{"type": "FeatureCollection", "features": [{"id": "10.1016/j.apsoil.2014.06.003", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-16T16:15:30Z", "type": "Journal Article", "created": "2014-08-02", "title": "Soil Carbon Quality And Nitrogen Fertilization Structure Bacterial Communities With Predictable Responses Of Major Bacterial Phyla", "description": "Abstract Agricultural practices affect the soil ecosystem in multiple ways and the soil microbial communities represent an integrated and dynamic measure of soil status. Our aim was to test whether the soil bacterial community and the relative abundance of major bacterial phyla responded predictably to long-term organic amendments representing different carbon qualities (peat and straw) in combination with nitrogen fertilization levels and if certain bacterial groups were indicative of specific treatments. We hypothesized that the long-term treatments had created distinctly different ecological niches for soil bacteria, suitable for either fast-growing copiotrophic bacteria, or slow-growing oligotrophic bacteria. Based on terminal-restriction fragment length polymorphism of the 16S rRNA genes from the total soil bacterial community and taxa-specific quantitative real-time PCR of seven different groups, all treatments significantly affected the community structure, but nitrogen fertilization was the most important driver for changes in the relative abundances of the studied taxa. According to an indicator species analysis, the changes were largely explained by the decline in the relative abundances of Acidobacteria, Gemmatimonadetes and Verrucomicrobia with nitrogen fertilization. Conditions more favourable for copiotrophic life strategies were indicated in these plots by the decreased metabolic quotient, i.e. the ratio between basal respiration rate and soil biomass. Apart from the Alphaproteobacteria that were significantly associated with peat, no taxa were indicative of organic amendment in general. However, several significant indicators of both peat and straw were identified among the terminal restriction fragments suggesting that changes induced by the organic amendments were mainly manifested at a lower taxonomical level. Our findings strengthen the proposition that certain higher bacterial taxa adapt in an ecologically coherent way in response to changes induced by fertilization.", "keywords": ["[SDE] Environmental Sciences", "2. Zero hunger", "570", "[SDV]Life Sciences [q-bio]", "Biological indicators", "04 agricultural and veterinary sciences", "15. Life on land", "630", "[SDV] Life Sciences [q-bio]", "Nitrogen fertilization", "Soil status", "Long-term experiment", "[SDE]Environmental Sciences", "Microbial community", "[SDV.BV]Life Sciences [q-bio]/Vegetal Biology", "0401 agriculture", " forestry", " and fisheries", "Organic amendment", "[SDV.BV] Life Sciences [q-bio]/Vegetal Biology"]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2014.06.003"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2014.06.003", "name": "item", "description": "10.1016/j.apsoil.2014.06.003", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2014.06.003"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-12-01T00:00:00Z"}}, {"id": "10.15302/j-fase-2020323", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-16T16:19:19Z", "type": "Journal Article", "created": "2020-03-25", "title": "Novel soil quality indicators for the evaluation of agricultural management practices: a biological perspective", "description": "Developments in soil biology and in methods to characterize soil organic carbon can potentially deliver novel soil quality indicators that can help identify management practices able to sustain soil productivity and environmental resilience. This work aimed at synthesizing results regarding the suitability of a range of soil biological and biochemical properties as novel soil quality indicators for agricultural management. The soil properties, selected through a published literature review, comprised different labile organic carbon fractions [hydrophilic dissolved organic carbon, dissolved organic carbon, permanganate oxidizable carbon (POXC), hot water extractable carbon and particulate organic matter carbon], soil disease suppressiveness measured using a Pythium-Lepidium bioassay, nematode communities characterized by amplicon sequencing and qPCR, and microbial community level physiological profiling measured with MicroRespTM. Prior studies tested the sensitivity of each of the novel indicators to tillage and organic matter addition in ten European long-term field experiments (LTEs) and assessed their relationships with pre-existing soil quality indicators of soil functioning. Here, the results of these previous studies are brought together and interpreted relative to each other and to the broader body of literature on soil quality assessment. Reduced tillage increased carbon availability, disease suppressiveness, nematode richness and diversity, the stability and maturity of the food web, and microbial activity and functional diversity. Organic matter addition played a weaker role in enhancing soil quality, possibly due to the range of composition of the organic matter inputs used in the LTEs. POXC was the indicator that discriminated best between soil management practices, followed by nematode indices based on functional characteristics. Structural equation modeling shows that POXC has a central role in nutrient retention/supply, carbon sequestration, biodiversity conservation, erosion control and disease regulation/suppression. The novel indicators proposed here have great potential to improve existing soil quality assessment schemes. Their feasibility of application is discussed and needs for future research are outlined.", "keywords": ["2. Zero hunger", "labile carbon|long-term field experiments|organic matter addition|soil biological indicators|tillage", "Agriculture (General)", "04 agricultural and veterinary sciences", "15. Life on land", "Long-term field experiments", "6. Clean water", "Tillage", "S1-972", "12. Responsible consumption", "13. 