{"type": "FeatureCollection", "features": [{"id": "10.1038/s41477-023-01583-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:16:46Z", "type": "Journal Article", "created": "2023-12-04", "title": "Subtilase-mediated biogenesis of the expanded family of SERINE RICH ENDOGENOUS PEPTIDES", "description": "Plant signalling peptides are typically released from larger precursors by proteolytic cleavage to regulate plant growth, development and stress responses. Recent studies reported the characterization of a divergent family of Brassicaceae-specific peptides, SERINE RICH ENDOGENOUS PEPTIDES (SCOOPs), and their perception by the leucine-rich repeat receptor kinase MALE DISCOVERER 1-INTERACTING RECEPTOR-LIKE KINASE 2 (MIK2). Here, we reveal that the SCOOP family is highly expanded, containing at least 50 members in the Columbia-0 reference Arabidopsis thaliana genome. Notably, perception of these peptides is strictly MIK2-dependent. How bioactive SCOOP peptides are produced, and to what extent their perception is responsible for the multiple physiological roles associated with MIK2 are currently unclear. Using N-terminomics, we validate the N-terminal cleavage site of representative PROSCOOPs. The cleavage sites are determined by conserved motifs upstream of the minimal SCOOP bioactive epitope. We identified subtilases necessary and sufficient to process PROSCOOP peptides at conserved cleavage motifs. Mutation of these subtilases, or their recognition motifs, suppressed PROSCOOP cleavage and associated overexpression phenotypes. Furthermore, we show that higher-order mutants of these subtilases show phenotypes reminiscent of mik2 null mutant plants, consistent with impaired PROSCOOP biogenesis, and demonstrating biological relevance of SCOOP perception by MIK2. Together, this work provides insights into the molecular mechanisms underlying the functions of the recently identified SCOOP peptides and their receptor MIK2.", "keywords": ["570", "Arabidopsis Proteins", "[SDV]Life Sciences [q-bio]", "Arabidopsis", "Receptors", " Cell Surface", "580 Plants (Botany)", "[SDV] Life Sciences [q-bio]", "10126 Department of Plant and Microbial Biology", "1110 Plant Science", "Taverne", "Brassicaceae", "Serine", "Life Science", "10211 Zurich-Basel Plant Science Center", "Peptides", "Protein Kinases"]}, "links": [{"href": "https://www.nature.com/articles/s41477-023-01583-x.pdf"}, {"href": "https://hal.science/hal-04394015/file/NaturePlants_subtilase_scoop_2023_revised.pdf"}, {"href": "https://doi.org/10.1038/s41477-023-01583-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Plants", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41477-023-01583-x", "name": "item", "description": "10.1038/s41477-023-01583-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41477-023-01583-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-04T00:00:00Z"}}, {"id": "10.1111/nph.18873", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:17:54Z", "type": "Journal Article", "created": "2023-03-13", "title": "Effective root responses to salinity stress include maintained cell expansion and carbon allocation", "description": "Summary<p><p>Acclimation of root growth is vital for plants to survive salt stress. Halophytes are great examples of plants that thrive even under severe salinity, but their salt tolerance mechanisms, especially those mediated by root responses, are still largely unknown.</p><p>We compared root growth responses of the halophyteSchrenkiella parvulawith its glycophytic relative speciesArabidopsis thalianaunder salt stress and performed transcriptomic analysis ofS.\uffc2\uffa0parvularoots to identify possible gene regulatory networks underlying their physiological responses.</p><p>Schrenkiella parvularoots do not avoid salt and experience less growth inhibition under salt stress. Salt\uffe2\uff80\uff90induced abscisic acid levels were higher inS.\uffc2\uffa0parvularoots compared with Arabidopsis. Root transcriptomic analysis ofS.\uffc2\uffa0parvularevealed the induction of sugar transporters and genes regulating cell expansion and suberization under salt stress.14C\uffe2\uff80\uff90labeled carbon partitioning analyses showed thatS.\uffc2\uffa0parvulacontinued allocating carbon to roots from shoots under salt stress while carbon barely allocated to Arabidopsis roots. Further physiological investigation revealed thatS.\uffc2\uffa0parvularoots maintained root cell expansion and enhanced suberization under severe salt stress.</p><p>In summary, roots ofS.\uffc2\uffa0parvuladeploy multiple physiological and developmental adjustments under salt stress to maintain growth, providing new avenues to improve salt tolerance of plants using root\uffe2\uff80\uff90specific strategies.</p></p", "keywords": ["2. Zero hunger", "Salinity", "root growth", "halophytes", "Arabidopsis", "Salt-Tolerant Plants", "Salt Tolerance", "15. 