{"type": "FeatureCollection", "features": [{"id": "10.1002/ecy.1513", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:14:26Z", "type": "Journal Article", "created": "2016-07-02", "title": "Land Use Intensification In The Humid Tropics Increased Both Alpha And Beta Diversity Of Soil Bacteria", "description": "Abstract<p>Anthropogenic pressures on tropical forests are rapidly intensifying, but our understanding of their implications for biological diversity is still very limited, especially with regard to soil biota, and in particular soil bacterial communities. Here we evaluated bacterial community composition and diversity across a gradient of land use intensity in the eastern Amazon from undisturbed primary forest, through primary forests varyingly disturbed by fire, regenerating secondary forest, pasture, and mechanized agriculture. Soil bacteria were assessed by paired\uffe2\uff80\uff90end Illumina sequencing of 16S rRNA gene fragments (V4 region). The resulting sequences were clustered into operational taxonomic units (OTU) at a 97% similarity threshold. Land use intensification increased the observed bacterial diversity (both OTU richness and community heterogeneity across space) and this effect was strongly associated with changes in soil pH. Moreover, land use intensification and subsequent changes in soil fertility, especially pH, altered the bacterial community composition, with pastures and areas of mechanized agriculture displaying the most contrasting communities in relation to undisturbed primary forest. Together, these results indicate that tropical forest conversion impacts soil bacteria not through loss of diversity, as previously thought, but mainly by imposing marked shifts on bacterial community composition, with unknown yet potentially important implications for ecological functions and services performed by these communities.</p>", "keywords": ["Rios de composi\u00e7\u00e3o de comunidade bacteriana", "2. Zero hunger", "0301 basic medicine", "570", "0303 health sciences", "550", "Bacteria", "Biodiversidade subterr\u00e2nea", "Agriculture", "Biodiversity", "Forests", "15. Life on land", "Below\u2010ground biodiversity", "High\u2010throughput sequencing", "Soil", "03 medical and health sciences", "RNA", " Ribosomal", " 16S", "Sequenciamento de alto rendimento", "Rivers of bacterial community composition", "Soil Microbiology"]}, "links": [{"href": "https://eprints.lancs.ac.uk/id/eprint/82660/1/de_Carvalho_et_al_2016_raw_pdf.pdf"}, {"href": "https://doi.org/10.1002/ecy.1513"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ecy.1513", "name": "item", "description": "10.1002/ecy.1513", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ecy.1513"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-09-09T00:00:00Z"}}, {"id": "0e018dea-ab53-461f-b454-2eaaca8c765c", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[6.67, 47.98], [6.67, 51.27], [10.81, 51.27], [10.81, 47.98], [6.67, 47.98]]]}, "properties": {"themes": [{"concepts": [{"id": "farming"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "Soil"}, {"id": "winter wheat"}, {"id": "spring barley"}, {"id": "organic fertilizers"}, {"id": "ammonium"}, {"id": "nitrates"}, {"id": "protein quality"}], "scheme": "AGROVOC Multilingual agricultural thesaurus"}, {"concepts": [{"id": "opendata; Wheat"}, {"id": "barley"}, {"id": "organic agriculture"}, {"id": "Rhizosphere soil"}, {"id": "bulk soil"}, {"id": "microbial biomass"}, {"id": "microrespiration"}, {"id": "meta-barcode sequencing of bacterial community"}, {"id": "quantification of bacterial inoculant"}, {"id": "gluten"}, {"id": "HMW"}, {"id": "hordein"}, {"id": "ProteinZ"}, {"id": "bread quality"}, {"id": "grain storage protein"}], "scheme": "Individual"}, {"concepts": [{"id": "Boden"}], "scheme": "GEMET - INSPIRE themes, version 1.0"}], "rights": "Restrictions applied to assure the protection of privacy or intellectual property, and any special restrictions or limitations or warnings on using the resource or metadata. Reports, articles, papers, scientific and non - scientific works of any form, including tables, maps, or any other kind of output, in printed or electronic form, based in whole or in part on the data supplied, must contain an acknowledgement of the form: \"Data reused from the BonaRes Data Centre www.bonares.de. This data were created as part of the Rhizo4Bio - bread and beer's research activities.\" Although every care has been taken in preparing and testing the data, the Rhizo4Bio - bread and beer and the BonaRes Data Centre cannot guarantee that the data are correct; neither does the Rhizo4Bio - bread and beer and the BonaRes Data Centre accept any liability whatsoever for any error, missing data or omission in the data, or for any loss or damage arising from its use. The Rhizo4Bio - bread and beer and BonaRes Data Centre will not be responsible for any direct or indirect use which might be made of the data.", "updated": "2024-08-22", "type": "Dataset", "created": "2024-07-18", "language": "eng", "title": "Production of wheat and barley under reduced input in organic farming - Soil parameters for season I and II", "description": "During the last decades, organic farming has undergone a notable expansion as a common agricultural practice throughout the world. This, together with an increasing demand for fertilizer and pesticide reduction has led to consider different and new approaches. We investigate the effect of Hartmannibacter diazotrophicus strain E19, a plant growth promoting rhizobacterium, in order to enhance the production of wheat and barley under low energy input. For that, we analyze the effect of three factors: organic fertilizer (with and without, only wheat), row distance (15 cm and 50 cm), and bacterial inoculation (E19 and control) at two different organic experimental field stations (Gladbacherhof and Kleinhohenheim). The dataset provides information about different parameter determined from rhizosphere soil and root samples collected at two different developmental stages (flowering and milk/fully ripe), as well as, the grain yield, straw yield, 1000 kernel mass, and seed quality during the seasons 2020-2021 and 2021-2022. The following soil parameter were evaluated: ammonium, nitrate, carbon-nitrogen ratio, microbial biomass, the respiration activity using different carbon sources (glucose, galactose, N-acetylglucosamine, arginine). These data sets are currently under evaluation and complemented with the quantification from root samples through quantitative PCR (qPCR) of strain E19 and the metabarcoding sequencing of the bacterial communities based on 16S rRNA genes obtained from rhizosphere soil samples during the two seasons.  Soil parameter data\n\nRelated datasets are listed in the metadata element 'Related Identifier'.\nDataset version 1.0", "formats": [{"name": "CSV"}], "keywords": ["Soil", "winter wheat", "spring barley", "organic fertilizers", "ammonium", "nitrates", "protein quality", "opendata; Wheat", "barley", "organic agriculture", "Rhizosphere soil", "bulk soil", "microbial biomass", "microrespiration", "meta-barcode sequencing of bacterial community", "quantification of bacterial inoculant", "gluten", "HMW", "hordein", "ProteinZ", "bread quality", "grain storage protein", "Boden"], "contacts": [{"name": "Santiago Quiroga", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Santiago.Quiroga@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0009-0001-1392-8241", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Sylvia Schnell", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["projectLeader"], "phones": [{"value": null}], "emails": [{"value": "sylvia.schnell@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-3903-6089", "name_url": "", "description": "orcid", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "ZALF", "organization": "Leibniz Centre for Agricultural Landscape Research (ZALF)", "position": "Research Platform 'Data Analysis & Simulation' - Workgroup Research Data Management", "roles": ["publisher"], "phones": [{"value": "+49 33432 82 300"}], "emails": [{"value": "dataservice@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Strasse 84"], "city": "M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": "15374", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Stefan Ratering", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Stefan.Ratering@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0001-7572-6306", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Azin Rekowski", "organization": "University of Hohenheim", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "azin.ghabelrahmat@uni-hohenheim.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-0179-663X", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Christian Z\u00f6rb", "organization": "University of Hohenheim", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Christian.zoerb@uni-hohenheim.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-0000-5138", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Sylvia Schnell", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "sylvia.schnell@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-3903-6089", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"organization": "Justus-Liebig University Giessen;University of Hohenheim", "roles": ["contributor"]}], "title_alternate": "LTE: Part 1/5, table: Soil parameters for season I and II"}, "links": [{"href": "https://maps.bonares.de/mapapps/resources/apps/bonares/index.html?lang=en&mid=0e018dea-ab53-461f-b454-2eaaca8c7gmd:65c", "rel": "download"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/0e018dea-ab53-461f-b454-2eaaca8c765c", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "0e018dea-ab53-461f-b454-2eaaca8c765c", "name": "item", "description": "0e018dea-ab53-461f-b454-2eaaca8c765c", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/0e018dea-ab53-461f-b454-2eaaca8c765c"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-08-22T00:00:00Z"}}, {"id": "10.1007/s00374-006-0139-9", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:14:42Z", "type": "Journal Article", "created": "2006-10-10", "title": "Effect Of Intercropping On Crop Yield And Chemical And Microbiological Properties In Rhizosphere Of Wheat (Triticum Aestivum L.), Maize (Zea Mays L.), And Faba Bean (Vicia Faba L.)", "description": "In this study, we investigated crop yield and various chemical and microbiological properties in rhizosphere of wheat, maize, and faba bean grown in the field solely and intercropped (wheat/faba bean, wheat/maize, and maize/faba bean) in the second and third year after establishment of the cropping systems. In both years, intercropping increased crop yield, changed N and P availability, and affected the microbiological properties in rhizosphere of the three species compared to sole cropping. Generally, intercropping increased microbial biomass C, N, and P availability, whereas it reduced microbial biomass N in rhizosphere of wheat. The rhizosphere bacterial community composition was studied by denaturing gradient gel electrophoresis of 16S rRNA. In the third year of different cropping systems, intercropping significantly changed bacterial community composition in rhizosphere compared with sole cropping, and the effects were most pronounced in the wheat/faba bean intercropping system. The effects were less pronounced in the second year. The results show that intercropping has significant effects on microbiological and chemical properties in the rhizosphere, which may contribute to the yield enhancement by intercropping.", "keywords": ["PCR-DGGE", "2. Zero hunger", "Intercropping", "571", "Bacterial community composition", "Rhizosphere", "Microbial biomass", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences"]}, "links": [{"href": "https://doi.org/10.1007/s00374-006-0139-9"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biology%20and%20Fertility%20of%20Soils", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00374-006-0139-9", "name": "item", "description": "10.1007/s00374-006-0139-9", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00374-006-0139-9"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-10-11T00:00:00Z"}}, {"id": "10.1016/j.agee.2022.107856", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:15:24Z", "type": "Journal Article", "created": "2022-01-11", "title": "A first-year melon/cowpea intercropping system improves soil nutrients and changes the soil microbial community", "description": "The melon/cowpea intercropping system can be a specific and efficient cropping pattern in a horticultural field. Intercropping systems contribute to the optimization of land use, fostering sustainable and efficient agriculture. This study entails a first-year comparative intercropping assay using cowpea (Vigna unguiculata) and melon (Cucumis melo) under organic management with different patterns and 30% less organic fertilization than usual in monocrops. We determined the soil nutrients, physicochemical properties, enzyme activities and microbes by high-throughput sequencing. We found that the intercropping system changed the bacterial community structure independently of the intercropping pattern. The bacterial community was characterized by a higher abundance of the phyla Proteobacteria and Bacteroidetes phyla and of the genus Pseudomonas, which are related to nutrient cycling, and by greater amounts of other beneficial microorganisms like Bacillus, Streptomyces and Sphingomonas. The intercropped systems significantly boosted the total nitrogen, available phosphorus and total organic carbon levels in addition to the melon yield. They also enhanced the acid phosphatase and \ufffd\ufffd-glucosidase activity compared to the melon monocrop. Results from this study suggest that melon/cowpea intercropping, starting from the first year, not only provides a stable supply of food and income due to the diversified cropping systems, but is also beneficial for the soil microbial community and environment.", "keywords": ["Melon", "2. Zero hunger", "Intercropping", "Nitrogen", "Cowpea", "Phosphorous", "0401 agriculture", " forestry", " and fisheries", "Bacterial community", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water"]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2022.107856"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2022.107856", "name": "item", "description": "10.1016/j.agee.2022.107856", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2022.107856"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-01T00:00:00Z"}}, {"id": "10.1016/j.apsoil.2022.104649", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:15:32Z", "type": "Journal Article", "created": "2022-08-30", "title": "Effects of microplastics on common bean rhizosphere bacterial communities", "description": "Microplastic pollution in terrestrial ecosystems is a growing concern due to its potential influences on soil properties and crop growth. Little is known about the effects of microplastics on the microbiome in the rhizosphere. Here, we studied the effects of two types of microplastics (MPs), low density polyethylene (LDPE-MPs) and biodegradable microplastic (Bio-MPs) of poly-butylene-adipate-co-terephthalate (PBAT) mixed with polylactic acid (PLA), on rhizosphere bacterial communities of Phaseolus vulgaris at doses of 0.5 %, 1.0 % and 2.5 % (w/w, dry weight ratio between MPs and soil). Bio-MPs and LDPE-MPs showed significant higher \u03b1-diversity (Chao 1, ACE, Shannon and Simpson) than control. For each type of microplastic material, 2.5 % of LDPE-MPs and Bio-MPs showed lowest \u03b1-diversity as compared to doses of 0.5 % and 1.0 %, indicating 2.5 % dose of MPs might pose selective effect on rhizosphere bacterial communities. \u03b2-Diversity of 1.0 % and 2.5 % Bio-MPs were distinctive from the control and other treatments. Microplastics also affected the relative abundance at family level, i.e. as compared to control, Comamonadaceae was higher in all the MPs treatments, Rhizobiaceae was highest in 2.5 % LDPE-MPs and lowest in 2.5 % Bio-MPs. LefSe results showed, as compared to control, Bio-MPs induced more indictive taxa than LDPE-MPs. Our findings evidenced that LDPE-MPs and Bio-MPs exerted profound effects on rhizosphere bacterial communities, and these effects might have far-reaching effects on soil nutrient cycling and plant health in agroecosystems.", "keywords": ["2. Zero hunger", "0301 basic medicine", "03 medical and health sciences", "Low density polyethylene plastic", "13. Climate action", "Microplastics", "16S rRNA", "15. Life on land", "Biodegradable plastic", "Rhizosphere bacterial community", "01 natural sciences", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2022.104649"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2022.104649", "name": "item", "description": "10.1016/j.apsoil.2022.104649", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2022.104649"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2014.06.094", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:15:38Z", "type": "Journal Article", "created": "2014-08-13", "title": "Influence of tetracycline on the microbial community composition and activity of nitrifying biofilms", "description": "The present work aims to evaluate the bacterial composition and activity (carbon and nitrogen removal) of nitrifying biofilms exposed to 50 \u03bcg L(-1) of tetracycline. The tetracycline removal efficiency and the occurrence of tetracycline resistance (tet) genes were also studied. Two sequencing batch biofilm reactors (SBBRs) fed with synthetic wastewater were operated without (SBBR1) and with (SBBR2) the antibiotic. Both SBBRs showed similar organic matter biodegradation and nitrification activity. Tetracycline removal was about 28% and biodegradation was probably the principal removal mechanism of the antibiotic. Polymerase chain reaction-denaturing gradient gel electrophoresis analysis of the bacterial community showed shifts leading to not only the fading of some ribotypes, but also the emergence of new ones in the biofilm with tetracycline. The study of the tet genes showed that tet(S) was only detected in the biofilm with tetracycline, suggesting a relationship between its occurrence and the presence of the antibiotic.", "keywords": ["Science & Technology", "Polymers", "Microbiota", "Molecular Sequence Data", "Tetracycline Resistance", "0211 other engineering and technologies", "Resistance genes", "Sequence Analysis", " DNA", "02 engineering and technology", "Tetracycline", "Nitrification", "01 natural sciences", "6. Clean water", "Anti-Bacterial Agents", "Tetracycline removal", "Nitrifying biofilms", "Bacterial Proteins", "Antibiotics", "Biofilms", "11. Sustainability", "Bacterial community", "Adsorption", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2014.06.094"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2014.06.094", "name": "item", "description": "10.1016/j.chemosphere.2014.06.094", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2014.06.094"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-12-01T00:00:00Z"}}, {"id": "10.1016/j.orggeochem.2021.104346", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:16:17Z", "type": "Journal Article", "created": "2021-11-27", "title": "Soil chemistry, temperature and bacterial community composition drive brGDGT distributions along a subarctic elevation gradient", "description": "Open AccessOrganic Geochemistry, 163", "keywords": ["2. Zero hunger", "Chemistry", "Soil biomarkers", "13. Climate action", "Physics", "brGDGT", "Bacterial community", "brGDGT; Biomarker proxy; Bacterial community; Soil biomarkers", "15. Life on land", "Biomarker proxy", "01 natural sciences", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.orggeochem.2021.104346"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Organic%20Geochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.orggeochem.2021.104346", "name": "item", "description": "10.1016/j.orggeochem.2021.104346", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.orggeochem.2021.104346"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2013.07.001", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:16:33Z", "type": "Journal Article", "created": "2013-07-14", "title": "Agricultural Management Affects The Response Of Soil Bacterial Community Structure And Respiration To Water-Stress", "description": "Soil microorganisms are responsible for organic matter decomposition processes that regulate soil carbon storage and mineralisation to CO2. Climate change is predicted to increase the frequency of drought events, with uncertain consequences for soil microbial communities. In this study we tested the hypothesis that agricultural management used to enhance soil carbon stocks would increase the stability of microbial community structure and activity in response to water-stress. Soil was sampled from a long-term field trial with three soil carbon management systems and was used in a laboratory study of the effect of a dry\u2013wet cycle on organic C mineralisation and microbial community structure. After a drying\u2013rewetting event, soil microcosms were maintained wet and microbial community structure and abundance as well as microbial respiration were measured for four weeks. The results showed that the NO-TILL management system, with the highest soil organic matter content and respiration rate, had a distinct bacterial community structure relative to the conventional and the TILL without fertiliser systems. In all management systems, the rewetting event clearly modified microbial community structure and activity. Both returned to their pre-drought state after 28 days. However, the magnitude of variation of C mineralisation was lower (i.e. the resistance to stress was higher) in the NO-TILL system. The genetic structure of the NO-TILL bacterial communities was most modified by water-stress and exhibited a slower recovery rate. This suggests that land use management can increase microbial functional resistance to drought stress via the establishment of bacterial communities with particular metabolic capacities. Nevertheless, the resilience rates of C mineralisation were similar among management regimes, suggesting that similar mechanisms occur, maybe due to a common soil microbial community legacy.", "keywords": ["[SDE] Environmental Sciences", "570", "Agricultural land use", "[SDV]Life Sciences [q-bio]", "630", "Drying-rewetting", "FUNCTIONAL STABILITY", "[SDV.BV]Life Sciences [q-bio]/Vegetal Biology", "[SDV.BV] Life Sciences [q-bio]/Vegetal Biology", "Drying\u2013rewetting", "NITROGEN MINERALIZATION", "Global change", "2. Zero hunger", "C mineralisation", "CLIMATE-CHANGE", "MICROBIAL COMMUNITY", "LAND-USE CHANGE", "04 agricultural and veterinary sciences", "RESILIENCE", "15. Life on land", "DRYING-REWETTING FREQUENCY", "6. Clean water", "[SDV] Life Sciences [q-bio]", "ORGANIC-MATTER", "13. Climate action", "[SDE]Environmental Sciences", "Bacterial community structure", "0401 agriculture", " forestry", " and fisheries", "CATABOLIC DIVERSITY", "CARBON STOCKS", "Stability"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2013.07.001"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2013.07.001", "name": "item", "description": "10.1016/j.soilbio.2013.07.001", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2013.07.001"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-11-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2024.109480", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:16:37Z", "type": "Journal Article", "created": "2024-05-24", "title": "Microplastics exert minor influence on bacterial community succession during the aging of earthworm (Lumbricus terrestris) casts", "description": "The soil microbiome, which is shaped by gut-related activities of earthworms, is affected by microplastic contamination. However, the influence of microplastics on earthworm gut and cast microbiomes has been poorly explored. Here, we investigated the influence of microplastics (1% in soil, w/w) on soil physicochemical properties and bacterial communities during gut passage and cast aging of Lumbricus terrestris. Microplastics used in agricultural film production were selected, i.e., low density polyethylene, polylactic acid and polybutylene adipate terephthalate (PBAT). Different niches, including pre-ingestion soil, gut content and aged casts (from 0 to 180 days), were studied. Results showed that microplastics possibly enhanced the gut passage-derived difference between pre-ingestion soil and fresh cast in terms of pH, ammonium, nitrate and nitrite, and dissolved organic carbon. But such effects mostly faded out after 180 days of aging. The composition, as well as the alpha and beta diversity of both the total (DNA) and active (RNA) bacterial communities were decisively shaped by their niche (R2: 0.22\u20130.63, p < 0.001, PERMANOVA), rather than the presence/absence or the types of MPs. Nevertheless, biomarkers indicative of PBAT treatment were identified, and functional prediction for the active community showed that bacterial communities of this treatment had higher potentials for hydrocarbon degradation (4.9\u20137.8 times that of the microplastic-free treatment in gut and aged casts). We also identified a \u201cSoil-related core community\u201d and a \u201cGut-related core community\u201d (contributing to 39.2%\u201350.2% of the cast microbiome), which possibly neutralized microplastic impacts and maintained the structure and function of bacterial communities during the soil\u2013gut\u2013cast transit. Our findings indicate that the tested microplastics exerted a minor influence on the bacterial communities during the cast aging process, microplastics in aged casts might not necessarily have significant additional influence on the soil microbiome when they are incorporated into soils. Future studies testing different soils, polymers, and earthworm species, under field conditions are recommended to help enhance current knowledge of the influence of microplastics on earthworm cast microbiomes.", "keywords": ["0301 basic medicine", "03 medical and health sciences", "Active bacterial community", "Cast physicochemical properties", "Lumbricus terrestris", "Microplastics", "Earthworm gut content", "Cast aging", "01 natural sciences", "6. Clean water", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2024.109480"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2024.109480", "name": "item", "description": "10.1016/j.soilbio.2024.109480", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2024.109480"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-08-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2019.107521", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:16:36Z", "type": "Journal Article", "created": "2019-06-26", "title": "Soil multifunctionality is affected by the soil environment and by microbial community composition and diversity", "description": "Microorganisms are critical in mediating carbon (C) and nitrogen (N) cycling processes in soils. Yet, it has long been debated whether the processes underlying biogeochemical cycles are affected by the composition and diversity of the soil microbial community or not. The composition and diversity of soil microbial communities can be influenced by various environmental factors, which in turn are known to impact biogeochemical processes. The objectives of this study were to test effects of multiple edaphic drivers individually and represented as the multivariate soil environment interacting with microbial community composition and diversity, and concomitantly on multiple soil functions (i.e. soil enzyme activities, soil C and N processes). We employed high-throughput sequencing (Illumina MiSeq) to analyze bacterial/archaeal and fungal community composition by targeting the 16S rRNA gene and the ITS1 region of soils collected from three land uses (cropland, grassland and forest) deriving from two bedrock forms (silicate and limestone). Based on this data set we explored single and combined effects of edaphic variables on soil microbial community structure and diversity, as well as on soil enzyme activities and several soil C and N processes. We found that both bacterial/archaeal and fungal communities were shaped by the same edaphic factors, with most single edaphic variables and the combined soil environment representation exerting stronger effects on bacterial/archaeal communities than on fungal communities, as demonstrated by (partial) Mantel tests. We also found similar edaphic controls on the bacterial/archaeal/fungal richness and diversity. Soil C processes were only directly affected by the soil environment but not affected by microbial community composition. In contrast, soil N processes were significantly related to