{"type": "FeatureCollection", "features": [{"id": "10.1002/jsfa.6206", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:26Z", "type": "Journal Article", "created": "2013-05-01", "title": "Effect Of Organic, Conventional And Mixed Cultivation Practices On Soil Microbial Community Structure And Nematode Abundance In A Cultivated Onion Crop", "description": "AbstractBACKGROUND

Responses of the soil microbial and nematode community to organic and conventional agricultural practices were studied using the Teagasc Kinsealy Systems Comparison trial as the experimental system. The trial is a long\uffe2\uff80\uff90term field experiment which divides conventional and organic agriculture into component pest\uffe2\uff80\uff90control and soil treatment practices. We hypothesised that management practices would affect soil ecology and used community level physiological profiles, microbial and nematode counts, and denaturing gradient gel electrophoresis (DGGE) to characterise soil microbial communities in plots used for onion (Allium cepa L.) cultivation.

RESULTS

Microbial activity and culturable bacterial counts were significantly higher under fully organic management. Culturable fungi, actinomycete and nematode counts showed a consistent trend towards higher numbers under fully organic management but these data were not statistically significant. No differences were found in the fungal/bacterial ratio. DGGE banding patterns and sequencing of excised bands showed clear differences between treatments. Putative onion fungal pathogens were predominantly sequenced under conventional soil treatment practices whilst putative soil suppressive bacterial species were predominantly sequenced from the organic pest\uffe2\uff80\uff90control treatment plots.

CONCLUSION

Organic management increased microbial activity and diversity. Sequence data was indicative of differences in functional groups and warrants further investigation. \uffc2\uffa9 2013 Society of Chemical Industry

", "keywords": ["DNA", " Bacterial", "0301 basic medicine", "Microbial diversity", "Nematoda", "Soil", "03 medical and health sciences", "Onions", "Animals", "DNA", " Fungal", "Ecosystem", "Soil Microbiology", "2. Zero hunger", "Organic Agriculture", "0303 health sciences", "Bacteria", "Denaturing Gradient Gel Electrophoresis", "0402 animal and dairy science", "Fungi", "Denaturing gradient gel electrophoresis", "Agriculture", "Biolog Eco-plates", "04 agricultural and veterinary sciences", "15. Life on land", "Community level physiological profile", "Organic agriculture", "0405 other agricultural sciences"]}, "links": [{"href": "https://doi.org/10.1002/jsfa.6206"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20the%20Science%20of%20Food%20and%20Agriculture", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/jsfa.6206", "name": "item", "description": "10.1002/jsfa.6206", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/jsfa.6206"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-06-07T00:00:00Z"}}, {"id": "10.1002/jsfa.8606", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:26Z", "type": "Journal Article", "created": "2017-07-31", "title": "How Are Arbuscular Mycorrhizal Associations Related To Maize Growth Performance During Short-Term Cover Crop Rotation?", "description": "AbstractBACKGROUND

Better cover crop management options aiming to maximize the benefits of arbuscular mycorrhizal fungi (AMF) to subsequent crops are largely unknown. We investigated the impact of cover crop management methods on maize growth performance and assemblages of AMF colonizing maize roots in a field trial. The cover crop treatments comprised Italian ryegrass, wheat, brown mustard and fallow in rotation with maize.

RESULTS

The diversity of AMF communities among cover crops used for maize management was significantly influenced by the cover crop and time course. Cover crops did not affect grain yield and aboveground biomass of subsequent maize but affected early growth. A structural equation model indicated that the root colonization, AMF diversity and maize phosphorus uptake had direct strong positive effects on yield performance.

CONCLUSION

AMF variables and maize performance were related directly or indirectly to maize grain yield, whereas root colonization had a positive effect on maize performance. AMF may be an essential factor that determines the success of cover crop rotational systems. Encouraging AMF associations can potentially benefit cover cropping systems. Therefore, it is imperative to consider AMF associations and crop phenology when making management decisions. \uffc2\uffa9 2017 Society of Chemical Industry

", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "0402 animal and dairy science", "Agriculture", "Phosphorus", "04 agricultural and veterinary sciences", "15. Life on land", "Plant Roots", "Zea mays", "Crop Production", "03 medical and health sciences", "Mycorrhizae", "Lolium", "0405 other agricultural sciences", "Soil Microbiology", "Triticum", "Mustard Plant"]}, "links": [{"href": "https://doi.org/10.1002/jsfa.8606"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20the%20Science%20of%20Food%20and%20Agriculture", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/jsfa.8606", "name": "item", "description": "10.1002/jsfa.8606", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/jsfa.8606"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-09-11T00:00:00Z"}}, {"id": "10.1002/ps.7961", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:29Z", "type": "Journal Article", "created": "2024-01-20", "title": "The effect of natural products used as pesticides on the soil microbiota: OECD 216 nitrogen transformation test fails to identify effects that were detected viaq\u2010PCR microbial abundance measurement", "description": "AbstractBACKGROUND

Natural products present an environmentally attractive alternative to synthetic pesticides which have been implicated in the off\uffe2\uff80\uff90target effect. Currently, the assessment of pesticide toxicity on soil microorganisms relies on the OECD 216 N transformation assay (OECD stands for the Organisation Economic Co\uffe2\uff80\uff90operation and Development, which is a key international standard\uffe2\uff80\uff90setting organisation). We tested the hypotheses that (i) the OECD 216 assay fails to identify unacceptable effects of pesticides on soil microbiota compared to more advanced molecular and standardized tests, and (ii) the natural products tested (dihydrochalcone, isoflavone, aliphatic phenol, and spinosad) are less toxic to soil microbiota compared to a synthetic pesticide compound (3,5\uffe2\uff80\uff90dichloraniline). We determined the following in three different soils: (i) ammonium (NH4+) and nitrate (NO3\uffe2\uff88\uff92) soil concentrations, as dictated by the OECD 216 test, and (ii) the abundance of phylogenetically (bacteria and fungi) and functionally distinct microbial groups [ammonia\uffe2\uff80\uff90oxidizing archaea (AOA) and bacteria (AOB)] using quantitative polymerase chain reaction (q\uffe2\uff80\uff90PCR).

RESULTS

All pesticides tested exhibited limited persistence, with spinosad demonstrating the highest persistence. None of the pesticides tested showed clear dose\uffe2\uff80\uff90dependent effects on NH4+ and NO3\uffe2\uff88\uff92 levels and the observed effects were <25% of the control, suggesting no unacceptable impacts on soil microorganisms. In contrast, q\uffe2\uff80\uff90PCR measurements revealed (i) distinct negative effects on the abundance of total bacteria and fungi, which were though limited to one of the studied soils, and (ii) a significant reduction in the abundance of both AOA and AOB across soils. This reduction was attributed to both natural products and 3,5\uffe2\uff80\uff90dichloraniline.

