-type, for the fully hydrated fresh leaves. MMR of fully mature leaves when partially dehydrated and measured after 10\uffe2\uff80\uff89min at 27\uffe2\uff80\uff89\uffc2\uffb0C and 40% relative humidity was greater for the water-mutant than the wild-type.</p>                                               Conclusions                 <p>This case study provides a low-cost tool to compare electrical-resistance estimates of leaf moisture content, together with a promising and rapid phenotyping protocol for genotypic screening of wheat under standard environmental conditions. Measurement of changes in MMR with time, of fresh and partially dehydrated leaves, or of MMR normalised to tissue water content allowed for differentiation between the genotypes. Furthermore, the differences observed between genotypes that here relate particular to tissue affinity for bound water suggest that not only the free-water fraction, but also other water fractions, can affect these electrically estimated leaf moisture measures.</p>", "keywords": ["Wheat breeding", "0106 biological sciences", "0301 basic medicine", "2. Zero hunger", "Bound water; Electrical sensor; Leaf moisture; Wheat breeding; Humidity; Plant Leaves; Triticum; Water", "Methodology Article", "Leaf moisture", "Botany", "Water", "Humidity", "15. Life on land", "01 natural sciences", "Plant Leaves", "03 medical and health sciences", "Electrical sensor", "QK1-989", "Bound water", "Triticum"]}, "links": [{"href": "https://iris.unimore.it/bitstream/11380/1223165/2/rascio2019.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1186/s12870-019-1987-4.pdf"}, {"href": "https://doi.org/10.1186/s12870-019-1987-4"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/BMC%20Plant%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12870-019-1987-4", "name": "item", "description": "10.1186/s12870-019-1987-4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12870-019-1987-4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-10-07T00:00:00Z"}}, {"id": "10.1186/s12932-020-00066-8", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2020-02-14", "title": "Effects of metal cation substitution on hexavalent chromium reduction by green rust", "description": "Abstract<p>Chromium contamination is a serious environmental issue in areas affected by leather tanning and metal plating, and green rust sulfate has been tested extensively as a potential material for in situ chemical reduction of hexavalent chromium in groundwater. Reported products and mechanisms for the reaction have varied, most likely because of green rust\uffe2\uff80\uff99s layered structure, as reduction at outer and interlayer surfaces might produce different reaction products with variable stabilities. Based on studies of Cr(III) oxidation by biogenic Mn (IV) oxides, Cr mobility in oxic soils is controlled by the solubility of the Cr(III)-bearing phase. Therefore, careful engineering of green rust properties, i.e., crystal/particle size, morphology, structure, and electron availability, is essential for its optimization as a remediation reagent. In the present study, pure green rust sulfate and green rust sulfate with Al, Mg and Zn substitutions were synthesized and reacted with identical chromate (CrO42\uffe2\uff88\uff92) solutions. The reaction products were characterized by X-ray diffraction, pair distribution function analysis, X-ray absorption spectroscopy and transmission electron microscopy and treated with synthetic \uffce\uffb4-MnO2 to assess how easily Cr(III) in the products could be oxidized. It was found that Mg substitution had the most beneficial effect on Cr lability in the product. Less than 2.5% of the Cr(III) present in the reacted Mg-GR was reoxidized by \uffce\uffb4-MnO2 within 14\uffc2\uffa0days, and the particle structure and Cr speciation observed during X-ray scattering and absorption analyses of this product suggested that Cr(VI) was reduced in its interlayer. Reduction in the interlayer lead to the linkage of newly-formed Cr(III) to hydroxyl groups in the adjacent octahedral layers, which resulted in increased structural coherency between these layers, distinctive rim domains, sequestration of Cr(III) in insoluble Fe oxide bonding environments resistant to reoxidation and partial transformation to Cr(III)-substituted feroxyhyte. Based on the results of this study of hexavalent chromium reduction by green rust sulfate and other studies, further improvements can also be made to this remediation technique by reacting chromate with a large excess of green rust sulfate, which provides excess Fe(II) that can catalyze transformation to more crystalline iron oxides, and synthesis of the reactant under alkaline conditions, which has been shown to favor chromium reduction in the interlayer of Fe(II)-bearing phyllosilicates.</p>", "keywords": ["Chromium", "550", "Geography & travel", "Remediation", "02 engineering and technology", "910", "551", "01 natural sciences", "Chromium", " Green rust", " X-ray absorption spectroscopy", " Remediation", "remediation", "500 Naturwissenschaften und Mathematik::550 Geowissenschaften", " Geologie::551 Geologie", " Hydrologie", " Meteorologie", "GE1-350", "info:eu-repo/classification/ddc/910", "QD1-999", "0105 earth and related environmental sciences", "Green rust", "X-ray absorption spectroscopy", "540", "ddc:910", "6. Clean water", "Environmental sciences", "Chemistry", "green rust", "13. Climate action", "chromium", "500 Naturwissenschaften und Mathematik::540 Chemie::540 Chemie und zugeordnete Wissenschaften", "0210 nano-technology", "Research Article"]}, "links": [{"href": "https://eprints.whiterose.ac.uk/158695/1/s12932-020-00066-8.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1186/s12932-020-00066-8.pdf"}, {"href": "https://doi.org/10.1186/s12932-020-00066-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geochemical%20Transactions", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12932-020-00066-8", "name": "item", "description": "10.1186/s12932-020-00066-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12932-020-00066-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-02-14T00:00:00Z"}}, {"id": "10.1186/s12864-019-5692-3", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2019-05-02", "title": "Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains", "description": "Oenococcus oeni is a lactic acid bacteria species adapted to the low pH, ethanol-rich environments of wine and cider fermentation, where it performs the crucial role of malolactic fermentation. It has a small genome and has lost the mutS-mutL DNA mismatch repair genes, making it a hypermutable and highly specialized species. Two main lineages of strains, named groups A and B, have been described to date, as well