bacterial/archaeal community composition and bacterial/archaeal/fungal richness/diversity but not directly affected by the soil environment. This indicates direct control of the soil environment on soil C processes and indirect control of the soil environment on soil N processes by structuring the microbial communities. The study further highlights the importance of edaphic drivers and microbial communities (i.e. composition and diversity) on important soil C and N processes.", "keywords": ["0301 basic medicine", "570", "550", "ECOSYSTEM MULTIFUNCTIONALITY", "BACTERIAL COMMUNITY", "106027 \u00d6kotoxikologie", "FUNGAL COMMUNITIES", "Soil functions", "Article", "03 medical and health sciences", "Microbial community composition and diversity", "CARBON-USE EFFICIENCY", "106027 Ecotoxicology", "ENZYME-ACTIVITIES", "SDG 15 \u2013 Leben an Land", "Life Below Water", "SDG 15 - Life on Land", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "Agricultural and Veterinary Sciences", "LAND-USE", "SUBSTRATE USE EFFICIENCY", "Agronomy & Agriculture", "Biological Sciences", "15. Life on land", "TEMPERATE FOREST", "13. Climate action", "LONG-TERM N", "106022 Microbiology", "Edaphic drivers", "BAYESIAN CLASSIFIER", "Environmental Sciences"]}, "links": [{"href": "https://escholarship.org/content/qt83b3006k/qt83b3006k.pdf"}, {"href": "https://doi.org/10.1016/j.soilbio.2019.107521"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2019.107521", "name": "item", "description": "10.1016/j.soilbio.2019.107521", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2019.107521"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-09-01T00:00:00Z"}}, {"id": "10.17169/refubium-29038", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-22T16:18:36Z", "type": "Journal Article", "created": "2020-10-17", "title": "Protists and collembolans alter microbial community composition, C\u00a0dynamics and soil aggregation in simplified consumer\u2013prey systems", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Abstract. Microbes play an essential role in soil functioning including biogeochemical cycling and soil aggregate formation. Yet, a major challenge is to link microbes to higher trophic levels and assess consequences for soil functioning. Here, we aimed to assess how microbial consumers modify microbial community composition (PLFA markers), as well as C dynamics (microbial\u00a0C use, SOC concentration and CO2 emission) and soil aggregation. We rebuilt two simplified soil consumer\u2013prey systems: a bacterial-based system comprising amoebae (Acanthamoeba castellanii) feeding on a microbial community dominated by the free-living bacterium Pseudomonas fluorescens and a fungal-based system comprising collembolans (Heteromurus nitidus) grazing on a microbial community dominated by the saprotrophic fungus Chaetomium globosum. The amoeba A. castellanii did not affect microbial biomass and composition, but it enhanced the formation of soil aggregates and tended to reduce their stability. Presumably, the dominance of P. fluorescens, able to produce antibiotic toxins in response to the attack by A. castellanii, was the main cause of the unchanged microbial community composition, and the release of bacterial extracellular compounds, such as long-chained polymeric substances or proteases, in reaction to predation was responsible for the changes in soil aggregation as a side effect. In the fungal system, collembolans significantly modified microbial community composition via consumptive and non-consumptive effects including the transport of microbes on the body surface. As expected, fungal biomass promoted soil aggregation and was reduced in the presence of H. nitidus. Remarkably, we also found an unexpected contribution of changes in bacterial community composition to soil aggregation. In both the bacterial and fungal systems, bacterial and fungal communities mainly consumed C from soil organic matter (rather than the litter added). Increased fungal biomass was associated with an increased capture of C from added litter, and the presence of collembolans levelled off this effect. Neither amoebae nor collembolans altered SOC concentrations and CO2 production. Overall, the results demonstrated that trophic interactions are important for achieving a mechanistic understanding of biological contributions to soil aggregation and may occur without major changes in C dynamics and with or without changes in the composition of the microbial community.</p></article>", "keywords": ["2. Zero hunger", "570", "QE1-996.5", "Acanthamoeba castellanii", "life", "agroecosystems", "Ecology", "fatty-acid analysis", "Geology", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie", "04 agricultural and veterinary sciences", "stability", "15. Life on land", "01 natural sciences", "bacterial community", "diversity", "stabilization", "Life", "13. Climate action", "QH501-531", "0401 agriculture", " forestry", " and fisheries", "QH540-549.5", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.17169/refubium-29038"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biogeosciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.17169/refubium-29038", "name": "item", "description": "10.17169/refubium-29038", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.17169/refubium-29038"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-17T00:00:00Z"}}, {"id": "10.20944/preprints202106.0434.v1", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-22T16:18:43Z", "type": "Journal Article", "created": "2021-06-16", "title": "Going beyond Soil Conservation with the Use of Cover Crops in Mediterranean Sloping Olive Orchards", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Among the agricultural practices promoted by the Common Agricultural Policy to increase soil functions, the use of cover crops is a recommended tool to improve the sustainability of Mediter-ranean woody crops such as olive orchards. However, there is a broad range of cover crop ty-pologies in relation to its implementation, control and species composition. In that sense, the in-fluence of different plant species on soil quality indicators in olive orchards remains unknown yet. This study describes the effects of four treatments based on the implementation of different ground covers (CC-NAT, CC-GRA and CC-MIX) and conventional tillage (TILL) on soil erosion, soil physicochemical and biological properties, and soil microbial communities after 8 years of cover crop establishment. Our results have demonstrated that the presence of a temporary cover crop (CC), compared to a soil under tillage (TILL), can reduce soil losses and maintain good soil physicochemical properties and modify greatly the structure and diversity of soil bacterial com-munities and its functioning. The presence of a homogeneous CC of gramineous (Lolium rigidum or Lolilum multiflorum) (CC-GR) for 8 years significantly increased the functional properties of the soil as compared to TILL; although the most significant change was a modification on the bacte-rial community composition that was clearly different from the rest of treatments. On the other hand, the use of a mixture of plant species (CC-MIX) as a CC for only two years although did not modify greatly the structure and diversity of soil bacterial communities compared to the TILL soil, induced significant changes on the functional properties of the soil, and reverted those properties to a level similar to that of an undisturbed soil that had maintained a natural cover of spontaneous vegetation for decades (CC-NAT).</p></article>", "keywords": ["0301 basic medicine", "2. Zero hunger", "Microbial diversity", "soil erosion", "S", "Agriculture", "04 agricultural and veterinary sciences", "metabolic activity", "15. Life on land", "Soil quality", "6. Clean water", "bacterial community composition", "03 medical and health sciences", "13. Climate action", "microbial diversity", "Bacterial community composition", "Metabolic activity", "11. Sustainability", "Soil erosion", "biochemistry", "0401 agriculture", " forestry", " and fisheries", "soil quality"]}, "links": [{"href": "http://www.mdpi.com/2073-4395/11/7/1387/pdf"}, {"href": "https://www.mdpi.com/2073-4395/11/7/1387/pdf"}, {"href": "https://doi.org/10.20944/preprints202106.0434.v1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.20944/preprints202106.0434.v1", "name": "item", "description": "10.20944/preprints202106.0434.v1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.20944/preprints202106.0434.v1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-06-16T00:00:00Z"}}, {"id": "10.5194/bg-17-4961-2020", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:19:53Z", "type": "Journal Article", "created": "2020-10-17", "title": "Protists and collembolans alter microbial community composition, C\u00a0dynamics and soil aggregation in simplified consumer\u2013prey systems", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Abstract. Microbes play an essential role in soil functioning including biogeochemical cycling and soil aggregate formation. Yet, a major challenge is to link microbes to higher trophic levels and assess consequences for soil functioning. Here, we aimed to assess how microbial consumers modify microbial community composition (PLFA markers), as well as C dynamics (microbial\u00a0C use, SOC concentration and CO2 emission) and soil aggregation. We rebuilt two simplified soil consumer\u2013prey systems: a bacterial-based system comprising amoebae (Acanthamoeba castellanii) feeding on a microbial community dominated by the free-living bacterium Pseudomonas fluorescens and a fungal-based system comprising collembolans (Heteromurus nitidus) grazing on a microbial community dominated by the saprotrophic fungus Chaetomium globosum. The amoeba A. castellanii did not affect microbial biomass and composition, but it enhanced the formation of soil aggregates and tended to reduce their stability. Presumably, the dominance of P. fluorescens, able to produce antibiotic toxins in response to the attack by A. castellanii, was the main cause of the unchanged microbial community composition, and the release of bacterial extracellular compounds, such as long-chained polymeric substances or proteases, in reaction to predation was responsible for the changes in soil aggregation as a side effect. In the fungal system, collembolans significantly modified microbial community composition via consumptive and non-consumptive effects including the transport of microbes on the body surface. As expected, fungal biomass promoted soil aggregation and was reduced in the presence of H. nitidus. Remarkably, we also found an unexpected contribution of changes in bacterial community composition to soil aggregation. In both the bacterial and fungal systems, bacterial and fungal communities mainly consumed C from soil organic matter (rather than the litter added). Increased fungal biomass was associated with an increased capture of C from added litter, and the presence of collembolans levelled off this effect. Neither amoebae nor collembolans altered SOC concentrations and CO2 production. Overall, the results demonstrated that trophic interactions are important for achieving a mechanistic understanding of biological contributions to soil aggregation and may occur without major changes in C dynamics and with or without changes in the composition of the microbial community.                     </p></article>", "keywords": ["2. Zero hunger", "570", "QE1-996.5", "Acanthamoeba castellanii", "life", "agroecosystems", "Ecology", "fatty-acid analysis", "Geology", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie", "04 agricultural and veterinary sciences", "stability", "15. Life on land", "01 natural sciences", "bacterial community", "diversity", "stabilization", "Life", "13. Climate action", "QH501-531", "0401 agriculture", " forestry", " and fisheries", "QH540-549.5", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.5194/bg-17-4961-2020"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biogeosciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.5194/bg-17-4961-2020", "name": "item", "description": "10.5194/bg-17-4961-2020", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5194/bg-17-4961-2020"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-17T00:00:00Z"}}, {"id": "10.3389/fmicb.2016.01207", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:19:13Z", "type": "Journal Article", "created": "2016-08-03", "title": "Wheat And Rice Growth Stages And Fertilization Regimes Alter Soil Bacterial Community Structure, But Not Diversity", "description": "Maintaining soil fertility and the microbial communities that determine fertility is critical to sustainable agricultural strategies, and the use of different organic fertilizer (OF) regimes represents an important practice in attempts to preserve soil quality. However, little is known about the dynamic response of bacterial communities to fertilization regimes across crop growth stages. In this study, we examined microbial community structure and diversity across eight representative growth stages of wheat-rice rotation under four different fertilization treatments: no nitrogen fertilizer (NNF), chemical fertilizer (CF), organic-inorganic mixed fertilizer (OIMF), and OF. Quantitative PCR (QPCR) and high-throughput sequencing of bacterial 16S rRNA gene fragments revealed that growth stage as the best predictor of bacterial community abundance and structure. Additionally, bacterial community compositions differed between wheat and rice rotations. Relative to soils under wheat rotation, soils under rice rotation contained higher relative abundances (RA) of anaerobic and mesophilic microbes and lower RA of aerophilic microbes. With respect to fertilization regime, NNF plots had a higher abundance of nitrogen-fixing Cyanobacteria. OIMF had a lower abundance of ammonia-oxidizing Thaumarchaeota compared with CF. Application of chemical fertilizers (CF and OIMF treatments) significantly increased the abundance of some generally oligotrophic bacteria such those belonging to the Acidobacteria, while more copiotrophic of the phylum Proteobacteria increased with OF application. A high correlation coefficient was found when comparing RA of Acidobacteria based upon QPCR vs. sequence analysis, yet poor correlations were found for the \u03b1- and \u03b2- Proteobacteria, highlighting the caution required