CONCLUSION

Our findings strongly advocate for a revision of the current regulatory framework regarding the toxicity of pesticides to soil microbiota, which should integrate advanced and well\uffe2\uff80\uff90standardized tools. \uffc2\uffa9 2024 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.High\uffe2\uff80\uff90resolution mass spectrometry (HRMS) has become a vital tool for dissolved organic matter (DOM) characterization. The upward trend in HRMS analysis of DOM presents challenges in data comparison and interpretation among laboratories operating instruments with differing performance and user operating conditions. It is therefore essential that the community establishes metric ranges and compositional trends for data comparison with reference samples so that data can be robustly compared among research groups. To this end, four identically prepared DOM samples were each measured by 16 laboratories, using 17 commercially purchased instruments, using positive\uffe2\uff80\uff90ion and negative\uffe2\uff80\uff90ion mode electrospray ionization (ESI) HRMS analyses. The instruments identified ~1000 common ions in both negative\uffe2\uff80\uff90 and positive\uffe2\uff80\uff90ion modes over a wide range of m/z values and chemical space, as determined by van Krevelen diagrams. Calculated metrics of abundance\uffe2\uff80\uff90weighted average indices (H/C, O/C, aromaticity, and m/z) of the commonly detected ions showed that hydrogen saturation and aromaticity were consistent for each reference sample across the instruments, while average mass and oxygenation were more affected by differences in instrument type and settings. In this paper we present 32 metric values for future benchmarking. The metric values were obtained for the four different parameters from four samples in two ionization modes and can be used in future work to evaluate the performance of HRMS instruments.BACKGROUND: In spite of increasing knowledge of allelopathic rice as an efficient component involved in paddy weed management, relatively little is known about its reproduction in response to competing weeds. Reproduction allocation of individual allelopathic rice plants in relation to monoculture and mixed culture with competing barnyardgrass in a paddy field was studied, along with analyses of soil nutrients and microbial communities to understand the potential mechanism.

RESULTS: At a 1:1 barnyardgrass and rice mixture proportion identified from a replacement series study, biomass, grain yield and major parameters of individual allelopathic rice plants at the mature stage were increased by competing barnyardgrass. There was no difference in allelopathic rice root\uffe2\uff80\uff90zone soil ammonium N and Olsen P between monoculture and mixed culture. However, mixed culture altered soil microbial biomass C and communities. When mixed with barnyardgrass, allelopathic rice root zone had an 87% increase in soil microbial biomass C. Phospholipid fatty acid (PLFA) profiling indicated that the signature lipid biomarkers of bacteria, actinobacteria and fungi were affected by mixed culture. Principal component analysis clearly identified differences in the composition of PLFA in different soil samples.

CONCLUSION: Allelopathic rice specific changes in soil microbial communities may generate a positive feedback on its own growth and reproduction in the presence of competing barnyardgrass in a given paddy system. Copyright \uffc2\uffa9 2012 Society of Chemical Industry

", "keywords": ["2. Zero hunger", "0106 biological sciences", "China", "Reproduction", "Population Dynamics", "Oryza", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "Pheromones", "Soil", "Echinochloa", "Rhizosphere", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Soil Microbiology"], "contacts": [{"organization": "Chui-Hua Kong, Peng Wang, Xiang-Rui Meng, Hanwen Ni, Ming-Li Wang,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1002/ps.3380"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Pest%20Management%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ps.3380", "name": "item", "description": "10.1002/ps.3380", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ps.3380"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-08-07T00:00:00Z"}}, {"id": "10.1002/sae2.12031", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:29Z", "type": "Journal Article", "created": "2022-11-12", "title": "Frontiers in soil ecology\u2014Insights from the World Biodiversity Forum 2022", "description": "Abstract

Global change is affecting soil biodiversity and functioning across all terrestrial ecosystems. Still, much is unknown about how soil biodiversity and function will change in the future in response to simultaneous alterations in climate and land use, as well as other environmental drivers. It is crucial to understand the direct, indirect\uffc2\uffa0and interactive effects of global change drivers on soil communities and ecosystems across environmental contexts, not only today but also in the near future. This is particularly relevant for international efforts to tackle climate change like the Paris Agreement, and considering the failure to achieve the 2020 biodiversity targets, especially the target of halting soil degradation. Here, we outline the main frontiers related to soil ecology that were presented and discussed at the thematic sessions of the World Biodiversity Forum 2022 in Davos, Switzerland. We highlight multiple frontiers of knowledge associated with data integration, causal inference, soil biodiversity and function scenarios, critical soil biodiversity facets, underrepresented drivers, global collaboration, knowledge application and transdisciplinarity, as well as policy and public communication. These identified research priorities are not only of immediate interest to the scientific community but may also be considered in research priority programmes and calls for funding.Pseudomonas putidais a Gram-negative, rod-shaped bacterium that can be encountered in diverse ecological habitats. This ubiquity is traced to its remarkably versatile metabolism, adapted to withstand physicochemical stress, and the capacity to thrive in harsh environments. Owing to these characteristics, there is a growing interest in this microbe for industrial use, and the corresponding research has made rapid progress in recent years. Hereby, strong drivers are the exploitation of cheap renewable feedstocks and waste streams to produce value-added chemicals and the steady progress in genetic strain engineering and systems biology understanding of this bacterium. Here, we summarize the recent advances and prospects in genetic engineering, systems and synthetic biology, and applications ofP. putidaas a cell factory.

Key points

\uffe2\uff80\uffa2 Pseudomonas putida advances to a global industrial cell factory.

\uffe2\uff80\uffa2 Novel tools enable system-wide understanding and streamlined genomic engineering.

\uffe2\uff80\uffa2 Applications of P. putida range from bioeconomy chemicals to biosynthetic drugs.