as other subgroups correlated to different types of wines or regions. A third group 'C' has also been hypothesized based on sequence analysis, but it remains controversial. In this study we have elucidated the species population structure by sequencing 14 genomes of new strains isolated from cider and kombucha and performing comparative genomics analyses.Sequence-based phylogenetic trees confirmed a population structure of 4 clades: The previously identified A and B, a third group 'C' consisting of the new cider strains and a small subgroup of wine strains previously attributed to group B, and a fourth group 'D' exclusively represented by kombucha strains. A pair of complete genomes from group C and D were compared to the circularized O. oeni PSU-1 strain reference genome and no genomic rearrangements were found. Phylogenetic trees, K-means clustering and pangenome gene clusters evidenced the existence of smaller, specialized subgroups of strains. Using the pangenome, genomic differences in stress resistance and biosynthetic pathways were found to uniquely distinguish the C and D clades.The obtained results, including the additional cider and kombucha strains, firmly established the O. oeni population structure. Group C does not appear as fully domesticated as group A to wine, but showed several unique patterns which may be due to ongoing specialization to the cider environment. Group D was shown to be the most divergent member of O. oeni to date, appearing as the closest to a pre-domestication state of the species.", "keywords": ["0301 basic medicine", "570", "Wine", "QH426-470", "Pan-genome", "Industrial microbiology", "630", "03 medical and health sciences", "Lactic acid bacteria", "Genetics", "[SDV.BV]Life Sciences [q-bio]/Vegetal Biology", "[SDV.BV] Life Sciences [q-bio]/Vegetal Biology", "Oenococcus", "Phylogeny", "2. Zero hunger", "0303 health sciences", "Genome", "Whole Genome Sequencing", "Comparative genomics", "Bacterial", "Phylogenomics", "Kombucha Tea", "Biodiversity", "15. Life on land", "Malus", "Oenococcus oeni", "TP248.13-248.65", "Genome", " Bacterial", "Biotechnology", "Research Article"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1186/s12864-019-5692-3.pdf"}, {"href": "https://doi.org/10.1186/s12864-019-5692-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/BMC%20Genomics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12864-019-5692-3", "name": "item", "description": "10.1186/s12864-019-5692-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12864-019-5692-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-05-02T00:00:00Z"}}, {"id": "10.1186/s12916-021-01913-w", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2021-02-11", "title": "High intake of vegetables is linked to lower white blood cell profile and the effect is mediated by the gut microbiome", "description": "Abstract                 Background                 <p>Chronic inflammation, which can be modulated by diet, is linked to high white blood cell counts and correlates with higher cardiometabolic risk and risk of more severe infections, as in the case of COVID-19.</p>                                Methods                 <p>Here, we assessed the association between white blood cell profile (lymphocytes, basophils, eosinophils, neutrophils, monocytes and total white blood cells) as markers of chronic inflammation, habitual diet and gut microbiome composition (determined by sequencing of the 16S RNA) in 986 healthy individuals from the PREDICT-1 nutritional intervention study. We then investigated whether the gut microbiome mediates part of the benefits of vegetable intake on lymphocyte counts.</p>                                Results                 <p>Higher levels of white blood cells, lymphocytes and basophils were all significantly correlated with lower habitual intake of vegetables, with vegetable intake explaining between 3.59 and 6.58% of variation in white blood cells after adjusting for covariates and multiple testing using false discovery rate (q\uffe2\uff80\uff89&lt;\uffe2\uff80\uff890.1). No such association was seen with fruit intake. A mediation analysis found that 20.00% of the effect of vegetable intake on lymphocyte counts was mediated by one bacterial genus, Collinsella, known to increase with the intake of processed foods and previously associated with fatty liver disease. We further correlated white blood cells to other inflammatory markers including IL6 and GlycA, fasting and post-prandial glucose levels and found a significant relationship between inflammation and diet.</p>                                Conclusion                 <p>A habitual diet high in vegetables, but not fruits, is linked to a lower inflammatory profile for white blood cells, and a fifth of the effect is mediated by the genus Collinsella.</p>                                Trial registration                 <p>The ClinicalTrials.gov registration identifier is NCT03479866.</p>", "keywords": ["Adult", "Male", "0301 basic medicine", "610", "Leukocyte Count", "03 medical and health sciences", "RNA", " Ribosomal", " 16S", "Leukocytes", "Humans", "Lymphocyte Count", "White blood cell", " Gut microbiome", " Diet", " Vegetable intake", " Chronic inflammation", "White blood cell", "Clostridium", "2. Zero hunger", "Gut microbiome", "Clostridiales", "0303 health sciences", "Mediation Analysis", "Interleukin-6", "R", "COVID-19", "Chronic inflammation; Diet; Gut microbiome; Vegetable intake; White blood cell", "Chronic inflammation", "General Medicine", "Fasting", "Middle Aged", "Diet", "Gastrointestinal Microbiome", "3. Good health", "Actinobacteria", "Vegetable intake", "Fruit", "Medicine", "Female", "Biomarkers", "Research Article"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/1101012/2/s12916-021-01913-w.pdf"}, {"href": "https://iris.unitn.it/bitstream/11572/329112/1/s12916-021-01913-w.