when interpreting these molecular data. In total, crop, fertilization scheme and plant developmental stage all influenced soil microbial community structure, but not total levels of alpha diversity.", "keywords": ["2. Zero hunger", "Growth stage", "Fertilization regime", "04 agricultural and veterinary sciences", "15. Life on land", "bacterial community", "Microbiology", "Bacterial communities", "QR1-502", "growth stage", "fertilization regime", "wheat-rice rotation system", "0401 agriculture", " forestry", " and fisheries", "dynamic variation", "Wheat-rice rotation system", "Dynamic variation"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2016.01207"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2016.01207", "name": "item", "description": "10.3389/fmicb.2016.01207", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2016.01207"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-08-03T00:00:00Z"}}, {"id": "10.3389/fmicb.2015.00891", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:19:13Z", "type": "Journal Article", "created": "2015-09-04", "title": "Soil Bacterial And Fungal Community Responses To Nitrogen Addition Across Soil Depth And Microhabitat In An Arid Shrubland", "description": "Arid shrublands are stressful environments, typified by alkaline soils low in organic matter, with biologically-limiting extremes in water availability, temperature, and UV radiation. The widely-spaced plants and interspace biological soil crusts in these regions provide soil nutrients in a localized fashion, creating a mosaic pattern of plant- or crust-associated microhabitats with distinct nutrient composition. With sporadic and limited rainfall, nutrients are primarily retained in the shallow surface soil, patterning biological activity. We examined soil bacterial and fungal community responses to simulated nitrogen (N) deposition in an arid Larrea tridentata-Ambrosia dumosa field experiment in southern Nevada, USA, using high-throughput sequencing of ribosomal RNA genes. To examine potential interactions among the N application, microhabitat and soil depth, we sampled soils associated with shrub canopies and interspace biological crusts at two soil depths (0-0.5 or 0-10 cm) across the N-amendment gradient (0, 7, and 15 kg ha(-1) yr(-1)). We hypothesized that localized compositional differences in soil microbiota would constrain the impacts of N addition to a microhabitat distribution that would reflect highly localized geochemical conditions and microbial community composition. The richness and community composition of both bacterial and fungal communities differed significantly by microhabitat and with soil depth in each microhabitat. Only bacterial communities exhibited significant responses to the N addition. Community composition correlated with microhabitat and depth differences in soil geochemical features. Given the distinct roles of soil bacteria and fungi in major nutrient cycles, the resilience of fungi and sensitivity of bacteria to N amendments suggests that increased N input predicted for many arid ecosystems could shift nutrient cycling toward pathways driven primarily by fungal communities.", "keywords": ["2. Zero hunger", "0301 basic medicine", "biological soil crusts", "0303 health sciences", "microhabitat", "soil bacterial community", "dryland", "15. Life on land", "soil fungal community", "Microbiology", "Shrubland", "QR1-502", "6. Clean water", "03 medical and health sciences", "Soil bacterial community", "shrubland", "ribosomal RNA", "global change"], "contacts": [{"organization": "Cheryl R. Kuske, Jayne Belnap, Rebecca C. Mueller,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2015.00891"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2015.00891", "name": "item", "description": "10.3389/fmicb.2015.00891", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2015.00891"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-09-04T00:00:00Z"}}, {"id": "10.3390/agriculture15060624", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:19:17Z", "type": "Journal Article", "created": "2025-03-17", "title": "Exploring the Root-Associated Bacterial Community of Tomato Plants in Response to Salt Stress", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Salinity is one of the main abiotic stresses that limits plant growth. This study addressed how the composition and diversity of root-associated bacterial communities reacts over time to salt-induced stress conditions. To understand its adaptation to soil salinization, the microbiome was studied by total DNA extraction and sequencing, using the Illumina MiSeq platform. Additionally, we evaluated the plant metabolites associated with salt stress (oxylipins, fatty acids (FAs) and hormones) by mass spectrometry. Salinity reduced rhizosphere bacterial diversity in salt-treated plants at 7 and 14 days and triggered a progressive shift of the bacterial structure, starting 7 days after salt stress imposed. The bacterial rhizosphere community became enriched with specific bacteria associated with potential genes involved in the PGP trait and ion homeostasis. For these plants, metabolites that showed higher levels included 9-lipoxygenase (LOX) oxylipins, which were found at days 7 and 14. The results indicated that salinity seems to have induced changes in the rhizosphere bacterial community, with characteristics that may help the plant respond to the imposed stress. Furthermore, our study highlighted the role of 9-LOX oxylipins in responding to salinity stress, providing new insights into the complex plant\u2013microbe interactions under salt stress.</p></article>", "keywords": ["lipids", "oxylipins", "Agriculture (General)", "plant metabolome", "tomato plant", "bacterial community", "salt stress", "S1-972"]}, "links": [{"href": "https://doi.org/10.3390/agriculture15060624"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/agriculture15060624", "name": "item", "description": "10.3390/agriculture15060624", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/agriculture15060624"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-03-15T00:00:00Z"}}, {"id": "10.3390/agronomy11071387", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:19:18Z", "type": "Journal Article", "created": "2021-06-16", "title": "Going Beyond Soil Conservation with the Use of Cover Crops in Mediterranean Sloping Olive Orchards", "description": "<p>Among the agricultural practices promoted by the Common Agricultural Policy to increase soil functions, the use of cover crops is a recommended tool to improve the sustainability of Mediter-ranean woody crops such as olive orchards. However, there is a broad range of cover crop ty-pologies in relation to its implementation, control and species composition. In that sense, the in-fluence of different plant species on soil quality indicators in olive orchards remains unknown yet. This study describes the effects of four treatments based on the implementation of different ground covers (CC-NAT, CC-GRA and CC-MIX) and conventional tillage (TILL) on soil erosion, soil physicochemical and biological properties, and soil microbial communities after 8 years of cover crop establishment. Our results have demonstrated that the presence of a temporary cover crop (CC), compared to a soil under tillage (TILL), can reduce soil losses and maintain good soil physicochemical properties and modify greatly the structure and diversity of soil bacterial com-munities and its functioning. The presence of a homogeneous CC of gramineous (Lolium rigidum or Lolilum multiflorum) (CC-GR) for 8 years significantly increased the functional properties of the soil as compared to TILL; although the most significant change was a modification on the bacte-rial community composition that was clearly different from the rest of treatments. On the other hand, the use of a mixture of plant species (CC-MIX) as a CC for only two years although did not modify greatly the structure and diversity of soil bacterial communities compared to the TILL soil, induced significant changes on the functional properties of the soil, and reverted those properties to a level similar to that of an undisturbed soil that had maintained a natural cover of spontaneous vegetation for decades (CC-NAT).</p>", "keywords": ["2. Zero hunger", "0301 basic medicine", "Microbial diversity", "soil erosion", "S", "Agriculture", "04 agricultural and veterinary sciences", "metabolic activity", "15. Life on land", "Soil quality", "6. Clean water", "bacterial community composition", "03 medical and health sciences", "13. Climate action", "microbial diversity", "Bacterial community composition", "Metabolic activity", "11. Sustainability", "Soil erosion", "biochemistry", "0401 agriculture", " forestry", " and fisheries", "soil quality"]}, "links": [{"href": "http://www.mdpi.com/2073-4395/11/7/1387/pdf"}, {"href": "https://www.mdpi.com/2073-4395/11/7/1387/pdf"}, {"href": "https://doi.org/10.3390/agronomy11071387"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/agronomy11071387", "name": "item", "description": "10.3390/agronomy11071387", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/agronomy11071387"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-06-16T00:00:00Z"}}, {"id": "10.3390/agronomy13010261", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:19:18Z", "type": "Journal Article", "created": "2023-01-16", "title": "New Insights from Soil Microorganisms for Sustainable Double Rice-Cropping System with 37-Year Manure Fertilization", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Long-term intensive use of mineral fertilizers in double rice-cropping systems has led to soil acidification and soil degradation. Manure fertilization was suggested as an alternative strategy to mitigate soil degradation. However, the effects of long-term mineral and manure fertilization on rice grain yield, yield stability, soil organic carbon (SOC) content, soil total nitrogen (TN) content, and the underlying mechanisms are unclear. Based on a long-term experiment established in 1981 in southern China, we compared four treatments: no fertilizer application (Control); application of nitrogen\u2013phosphorus\u2013potassium (NPK); NPK plus green manure in early rice (M1); and M1 plus farmyard manure in late rice and rice straw return in winter (M2). Our results showed that 37 years of NPK, M1, and M2 significantly increased rice grain yield by 54%, 46%, and 72%, and yield stability by 22%, 17%, and 9%, respectively. M1 and M2 significantly increased SOC content by 39% and 23% compared to Control, respectively, whereas there was no difference between Control and NPK. Regarding soil TN content, it was significantly increased by 8%, 46%, and 20% by NPK, M1, and M2, respectively. In addition, M2 significantly increased bacterial OTU richness by 68%, Chao1 index by 79%, and altered the bacterial community composition. Changes in soil nutrient availability and bacterial Simpson index were positively correlated with the changes in grain yield, while shifts in bacterial community were closely related to yield stability. This study provides pioneer comprehensive assessments of the simultaneous responses of grain yield, yield stability, SOC and TN content, nutrient availability, and bacterial community composition to long-term mineral and manure fertilization in a double rice-cropping system. Altogether, this study spanning nearly four decades provides new perspectives for developing sustainable yet intensive rice cultivation to meet growing global demands.</p></article>", "keywords": ["2. Zero hunger", "[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", "soil nutrient", "Atmosphere", "[SDU.OCEAN] Sciences of the Universe [physics]/Ocean", " Atmosphere", "S", "Agriculture", "04 agricultural and veterinary sciences", "15. Life on land", "double rice-cropping systems", "bacterial community", "630", "6. Clean water", "sustainable agriculture", "reddish paddy soil", "0401 agriculture", " forestry", " and fisheries", "organic amendment; double rice-cropping systems; bacterial community; reddish paddy soil; soil nutrient; sustainable agriculture", "organic amendment"]}, "links": [{"href": "http://www.mdpi.com/2073-4395/13/1/261/pdf"}, {"href": "https://doi.org/10.3390/agronomy13010261"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/agronomy13010261", "name": "item", "description": "10.3390/agronomy13010261", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/agronomy13010261"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-15T00:00:00Z"}}, {"id": "10.4067/s0718-95162014005000045", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:19:37Z", "type": "Journal Article", "created": "2014-08-22", "description": "Nitrogen (N) deposition greatly affects the above ground biological composition of grasslands and soil properties. However, its influence on the relationship among soil, plant and bacterial communities remain controversy. We calculated Shannon-wiener index to measure the soil bacterial diversity based on denaturing gradient gel electrophoresis, and investigate the roles of vegetation and soil properties on the soil bacterial community under N addition. A three-year simulated N deposition experiment was conducted in a forbs community dominated by Leymus chinensis (Trin.) Tzvel. and Artemisia scoparia Wald. Et. Kit. N was added at five levels (0, 23, 46, 69, 92 kg ha -1 yr -1 ). Our results showed that N addition increased the soil microbial biomass carbon (SMBC) and soil bacterial diversity. Moderate N (23, 46, 69 kg ha -1 yr -1 ) addition increased the soil bacterial diversity, whereas excess N (92 kg ha -1 yr -1 ) addition inhibited it. The SMBC and soil bacterial diversity were related to richness of plant functional groups. In particular, SMBC had positive correlation with biomass of annuals and biennials, suggesting that the effects of the plant community on the soil bacteria could be explained by a relationship between the soil bacterial community and a subset of plant species rather than all species.", "keywords": ["Songnen grassland", "13. Climate action", "soil bacterial community", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "species richness", "15. Life on land", "Nitrogen deposition", "resource