", "keywords": ["0301 basic medicine", "ddc:500", "0303 health sciences", "Pseudomonas putida", "EDEMP cycle", "PHA", "Systems Biology", "500", "Genomics", "Mini-Review", "Bioeconomy", "Bacterial chassis", "Lignin", "03 medical and health sciences", "/dk/atira/pure/sustainabledevelopmentgoals/affordable_and_clean_energy; name=SDG 7 - Affordable and Clean Energy", "Microbial cell factory", "13. Climate action", "Biocatalysis", "Synthetic Biology", "KT2440", "Metabolic engineering", "Biotransformation", "Synthetic biology", "Biotechnology"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1007/s00253-020-10811-9.pdf"}, {"href": "https://doi.org/10.1007/s00253-020-10811-9"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Microbiology%20and%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00253-020-10811-9", "name": "item", "description": "10.1007/s00253-020-10811-9", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00253-020-10811-9"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-08-13T00:00:00Z"}}, {"id": "10.1016/j.apsoil.2006.05.001", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:15:47Z", "type": "Journal Article", "created": "2006-06-19", "title": "Influence Of Organic And Mineral Amendments On Microbial Soil Properties And Processes", "description": "Abstract Microbial diversity in soils is considered important for maintaining sustainability of agricultural production systems. However, the links between microbial diversity and ecosystem processes are not well understood. This study was designed to gain better understanding of the effects of short-term management practices on the microbial community and how changes in the microbial community affect key soil processes. The effects of different forms of nitrogen (N) on soil biology and N dynamics was determined in two soils with organic and conventional management histories that varied in soil microbial properties but had the same fertility. The soils were amended with equal amounts of N (100\u00a0kg\u00a0ha\u22121) in organic (lupin, Lupinus angustifolius L.) and mineral form (urea), respectively. Over a 91-day period, microbial biomass C and N, dehydrogenase enzyme activity, community structure of pseudomondas (sensu stricto), actinomycetes and \u03b1 proteobacteria (by denaturing gradient gel electrophoresis (DGGE) following PCR amplification of 16S rDNA fragments) and N mineralisation were measured. Lupin amendment resulted in a two- to five-fold increase in microbial biomass and enzyme activity, while these parameters did not differ significantly between the urea and control treatments. The PCR\u2013DGGE analysis showed that the addition of mineral and organic compounds had an influence on the microbial community composition in the short term (up to 10 days) but the effects were not sustained over the 91-day incubation period. Microbial community structure was strongly influenced by the presence or lack of substrate, while the type of amendment (organic or mineral) had an effect on microbial biomass size and activity. These findings show that the addition of green manures improved soil biology by increasing microbial biomass and activity irrespective of management history, that no direct relationship existed among microbial structure, enzyme activity and N mineralisation, and that microbial community structure (by PCR\u2013DGGE) was more strongly influenced by inherent soil and environmental factors than by short-term management practices.", "keywords": ["2. Zero hunger", "570", "ANZSRC::31 Biological sciences", "nitrogen mineralisation", "urea", "ANZSRC::30 Agricultural", "04 agricultural and veterinary sciences", "15. Life on land", "630", "6. Clean water", "lupin (Lupinus angustifolius L.) green manure", "Marsden::300102 Soil biology", "veterinary and food sciences", "microbial community structure", "13. Climate action", "ANZSRC::41 Environmental sciences", "0401 agriculture", " forestry", " and fisheries", "DGGE", "organic and conventional farming practices"]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2006.05.001"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2006.05.001", "name": "item", "description": "10.1016/j.apsoil.2006.05.001", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2006.05.001"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-01-01T00:00:00Z"}}, {"id": "10.1007/s00267-009-9319-3", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:42Z", "type": "Journal Article", "created": "2009-06-15", "title": "Field Trial Assessment Of Biological, Chemical, And Physical Responses Of Soil To Tillage Intensity, Fertilization, And Grazing", "description": "Soil microbial populations can fluctuate in response to environmental changes and, therefore, are often used as biological indicators of soil quality. Soil chemical and physical parameters can also be used as indicators because they can vary in response to different management strategies. A long-term field trial was conducted to study the effects of different tillage systems (NT: no tillage, DH: disc harrow, and MP: moldboard plough), P fertilization (diammonium phosphate), and cattle grazing (in terms of crop residue consumption) in maize (Zea mays L.), sunflower (Heliantus annuus L.), and soybean (Glycine max L.) on soil biological, chemical, and physical parameters. The field trial was conducted for four crop years (2000/2001, 2001/2002, 2002/2003, and 2003/2004). Soil populations of Actinomycetes, Trichoderma spp., and Gliocladium spp. were 49% higher under conservation tillage systems, in soil amended with diammonium phosphate (DAP) and not previously grazed. Management practices also influenced soil chemical parameters, especially organic matter content and total N, which were 10% and 55% higher under NT than under MP. Aggregate stability was 61% higher in NT than in MP, 15% higher in P-fertilized soil, and also 9% higher in not grazed strips, bulk density being 12% lower in NT systems compared with MP. DAP application and the absence of grazing also reduced bulk density (3%). Using conservation tillage systems, fertilizing crops with DAP, and avoiding grazing contribute to soil health preservation and enhanced crop production.", "keywords": ["Crops", " Agricultural", "2. Zero hunger", "Soil", "13. Climate action", "Animals", "0401 agriculture", " forestry", " and fisheries", "Agriculture", "Cattle", "04 agricultural and veterinary sciences", "15. Life on land", "Soil Microbiology", "6. Clean water", "Environmental Monitoring"], "contacts": [{"organization": "M. Zuza, Claudio Oddino, G. J. March, A. Marinelli, Anal\u00eda Becker, Silvina Vargas Gil,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s00267-009-9319-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00267-009-9319-3", "name": "item", "description": "10.1007/s00267-009-9319-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00267-009-9319-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-06-16T00:00:00Z"}}, {"id": "10.1007/s00267-010-9504-4", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:42Z", "type": "Journal Article", "created": "2010-05-27", "title": "Changes In Soil Particulate Organic Matter, Microbial Biomass, And Activity Following Afforestation Of Marginal Agricultural Lands In A Semi-Arid Area Of Northeast China", "description": "Afforestation of agricultural lands has been one of the major land use changes in China in recent decades. To better understand the effect of such land use change on soil quality, we investigated selected soil physical, chemical and microbial properties (0-15 cm depth) in marginal agricultural land and a chronosequence of poplar (Populus euramericana cv. 