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1186/s12916-021-01913-w.pdf"}, {"href": "https://doi.org/10.1186/s12916-021-01913-w"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/BMC%20Medicine", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12916-021-01913-w", "name": "item", "description": "10.1186/s12916-021-01913-w", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12916-021-01913-w"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-11T00:00:00Z"}}, {"id": "10.1186/s13568-024-01764-7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2024-09-28", "title": "Metagenomic analyses of a consortium for the bioremediation of hydrocarbons polluted soils", "description": "Abstract<p>A bacterial consortium was isolated from a soil in Noblejas (Toledo, Spain) with a long history of mixed hydrocarbons pollution, by enrichment cultivation. Serial cultures of hydrocarbons polluted soil samples were grown in a minimal medium using diesel (1\uffc2\uffa0mL/L) as the sole carbon and energy source. The bacterial composition of the Noblejas Consortium (NC) was determined by sequencing 16S rRNA gene amplicon libraries. The consortium contained around 50 amplicon sequence variants (ASVs) and the major populations belonged to the genera Pseudomonas, Enterobacter, Delftia, Stenotrophomonas, Achromobacter, Acinetobacter, Novosphingobium, Allorhizobium-Neorhizobium-Rhizobium, Ochrobactrum and Luteibacter. All other genera were below 1%. Metagenomic analysis of NC has shown a high abundance of genes encoding enzymes implicated in aliphatic and (poly) aromatic hydrocarbons degradation, and almost all pathways for hydrocarbon degradation are represented. Metagenomic analysis has also allowed the construction of metagenome assembled genomes (MAGs) for the major players of NC. Metatranscriptomic analysis has shown that several of the ASVs are implicated in hydrocarbon degradation, being Pseudomonas, Acinetobacter and Delftia the most active populations.</p", "keywords": ["metagenomics", "Bacterial consortium; Bioremediation; Metagenomics; Metatranscriptomics; Total petroleum hydrocarbons", "metatranscriptomics", "Bacterial consortium", "Biolog\u00eda y Biomedicina / Biolog\u00eda", "Microbiology", "QR1-502", "Total petroleum hydrocarbons", "total petroleum hydrocarbons", "bioremediation", "Original Article", "Metagenomics", "Bioremediation", "TP248.13-248.65", "Metatranscriptomics", "Biotechnology"]}, "links": [{"href": "https://doi.org/10.1186/s13568-024-01764-7"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/AMB%20Express", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s13568-024-01764-7", "name": "item", "description": "10.1186/s13568-024-01764-7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s13568-024-01764-7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-09-28T00:00:00Z"}}, {"id": "10.1186/s13570-020-00190-1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2021-02-27", "title": "Understanding \u2018culture\u2019 of pastoralism and \u2018modern development\u2019 in Thar: Muslim pastoralists of north-west Rajasthan, India", "description": "Abstract<p>The paper attempts to understand the relation between pastoral cultures and irrigation-based intensive farming regimes promoted by modern development represented by the Indira Gandhi Canal (IGNP) in western Rajasthan. Participant observation and development practice engagement with pastoral communities over the past three decades give an opportunity to reflect on epistemic rationality that constitutes the discourse of modern development, formal statecraft of technocracy, and rule by experts. Historical markers of pastoralism in the interconnected regions of north-west Rajasthan and bordering regions of Multan and Bahawalpur in Pakistan are situated to trace thelonguee dureeof pastoral life systems in the Thar desert region. This oscillation between enhanced moisture regimes following inundation and increased desiccation of a moisture-deficient arid region has been at the core of sustaining the culture of pastoralism among semi-nomadic pastoralists of Muslim communities in north-west Rajasthan. The IGNP canal produces a space for modern development that opens up irrigated farming and an intensive natural resource use regime. This political economy of the IGNP canal systematically marginalizes pastoral natural resource use that was ecologically embedded. The varied experiences of adaptation responses by pastoral communities to this state-led marginalization points to the tenacious ability of pastoralism to continually adapt to the radically changing ecology. The paper argues for a complementarity of pastoral and farming use as an inclusive development vision. Beginnings can be made by a compassionate engagement with cultures of pastoralism that are endowed with resilience rooted in a historically constituted rationality to adapt and innovate with changing times. This may hold cues for a sustainable future of Thar.</p", "keywords": ["2. Zero hunger", "05 social sciences", "0211 other engineering and technologies", "0507 social and economic geography", "1. No poverty", "02 engineering and technology", "15. Life on land", "16. Peace & justice", "SF1-1100", "Animal culture", "12. Responsible consumption", "pastoral resilience", "Sufi Mysticism", "13. Climate action", "IGNP canal", "11. Sustainability", "Bikaner"], "contacts": [{"organization": "Rahul Ghai", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1186/s13570-020-00190-1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Pastoralism", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s13570-020-00190-1", "name": "item", "description": "10.1186/s13570-020-00190-1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s13570-020-00190-1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-27T00:00:00Z"}}, {"id": "10.1186/s13750-022-00257-z", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2022-01-31", "title": "What are the effects of herbivore diversity on tundra ecosystems? A systematic review protocol", "description": "Abstract                 Background                 <p>Changes in the diversity of herbivore communities can strongly influence the functioning of northern ecosystems. Different herbivores have different impacts on ecosystems because of differences in their diets, behaviour and energy requirements. The combined effects of different herbivores can in some cases compensate each other but lead to stronger directional changes elsewhere. However, the diversity of herbivore assemblages has until recently been a largely overlooked dimension of plant\uffe2\uff80\uff93herbivore interactions. Given the ongoing environmental changes in tundra ecosystems, with increased influx of boreal species and changes in the distribution and abundance of arctic herbivores, a better understanding of the consequences of changes in the diversity of herbivore assemblages is needed. This protocol presents the methodology that will be used in a systematic review on the effects of herbivore diversity on different processes, functions and properties of tundra ecosystems.