availability"], "contacts": [{"organization": "Sun, S, Xing, F, Zhao, H, Gao, Y, Bai, Z, Dong, Y,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.4067/s0718-95162014005000045"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20soil%20science%20and%20plant%20nutrition", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.4067/s0718-95162014005000045", "name": "item", "description": "10.4067/s0718-95162014005000045", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.4067/s0718-95162014005000045"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-01-01T00:00:00Z"}}, {"id": "20.500.11850/521417", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-22T16:22:30Z", "type": "Journal Article", "created": "2021-11-27", "title": "Soil chemistry, temperature and bacterial community composition drive brGDGT distributions along a subarctic elevation gradient", "description": "Open AccessOrganic Geochemistry, 163", "keywords": ["2. Zero hunger", "Chemistry", "Soil biomarkers", "13. Climate action", "Physics", "brGDGT", "Bacterial community", "brGDGT; Biomarker proxy; Bacterial community; Soil biomarkers", "15. Life on land", "Biomarker proxy", "01 natural sciences", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/20.500.11850/521417"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Organic%20Geochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "20.500.11850/521417", "name": "item", "description": "20.500.11850/521417", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/20.500.11850/521417"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-01T00:00:00Z"}}, {"id": "1959.7/uws:64039", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:22:24Z", "type": "Journal Article", "created": "2019-04-15", "title": "Effects of diet on gut microbiota of soil collembolans", "description": "The importance of diet in regulating the gut microbiome of globally distributed and functionally important soil generalist invertebrates such as collembolans remain poorly understood. Here, we studied a model collembolan (Folsomia candida) and found that diet (bacteria, plant litters, yeast, mixed food) is a critical factor in regulating the microbial diversity and community composition of this important soil organism. Collembolans fed with litter exhibited the lowest bacterial diversity and were dominated by Ochrobactrum. Conversely, collembolans fed with mixed diets resulted in the highest bacterial diversity. Our findings further suggest that microbial communities associated with different diets are linked to different levels of collembolan fitness. For example, the relative abundance of the genera of unclassified Thermogemmatisporaceae, Brevibacillus, and Novosphingobium were positively correlated with growth of the collembolans. Together, our work provides evidence that diet is a major force controlling the gut microbiome of collembolans, and is a good environmental predictor for collembolan growth, with implications for ecosystem functioning in terrestrial environments.", "keywords": ["2. Zero hunger", "0301 basic medicine", "Soil invertebrates", "0303 health sciences", "Microbiota", "Diets", "15. Life on land", "Diet", "Gastrointestinal Microbiome", "Soil", "03 medical and health sciences", "13. Climate action", "XXXXXX - Unknown", "Collembolans", "Animals", "Bacterial community", "Arthropods"]}, "links": [{"href": "https://doi.org/1959.7/uws:64039"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "1959.7/uws:64039", "name": "item", "description": "1959.7/uws:64039", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/1959.7/uws:64039"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-08-01T00:00:00Z"}}, {"id": "141405c4-3308-4ef2-ac9c-75ea0172375d", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[6.56, 47.77], [6.56, 51.57], [11.21, 51.57], [11.21, 47.77], [6.56, 47.77]]]}, "properties": {"themes": [{"concepts": [{"id": "farming"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "Soil"}, {"id": "winter wheat"}, {"id": "spring barley"}, {"id": "organic fertilizers"}, {"id": "ammonium"}, {"id": "nitrates"}, {"id": "protein quality"}], "scheme": "AGROVOC Multilingual agricultural thesaurus"}, {"concepts": [{"id": "opendata; Wheat"}, {"id": "barley"}, {"id": "organic agriculture"}, {"id": "Rhizosphere soil"}, {"id": "bulk soil"}, {"id": "microbial biomass"}, {"id": "microrespiration"}, {"id": "meta-barcode sequencing of bacterial community"}, {"id": "quantification of bacterial inoculant"}, {"id": "gluten"}, {"id": "HMW"}, {"id": "hordein"}, {"id": "ProteinZ"}, {"id": "bread quality"}, {"id": "grain storage protein"}], "scheme": "Individual"}, {"concepts": [{"id": "Boden"}], "scheme": "GEMET - INSPIRE themes, version 1.0"}], "rights": "Restrictions applied to assure the protection of privacy or intellectual property, and any special restrictions or limitations or warnings on using the resource or metadata. Reports, articles, papers, scientific and non - scientific works of any form, including tables, maps, or any other kind of output, in printed or electronic form, based in whole or in part on the data supplied, must contain an acknowledgement of the form: \"Data reused from the BonaRes Data Centre www.bonares.de. This data were created as part of the Rhizo4Bio - bread and beer's research activities.\" Although every care has been taken in preparing and testing the data, the Rhizo4Bio - bread and beer and the BonaRes Data Centre cannot guarantee that the data are correct; neither does the Rhizo4Bio - bread and beer and the BonaRes Data Centre accept any liability whatsoever for any error, missing data or omission in the data, or for any loss or damage arising from its use. The Rhizo4Bio - bread and beer and BonaRes Data Centre will not be responsible for any direct or indirect use which might be made of the data.", "updated": "2024-08-22", "type": "Dataset", "created": "2024-07-18", "language": "eng", "title": "Production of wheat and barley under reduced input in organic farming - QPCR for season I and II", "description": "QPCR data\n\nGeneral description see mother table: (https://doi.org/10.20387/bonares-vvg8-5wpb); Related datasets are listed in the metadata element 'Related Identifier'.\nDataset version 1.0", "formats": [{"name": "CSV"}], "keywords": ["Soil", "winter wheat", "spring barley", "organic fertilizers", "ammonium", "nitrates", "protein quality", "opendata; Wheat", "barley", "organic agriculture", "Rhizosphere soil", "bulk soil", "microbial biomass", "microrespiration", "meta-barcode sequencing of bacterial community", "quantification of bacterial inoculant", "gluten", "HMW", "hordein", "ProteinZ", "bread quality", "grain storage protein", "Boden"], "contacts": [{"name": "Santiago Quiroga", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Santiago.Quiroga@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0009-0001-1392-8241", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Sylvia Schnell", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["projectLeader"], "phones": [{"value": null}], "emails": [{"value": "sylvia.schnell@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-3903-6089", "name_url": "", "description": "orcid", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "ZALF", "organization": "Leibniz Centre for Agricultural Landscape Research (ZALF)", "position": "Research Platform 'Data Analysis & Simulation' - Workgroup Research Data Management", "roles": ["publisher"], "phones": [{"value": "+49 33432 82 300"}], "emails": [{"value": "dataservice@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Strasse 84"], "city": "M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": "15374", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Stefan Ratering", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Stefan.Ratering@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0001-7572-6306", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Azin Rekowski", "organization": "University of Hohenheim", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "azin.ghabelrahmat@uni-hohenheim.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-0179-663X", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Christian Z\u00f6rb", "organization": "University of Hohenheim", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Christian.zoerb@uni-hohenheim.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-0000-5138", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Sylvia Schnell", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "sylvia.schnell@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-3903-6089", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"organization": "Justus-Liebig University Giessen;University of Hohenheim", "roles": ["contributor"]}], "title_alternate": "LTE: Part 2/5, table: QPCR for season I and II"}, "links": [{"href": "https://maps.bonares.de/mapapps/resources/apps/bonares/index.html?lang=en&mid=0e018dea-ab53-461f-b454-2eaaca8c7gmd:65c", "rel": "download"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/0e018dea-ab53-461f-b454-2eaaca8c765c", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "141405c4-3308-4ef2-ac9c-75ea0172375d", "name": "item", "description": "141405c4-3308-4ef2-ac9c-75ea0172375d", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/141405c4-3308-4ef2-ac9c-75ea0172375d"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-08-22T00:00:00Z"}}, {"id": "2954315845", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:22:52Z", "type": "Journal Article", "created": "2019-06-26", "title": "Soil multifunctionality is affected by the soil environment and by microbial community composition and diversity", "description": "Microorganisms are critical in mediating carbon (C) and nitrogen (N) cycling processes in soils. Yet, it has long been debated whether the processes underlying biogeochemical cycles are affected by the composition and diversity of the soil microbial community or not. The composition and diversity of soil microbial communities can be influenced by various environmental factors, which in turn are known to impact biogeochemical processes. The objectives of this study were to test effects of multiple edaphic drivers individually and represented as the multivariate soil environment interacting with microbial community composition and diversity, and concomitantly on multiple soil functions (i.e. soil enzyme activities, soil C and N processes). We employed high-throughput sequencing (Illumina MiSeq) to analyze bacterial/archaeal and fungal community composition by targeting the 16S rRNA gene and the ITS1 region of soils collected from three land uses (cropland, grassland and forest) deriving from two bedrock forms (silicate and limestone). Based on this data set we explored single and combined effects of edaphic variables on soil microbial community structure and diversity, as well as on soil enzyme activities and several soil C and N processes. We found that both bacterial/archaeal and fungal communities were shaped by the same edaphic factors, with most single edaphic variables and the combined soil environment representation exerting stronger effects on bacterial/archaeal communities than on fungal communities, as demonstrated by (partial) Mantel tests. We also found similar edaphic controls on the bacterial/archaeal/fungal richness and diversity. Soil C processes were only directly affected by the soil environment but not affected by microbial community composition. In contrast, soil N processes were significantly related to bacterial/archaeal community composition and bacterial/archaeal/fungal richness/diversity but not directly affected by the soil environment. This indicates direct control of the soil environment on soil C processes and indirect control of the soil environment on soil N processes by structuring the microbial communities. The study further highlights the importance of edaphic drivers and microbial communities (i.e. composition and diversity) on important soil C and N processes.", "keywords": ["0301 basic medicine", "570", "550", "ECOSYSTEM MULTIFUNCTIONALITY", "BACTERIAL COMMUNITY", "106027 \u00d6kotoxikologie", "FUNGAL COMMUNITIES", "Soil functions", "Article", "03 medical and health sciences", "Microbial community composition and diversity", "CARBON-USE EFFICIENCY", "106027 Ecotoxicology", "ENZYME-ACTIVITIES", "14. Life underwater", "SDG 15 \u2013 Leben an Land", "Life Below Water", "SDG 15 - Life on Land", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "Agricultural and Veterinary Sciences", "LAND-USE", "SUBSTRATE USE EFFICIENCY", "Agronomy & Agriculture", "Biological Sciences", "15. Life on land", "6. Clean water", "TEMPERATE FOREST", "13. Climate action", "LONG-TERM N", "106022 Microbiology", "Edaphic drivers", "BAYESIAN CLASSIFIER", "Environmental Sciences"]}, "links": [{"href": "https://escholarship.org/content/qt83b3006k/qt83b3006k.pdf"}, {"href": "https://doi.org/2954315845"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2954315845", "name": "item", "description": "2954315845", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2954315845"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-09-01T00:00:00Z"}}, {"id": "3092924845", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-22T16:23:01Z", "type": "Journal Article", "created": "2020-10-17", "title": "Protists and collembolans alter microbial community composition, C\u00a0dynamics and soil aggregation in simplified consumer\u2013prey systems", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Abstract. Microbes play an essential role in soil functioning including biogeochemical cycling and soil aggregate formation. Yet, a major challenge is to link microbes to higher trophic levels and assess consequences for soil functioning. Here, we aimed to assess how microbial consumers modify microbial community composition (PLFA markers), as well as C dynamics (microbial\u00a0C use, SOC concentration and CO2 emission) and soil aggregation. We rebuilt two simplified soil consumer\u2013prey systems: a bacterial-based system comprising amoebae (Acanthamoeba castellanii) feeding on a microbial community dominated by the free-living bacterium Pseudomonas fluorescens and a fungal-based system comprising collembolans (Heteromurus nitidus) grazing on a microbial community dominated by the saprotrophic fungus Chaetomium globosum. The amoeba A. castellanii did not affect microbial biomass and composition, but it enhanced the formation of soil aggregates and tended to reduce their stability. Presumably, the dominance of P. fluorescens, able to produce antibiotic toxins in response to the attack by A. castellanii, was the main cause of the unchanged microbial community composition, and the release of bacterial extracellular compounds, such as long-chained polymeric substances or proteases, in reaction to predation was responsible for the changes in soil aggregation as a side effect. In the fungal system, collembolans significantly modified microbial community composition via consumptive and non-consumptive effects including the transport of microbes on the body surface. As expected, fungal biomass promoted soil aggregation and was reduced in the presence of H. nitidus. Remarkably, we also found an unexpected contribution of changes in bacterial community composition to soil aggregation. In both the bacterial and fungal systems, bacterial and fungal communities mainly consumed C from soil organic matter (rather than the litter added). Increased fungal biomass was associated with an increased capture of C from added litter, and the presence of collembolans levelled off this effect. Neither amoebae nor collembolans altered SOC concentrations and CO2 production. Overall, the results demonstrated that trophic interactions are important for achieving a mechanistic understanding of biological contributions to soil aggregation and may occur without major changes in C dynamics and with or without changes in the composition of the microbial community.                     </p></article>", "keywords": ["2. Zero hunger", "570", "QE1-996.5", "Acanthamoeba castellanii", "life", "agroecosystems", "Ecology", "fatty-acid analysis", "Geology", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie", "04 agricultural and veterinary sciences", "stability", "15. Life on land", "01 natural sciences", "bacterial community", "diversity", "stabilization", "Life", "13. Climate action", "QH501-531", "0401 agriculture", " forestry", " and fisheries", "QH540-549.5", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/3092924845"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biogeosciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3092924845", "name": "item", "description": "3092924845", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3092924845"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-17T00:00:00Z"}}, {"id": "3177787314", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:23:06Z", "type": "Journal Article", "created": "2021-06-16", "title": "Going beyond Soil Conservation with the Use of Cover Crops in Mediterranean Sloping Olive Orchards", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Among the agricultural practices promoted by the Common Agricultural Policy to increase soil functions, the use of cover crops is a recommended tool to improve the sustainability of Mediter-ranean woody crops such as olive orchards. However, there is a broad range of cover crop ty-pologies in relation to its implementation, control and species composition. In that sense, the in-fluence of different plant species on soil quality indicators in olive orchards remains unknown yet. This study describes the effects of four treatments based on the implementation of different ground covers (CC-NAT, CC-GRA and CC-MIX) and conventional tillage (TILL) on soil erosion, soil physicochemical and biological properties, and soil microbial communities after 8 years of cover crop establishment. Our results have demonstrated that the presence of a temporary cover crop (CC), compared to a soil under tillage (TILL), can reduce soil losses and maintain good soil physicochemical properties and modify greatly the structure and diversity of soil bacterial com-munities and its functioning. The presence of a homogeneous CC of gramineous (Lolium rigidum or Lolilum multiflorum) (CC-GR) for 8 years significantly increased the functional properties of the soil as compared to TILL; although the most significant change was a modification on the bacte-rial community composition that was clearly different from the rest of treatments. On the other hand, the use of a mixture of plant species (CC-MIX) as a CC for only two years although did not modify greatly the structure and diversity of soil bacterial communities compared to the TILL soil, induced significant changes on the functional properties of the soil, and reverted those properties to a level similar to that of an undisturbed soil that had maintained a natural cover of spontaneous vegetation for decades (CC-NAT).</p></article>", "keywords": ["0301 basic medicine", "2. Zero hunger", "Microbial diversity", "soil erosion", "S", "Agriculture", "04 agricultural and veterinary sciences", "metabolic activity", "15. Life on land", "Soil quality", "6. Clean water", "bacterial community composition", "03 medical and health sciences", "13. Climate action", "microbial diversity", "Bacterial community composition", "Metabolic activity", "11. Sustainability", "Soil erosion", "biochemistry", "0401 agriculture", " forestry", " and fisheries", "soil quality"]}, "links": [{"href": "http://www.mdpi.com/2073-4395/11/7/1387/pdf"}, {"href": "https://www.mdpi.com/2073-4395/11/7/1387/pdf"}, {"href": "https://doi.org/3177787314"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3177787314", "name": "item", "description": "3177787314", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3177787314"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-06-16T00:00:00Z"}}, {"id": "5d9f8e64-dddd-4eab-8b43-60edc34a4f46", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[6.39, 47.86], [6.39, 51.35], [10.81, 51.35], [10.81, 47.86], [6.39, 47.86]]]}, "properties": {"themes": [{"concepts": [{"id": "farming"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "Soil"}, {"id": "winter wheat"}, {"id": "spring barley"}, {"id": "organic fertilizers"}, {"id": "ammonium"}, {"id": "nitrates"}, {"id": "protein quality"}], "scheme": "AGROVOC Multilingual agricultural thesaurus"}, {"concepts": [{"id": "opendata; Wheat"}, {"id": "barley"}, {"id": "organic agriculture"}, {"id": "Rhizosphere soil"}, {"id": "bulk soil"}, {"id": "microbial biomass"}, {"id": "microrespiration"}, {"id": "meta-barcode sequencing of bacterial community"}, {"id": "quantification of bacterial inoculant"}, {"id": "gluten"}, {"id": "HMW"}, {"id": "hordein"}, {"id": "ProteinZ"}, {"id": "bread quality"}, {"id": "grain storage protein"}], "scheme": "Individual"}, {"concepts": [{"id": "Boden"}], "scheme": "GEMET - INSPIRE themes, version 1.0"}], "rights": "Restrictions applied to assure the protection of privacy or intellectual property, and any special restrictions or limitations or warnings on using the resource or metadata. Reports, articles, papers, scientific and non - scientific works of any form, including tables, maps, or any other kind of output, in printed or electronic form, based in whole or in part on the data supplied, must contain an acknowledgement of the form: \"Data reused from the BonaRes Data Centre www.bonares.de. This data were created as part of the Rhizo4Bio - bread and beer's research activities.\" Although every care has been taken in preparing and testing the data, the Rhizo4Bio - bread and beer and the BonaRes Data Centre cannot guarantee that the data are correct; neither does the Rhizo4Bio - bread and beer and the BonaRes Data Centre accept any liability whatsoever for any error, missing data or omission in the data, or for any loss or damage arising from its use. The Rhizo4Bio - bread and beer and BonaRes Data Centre will not be responsible for any direct or indirect use which might be made of the data.", "updated": "2024-08-22", "type": "Dataset", "created": "2024-07-18", "language": "eng", "title": "Production of wheat and barley under reduced input in organic farming - Metabarcoding for season I and II", "description": "Metabarcoding data\n\nGeneral description see mother table: (https://doi.org/10.20387/bonares-vvg8-5wpb); Related datasets are listed in the metadata element 'Related Identifier'.\nDataset version 1.0", "formats": [{"name": "CSV"}], "keywords": ["Soil", "winter wheat", "spring barley", "organic fertilizers", "ammonium", "nitrates", "protein quality", "opendata; Wheat", "barley", "organic agriculture", "Rhizosphere soil", "bulk soil", "microbial biomass", "microrespiration", "meta-barcode sequencing of bacterial community", "quantification of bacterial inoculant", "gluten", "HMW", "hordein", "ProteinZ", "bread quality", "grain storage protein", "Boden"], "contacts": [{"name": "Santiago Quiroga", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Santiago.Quiroga@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0009-0001-1392-8241", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Sylvia Schnell", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["projectLeader"], "phones": [{"value": null}], "emails": [{"value": "sylvia.schnell@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-3903-6089", "name_url": "", "description": "orcid", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "ZALF", "organization": "Leibniz Centre for Agricultural Landscape Research (ZALF)", "position": "Research Platform 'Data Analysis & Simulation' - Workgroup Research Data Management", "roles": ["publisher"], "phones": [{"value": "+49 33432 82 300"}], "emails": [{"value": "dataservice@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Strasse 84"], "city": "M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": "15374", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Stefan Ratering", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Stefan.Ratering@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0001-7572-6306", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Azin Rekowski", "organization": "University of Hohenheim", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "azin.ghabelrahmat@uni-hohenheim.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-0179-663X", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Christian Z\u00f6rb", "organization": "University of Hohenheim", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Christian.zoerb@uni-hohenheim.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-0000-5138", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Sylvia Schnell", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "sylvia.schnell@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-3903-6089", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"organization": "Justus-Liebig University Giessen;University of Hohenheim", "roles": ["contributor"]}], "title_alternate": "LTE: Part 2/5, table: Metabarcoding for season I and II"}, "links": [{"href": "https://maps.bonares.de/mapapps/resources/apps/bonares/index.html?lang=en&mid=0e018dea-ab53-461f-b454-2eaaca8c7gmd:65c", "rel": "download"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/0e018dea-ab53-461f-b454-2eaaca8c765c", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "5d9f8e64-dddd-4eab-8b43-60edc34a4f46", "name": "item", "description": "5d9f8e64-dddd-4eab-8b43-60edc34a4f46", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/5d9f8e64-dddd-4eab-8b43-60edc34a4f46"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-08-22T00:00:00Z"}}, {"id": "09769f37-4e01-46cd-9db3-5505c8ef97d7", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[6.42, 47.71], [6.42, 51.44], [11.07, 51.44], [11.07, 47.71], [6.42, 47.71]]]}, "properties": {"themes": [{"concepts": [{"id": "farming"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "Soil"}, {"id": "winter wheat"}, {"id": "spring barley"}, {"id": "organic fertilizers"}, {"id": "ammonium"}, {"id": "nitrates"}, {"id": "protein quality"}], "scheme": "AGROVOC Multilingual agricultural thesaurus"}, {"concepts": [{"id": "opendata; Wheat"}, {"id": "barley"}, {"id": "organic agriculture"}, {"id": "Rhizosphere soil"}, {"id": "bulk soil"}, {"id": "microbial biomass"}, {"id": "microrespiration"}, {"id": "meta-barcode sequencing of bacterial community"}, {"id": "quantification of bacterial inoculant"}, {"id": "gluten"}, {"id": "HMW"}, {"id": "hordein"}, {"id": "ProteinZ"}, {"id": "bread quality"}, {"id": "grain storage protein"}], "scheme": "Individual"}, {"concepts": [{"id": "Boden"}], "scheme": "GEMET - INSPIRE themes, version 1.0"}], "rights": "Restrictions applied to assure the protection of privacy or intellectual property, and any special restrictions or limitations or warnings on using the resource or metadata. Reports, articles, papers, scientific and non - scientific works of any form, including tables, maps, or any other kind of output, in printed or electronic form, based in whole or in part on the data supplied, must contain an acknowledgement of the form: \"Data reused from the BonaRes Data Centre www.bonares.de. This data were created as part of the Rhizo4Bio - bread and beer's research activities.\" Although every care has been taken in preparing and testing the data, the Rhizo4Bio - bread and beer and the BonaRes Data Centre cannot guarantee that the data are correct; neither does the Rhizo4Bio - bread and beer and the BonaRes Data Centre accept any liability whatsoever for any error, missing data or omission in the data, or for any loss or damage arising from its use. The Rhizo4Bio - bread and beer and BonaRes Data Centre will not be responsible for any direct or indirect use which might be made of the data.", "updated": "2024-08-22", "type": "Dataset", "created": "2024-07-18", "language": "eng", "title": "Production of wheat and barley under reduced input in organic farming - Spring Barley yield quality for season I and II", "description": "Spring Barley yield quality data\n\nGeneral description see mother table: (https://doi.org/10.20387/bonares-vvg8-5wpb); Related datasets are listed in the metadata element 'Related Identifier'.