'N3016') plantations (5-, 10-, 15- and 20-years old) in a semi-arid area of Northeast China. Soil bulk density significantly declined after conversion of agricultural lands to poplar plantations. Soil total organic carbon (TOC) and nitrogen (TN) concentrations, microbial biomass C (MBC) and potential N mineralization rate (PNM) decreased initially following afforestation of agricultural lands, and then increased with stand development. However, soil metabolic quotient (qCO(2)) exhibited a reverse trend. In addition, soil particulate organic matter C (POM-C) and N (POM-N) concentrations showed no significant changes in the first 10 years following afforestation, and then increased with stand age. These findings demonstrated that soil quality declined initially following afforestation of agricultural lands in semi-arid regions, and then recovered with stand development. Following 15 years of afforestation, many soil quality parameters recovered to the values found in agricultural land. We propose that change in soil quality with stand age should be considered in determining optimum rotation length of plantations and best management practices for afforestation programs.", "keywords": ["2. Zero hunger", "China", "Nitrogen", "Agriculture", "Forestry", "04 agricultural and veterinary sciences", "15. Life on land", "Carbon", "Soil", "Populus", "0401 agriculture", " forestry", " and fisheries", "Particulate Matter", "Biomass", "Environmental Restoration and Remediation", "Soil Microbiology", "Environmental Monitoring"], "contacts": [{"organization": "Rong Mao, De-Hui Zeng,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s00267-010-9504-4"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00267-010-9504-4", "name": "item", "description": "10.1007/s00267-010-9504-4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00267-010-9504-4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-05-28T00:00:00Z"}}, {"id": "10.1007/s00267-012-9890-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:42Z", "type": "Journal Article", "created": "2012-06-28", "title": "Changes In Labile Organic Carbon Fractions And Soil Enzyme Activities After Marshland Reclamation And Restoration In The Sanjiang Plain In Northeast China", "description": "The extensive reclamation of marshland into cropland has tremendously impacted the ecological environment of the Sanjiang Plain in northeast China. To understand the impacts of marshland reclamation and restoration on soil properties, we investigated the labile organic carbon fractions and the soil enzyme activities in an undisturbed marshland, a cultivated marshland and three marshlands that had been restored for 3, 6 and 12 years. Soil samples collected from the different management systems at a depth of 0-20 cm in July 2009 were analyzed for soil organic carbon (SOC), dissolved organic carbon (DOC), microbial biomass carbon (MBC) and easily degradable organic carbon. In addition, the activities of the invertase, \u03b2-glucosidase, urease and acid phosphatase were determined. These enzymes are involved in C, N and P cycling, respectively. Long-term cultivation resulted in decreased SOC, DOC, MBC, microbial quotient and C (invertase, \u03b2-glucosidase) and N-transforming (urease) enzyme activities compared with undisturbed marshland. After marshland restoration, the MBC and DOC concentrations and the soil invertase, \u03b2-glucosidase and urease activities increased. Soil DOC and MBC concentrations are probably the main factors responsible for the different invertase, \u03b2-glucosidase and urease activities. In addition, marshland restoration caused a significant increase in the microbial quotient, which reflects enhanced efficiency of organic substrate use by microbial biomass. Our observations demonstrated that soil quality recovered following marshland restoration. DOC, MBC and invertase, \u03b2-glucosidase and urease activities were sensitive for discriminating soil ecosystems under the different types of land use. Thus, these parameters should be considered to be indicators for detecting changes in soil quality and environmental impacts in marshlands.", "keywords": ["2. Zero hunger", "China", "Conservation of Natural Resources", "Agriculture", "04 agricultural and veterinary sciences", "15. Life on land", "Carbon", "6. Clean water", "Enzymes", "Soil", "13. Climate action", "Wetlands", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1007/s00267-012-9890-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00267-012-9890-x", "name": "item", "description": "10.1007/s00267-012-9890-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00267-012-9890-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-06-29T00:00:00Z"}}, {"id": "10.1007/s00374-002-0459-3", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:43Z", "type": "Journal Article", "created": "2003-02-13", "title": "Impact Of A Change In Tillage And Crop Residue Management Practice On Soil Chemical And Microbiological Properties In A Cereal-Producing Red Duplex Soil In Nsw, Australia", "description": "The effect of a change of tillage and crop residue management practice on the chemical and microbiological properties of a cereal-producing red duplex soil was investigated by superimposing each of three management practices (CC: conventional cultivation, stubble burnt, crop conventionally sown; DD: direct-drilling, stubble retained, no cultivation, crop direct-drilled; SI: stubble incorporated with a single cultivation, crop conventionally sown), for a 3-year period on plots previously managed with each of the same three practices for 14 years. A change from DD to CC or SI practice resulted in a significant decline, in the top 0\u20135 cm of soil, in organic C, total N, electrical conductivity, NH4-N, NO3-N, soil moisture holding capacity, microbial biomass and CO2 respiration as well as a decline in the microbial quotient (the ratio of microbial biomass C to organic C; P 0.05). However, there was a significant increase in microbial biomass and the microbial quotient in the top 0\u20135 cm of soil following the change from CC to DD or SI practice and with the change from SI to DD practice (P <0.05). Analysis of ester-linked fatty acid methyl esters (EL-FAMEs) extracted from the 0- to 5-cm and 5- to 10-cm layers of the soils of the various treatments detected changes in the FAME profiles following a change in tillage practice. A change from DD practice to SI or CC practice was associated with a significant decline in the ratio of fungal to bacterial fatty acids in the 0- to 5-cm soil (P <0.05). The results show that a change in tillage practice, particularly the cultivation of a previously minimum-tilled (direct-drilled) soil, will result in significant changes in soil chemical and microbiological properties within a 3-year period. They also show that soil microbiological properties are sensitive indicators of a change in tillage practice.", "keywords": ["2. Zero hunger", "biomass", "cellular organisms", "microbiology", "Australia", "Microbial biomass", "duplex", "04 agricultural and veterinary sciences", "Fatty acid methyl esters", "15. Life on land", "6. Clean water", "Stubble retention", "Tillage", "crop residue", "0401 agriculture", " forestry", " and fisheries", "Organic C", "Bacteria (microorganisms)", "management practice"]}, "links": [{"href": "https://doi.org/10.1007/s00374-002-0459-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biology%20and%20Fertility%20of%20Soils", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00374-002-0459-3", "name": "item", "description": "10.1007/s00374-002-0459-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00374-002-0459-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2002-05-01T00:00:00Z"}}, {"id": "10.1016/j.agee.2013.01.012", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:15:36Z", "type": "Journal Article", "created": "2013-03-20", "title": "Changes In Soil Carbon And Nitrogen Following Tillage Conversion In A Long-Term Experiment In Northern France", "description": "Although continuous no-till (NT) is recommended for erosion control