</p>                                Methods                 <p>This systematic review builds on an earlier systematic map on herbivory studies in the Arctic that identified a relatively large number of studies assessing the effects of multiple herbivores. The systematic review will include primary field studies retrieved from databases, search engines and specialist websites, that compare responses of tundra ecosystems to different levels of herbivore diversity, including both vertebrate and invertebrate herbivores. We will use species richness of herbivores or the richness of functional groups of herbivores as a measure of the diversity of the herbivore assemblages. Studies will be screened in three stages: title, abstract and full text, and inclusion will follow clearly identified eligibility criteria, based on their target population, exposure, comparator and study design. The review will cover terrestrial Arctic ecosystems including the forest-tundra ecotone. Potential outcomes will include multiple processes, functions and properties of tundra ecosystems related to primary productivity, nutrient cycling, accumulation and dynamics of nutrient pools, as well as the impacts of herbivores on other organisms. Studies will be critically appraised for validity, and where studies report similar outcomes, meta-analysis will be performed.</p>", "keywords": ["0106 biological sciences", "Browsing", "Plant\u2013herbivore interaction", "Systematic Review Protocol", "15. Life on land", "01 natural sciences", "Herbivore assemblage", "Environmental sciences", "Grazing", "Ecology", " evolutionary biology", "Defoliation", "13. Climate action", "Ecosystem function", "GE1-350", "14. Life underwater", "Species richness"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1186/s13750-022-00257-z.pdf"}, {"href": "https://doi.org/10.1186/s13750-022-00257-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Evidence", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s13750-022-00257-z", "name": "item", "description": "10.1186/s13750-022-00257-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s13750-022-00257-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-31T00:00:00Z"}}, {"id": "10.1186/s40100-019-0133-9", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2019-07-14", "title": "Partnering for sustainability in agri-food supply chains: the case of Barilla Sustainable Farming in the Po Valley", "description": "Abstract The objective of the paper is to understand the process of designing a multi-stakeholder partnership in the adoption of sustainable innovations in value chains. More specifically, the focus is on the design of feasible types of horizontal agreements and contractual formulas to be implemented in the agri-food supply chain in order to introduce sustainable agricultural practices. To this purpose, the Barilla Sustainable Farming initiative, which is currently in the first phase of designing an MSP, is used as a case study.", "keywords": ["HD9000-9495", "2. Zero hunger", "330", "ddc:330", "Nutrition. Foods and food supply", "05 social sciences", "Supply chain protocols", "Horizontal agreements", "Agricultural industries", "Contract design", "01 natural sciences", "12. Responsible consumption", "Sustainability", "Crop rotation", "11. Sustainability", "0502 economics and business", "TX341-641", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1186/s40100-019-0133-9.pdf"}, {"href": "https://doi.org/10.1186/s40100-019-0133-9"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agricultural%20and%20Food%20Economics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40100-019-0133-9", "name": "item", "description": "10.1186/s40100-019-0133-9", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40100-019-0133-9"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-07-14T00:00:00Z"}}, {"id": "10.1186/s13595-024-01238-7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2024-06-04", "title": "There is a need to better take into account forest soils in the planned soil monitoring law of the European Union", "description": "Abstract                 Key message                 <p>A Soil Monitoring Law to improve soil health across all land uses has been proposed by the European Commission. As forests soils have different chemical and physical properties as well as biogeochemical dynamics compared to agricultural land, they also face different challenges in maintaining and restoring soil health. Examples are soil acidification, eutrophication by atmospheric deposition, responses to climate change, and loss of biodiversity. Therefore, we propose forest soil specific health descriptors and thresholds based on experience and knowledge from existing long-term monitoring programs.</p>", "keywords": ["0106 biological sciences", "2. Zero hunger", "ICP Forests", "soil health", "tresholds", "Forestry", "ICP forests", "Forest soil monitoring", "SD1-669.5", "15. Life on land", "01 natural sciences", "indicators", "630", "forest floor", "forest soil monitoring", "13. Climate action", "Soil health", "11. Sustainability", "Indicators", "Thresholds", "Forest floor", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1186/s13595-024-01238-7.pdf"}, {"href": "https://doi.org/10.1186/s13595-024-01238-7"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Annals%20of%20Forest%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s13595-024-01238-7", "name": "item", "description": "10.1186/s13595-024-01238-7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s13595-024-01238-7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-06-04T00:00:00Z"}}, {"id": "10.1186/s40168-018-0572-7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:38Z", "type": "Journal Article", "created": "2018-10-18", "title": "Consistent responses of soil microbial taxonomic and functional attributes to mercury pollution across China", "description": "The ecological consequences of mercury (Hg) pollution-one of the major pollutants worldwide-on microbial taxonomic and functional attributes remain poorly understood and largely unexplored. Using soils from two typical Hg-impacted regions across China, here, we evaluated the role of Hg pollution in regulating bacterial abundance, diversity, and co-occurrence network. We also investigated the associations between Hg contents and the relative abundance of microbial functional genes by analyzing the soil metagenomes from a subset of those sites.We found that soil Hg largely influenced the taxonomic and functional attributes of microbial communities in the two studied regions. In general, Hg pollution was negatively related to bacterial abundance, but positively related to the diversity of bacteria in two separate regions. We also found some consistent associations between soil Hg contents and the community composition of bacteria. For example, soil total Hg content was positively related to the relative abundance of Firmicutes and Bacteroidetes in both paddy and upland soils. In contrast, the methylmercury (MeHg) concentration was negatively correlated to the relative abundance of Nitrospirae in the two types of soils. Increases in soil Hg pollution correlated with drastic changes in the relative abundance of ecological clusters within the co-occurrence network of bacterial