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The QBS-ar, based on the study of microarthropod community structure, is well known as a quick and low-cost indicator to monitor soil biological quality at the farm scale. Temperature fluctuations and other climate factors in European countries may indirectly influence soil microarthropod communities by altering resource availability and microhabitat conditions. In the context of the climate crisis, along with drought and erosion threats, especially in southern Europe, it is essential to define the limits and advantages of the QBS-ar index. We applied the QBS-ar index along a warm temperature gradient at three long-term experimental sites. Our results underlined that the QBS-ar is very sensitive for detecting soil quality and treatment effects. The results suggest that the choice of sampling season is a particularly vulnerable phase, especially for southern Mediterranean sites. Air temperature and cumulative precipitation, even in the months prior to sampling, are critical factors to consider when applying the QBS-ar index in European countries. Drought periods can negatively influence the results for soil microarthropod relative abundance; however, the presence of biological forms seems to provide useful information about the effects of treatments on soil quality. This paper lays the groundwork for scaled-up QBS-ar applications considering soils and several environmental characteristics of agroecosystems in Europe. The work can contribute to the development of applications of the index, facilitating and improving the monitoring of soil biology at the field scale. Furthermore, this study can open future perspectives for the application of QBS-ar on a larger scale thanks to the implementation and updating of an open-source database.

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The QBS-ar, based on the study of microarthropod community structure, is well known as a quick and low-cost indicator to monitor soil biological quality at the farm scale. Temperature fluctuations and other climate factors in European countries may indirectly influence soil microarthropod communities by altering resource availability and microhabitat conditions. In the context of the climate crisis, along with drought and erosion threats, especially in southern Europe, it is essential to define the limits and advantages of the QBS-ar index. We applied the QBS-ar index along a warm temperature gradient at three long-term experimental sites. Our results underlined that the QBS-ar is very sensitive for detecting soil quality and treatment effects. The results suggest that the choice of sampling season is a particularly vulnerable phase, especially for southern Mediterranean sites. Air temperature and cumulative precipitation, even in the months prior to sampling, are critical factors to consider when applying the QBS-ar index in European countries. Drought periods can negatively influence the results for soil microarthropod relative abundance; however, the presence of biological forms seems to provide useful information about the effects of treatments on soil quality. This paper lays the groundwork for scaled-up QBS-ar applications considering soils and several environmental characteristics of agroecosystems in Europe. The work can contribute to the development of applications of the index, facilitating and improving the monitoring of soil biology at the field scale. Furthermore, this study can open future perspectives for the application of QBS-ar on a larger scale thanks to the implementation and updating of an open-source database.

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This work aimed at synthesizing results regarding the suitability of a range of soil biological and biochemical properties as novel soil quality indicators for agricultural management. The soil properties, selected through a published literature review, comprised different labile organic carbon fractions [hydrophilic dissolved organic carbon, dissolved organic carbon, permanganate oxidizable carbon (POXC), hot water extractable carbon and particulate organic matter carbon], soil disease suppressiveness measured using a Pythium-Lepidium bioassay, nematode communities characterized by amplicon sequencing and qPCR, and microbial community level physiological profiling measured with MicroRespTM. Prior studies tested the sensitivity of each of the novel indicators to tillage and organic matter addition in ten European long-term field experiments (LTEs) and assessed their relationships with pre-existing soil quality indicators of soil functioning. Here, the results of these previous studies are brought together and interpreted relative to each other and to the broader body of literature on soil quality assessment. Reduced tillage increased carbon availability, disease suppressiveness, nematode richness and diversity, the stability and maturity of the food web, and microbial activity and functional diversity. Organic matter addition played a weaker role in enhancing soil quality, possibly due to the range of composition of the organic matter inputs used in the LTEs. POXC was the indicator that discriminated best between soil management practices, followed by nematode indices based on functional characteristics. Structural equation modeling shows that POXC has a central role in nutrient retention/supply, carbon sequestration, biodiversity conservation, erosion control and disease regulation/suppression. The novel indicators proposed here have great potential to improve existing soil quality assessment schemes. 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