and carbon sequestration, it often has a limited duration since farmers alternate between NT and full inversion tillage (FIT) to control weed infestation and avoid soil compaction. In this paper, we evaluate the effect of continuous tillage and tillage conversion of NT to FIT and vice versa on SOC and SON stocks, in a long-term experiment at Boigneville in Northern France. Continuous NT (CNT) and FIT (CFIT) treatments were established in 1991 and maintained until 2011 while half of the plots were converted in 2005: from CNT to new FIT (NFIT) and CFIT to new NT (NNT). Bulk densities and organic C and N contents were determined in 2001 and 2011 down to the old ploughing depth (opd) which was also measured. SOC and SON stocks were calculated at equivalent soil mass by correcting either bulk densities or the opd. Both methods produced very close results and similar conclusions. A typical gradient of SOC and SON concentrations vs depth was observed in CNT as opposed to a rather uniform distribution in CFIT. CNT resulted in SOC concentration in the top soil (0-5 cm) higher by 38% in 2001 and 53% in 2011 compared to CFIT. Conversely, it led to a SOC reduction in the deeper layer (ca. 10-28 cm) by 14% in 2001 and 18% in 2011. The global effect was no significant change in SOC and SON stocks between treatments over the old ploughed layer (4060 t soil ha(-1)) in both years: 43.2 and 45.0 t C ha(-1) in 2001 and 44.7 and 45.8 t C ha(-1) in 2011, in CNT and CFIT, respectively. In 2011, six years after tillage conversion, the stratification of SOC and SON had disappeared in NFIT whereas a new one had appeared in NNT with a smaller gradient than in CNT. SOC or SON stocks over the old ploughed layer did not differ significantly between treatments after 6 years of conversion: SOC stocks were 45.8, 43.2, 44.7 and 43.1 t C ha(-1) in the CFIT, NFIT, CNT and NNT treatments, respectively. Furthermore, SOC stocks below the old ploughed layer (ca. 28-40 cm) were slightly greater in FIT than in NT treatment (10.9 vs 8.7 t C ha(-1)). In this experiment, continuous or conversion tillage did not result in any C sequestration benefit. (c) 2013 Elsevier B.V. All rights reserved.", "keywords": ["IMPACTS", "[SDE] Environmental Sciences", "Soil nitrogen", "[SDV]Life Sciences [q-bio]", "SEQUESTRATION", "630", "Tillage", "MOIST", "Long-term", "ORGANIC-CARBON", "[SDV.BV]Life Sciences [q-bio]/Vegetal Biology", "Full inversion tillage", "[SDV.BV] Life Sciences [q-bio]/Vegetal Biology", "SOC", "CONSERVATION TILLAGE", "2. Zero hunger", "GREAT-PLAINS", "Soil organic carbon", "TEMPERATE", "04 agricultural and veterinary sciences", "15. Life on land", "No till", "NO-TILL", "[SDV] Life Sciences [q-bio]", "[SDE]Environmental Sciences", "0401 agriculture", " forestry", " and fisheries", "MATTER", "SYSTEM"], "contacts": [{"organization": "Dimassi, Bassem, Cohan, Jean-Pierrre, Labreuche, Jerome, Mary, Bruno, B.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2013.01.012"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2013.01.012", "name": "item", "description": "10.1016/j.agee.2013.01.012", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2013.01.012"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-04-01T00:00:00Z"}}, {"id": "10.1007/s00442-002-1130-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:49Z", "type": "Journal Article", "created": "2014-12-22", "title": "Responses Of Soil Nitrogen Dynamics In A Mojave Desert Ecosystem To Manipulations In Soil Carbon And Nitrogen Availability", "description": "We investigated the effects of changes in soil C and N availability on N mineralization, nitrification, denitrification, NH(3) volatilization, and soil respiration in the Mojave Desert. Results indicate a C limitation to microbial N cycling. Soils from underneath the canopies of Larrea tridentata (DC.) Cov., Pleuraphis rigida Thurber, and Lycium spp. exhibited higher rates of CO(2 ) flux, lower rates of NH(3) volatilization, and a decrease in inorganic N (NH(4)(+)-N and NO(3)(-)-N) with C addition. In addition to C limitation, soils from plant interspaces also exhibited a N limitation. Soils from all locations had net immobilization of N over the course of a 15-day laboratory incubation. However, soils from interspaces had lower rates of net nitrification and potential denitrification compared to soils from under plant canopies. The response to changes in C availability appears to be a short-term increase in microbial immobilization of inorganic N. Under controlled conditions, and over a longer time period, the effects of C and N availability appear to give way to larger differences due to spatial location. These findings have implications for ecosystems undergoing changes in soil C and N availability due to such processes as desertification, exotic species invasions, or elevated atmospheric CO(2) concentration.", "keywords": ["Nitrogen", "Biological Availability", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "01 natural sciences", "California", "Carbon", "Soil", "Ammonia", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Desert Climate", "Volatilization", "Ecosystem", "Soil Microbiology", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1007/s00442-002-1130-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-002-1130-2", "name": "item", "description": "10.1007/s00442-002-1130-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-002-1130-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2003-01-25T00:00:00Z"}}, {"id": "10.1007/s00442-004-1540-4", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:49Z", "type": "Journal Article", "created": "2004-03-19", "title": "Feedback Interactions Between Needle Litter Decomposition And Rhizosphere Activity", "description": "The aim of our study was to identify interactions between the decomposition of aboveground litter and rhizosphere activity. The experimental approach combined the placement of labelled litter (delta13C=-37.9 per thousand ) with forest girdling in a 35-year-old Norway spruce stand, resulting in four different treatment combinations: GL (girdled, litter), GNL (girdled, no litter), NGL (not girdled, litter), and NGNL (not girdled, no litter). Monthly sampling of soil CO2 efflux and delta13C of soil respired CO2 between May and October 2002 allowed the partitioning of the flux into that derived from the labelled litter, and that derived from native soil organic matter and roots. The effect of forest girdling on soil CO2 efflux was detectable from June (girdling took place in April), and resulted in GNL fluxes to be about 50% of NGNL fluxes by late August. The presence of litter resulted in significantly increased fluxes for the first 2 months of the experiment, with significantly greater litter derived fluxes from non-girdled plots and a significant interaction between girdling and litter treatments over the same period. For NGL collars, the additional efflux was found to originate only in part from litter decomposition, but also from the decay of native soil organic matter. In GL collars, this priming effect was not significant, indicating an active role of the rhizosphere in soil priming. The results therefore indicate mutual positive feedbacks between litter decomposition and rhizosphere activity. Soil biological analysis (microbial and fungal biomass) of the organic layers indicated greatest activity below NGL collars, and we suppose that this increase indicates the mechanism of mutual positive feedback between rhizosphere activity and litter decomposition. However, elimination of fresh C input from both above- and belowground (GNL) also resulted in greater fungal abundance than for the NGNL treatment, indicating likely changes in fungal community structure (i.e. a shift from symbiotic to saprotrophic species abundance).", "keywords": ["570", "Soil ecology", "Microbial biomass", "Models", " Biological", "630", "Soil", "Biomass", "Picea", "Forest