communities for the two regions. Using metagenomic data, we were also able to detect the effect of Hg pollution on multiple functional genes relevant to key soil processes such as element cycles and Hg transformations (e.g., methylation and reduction).Together, our study provides solid evidence that Hg pollution has predictable and significant effects on multiple taxonomic and functional attributes including bacterial abundance, diversity, and the relative abundance of ecological clusters and functional genes. Our results suggest an increase in soil Hg pollution linked to human activities will lead to predictable shifts in the taxonomic and functional attributes in the Hg-impacted areas, with potential implications for sustainable management of agricultural ecosystems and elsewhere.", "keywords": ["0301 basic medicine", "570", "China", "550", "Co-occurrence network", "Firmicutes", "333", "12. Responsible consumption", "Microbial ecology", "Soil", "03 medical and health sciences", "XXXXXX - Unknown", "Soil Pollutants", "Soil Microbiology", "2. Zero hunger", "Bacteroidetes", "Research", "Microbiota", "QR100-130", "Biodiversity", "Mercury", "Methylmercury Compounds", "15. Life on land", "Mercury pollution", "6. Clean water", "13. Climate action", "Soil microbial community", "Metagenome", "Metagenomics", "Functional gene", "Environmental Pollution", "Environmental Monitoring"]}, "links": [{"href": "https://doi.org/10.1186/s40168-018-0572-7"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40168-018-0572-7", "name": "item", "description": "10.1186/s40168-018-0572-7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40168-018-0572-7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-10-18T00:00:00Z"}}, {"id": "10.1186/s40168-021-01131-9", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:39Z", "type": "Journal Article", "created": "2021-10-14", "title": "Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity", "description": "AbstractBackground<p>The microorganisms that inhabit food processing environments (FPE) can strongly influence the associated food quality and safety. In particular, the possibility that FPE may act as a reservoir of antibiotic-resistant microorganisms, and a hotspot for the transmission of antibiotic resistance genes (ARGs) is a concern in meat processing plants. Here, we monitor microbial succession and resistome dynamics relating to FPE through a detailed analysis of a newly opened pork cutting plant over 1.5 years of activity.</p>Results<p>We identified a relatively restricted principal microbiota dominated byPseudomonasduring the first 2 months, while a higher taxonomic diversity, an increased representation of other taxa (e.g.,Acinetobacter,Psychrobacter), and a certain degree of microbiome specialization on different surfaces was recorded later on. An increase in total abundance, alpha diversity, and \uffce\uffb2-dispersion of ARGs, which were predominantly assigned toAcinetobacterand associated with resistance to certain antimicrobials frequently used on pig farms of the region, was detected over time. Moreover, a sharp increase in the occurrence of extended-spectrum \uffce\uffb2-lactamase-producingEnterobacteriaceaeand vancomycin-resistantEnterococcaceaewas observed when cutting activities started. ARGs associated with resistance to \uffce\uffb2-lactams, tetracyclines, aminoglycosides, and sulphonamides frequently co-occurred, and mobile genetic elements (i.e., plasmids, integrons) and lateral gene transfer events were mainly detected at the later sampling times in drains.</p>Conclusions<p>The observations made suggest that pig carcasses were a source of resistant bacteria that then colonized FPE and that drains, together with some food-contact surfaces, such as equipment and table surfaces, represented a reservoir for the spread of ARGs in the meat processing facility.</p>", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Bacteria", "Food Handling", "Swine", "Tecnolog\u00eda de los alimentos", "Research", "QR100-130", "610", "Food processing environments", "Antimicrobial resistance", "Gen\u00e9tica", "630", "Anti-Bacterial Agents", "Microbial ecology", "Red Meat", "03 medical and health sciences", "Genes", " Bacterial", "Pork Meat", "Animals", "Metagenomics"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1186/s40168-021-01131-9.pdf"}, {"href": "https://doi.org/10.1186/s40168-021-01131-9"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40168-021-01131-9", "name": "item", "description": "10.1186/s40168-021-01131-9", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40168-021-01131-9"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-14T00:00:00Z"}}, {"id": "10.1186/s40168-022-01405-w", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:39Z", "type": "Journal Article", "created": "2022-12-12", "title": "The global distribution and environmental drivers of the soil antibiotic resistome", "description": "Abstract                 Background                 <p>Little is known about the global distribution and environmental drivers of key microbial functional traits such as antibiotic resistance genes (ARGs). Soils are one of Earth\uffe2\uff80\uff99s largest reservoirs of ARGs, which are integral for soil microbial competition, and have potential implications for plant and human health. Yet, their diversity and global patterns remain poorly described. Here, we analyzed 285 ARGs in soils from 1012 sites across all continents and created the first global atlas with the distributions of topsoil ARGs.</p>                                Results                 <p>We show that ARGs peaked in high latitude cold and boreal forests. Climatic seasonality and mobile genetic elements, associated with the transmission of antibiotic resistance, were also key drivers of their global distribution. Dominant ARGs were mainly related to multidrug resistance genes and efflux pump machineries. We further pinpointed the global hotspots of the diversity and proportions of soil ARGs.</p>                                Conclusions                 <p>Together, our work provides the foundation for a better understanding of the ecology and global distribution of the environmental soil antibiotic resistome.