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To date, the actual field potential of Brassica species and the feasibility of a complete phytoextraction process have not been fully evaluated. Therefore, the aim of this study was to summarize the results of the experiments that have been performed with a view to analyzing real potentials and limitations. The reduced biomass and low metal mobility in the soil have been addressed by the development of chemically or biologically assisted phytoremediation technologies, the use of soil amendments, and the application of crop management strategies. Certain issues, such as the fate of harvested biomass or the performance of species in multi-metal-contaminated soils, remain to be solved by future research. Potential improvements to current experimental settings include testing species grown to full maturity, using a greater amount of soil in experiments, conducting more trials under real field conditions, developing improved crop management systems, and optimizing solutions for harvested biomass disposal.</p></article>", "keywords": ["2. Zero hunger", "biomass", "metal", "<i>Brassicaceae</i>", "Botany", "metals", "contaminated soils", "field trials", "Review", "15. Life on land", "assisted phytoextraction", "01 natural sciences", "contaminated soil", "QK1-989", "Brassicaceae", "brassicas", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.mdpi.com/2223-7747/10/11/2340/pdf"}, {"href": "https://doi.org/10.3390/plants10112340"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plants", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/plants10112340", "name": "item", "description": "10.3390/plants10112340", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/plants10112340"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-29T00:00:00Z"}}, {"id": "20.500.11850/607834", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:22:36Z", "type": "Journal Article", "created": "2023-03-13", "title": "Effective root responses to salinity stress include maintained cell expansion and carbon allocation", "description": "Summary                   <p>                                                                     <p>Acclimation of root growth is vital for plants to survive salt stress. Halophytes are great examples of plants that thrive even under severe salinity, but their salt tolerance mechanisms, especially those mediated by root responses, are still largely unknown.</p>                                                                       <p>                           We compared root growth responses of the halophyte                           Schrenkiella parvula                           with its glycophytic relative species                           Arabidopsis thaliana                           under salt stress and performed transcriptomic analysis of                           S.\uffc2\uffa0parvula                           roots to identify possible gene regulatory networks underlying their physiological responses.                         </p>                                                                       <p>                           Schrenkiella parvula                           roots do not avoid salt and experience less growth inhibition under salt stress. Salt\uffe2\uff80\uff90induced abscisic acid levels were higher in                           S.\uffc2\uffa0parvula                           roots compared with Arabidopsis. Root transcriptomic analysis of                           S.\uffc2\uffa0parvula                           revealed the induction of sugar transporters and genes regulating cell expansion and suberization under salt stress.                           14                           C\uffe2\uff80\uff90labeled carbon partitioning analyses showed that                           S.\uffc2\uffa0parvula                           continued allocating carbon to roots from shoots under salt stress while carbon barely allocated to Arabidopsis roots. Further physiological investigation revealed that                           S.\uffc2\uffa0parvula                           roots maintained root cell expansion and enhanced suberization under severe salt stress.                         </p>                                                                       <p>                           In summary, roots of                           S.\uffc2\uffa0parvula                           deploy multiple physiological and developmental adjustments under salt stress to maintain growth, providing new avenues to improve salt tolerance of plants using root\uffe2\uff80\uff90specific strategies.                         </p>                                                               </p", "keywords": ["2. Zero hunger", "Salinity", "root growth", "halophytes", "Arabidopsis", "Salt-Tolerant Plants", "Salt Tolerance", "15. Life on land", "Plant Roots", "Carbon", "Stress", " Physiological", "Gene Expression Regulation", " Plant", "Brassicaceae", "carbon partitioning", "carbon partitioning; cell expansion; halophytes; root growth; salt stress; Schrenkiella parvula", "cell expansion", "Schrenkiella parvula", "salt stress"]}, "links": [{"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.18873"}, {"href": "https://doi.org/20.500.11850/607834"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "20.500.11850/607834", "name": "item", "description": "20.500.11850/607834", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/20.500.11850/607834"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-03-29T00:00:00Z"}}, {"id": "3208294133", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:23:14Z", "type": "Journal Article", "created": "2021-11-02", "title": "Brassica Species in Phytoextractions: Real Potentials and Challenges", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The genus Brassica is recognized for including species with