girdling; Microbial biomass; Soil CO; 2; efflux; Soil organic matter; Stable C isotopes;", "Ecosystem", "Soil Microbiology", "Soil CO2 efflux", "Feedback", " Physiological", "Soil organic matter", "Carbon Isotopes", "Fungi", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "Microbial growth", "Stable C isotopes", "Plant Leaves", "13. Climate action", "Soils", "0401 agriculture", " forestry", " and fisheries", "Forest girdling", "Seasons"]}, "links": [{"href": "https://doi.org/10.1007/s00442-004-1540-4"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-004-1540-4", "name": "item", "description": "10.1007/s00442-004-1540-4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-004-1540-4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-05-01T00:00:00Z"}}, {"id": "10.1007/s00442-005-0191-4", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:49Z", "type": "Journal Article", "created": "2005-07-22", "title": "Fine Root Chemistry And Decomposition In Model Communities Of North-Temperate Tree Species Show Little Response To Elevated Atmospheric Co2 And Varying Soil Resource Availability", "description": "Rising atmospheric [CO2] has the potential to alter soil carbon (C) cycling by increasing the content of recalcitrant constituents in plant litter, thereby decreasing rates of decomposition. Because fine root turnover constitutes a large fraction of annual NPP, changes in fine root decomposition are especially important. These responses will likely be affected by soil resource availability and the life history characteristics of the dominant tree species. We evaluated the effects of elevated atmospheric [CO2] and soil resource availability on the production and chemistry, mycorrhizal colonization, and decomposition of fine roots in an early- and late-successional tree species that are economically and ecologically important in north temperate forests. Open-top chambers were used to expose young trembling aspen (Populus tremuloides) and sugar maple (Acer saccharum) trees to ambient (36 Pa) and elevated (56 Pa) atmospheric CO2. Soil resource availability was composed of two treatments that bracketed the range found in the Upper Lake States, USA. After 2.5 years of growth, sugar maple had greater fine root standing crop due to relatively greater allocation to fine roots (30% of total root biomass) relative to aspen (7% total root biomass). Relative to the low soil resources treatment, aspen fine root biomass increased 76% with increased soil resource availability, but only under elevated [CO2]. Sugar maple fine root biomass increased 26% with increased soil resource availability (relative to the low soil resources treatment), and showed little response to elevated [CO2]. Concentrations of N and soluble phenolics, and C/N ratio in roots were similar for the two species, but aspen had slightly higher lignin and lower condensed tannins contents compared to sugar maple. As predicted by source-sink models of carbon allocation, pooled constituents (C/N ratio, soluble phenolics) increased in response to increased relative carbon availability (elevated [CO2]/low soil resource availability), however, biosynthetically distinct compounds (lignin, starch, condensed tannins) did not always respond as predicted. We found that mycorrhizal colonization of fine roots was not strongly affected by atmospheric [CO2] or soil resource availability, as indicated by root ergosterol contents. Overall, absolute changes in root chemical composition in response to increases in C and soil resource availability were small and had no effect on soil fungal biomass or specific rates of fine root decomposition. We conclude that root contributions to soil carbon cycling will mainly be influenced by fine root production and turnover responses to rising atmospheric [CO2], rather than changes in substrate chemistry.", "keywords": ["0106 biological sciences", "Science", "Climate", "Ecology and Evolutionary Biology", "Plant Roots", "01 natural sciences", "Trees", "Sugar Maple", "Soil", "Ergosterol", "Health Sciences", "Carbon-based Secondary Compounds", "Biomass", "Cellular and Developmental Biology", "Ecosystem", "Soil Microbiology", "Atmosphere", "Fungi", "Natural Resources and Environment", "Molecular", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "Soil C Cycling", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Trembling Aspen"]}, "links": [{"href": "https://doi.org/10.1007/s00442-005-0191-4"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-005-0191-4", "name": "item", "description": "10.1007/s00442-005-0191-4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-005-0191-4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-07-23T00:00:00Z"}}, {"id": "10.1007/s00442-006-0381-8", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:49Z", "type": "Journal Article", "created": "2006-02-17", "description": "The aspen free-air CO2 and O3 enrichment (FACTS II-FACE) study in Rhinelander, Wisconsin, USA, is designed to understand the mechanisms by which young northern deciduous forest ecosystems respond to elevated atmospheric carbon dioxide (CO2) and elevated tropospheric ozone (O3) in a replicated, factorial, field experiment. Soil respiration is the second largest flux of carbon (C) in these ecosystems, and the objective of this study was to understand how soil respiration responded to the experimental treatments as these fast-growing stands of pure aspen and birch + aspen approached maximum leaf area. Rates of soil respiration were typically lowest in the elevated O3 treatment. Elevated CO2 significantly stimulated soil respiration (8-26%) compared to the control treatment in both community types over all three growing seasons. In years 6-7 of the experiment, the greatest rates of soil respiration occurred in the interaction treatment (CO2 + O3), and rates of soil respiration were 15-25% greater in this treatment than in the elevated CO2 treatment, depending on year and community type. Two of the treatments, elevated CO2 and elevated CO2 + O3, were fumigated with 13C-depleted CO2, and in these two treatments we used standard isotope mixing models to understand the proportions of new and old C in soil respiration. During the peak of the growing season, C fixed since the initiation of the experiment in 1998 (new C) accounted for 60-80% of total soil respiration. The isotope measurements independently confirmed that more new C was respired from the interaction treatment compared to the elevated CO2 treatment. A period of low soil moisture late in the 2003 growing season resulted in soil respiration with an isotopic signature 4-6 per thousand enriched in 13C compared to sample dates when the percentage soil moisture was higher. In 2004, an extended period of low soil moisture during August and early September, punctuated by a significant rainfall event, resulted in soil respiration that was temporarily 4-6 per thousand more depleted in 13C. Up to 50% of the Earth's forests will see elevated concentrations of both CO2 and O3 in the coming decades and these interacting atmospheric trace gases stimulated soil respiration in this study.", "keywords": ["0106 biological sciences", "Science", "Ecology and Evolutionary Biology", "Cell Respiration", "Acer", "Carbon Cycling", "Plant Roots", "01 natural sciences", "Trees", "Soil", "Ozone", "Stable Isotope", "Air Pollution", "Health Sciences", "\u03b4 13 C", "Global Change", "Cellular and Developmental Biology", "Betula", "Ecosystem", "Soil Microbiology", "Carbon Isotopes", "Atmosphere", "Natural Resources and Environment", "Molecular", "Carbon Dioxide", "15. Life on land", "Populus", "13. Climate