</p>", "keywords": ["Ecolog\u00eda (Biolog\u00eda)", "0301 basic medicine", "SDG-03: Good health and well-being", "550", "Antibiotic resistance", "Edafolog\u00eda (Biolog\u00eda)", "Antibiotic resistance genes (ARGs)", "910", "http://metadata.un.org/sdg/3", "631.4", "Microbial ecology", "2417.14 Gen\u00e9tica Vegetal", "Soil", "03 medical and health sciences", "XXXXXX - Unknown", "Global scale", "Humans", "Global change", "SCALE", "Ensure healthy lives and promote well-being for all at all ages", "2. Zero hunger", "0303 health sciences", "Ecology", "Research", "QR100-130", "Human health", "15. Life on land", "Gen\u00e9tica", "Anti-Bacterial Agents", "3. Good health", "Phenotype", "Mobile genetic elements", "13. Climate action", "BACTERIA", "2511.02 Biolog\u00eda de Suelos", "RESISTANCE GENES"]}, "links": [{"href": "https://doi.org/10.1186/s40168-022-01405-w"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40168-022-01405-w", "name": "item", "description": "10.1186/s40168-022-01405-w", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40168-022-01405-w"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-07-11T00:00:00Z"}}, {"id": "10.1186/s40793-021-00386-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:39Z", "type": "Journal Article", "created": "2021-08-26", "title": "Isoprene-degrading bacteria associated with the phyllosphere of Salix fragilis, a high isoprene-emitting willow of the northern hemisphere", "description": "AbstractBackground<p>Isoprene accounts for about half of total biogenic volatile organic compound emissions globally, and as a climate active gas it plays a significant and varied role in atmospheric chemistry. Terrestrial plants are the largest source of isoprene, with willow (Salix) making up one of the most active groups of isoprene producing trees. Bacteria act as a biological sink for isoprene and those bacteria associated with high isoprene-emitting trees may provide further insight into its biodegradation.</p>Results<p>A DNA-SIP experiment incubating willow (Salix fragilis) leaves with13C-labelled isoprene revealed an abundance ofComamonadaceae, Methylobacterium, MycobacteriumandPolaromonasin the isoprene degrading community when analysed by 16S rRNA gene amplicon sequencing. Metagenomic analysis of13C-enriched samples confirmed the abundance ofComamonadaceae, Acidovorax, Polaromonas, VariovoraxandRamlibacter. MycobacteriumandMethylobacteriumwere also identified after metagenomic analysis and aMycobacteriummetagenome-assembled genome (MAG) was recovered. This contained two complete isoprene degradation metabolic gene clusters, along with a propane monooxygenase gene cluster. Analysis of the abundance of the alpha subunit of the isoprene monooxygenase,isoA,in unenriched DNA samples revealed that isoprene degraders associated with willow leaves are abundant, making up nearly 0.2% of the natural bacterial community.</p>Conclusions<p>Analysis of the isoprene degrading community associated with willow leaves using DNA-SIP and focused metagenomics techniques enabled recovery of the genome of an active isoprene-degradingMycobacteriumspecies and provided valuable insight into bacteria involved in degradation of isoprene on the leaves of a key species of isoprene-emitting tree in the northern hemisphere.</p>", "keywords": ["Salix fragilis", "2. Zero hunger", "0301 basic medicine", "570", "0303 health sciences", "isoprene monooxygenase", "Isoprene", "Climate", "isoA", "15. Life on land", "Microbiology", "630", "QR1-502", "6. Clean water", "Environmental sciences", "03 medical and health sciences", "Willow tree", "13. Climate action", "Isoprene monooxygenase", "GE1-350", "willow tree", "isoprene", "climate", "DNA stable isotope probing", "Research Article"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/81258/1/Published_Version.pdf"}, {"href": "https://link.springer.com/content/pdf/10.1186/s40793-021-00386-x.pdf"}, {"href": "https://doi.org/10.1186/s40793-021-00386-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40793-021-00386-x", "name": "item", "description": "10.1186/s40793-021-00386-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40793-021-00386-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-08-26T00:00:00Z"}}, {"id": "10.1186/s40537-023-00735-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:39Z", "type": "Journal Article", "created": "2023-04-29", "title": "Transfer learning approach based on satellite image time series for the crop classification problem", "description": "Abstract<p>This paper presents a transfer learning approach to the crop classification problem based on time series of images from the Sentinel-2 dataset labeled for two regions: Brittany (France) and Vojvodina (Serbia). During preprocessing, cloudy images are removed from the input data, the time series are interpolated over the time dimension, and additional remote sensing indices are calculated. We chose TransformerEncoder as the base model for knowledge transfer from source to target domain with French and Serbian data, respectively. Even more, the accuracy of the base model with the preprocessing step is improved by 2% when trained and evaluated on the French dataset. The transfer learning approach with fine-tuning of the pre-trained weights on the French dataset outperformed all other methods in terms of overall accuracy 0.94 and mean class recall 0.907 on the Serbian dataset. Our partially fine-tuned model improved recall of crop types that were poorly classified by the base model. In the case of sugar beet, class recall is improved by 85.71%.</p", "keywords": ["Domain adaptation", "Computer engineering. Computer hardware", "0211 other engineering and technologies", "Attention mechanism", "Information technology", "QA75.5-76.95", "04 agricultural and veterinary sciences", "02 engineering and technology", "Remote sensing", "T58.5-58.64", "Transfer learning", "Crop classification", "TK7885-7895", "Encoder\u2013decoder architecture", "Electronic computers. Computer science", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://doi.org/10.1186/s40537-023-00735-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Big%20Data", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40537-023-00735-2", "name": "item", "description": "10.1186/s40537-023-00735-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40537-023-00735-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-04-29T00:00:00Z"}}, {"id": "10.1186/s40623-018-0795-7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:39Z", "type": "Journal Article", "created": "2018-02-12", "title": "Detection of water vapor time variations associated with heavy rain in northern Italy by geodetic and low-cost GNSS receivers", "description": "Abstract GNSS atmospheric water vapor monitoring is not yet routinely performed in Italy, particularly at the regional scale. However, in order to support the activities of regional environmental protection agencies, there is a widespread need to improve forecasting of heavy rainfall events. Localized convective rain forecasts are often misplaced in space and/or time, causing inefficiencies in risk mitigation activities. Water vapor information can be used to improve these forecasts. In collaboration with the environmental protection agencies of the Lombardy