\nDataset version 1.0", "formats": [{"name": "CSV"}], "keywords": ["Soil", "winter wheat", "spring barley", "organic fertilizers", "ammonium", "nitrates", "protein quality", "opendata; Wheat", "barley", "organic agriculture", "Rhizosphere soil", "bulk soil", "microbial biomass", "microrespiration", "meta-barcode sequencing of bacterial community", "quantification of bacterial inoculant", "gluten", "HMW", "hordein", "ProteinZ", "bread quality", "grain storage protein", "Boden"], "contacts": [{"name": "Santiago Quiroga", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Santiago.Quiroga@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0009-0001-1392-8241", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Sylvia Schnell", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["projectLeader"], "phones": [{"value": null}], "emails": [{"value": "sylvia.schnell@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-3903-6089", "name_url": "", "description": "orcid", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "ZALF", "organization": "Leibniz Centre for Agricultural Landscape Research (ZALF)", "position": "Research Platform 'Data Analysis & Simulation' - Workgroup Research Data Management", "roles": ["publisher"], "phones": [{"value": "+49 33432 82 300"}], "emails": [{"value": "dataservice@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Strasse 84"], "city": "M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": "15374", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Stefan Ratering", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Stefan.Ratering@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0001-7572-6306", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Azin Rekowski", "organization": "University of Hohenheim", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "azin.ghabelrahmat@uni-hohenheim.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-0179-663X", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Christian Z\u00f6rb", "organization": "University of Hohenheim", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Christian.zoerb@uni-hohenheim.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-0000-5138", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Sylvia Schnell", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "sylvia.schnell@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-3903-6089", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"organization": "Justus-Liebig University Giessen;University of Hohenheim", "roles": ["contributor"]}], "title_alternate": "LTE: Part 2/5, table: Spring Barley yield quality for season I and II"}, "links": [{"href": "https://maps.bonares.de/mapapps/resources/apps/bonares/index.html?lang=en&mid=0e018dea-ab53-461f-b454-2eaaca8c7gmd:65c", "rel": "download"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/0e018dea-ab53-461f-b454-2eaaca8c765c", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "09769f37-4e01-46cd-9db3-5505c8ef97d7", "name": "item", "description": "09769f37-4e01-46cd-9db3-5505c8ef97d7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/09769f37-4e01-46cd-9db3-5505c8ef97d7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-08-22T00:00:00Z"}}, {"id": "PMC6837881", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-22T16:24:37Z", "type": "Journal Article", "created": "2019-06-26", "title": "Soil multifunctionality is affected by the soil environment and by microbial community composition and diversity", "description": "Microorganisms are critical in mediating carbon (C) and nitrogen (N) cycling processes in soils. Yet, it has long been debated whether the processes underlying biogeochemical cycles are affected by the composition and diversity of the soil microbial community or not. The composition and diversity of soil microbial communities can be influenced by various environmental factors, which in turn are known to impact biogeochemical processes. The objectives of this study were to test effects of multiple edaphic drivers individually and represented as the multivariate soil environment interacting with microbial community composition and diversity, and concomitantly on multiple soil functions (i.e. soil enzyme activities, soil C and N processes). We employed high-throughput sequencing (Illumina MiSeq) to analyze bacterial/archaeal and fungal community composition by targeting the 16S rRNA gene and the ITS1 region of soils collected from three land uses (cropland, grassland and forest) deriving from two bedrock forms (silicate and limestone). Based on this data set we explored single and combined effects of edaphic variables on soil microbial community structure and diversity, as well as on soil enzyme activities and several soil C and N processes. We found that both bacterial/archaeal and fungal communities were shaped by the same edaphic factors, with most single edaphic variables and the combined soil environment representation exerting stronger effects on bacterial/archaeal communities than on fungal communities, as demonstrated by (partial) Mantel tests. We also found similar edaphic controls on the bacterial/archaeal/fungal richness and diversity. Soil C processes were only directly affected by the soil environment but not affected by microbial community composition. In contrast, soil N processes were significantly related to bacterial/archaeal community composition and bacterial/archaeal/fungal richness/diversity but not directly affected by the soil environment. This indicates direct control of the soil environment on soil C processes and indirect control of the soil environment on soil N processes by structuring the microbial communities. The study further highlights the importance of edaphic drivers and microbial communities (i.e. composition and diversity) on important soil C and N processes.", "keywords": ["0301 basic medicine", "570", "550", "ECOSYSTEM MULTIFUNCTIONALITY", "BACTERIAL COMMUNITY", "106027 \u00d6kotoxikologie", "FUNGAL COMMUNITIES", "Soil functions", "Article", "03 medical and health sciences", "Microbial community composition and diversity", "CARBON-USE EFFICIENCY", "106027 Ecotoxicology", "ENZYME-ACTIVITIES", "14. Life underwater", "SDG 15 \u2013 Leben an Land", "Life Below Water", "SDG 15 - Life on Land", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "Agricultural and Veterinary Sciences", "LAND-USE", "SUBSTRATE USE EFFICIENCY", "Agronomy & Agriculture", "Biological Sciences", "15. Life on land", "6. Clean water", "TEMPERATE FOREST", "13. Climate action", "LONG-TERM N", "106022 Microbiology", "Edaphic drivers", "BAYESIAN CLASSIFIER", "Environmental Sciences"]}, "links": [{"href": "https://escholarship.org/content/qt83b3006k/qt83b3006k.pdf"}, {"href": "https://doi.org/PMC6837881"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC6837881", "name": "item", "description": "PMC6837881", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC6837881"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-09-01T00:00:00Z"}}, {"id": "9b45a17f-1f12-4bad-a5d8-89243dc51047", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[8.5, 49.81], [8.5, 53.25], [11.46, 53.25], [11.46, 49.81], [8.5, 49.81]]]}, "properties": {"themes": [{"concepts": [{"id": "farming"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "Soil"}, {"id": "forest soils"}, {"id": "subsoil"}, {"id": "carbon cycle"}, {"id": "dissolved organic carbon"}, {"id": "soil organic carbon"}, {"id": "soil respiration"}, {"id": "soil transport processes"}, {"id": "temperate forests"}, {"id": "forest litter"}, {"id": "soil sorption"}, {"id": "desorption"}, {"id": "carbon mineralization"}], "scheme": "AGROVOC Multilingual agricultural thesaurus"}, {"concepts": [{"id": "carbon storage"}, {"id": "carbon retention"}, {"id": "microbial decomposition"}, {"id": "sorption isotherms"}, {"id": "microbial community composition"}, {"id": "bacterial community composition"}, {"id": "opendata"}], "scheme": "Individual"}, {"concepts": [{"id": "Boden"}, {"id": "Gel\u00f6ster organischer Kohlenstoff"}, {"id": "Bodenprofil"}, {"id": "Organische Substanz"}, {"id": "Kohlenstoffkreislauf"}], "scheme": "GEMET - Concepts, version 2.4"}, {"concepts": [{"id": "Boden"}], "scheme": "GEMET - INSPIRE themes, version 1.0"}], "rights": "Restrictions applied to assure the protection of privacy or intellectual property, and any special restrictions or limitations or warnings on using the resource or metadata. Reports, articles, papers, scientific and non - scientific works of any form, including tables, maps, or any other kind of output, in printed or electronic form, based in whole or in part on the data supplied, must contain an acknowledgement of the form: \"Data reused from the BonaRes Data Centre www.bonares.de. This data were created as part of the SUBSOM's research activities.\"\n\nAlthough every care has been taken in preparing and testing the data, the SUBSOM and  the BonaRes Data Centre cannot guarantee that the data are correct; neither does the SUBSOM and the BonaRes Data Centre accept any liability whatsoever for any error, missing data or omission in the data, or for any loss or damage arising from its use. The SUBSOM and BonaRes Data Centre will not be responsible for any direct or indirect use which might be made of the data.", "updated": "2021-01-21", "type": "Dataset", "created": "2020-11-09", "language": "eng", "title": "Grinderwald - Mineral field incubation", "description": "This dataset includes data from a two-year field incubation of C-coated and 13C-labelled minerals (goethite and vermiculite) in the Grinderwald research forest in close vicinity to the DOC and CO2 monitoring sites. Minerals were buried in three soil depths down to 150 cm in May 2016 and removed in May 2018.\nThe dataset is a part of a larger data collection. The parent dataset is accessible via: https://doi.org/10.20387/bonares-rmtx-ttaj \n\nResearch domain: Soil Sciences\n\nResearch question: This dataset and all connected research data aim at evaluating temperate forest subsoils as potential future C-sinks.", "formats": [{"name": "CSV"}], "keywords": ["Soil", "forest soils", "subsoil", "carbon cycle", "dissolved organic carbon", "soil organic carbon", "soil respiration", "soil transport processes", "temperate forests", "forest litter", "soil sorption", "desorption", "carbon mineralization", "carbon storage", "carbon retention", "microbial decomposition", "sorption isotherms", "microbial community composition", "bacterial community composition", "opendata", "Boden", "Gel\u00f6ster organischer Kohlenstoff", "Bodenprofil", "Organische Substanz", "Kohlenstoffkreislauf", "Boden"], "contacts": [{"name": "Patrick Liebmann", "organization": "Leibniz Universit\u00e4t Hannover", "position": null, "roles": ["author"], "phones": [{"value": "+49 5117623671"}], "emails": [{"value": "liebmann@ifbk.uni-hannover.de"}], "addresses": [{"deliveryPoint": ["Herrenh\u00e4user Strasse 2"], "city": "Hannover", "administrativeArea": "Lower Saxony", "postalCode": "30419", "country": "Germany"}], "links": [{"href": {"url": "www.ORCID.org", "protocol": null, "protocol_url": "", "name": "0000-0002-0204-5857", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Timo Leinemann", "organization": "Leibniz Universit\u00e4t Hannover", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "timoleinemann@gmx.de"}], "addresses": [{"deliveryPoint": ["Herrenh\u00e4user Strasse 2"], "city": "Hannover", "administrativeArea": "Lower Saxony", "postalCode": "30419", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Patrick Wordell-Dietrich", "organization": "Technische Universit\u00e4t Dresden", "position": null, "roles": ["author"], "phones": [{"value": "+49 35146331391"}], "emails": [{"value": "patrick.wordell-dietrich@tu-dresden.de"}], "addresses": [{"deliveryPoint": ["Pienner Strasse 19"], "city": "Tharandt", "administrativeArea": "Saxony", "postalCode": "01737", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Sebastian Preusser", "organization": "Universit\u00e4t Hohenheim", "position": null, "roles": ["author"], "phones": [{"value": "+49 71145924065"}], "emails": [{"value": "s.preusser@uni-hohenheim.de"}], "addresses": [{"deliveryPoint": ["Emil-Wolff-Stra\u00dfe 27"], "city": "Stuttgart-Hohenheim", "administrativeArea": "Baden-Wuerttemberg", "postalCode": "70599", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Robert Mikutta", "organization": "Martin Luther University Halle-Wittenberg", "position": null, "roles": ["author"], "phones": [{"value": "+49 3455522530"}], "emails": [{"value": "robert.mikutta@landw.uni-halle.de"}], "addresses": [{"deliveryPoint": ["Von-Seckendorff-Platz 3"], "city": "Halle (Saale)", "administrativeArea": "Saxony-Anhalt", "postalCode": "06210", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Karsten Kalbitz", "organization": "Technische Universit\u00e4t Dresden", "position": null, "roles": ["author"], "phones": [{"value": "+49 35146331379"}], "emails": [{"value": "karsten.kalbitz@tu-dresden.de"}], "addresses": [{"deliveryPoint": ["Pienner Strasse 19"], "city": "Tharandt", "administrativeArea": "Saxony", "postalCode": "01737", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Axel Don", "organization": "Th\u00fcnen Institute of Climate-Smart Agriculture", "position": null, "roles": ["author"], "phones": [{"value": "+49 5315962641"}], "emails": [{"value": "axel.don@thuenen.de"}], "addresses": [{"deliveryPoint": ["Bundesallee 65"], "city": "Braunschweig", "administrativeArea": "Lower Saxony", "postalCode": "38116", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Ellen Kandeler", "organization": "Universit\u00e4t Hohenheim", "position": null, "roles": ["author"], "phones": [{"value": "+49 71145924220"}], "emails": [{"value": "kandeler@uni-hohenheim.de"}], "addresses": [{"deliveryPoint": ["Emil-Wolff-Stra\u00dfe 27"], "city": "Stuttgart-Hohenheim", "administrativeArea": "Baden-Wuerttemberg", "postalCode": "70599", "country": "Germany"}], "links": [{"href": null}]}, {"name": "J\u00f6rg Bachmann", "organization": "Leibniz Universit\u00e4t Hannover", "position": null, "roles": ["author"], "phones": [{"value": "+49 5117623672"}], "emails": [{"value": "bachmann@ifbk.uni-hannover.de"}], "addresses": [{"deliveryPoint": ["Herrenh\u00e4user Strasse 2"], "city": "Hannover", "administrativeArea": "Lower Saxony", "postalCode": "30419", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Bernd Marschner", "organization": "Ruhr-University Bochum", "position": null, "roles": ["author"], "phones": [{"value": "+49 2343222108"}], "emails": [{"value": "bernd.marschner@rub.de"}], "addresses": [{"deliveryPoint": ["Universit\u00e4tsstra\u00dfe 150"], "city": "Bochum", "administrativeArea": "North Rhine-Westphalia", "postalCode": "44801", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Frank Schaarschmidt", "organization": "Leibniz Universit\u00e4t Hannover", "position": null, "roles": ["author"], "phones": [{"value": "+49 5117625821"}], "emails": [{"value": "schaarschmidt@cell.uni-hannover.de"}], "addresses": [{"deliveryPoint": ["Herrenh\u00e4user Strasse 2"], "city": "Hannover", "administrativeArea": "Lower Saxony", "postalCode": "30419", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Georg