action"]}, "links": [{"href": "https://doi.org/10.1007/s00442-006-0381-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-006-0381-8", "name": "item", "description": "10.1007/s00442-006-0381-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-006-0381-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-02-18T00:00:00Z"}}, {"id": "10.1007/s00442-006-0562-5", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:49Z", "type": "Journal Article", "created": "2006-10-10", "title": "Is Microbial Community Composition In Boreal Forest Soils Determined By Ph, C-To-N Ratio, The Trees, Or All Three?", "description": "In Fennoscandian boreal forests, soil pH and N supply generally increase downhill as a result of water transport of base cations and N, respectively. Simultaneously, forest productivity increases, the understory changes from ericaceous dwarf shrubs to tall herbs; in the soil, fungi decrease whereas bacteria increase. The composition of the soil microbial community is mainly thought to be controlled by the pH and C-to-N ratio of the substrate. However, the latter also determines the N supply to plants, the plant community composition, and should also affect plant allocation of C below ground to roots and a major functional group of microbes, mycorrhizal fungi. We used phospholipid fatty acids (PLFAs) to analyze the potential importance of mycorrhizal fungi by comparing the microbial community composition in a tree-girdling experiment, where tree belowground C allocation was terminated, and in a long-term (34 years) N loading experiment, with the shifts across a natural pH and N supply gradient. Both tree girdling and N loading caused a decline of ca. 45% of the fungal biomarker PLFA 18:2omega6,9, suggesting a common mechanism, i.e., that N loading caused a decrease in the C supply to ectomycorrhizal fungi just as tree girdling did. The total abundance of bacterial PLFAs did not respond to tree girdling or to N loading, in which cases the pH (of the mor layer) did not change appreciably, but bacterial PLFAs increased considerably when pH increased across the natural gradient. Fungal biomass was high only in acid soil (pH < 4.1) with a high C-to-N ratio (>38). According to a principal component analysis, the soil C-to-N ratio was as good as predictor of microbial community structure as pH. Our study thus indicated the soil C-to-N ratio, and the response of trees to this ratio, as important factors that together with soil pH influence soil microbial community composition.", "keywords": ["Sweden", "Soil", "Bacteria", "Nitrogen", "Mycorrhizae", "Fatty Acids", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "Hydrogen-Ion Concentration", "15. Life on land", "Carbon", "Soil Microbiology", "Trees"]}, "links": [{"href": "https://doi.org/10.1007/s00442-006-0562-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-006-0562-5", "name": "item", "description": "10.1007/s00442-006-0562-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-006-0562-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-10-11T00:00:00Z"}}, {"id": "10.1007/s00442-009-1490-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:50Z", "type": "Journal Article", "created": "2010-03-06", "title": "Frequent Fire Affects Soil Nitrogen And Carbon In An African Savanna By Changing Woody Cover", "description": "When tropical and sub-tropical ecosystems burn, considerable amounts of N present in the biomass fuel may be released. This ultimately results in a loss of fixed N to the atmosphere. It is often assumed that this volatilization loss of N with frequent fire will result in a reduction of plant-available N and total system N. By changing the amount of woody biomass fire may, however, also have indirect effects on N and C dynamics. Here we consider the effects of 50 years of frequent fire on total soil N and soil organic C (SOC) and total soil N in a mesic savanna in the Kruger National Park, South Africa. We also determine how changes in woody biomass may affect total soil N and SOC. We measured soil and fine root N and C concentrations as well as total soil N and SOC pools in four burning treatments, including fire exclusion, of a long-term fire experiment. Our results show that regardless of soil depth, fire treatment had no significant effect on total soil N and SOC. Our results also show that under trees total soil N and SOC concentrations of the surface soil increase, and pools of N and SOC increase to a depth of 7 cm. However, the extent to which soil N and C dynamics differed under canopies and away from canopies was dependent on fire treatment. Our results show that the effect of fire on soil N and C is mediated both through the indirect effect of changes in woody cover and the direct effects of fire (volatilization losses of nutrients). We suggest that woody thickening in this mesic savanna will have pronounced effects on long-term N and C dynamics.", "keywords": ["0106 biological sciences", "Carbon Isotopes", "Time Factors", "Nitrogen Isotopes", "Nitrogen", "Rain", "04 agricultural and veterinary sciences", "15. Life on land", "Wood", "01 natural sciences", "Carbon", "Fires", "Trees", "Soil", "South Africa", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Seasons", "Volatilization", "Ecosystem", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1007/s00442-009-1490-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-009-1490-y", "name": "item", "description": "10.1007/s00442-009-1490-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-009-1490-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-03-07T00:00:00Z"}}, {"id": "10.1007/s00442-012-2360-6", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:50Z", "type": "Journal Article", "created": "2012-05-21", "title": "Consequences Of Exclusion Of Precipitation On Microorganisms And Microbial Consumers In Montane Tropical Rainforests", "description": "The structure and functioning of decomposer systems heavily relies on soil moisture. However, this has been primarily studied in temperate ecosystems; little is known about how soil moisture affects the microfaunal food web in tropical regions. This lack of knowledge is surprising, since the microfaunal food web controls major ecosystem processes. To evaluate the role of precipitation in the structure of soil food web components (i.e., microorganisms and testate amoebae), we excluded water input by rain in montane rainforests at different altitudes in Ecuador. Rain exclusion strongly reduced microbial biomass and respiration by about 50\u00a0%, and fungal biomass by 23\u00a0%. In testate amoebae, rain exclusion decreased the density of live cells by 91\u00a0% and caused a shift in species composition at each of the altitudes studied, with ergosterol concentrations, microbial biomass, and water content explaining 25\u00a0% of the variation in species data. The results document that reduced precipitation negatively affects soil microorganisms, but that the response of testate amoebae markedly exceeds that of bacteria and fungi. This suggests that, in addition to food, low precipitation directly affects the community structure of testate amoebae, with the effect being more pronounced at lower altitudes. Overall, the results show that microorganisms and testate amoebae rapidly respond to a reduction in precipitation, with testate amoebae-representatives of higher trophic levels-being more sensitive. The results imply that precipitation and soil moisture in tropical rainforests are the main factors regulating decomposition and nutrient turnover.", "keywords": ["2. Zero hunger", "0106 biological sciences", "Tropical Climate", "Food Chain", "Rain", "Water", "15. Life on land", "01 natural sciences", "Trees", "Soil", "13. Climate action", "Community ecology - Original research", "Biomass", "Ecuador", "Amoeba", "Ecology", " Evolution", " Behavior and Systematics", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1007/s00442-012-2360-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-012-2360-6", "name": "item", "description": "10.1007/s00442-012-2360-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-012-2360-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-05-22T00:00:00Z"}}, {"id": "10.1007/s00442-012-2576-5", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:50Z", "type": "Journal