phytoaccumulation potential and a large amount of research has been carried out in this area under a variety of conditions, from laboratory experiments to field trials, with spiked or naturally contaminated soils, using one- or multi-element contaminated soil, generating various and sometimes contradictory results with limited practical applications. To date, the actual field potential of Brassica species and the feasibility of a complete phytoextraction process have not been fully evaluated. Therefore, the aim of this study was to summarize the results of the experiments that have been performed with a view to analyzing real potentials and limitations. The reduced biomass and low metal mobility in the soil have been addressed by the development of chemically or biologically assisted phytoremediation technologies, the use of soil amendments, and the application of crop management strategies. Certain issues, such as the fate of harvested biomass or the performance of species in multi-metal-contaminated soils, remain to be solved by future research. Potential improvements to current experimental settings include testing species grown to full maturity, using a greater amount of soil in experiments, conducting more trials under real field conditions, developing improved crop management systems, and optimizing solutions for harvested biomass disposal.</p></article>", "keywords": ["2. Zero hunger", "biomass", "metal", "<i>Brassicaceae</i>", "Botany", "metals", "contaminated soils", "field trials", "Review", "15. 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Recent studies reported the characterization of a divergent family of Brassicaceae-specific peptides, SERINE RICH ENDOGENOUS PEPTIDES (SCOOPs), and their perception by the leucine-rich repeat receptor kinase MALE DISCOVERER 1-INTERACTING RECEPTOR-LIKE KINASE 2 (MIK2). Here, we reveal that the SCOOP family is highly expanded, containing at least 50 members in the Columbia-0 reference Arabidopsis thaliana genome. Notably, perception of these peptides is strictly MIK2-dependent. How bioactive SCOOP peptides are produced, and to what extent their perception is responsible for the multiple physiological roles associated with MIK2 are currently unclear. Using N-terminomics, we validate the N-terminal cleavage site of representative PROSCOOPs. The cleavage sites are determined by conserved motifs upstream of the minimal SCOOP bioactive epitope. We identified subtilases necessary and sufficient to process PROSCOOP peptides at conserved cleavage motifs. Mutation of these subtilases, or their recognition motifs, suppressed PROSCOOP cleavage and associated overexpression phenotypes. Furthermore, we show that higher-order mutants of these subtilases show phenotypes reminiscent of mik2 null mutant plants, consistent with impaired PROSCOOP biogenesis, and demonstrating biological relevance of SCOOP perception by MIK2. Together, this work provides insights into the molecular mechanisms underlying the functions of the recently identified SCOOP peptides and their receptor MIK2.", "keywords": ["570", "Arabidopsis Proteins", "[SDV]Life Sciences [q-bio]", "Arabidopsis", "Receptors", " Cell Surface", "580 Plants (Botany)", "[SDV] Life Sciences [q-bio]", "10126 Department of Plant and Microbial Biology", "1110 Plant Science", "Taverne", "Brassicaceae", "Serine", "Life Science", "10211 Zurich-Basel Plant Science Center", "Peptides", "Protein Kinases"]}, "links": [{"href": "https://www.nature.com/articles/s41477-023-01583-x.pdf"}, {"href": "https://hal.science/hal-04394015/file/NaturePlants_subtilase_scoop_2023_revised.pdf"}, {"href": "https://doi.org/38049516"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Plants", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "38049516", "name": "item", "description": "38049516", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/38049516"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-04T00:00:00Z"}}, {"id": "PMC8617981", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:24:43Z", "type": "Journal Article", "created": "2021-11-01", "title": "Brassica Species in Phytoextractions: Real Potentials and Challenges", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The genus Brassica is recognized for including species with phytoaccumulation potential and a large amount of research has been carried out in this area under a variety of conditions, from laboratory experiments to field trials, with spiked or naturally contaminated soils, using one- or multi-element contaminated soil, generating various and sometimes contradictory results with limited practical applications. To date, the actual field potential of Brassica species and the feasibility of a complete phytoextraction process have not been fully evaluated. Therefore, the aim of this study was to summarize the results of the experiments that have been performed with a view to analyzing real potentials and limitations. The reduced biomass and low metal mobility in the soil have been addressed by the development of chemically or biologically assisted phytoremediation technologies, the use of soil amendments, and the application of crop management strategies. Certain issues, such as the fate of harvested biomass or the performance of species in multi-metal-contaminated soils, remain to be solved by future research. 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