and Piedmont regions in northern Italy, we have collected and processed GNSS and weather station datasets for two heavy rain events: one which was spatially widespread, and another which was limited to few square kilometers. The time variations in water vapor derived from a regional GNSS network with inter-station distances on the order of 50\u00a0km were analyzed, and the relationship between the time variations and the evolution of the rain events was evaluated. Results showed a signature associated with the passage of the widespread rain front over each GNSS station within the area of interest. There was a peak in the precipitable water vapor value when the heavier precipitation area surrounded the station, followed by a steep decrease (5\u201310\u00a0mm in about 1\u00a0h) as the rainclouds moved past the station. The smaller-scale event, a convective storm a few kilometers in extent, was not detected by the regional GNSS network, but strong fluctuations in water vapor were detected by a low-cost station located near the area of interest.", "keywords": ["QB275-343", "QE1-996.5", "Intense rainfall", "GNSS meteorology; Intense rainfall; PWV variations; Geology; Space and Planetary Science", "0211 other engineering and technologies", "Geology", "02 engineering and technology", "01 natural sciences", "G", "GNSS meteorology", "13. Climate action", "Geography. Anthropology. Recreation", "PWV variations", "Geodesy", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://re.public.polimi.it/bitstream/11311/1069376/1/s40623-018-0795-7.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1186/s40623-018-0795-7.pdf"}, {"href": "https://doi.org/10.1186/s40623-018-0795-7"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Earth%2C%20Planets%20and%20Space", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40623-018-0795-7", "name": "item", "description": "10.1186/s40623-018-0795-7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40623-018-0795-7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-02-12T00:00:00Z"}}, {"id": "10.1186/s40793-020-00354-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:39Z", "type": "Report", "created": "2020-03-02", "title": "Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics", "description": "Abstract                 Background                 <p>Anaerobic digestion (AD) of protein-rich grass silage was performed in experimental two-stage two-phase biogas reactor systems at low vs. increased organic loading rates (OLRs) under mesophilic (37\uffe2\uff80\uff89\uffc2\uffb0C) and thermophilic (55\uffe2\uff80\uff89\uffc2\uffb0C) temperatures. To follow the adaptive response of the biomass-attached cellulolytic/hydrolytic biofilms at increasing ammonium/ammonia contents, genome-centered metagenomics and transcriptional profiling based on metagenome assembled genomes (MAGs) were conducted.</p>                                Results                 <p>In total, 78 bacterial and archaeal MAGs representing the most abundant members of the communities, and featuring defined quality criteria were selected and characterized in detail. Determination of MAG abundances under the tested conditions by mapping of the obtained metagenome sequence reads to the MAGs revealed that MAG abundance profiles were mainly shaped by the temperature but also by the OLR. However, the OLR effect was more pronounced for the mesophilic systems as compared to the thermophilic ones. In contrast, metatranscriptome mapping to MAGs subsequently normalized to MAG abundances showed that under thermophilic conditions, MAGs respond to increased OLRs by shifting their transcriptional activities mainly without adjusting their proliferation rates. This is a clear difference compared to the behavior of the microbiome under mesophilic conditions. Here, the response to increased OLRs involved adjusting of proliferation rates and corresponding transcriptional activities. The analysis led to the identification of MAGs positively responding to increased OLRs. The most outstanding MAGs in this regard, obviously well adapted to higher OLRs and/or associated conditions, were assigned to the order Clostridiales (Acetivibrio sp.) for the mesophilic biofilm and the orders Bacteroidales (Prevotella sp. and an unknown species), Lachnospirales (Herbinix sp. and Kineothrix sp.) and Clostridiales (Clostridium sp.) for the thermophilic biofilm. Genome-based metabolic reconstruction and transcriptional profiling revealed that positively responding MAGs mainly are involved in hydrolysis of grass silage, acidogenesis and / or\uffc2\uffa0acetogenesis.</p>                                Conclusions                 <p>An integrated -omics approach enabled the identification of new AD biofilm keystone species featuring outstanding performance under stress conditions such as increased OLRs. Genome-based knowledge on the metabolic potential and transcriptional activity of responsive microbiome members will contribute to the development of improved microbiological AD management strategies for biomethanation of renewable biomass.</p>", "keywords": ["Integrated -omics", "Bioconversion", "0301 basic medicine", "570", "Polyomics", "Integrated-omics", "Biogas", "Microbiology", "7. Clean energy", "03 medical and health sciences", "Anaerobic digestion", "GE1-350", "2. Zero hunger", "0303 health sciences", "Metagenome assembled genomes", "Microbial community structure", "15. Life on land", "QR1-502", "6. Clean water", "3. Good health", "Environmental sciences", "Metagenome assembled genomes", " Integrated -omics", " Polyomics", " Anaerobic digestion", " Biogas", " Bioconversion", " Microbial community structure", " Methane", " Metabolic activity", "13. Climate action", "Metabolic activity", "Methane", "Research Article"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1186/s40793-020-00354-x.pdf"}, {"href": "https://doi.org/10.1186/s40793-020-00354-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40793-020-00354-x", "name": "item", "description": "10.1186/s40793-020-00354-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40793-020-00354-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-03-02T00:00:00Z"}}, {"id": "10.1186/s40793-021-00381-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:39Z", "type": "Journal Article", "created": "2021-02-10", "title": "Soil, senescence and exudate utilisation: characterisation of the\u00a0Paragon var. spring bread wheat root microbiome", "description": "Abstract<p>Conventional methods of agricultural pest control and crop fertilisation are contributing to a crisis of biodiversity loss, biogeochemical cycle dysregulation, and ecosystem collapse. Thus, we must find ecologically responsible means to control disease and promote crop yields. The