Article", "created": "2013-01-22", "title": "An Alpine Treeline In A Carbon Dioxide-Rich World: Synthesis Of A Nine-Year Free-Air Carbon Dioxide Enrichment Study", "description": "Open AccessOecologia, 171 (3)", "keywords": ["Carbon cycling", "0106 biological sciences", "0301 basic medicine", "Nitrogen", "Dwarf shrub", "Carbon Dioxide", "Plant Roots", "01 natural sciences", "Trees", "Soil", "03 medical and health sciences", "Carbon cycling; Dwarf shrub; Global change; Nitrogen; Treeline conifer", "Treeline conifer", "Global change", "Ecosystem", "Plant Physiological Phenomena", "Soil Microbiology", "Switzerland"]}, "links": [{"href": "https://doi.org/10.1007/s00442-012-2576-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-012-2576-5", "name": "item", "description": "10.1007/s00442-012-2576-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-012-2576-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-01-23T00:00:00Z"}}, {"id": "10.1007/s00442-012-2578-3", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:50Z", "type": "Journal Article", "created": "2013-01-07", "title": "Effects Of Drought And N-Fertilization On N Cycling In Two Grassland Soils", "description": "Open AccessOecologia, 171 (3)", "keywords": ["[SDE] Environmental Sciences", "N2O fluxes", "550", "functional genes", "Nitrogen", "[SDV]Life Sciences [q-bio]", "Climate", "Climate Change", "Nitrification and denitrification", "enzyme activites", "Urine", "630", "10127 Institute of Evolutionary Biology and Environmental Studies", "Soil", "Quantitative PCR", "Climate change; Enzyme activities; Functional genes; Quantitative PCR; Nitrification and denitrification; N2O fluxes", "[SDV.BV]Life Sciences [q-bio]/Vegetal Biology", "Animals", "Climate change", "Enzyme activities", "[SDV.BV] Life Sciences [q-bio]/Vegetal Biology", "Ecosystem", "Soil Microbiology", "Functional genes", "Nitrogen Cycle", "Plants", "Archaea", "Droughts", "[SDV] Life Sciences [q-bio]", "1105 Ecology", " Evolution", " Behavior and Systematics", "climate change", "Genes", " Bacterial", "[SDE]Environmental Sciences", "quantitative PCR", "Denitrification", "570 Life sciences; biology", "590 Animals (Zoology)", "Cattle", "nitrification and denitrification"]}, "links": [{"href": "https://doi.org/10.1007/s00442-012-2578-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-012-2578-3", "name": "item", "description": "10.1007/s00442-012-2578-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-012-2578-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-01-08T00:00:00Z"}}, {"id": "10.1007/s00442-012-2331-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:50Z", "type": "Journal Article", "created": "2012-05-03", "title": "Legacy Effects Of Drought On Plant Growth And The Soil Food Web", "description": "Soils deliver important ecosystem services, such as nutrient provision for plants and the storage of carbon (C) and nitrogen (N), which are greatly impacted by drought. Both plants and soil biota affect soil C and N availability, which might in turn affect their response to drought, offering the potential to feed back on each other's performance. In a greenhouse experiment, we compared legacy effects of repeated drought on plant growth and the soil food web in two contrasting land-use systems: extensively managed grassland, rich in C and with a fungal-based food web, and intensively managed wheat lower in C and with a bacterial-based food web. Moreover, we assessed the effect of plant presence on the recovery of the soil food web after drought. Drought legacy effects increased plant growth in both systems, and a plant strongly reduced N leaching. Fungi, bacteria, and their predators were more resilient after drought in the grassland soil than in the wheat soil. The presence of a plant strongly affected the composition of the soil food web, and alleviated the effects of drought for most trophic groups, regardless of the system. This effect was stronger for the bottom trophic levels, whose resilience was positively correlated to soil available C. Our results show that plant belowground inputs have the potential to affect the recovery of belowground communities after drought, with implications for the functions they perform, such as C and N cycling.", "keywords": ["0106 biological sciences", "570", "Food Chain", "Nematoda", "Nitrogen", "577", "Biological Availability", "Plant Development", "Poaceae", "01 natural sciences", "Soil fauna", "Soil", "Animals", "Herbivory", "Ecosystem", "Soil Microbiology", "Triticum", "2. Zero hunger", "Bacteria", "Fungi", "Nitrogen Cycle", "Plants", "15. Life on land", "Carbon", "6. Clean water", "Droughts", "England", "13. Climate action", "Wheat"]}, "links": [{"href": "https://doi.org/10.1007/s00442-012-2331-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-012-2331-y", "name": "item", "description": "10.1007/s00442-012-2331-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-012-2331-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-05-04T00:00:00Z"}}, {"id": "10.1007/s004420050581", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:14:51Z", "type": "Journal Article", "created": "2002-08-25", "title": "Responses Of Communities Of Tropical Tree Species To Elevated Co2 In A Forest Clearing", "description": "Communities of ten species of tropical forest tree seedlings from three successional classes were grown at ambient and elevated CO2 in large open-top chambers on the edge of a forest in Panam\u00e1. Communities grew from 20\u2009cm to approximately 2\u2009m in height in 6 months. No enhancements in plant biomass accumulation occurred under elevated CO2 either in the whole communities or in growth of individual species. Reductions in leaf area index under elevated CO2 were observed, as were decreases in leaf nitrogen concentrations and increases in the C:N ratio of leaf tissue. Species tended to respond individualistically to elevated CO2, but some generalizations of how successional groupings responded could be made. Early and mid-successional species generally showed greater responses to elevated CO2 than late-successional species, particularly with respect to increases in photosynthetic rates and leaf starch concentrations, and reductions in leaf area ratio. Late-successional species showed greater increases in C:N ratios in response to elevated CO2 than did other species. Our results indicate that there may not be an increase in the growth of regenerating tropical forest under elevated CO2, but that there could be changes in soil nutrient availability because of reductions in leaf tissue quality, particularly in late-successional species.", "keywords": ["Successional status", "0106 biological sciences", "Biomass allocation", "Leaf chemistry", "1060 Biologie", "Elevated CO2", "Tropical forest tree species", "1060 Biology", "15. Life on land", "2303 Ecology", "01 natural sciences"]}, "links": [{"href": "https://doi.org/10.1007/s004420050581"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s004420050581", "name": "item", "description": "10.1007/s004420050581", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s004420050581"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1998-08-10T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Biology&offset=50&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Biology&offset=50&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "prev", "title": "items (prev)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Biology&offset=0", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Biology&offset=100", "hreflang": "en-US"}], "numberMatched": 1701, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-07-26T09:25:22.677961Z"}