Guggenberger", "organization": "Leibniz Universit\u00e4t Hannover", "position": null, "roles": ["author"], "phones": [{"value": "+49 5117622623"}], "emails": [{"value": "guggenberger@ifbk.uni-hannover.de"}], "addresses": [{"deliveryPoint": ["Herrenh\u00e4user Strasse 2"], "city": "Hannover", "administrativeArea": "Lower Saxony", "postalCode": "30419", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Georg Guggenberger", "organization": "Leibniz Universit\u00e4t Hannover", "position": null, "roles": ["projectLeader"], "phones": [{"value": "+49 5117622623"}], "emails": [{"value": "guggenberger@ifbk.uni-hannover.de"}], "addresses": [{"deliveryPoint": ["Herrenh\u00e4user Strasse 2"], "city": "Hannover", "administrativeArea": "Lower Saxony", "postalCode": "30419", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Karsten Kalbitz", "organization": "Technische Universit\u00e4t Dresden", "position": null, "roles": ["projectLeader"], "phones": [{"value": "+49 35146331379"}], "emails": [{"value": "karsten.kalbitz@tu-dresden.de"}], "addresses": [{"deliveryPoint": ["Pienner Strasse 19"], "city": "Tharandt", "administrativeArea": "Saxony", "postalCode": "01737", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Robert Mikutta", "organization": "Martin Luther University Halle-Wittenberg", "position": null, "roles": ["projectLeader"], "phones": [{"value": "+49 3455522530"}], "emails": [{"value": "robert.mikutta@landw.uni-halle.de"}], "addresses": [{"deliveryPoint": ["Von-Seckendorff-Platz 3"], "city": "Halle (Saale)", "administrativeArea": "Saxony-Anhalt", "postalCode": "06210", "country": "Germany"}], "links": [{"href": null}]}, {"name": "BonaRes Data Centre", "organization": "Leibniz Centre for Agricultural Landscape Research (ZALF)", "position": "Research Platform 'Data Analysis & Simulation' - WG Geodata", "roles": ["publisher"], "phones": [{"value": "+49 33432 82 171"}], "emails": [{"value": "bonares-datenzentrum@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Strasse 84"], "city": "M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": "15374", "country": "Germany"}], "links": [{"href": null}]}, {"organization": "Martin Luther University Halle-Wittenberg;Leibniz Universit\u00e4t Hannover;Th\u00fcnen Institute of Climate-Smart Agriculture;Universit\u00e4t Hohenheim;Technische Universit\u00e4t Dresden;Ruhr-University Bochum", "roles": ["contributor"]}]}, "links": [{"href": "https://maps.bonares.de/mapapps/resources/apps/bonares/index.html?lang=en&mid=9b45a17f-1f12-4bad-a5d8-89243dc51047", "rel": "download"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/4d9f666c-7022-418d-822b-3d1b9c2726e0", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "9b45a17f-1f12-4bad-a5d8-89243dc51047", "name": "item", "description": "9b45a17f-1f12-4bad-a5d8-89243dc51047", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/9b45a17f-1f12-4bad-a5d8-89243dc51047"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-01-21T00:00:00Z"}}, {"id": "f29fa3aa-55f9-455a-ae54-437e048a60e2", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[6.6, 47.75], [6.6, 51.96], [11.67, 51.96], [11.67, 47.75], [6.6, 47.75]]]}, "properties": {"themes": [{"concepts": [{"id": "farming"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "Soil"}, {"id": "winter wheat"}, {"id": "spring barley"}, {"id": "organic fertilizers"}, {"id": "ammonium"}, {"id": "nitrates"}, {"id": "protein quality"}], "scheme": "AGROVOC Multilingual agricultural thesaurus"}, {"concepts": [{"id": "opendata; Wheat"}, {"id": "barley"}, {"id": "organic agriculture"}, {"id": "Rhizosphere soil"}, {"id": "bulk soil"}, {"id": "microbial biomass"}, {"id": "microrespiration"}, {"id": "meta-barcode sequencing of bacterial community"}, {"id": "quantification of bacterial inoculant"}, {"id": "gluten"}, {"id": "HMW"}, {"id": "hordein"}, {"id": "ProteinZ"}, {"id": "bread quality"}, {"id": "grain storage protein"}], "scheme": "Individual"}, {"concepts": [{"id": "Boden"}], "scheme": "GEMET - INSPIRE themes, version 1.0"}], "rights": "Restrictions applied to assure the protection of privacy or intellectual property, and any special restrictions or limitations or warnings on using the resource or metadata. Reports, articles, papers, scientific and non - scientific works of any form, including tables, maps, or any other kind of output, in printed or electronic form, based in whole or in part on the data supplied, must contain an acknowledgement of the form: \"Data reused from the BonaRes Data Centre www.bonares.de. This data were created as part of the Rhizo4Bio - bread and beer's research activities.\" Although every care has been taken in preparing and testing the data, the Rhizo4Bio - bread and beer and the BonaRes Data Centre cannot guarantee that the data are correct; neither does the Rhizo4Bio - bread and beer and the BonaRes Data Centre accept any liability whatsoever for any error, missing data or omission in the data, or for any loss or damage arising from its use. The Rhizo4Bio - bread and beer and BonaRes Data Centre will not be responsible for any direct or indirect use which might be made of the data.", "updated": "2024-08-22", "type": "Dataset", "created": "2024-07-18", "language": "eng", "title": "Production of wheat and barley under reduced input in organic farming - Winter wheat yield quality for season I and II", "description": "Winter wheat yield quality data\n\nGeneral description see mother table: (https://doi.org/10.20387/bonares-vvg8-5wpb); Related datasets are listed in the metadata element 'Related Identifier'.\nDataset version 1.0", "formats": [{"name": "CSV"}], "keywords": ["Soil", "winter wheat", "spring barley", "organic fertilizers", "ammonium", "nitrates", "protein quality", "opendata; Wheat", "barley", "organic agriculture", "Rhizosphere soil", "bulk soil", "microbial biomass", "microrespiration", "meta-barcode sequencing of bacterial community", "quantification of bacterial inoculant", "gluten", "HMW", "hordein", "ProteinZ", "bread quality", "grain storage protein", "Boden"], "contacts": [{"name": "Santiago Quiroga", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Santiago.Quiroga@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0009-0001-1392-8241", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Sylvia Schnell", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["projectLeader"], "phones": [{"value": null}], "emails": [{"value": "sylvia.schnell@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-3903-6089", "name_url": "", "description": "orcid", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "ZALF", "organization": "Leibniz Centre for Agricultural Landscape Research (ZALF)", "position": "Research Platform 'Data Analysis & Simulation' - Workgroup Research Data Management", "roles": ["publisher"], "phones": [{"value": "+49 33432 82 300"}], "emails": [{"value": "dataservice@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Strasse 84"], "city": "M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": "15374", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Stefan Ratering", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Stefan.Ratering@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0001-7572-6306", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Azin Rekowski", "organization": "University of Hohenheim", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "azin.ghabelrahmat@uni-hohenheim.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-0179-663X", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Christian Z\u00f6rb", "organization": "University of Hohenheim", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Christian.zoerb@uni-hohenheim.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-0000-5138", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Sylvia Schnell", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "sylvia.schnell@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0003-3903-6089", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"organization": "Justus-Liebig University Giessen;University of Hohenheim", "roles": ["contributor"]}], "title_alternate": "LTE: Part 2/5, table: Winter wheat yield quality for season I and II"}, "links": [{"href": "https://maps.bonares.de/mapapps/resources/apps/bonares/index.html?lang=en&mid=0e018dea-ab53-461f-b454-2eaaca8c7gmd:65c", "rel": "download"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/0e018dea-ab53-461f-b454-2eaaca8c765c", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "f29fa3aa-55f9-455a-ae54-437e048a60e2", "name": "item", "description": "f29fa3aa-55f9-455a-ae54-437e048a60e2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/f29fa3aa-55f9-455a-ae54-437e048a60e2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-08-22T00:00:00Z"}}, {"id": "641d97ed-8c3b-4f55-9511-16e2bf2eaf9f", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[6.28, 47.74], [6.28, 51.99], [12.9, 51.99], [12.9, 47.74], [6.28, 47.74]]]}, "properties": {"themes": [{"concepts": [{"id": "environment"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "winter"}, {"id": "winter wheat"}, {"id": "spring barley"}, {"id": "organic fertilizers"}, {"id": "ammonium"}, {"id": "nitrates"}, {"id": "protein quality"}], "scheme": "AGROVOC Multilingual agricultural thesaurus"}, {"concepts": [{"id": "Boden"}], "scheme": "GEMET INSPIRE themes, version 1.0"}], "rights": "Restrictions applied to assure the protection of privacy or intellectual property, and any special restrictions or limitations or warnings on using the resource or metadata. Reports, articles, papers, scientific and non-scientific works of any form, including tables, maps, or any other kind of output, in printed or electronic form, based in whole or in part on the data supplied, must contain an acknowledgement of the form: \u201cData reused from the BonaRes Data Centre www.bonares.de.\u201d Although every care has been taken in preparing and testing the soil profile data, the author and BonaRes Data Centre cannot guarantee that the data are correct; neither does the author and BonaRes Data Centre accept any liability whatsoever for any error, missing data or omission in the data, or for any loss or damage arising from its use. The author and BonaRes Data Centre will not be responsible for any direct or indirect use which might be made of the data.", "updated": "2023-11-23", "type": "Dataset", "created": "2023-11-07", "language": "eng", "title": "Production of wheat and barley under reduced input in organic farming", "description": "During the last decades, organic farming has undergone a notable expansion as a common agricultural practice throughout the world. This, together with an increasing demand for fertilizer and pesticide reduction has led to consider different and new approaches. We investigate the effect of Hartmannibacter diazotrophicus strain E19, a plant growth promoting rhizobacterium, in order to enhance the production of wheat and barley under low energy input. For that, we analyze the effect of three factors: organic fertilizer (with and without, only wheat), row distance (15 cm and 50 cm), and bacterial inoculation (E19 and control) at two different organic experimental field stations (Gladbacherhof and Kleinhohenheim). The dataset provides information about different parameter determined from rhizosphere soil and root samples collected at two different developmental stages (flowering and milk/fully ripe), as well as, the grain yield, straw yield, 1000 kernel mass, and seed quality during the seasons 2020-2021 and 2021-2022. The following soil parameter were evaluated: ammonium, nitrate, carbon-nitrogen ratio, microbial biomass, the respiration activity using different carbon sources (glucose, galactose, N-acetylglucosamine, arginine). These data sets are currently under evaluation and complemented with the quantification of strain E19 from root samples through quantitative PCR (qPCR) and the metabarcoding sequencing of the bacterial communities based on 16S rRNA genes obtained from rhizosphere soil samples during the two seasons. \nData obtained for wheat quality are yield parameter (grain yield, straw yield, thousand kernel mass), protein concentration, different fractions of protein (albumin concentration, albumin percentage, gliadin concentration, gliadin percentage, glutenin concentration, glutenin percentage, gluten concentration, gluten percentage, gliadin to glutenin ratio), protein subtractions (\u03c9-gliadin, \u03b3_gliadin, \u03b1/\u03b2_gliadin, HMW, D_LMW, B_LMW, C_LMW, total LMW, HMW/LMW ratio), baking parameters (water absorption, baking loss 1 hour , loaf volume, hardness after 1 hour, hardness after 7 days, freshness retention, springiness after 1 hour, springiness after 7 days, elasticity), cations such as Fe ,Zn, Mg, K, Ca, and important metabolites such as proline, amylose and total starch were determined in order to evaluate the effect of the different factors mentioned above. \nFor barley quality, yield parameter (grain yield, straw yield, thousand kernel mass), protein concentration, different fractions of grain storage protein (albumin concentration, albumin percentage, hordein concentration, hordein percentage, glutelin concentration glutelin percentage), protein subtractions (proteinZ, C-hordein, B-hordein, Y-hordein, HMW, D_LMW, B_LMW, C_LMW, total_LMW, HMW/LMW ratio), Fe , Zn, Mg, K, Ca, proline, amylose and total starch were determined in order to evaluate the effect of the different factors. Some measurements are still in progress (IP).\n This table contains the index of all tables forming this data collection.\n\nRelated datasets are listed in the metadata element 'Related Identifier'.\nDataset version 1.0", "formats": [{"name": "CSV"}], "keywords": ["winter", "winter wheat", "spring barley", "organic fertilizers", "ammonium", "nitrates", "protein quality", "Boden", "opendata", "Wheat", "barley", "organic agriculture", "rhizosphere soil", "bulk soil", "microbial biomass", "microrespiration", "meta-barcode sequencing of bacterial community", "quantification of bacterial inoculant", "gluten", "HMW", "hordein", "ProteinZ", "bread quality", "grain storage protein"], "contacts": [{"name": "Santiago Quiroga", "organization": "Justus-Liebig University Giessen", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Santiago.Quiroga@umwelt.uni-giessen.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, 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