root-associated microbiome may contribute to this goal as microbes can aid plants with disease suppression, abiotic stress relief, and nutrient bioavailability. We applied 16S rRNA gene &amp; fungal 18S rRNA gene (ITS2 region) amplicon sequencing to profile the diversity of the bacterial, archaeal &amp; fungal communities associated with the roots of UK elite spring bread wheat varietyTriticum aestivum var.Paragon in different soils and developmental stages. This revealed that community composition shifted significantly for all three groups across compartments. This shift was most pronounced for bacteria and fungi, while we observed weaker selection on the ammonia oxidising archaea-dominated archaeal community. Across multiple soil types we found that soil inoculum was a significant driver of endosphere community composition, however several bacterial families were identified as core enriched taxa in all soil conditions. The most abundant of these wereStreptomycetaceaeandBurkholderiaceae.Moreover, as the plants senesce, both families were reduced in abundance, indicating that input from the living plant was required to maintain their abundance in the endosphere. To understand which microbes are using wheat root exudates in the rhizosphere, root exudates were labelled in a13CO2DNA stable isotope probing experiment. This shows that bacterial taxa within theBurkholderiaceaefamily among other core enriched taxa, such asPseudomonadaceae,were able to use root exudates butStreptomycetaceaewere not. Overall, this work provides a better understanding of the wheat microbiome, including the endosphere community. Understanding crop microbiome formation will contribute to ecologically responsible methods for yield improvement and biocontrol in the future.</p>", "keywords": ["2. Zero hunger", "0301 basic medicine", "570", "0303 health sciences", "Exudate", "15. Life on land", "Senescence", "Microbiology", "630", "QR1-502", "Environmental sciences", "03 medical and health sciences", "Root", "Wheat", "GE1-350", "Microbiome", "Endosphere", "Research Article"]}, "links": [{"href": "http://oro.open.ac.uk/77831/1/40793_2021_Article_381.pdf"}, {"href": "https://ueaeprints.uea.ac.uk/id/eprint/80327/1/Published_Version.pdf"}, {"href": "https://link.springer.com/content/pdf/10.1186/s40793-021-00381-2.pdf"}, {"href": "https://doi.org/10.1186/s40793-021-00381-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40793-021-00381-2", "name": "item", "description": "10.1186/s40793-021-00381-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40793-021-00381-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-09T00:00:00Z"}}, {"id": "10.1201/9781003106524-10", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:40Z", "type": "Report", "created": "2022-01-21", "title": "Bioactive Peptides in Pulses", "description": "Pulse proteins are a source of a range of biologically active substances which are inactive within the sequence of native protein but can be released by enzymatic hydrolysis, fermentation, or germination. Pulse-borne bioactive peptides have been found to exhibit various in vitro activities, such as antihypertensive, antioxidant, anticholesterolemic, antidiabetic, and antimicrobial. In addition, several peptides have multifunction properties, especially antihypertensive and antioxidant. Such bioactive peptides may find use in the treatment of hypertension, diabetes, high cholesterol, and oxidative stress. They can be also applied as natural ingredients in food products to increase shelf life. These bioactive peptides may be used in the formulation of functional foods, nutraceuticals, and natural drugs because of their health benefit effects.", "keywords": ["2. Zero hunger", "peptides", "610", "fermentation (alteration)", "health benefits", "3. Good health"]}, "links": [{"href": "https://doi.org/10.1201/9781003106524-10"}, {"rel": "self", "type": "application/geo+json", "title": "10.1201/9781003106524-10", "name": "item", "description": "10.1201/9781003106524-10", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1201/9781003106524-10"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-21T00:00:00Z"}}, {"id": "10.1263/jbb.102.157", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-05T16:19:40Z", "type": "Journal Article", "created": "2006-10-03", "title": "Effects Of Long-Term Heavy Metal Contamination On Soil Microbial Characteristics", "description": "In this study, total heavy metal content and its effects on soil microbiological characteristics were investigated in soil samples from an area with known long-term pollution problems. The total heavy metal concentrations of contaminated soil samples were 109 and 1,558 mg/kg for Hg and As, respectively. Key microbiological parameters measured included dehydrogenase activity, ATP content and number of culturable aerobic bacteria, actinomycetes, fungi and asymbiotic nitrogen-fixers. Quantitative analysis of soil microbial populations shows a marked decrease in total culturable numbers of the different microbial groups of the contaminated soil samples. Certain groups of soil microbes were particularly sensitive to long-term contamination (asymbiotic nitrogen-fixers and heterotrophic bacteria). Dehydrogenase activity was found to be a sensitive assay for determining the effect of heavy metals on physiologically active soil microbial biomass and sustains the high applicability of this parameter for soil ecotoxicological testing as reported by other authors.", "keywords": ["Time Factors", "Fungi", "Mercury", "04 agricultural and veterinary sciences", "01 natural sciences", "6. Clean water", "Arsenic", "Actinobacteria", "13. Climate action", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Oxidoreductases", "Soil Microbiology", "0105 earth and related environmental sciences"], "contacts": [{"organization": "Maria Elisa Pampulha, A. Oliveira,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1263/jbb.102.157"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Bioscience%20and%20Bioengineering", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1263/jbb.102.157", "name": "item", "description": "10.1263/jbb.102.157", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1263/jbb.102.157"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-09-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=6&offset=5250&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=6&offset=5250&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "prev", "title": "items (prev)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=6&offset=5200", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=6&offset=5300", "hreflang": "en-US"}], "numberMatched": 9875, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-04-06T09:08:10.351351Z"}