Plant species turnover in central Panamanian forests has been principally attributed to the effects of dispersal limitation and a strong Caribbean to Pacific gradient in rainfall seasonality. Despite marked geological heterogeneity, the role of soil variation has not been rigorously examined.
We modelled the compositional turnover of trees and ferns in the Panama Canal watershed as a function of soil chemistry, climate and geographical separation, using generalized dissimilarity models (GDMs).
Predictability in both plant groups was strong, with 74% of turnover explained in trees and 49% in ferns. Major trends in the two plant groups were strikingly similar. The independent effects of soils, and of climate for trees, were sizeable, but those of geographical distance were minor. In both plant groups, distance and climatic effects on species turnover covaried strongly.
Including floristic dissimilarity of the other taxon as a predictor increased explained deviance to 81% in trees and 59% in ferns. Controlling for differences in plant density among plots reduced deviance explained by climate and distance, while soil effects remained strong. Limiting the analyses to soils of volcanic origin increased deviance explained by climate, soils and distance, but their effects covaried strongly. Independent soil effects on tree turnover were reduced, but their effects on fern turnover remained pronounced.
Dry season length was the most important climatic predictor for both taxa, and P and pH were the most important soil predictors. Particularly, rapid species turnover was associated with the driest end of the seasonality gradient, linked to declining individual densities and species richness, and with the low end of the phosphorus gradient.
Synthesis. While changes in rainfall and seasonality undoubtedly limit plant distributions in this region, soil effects are at least as important, and interactions between the two are sizeable. This is likely to hold elsewhere in the Caribbean region, where mosaics of marine and volcanic soils combined with pronounced rainfall gradients are common. Strong congruence between our focal taxa suggests that our results can be extrapolated to other plant groups, particularly as trees and ferns are distantly related and represent different life\uffe2\uff80\uff90forms.
", "keywords": ["0106 biological sciences", "biotic interactions", " determinants of plant community diversity and structure", " edaphic variation", " environmental control", " matrix regression", " precipitation", " Pteridophyta", " seed and spore dispersal", " tropical forests", " turnover rates", "15. Life on land", "01 natural sciences"]}, "links": [{"href": "https://doi.org/10.1111/1365-2745.12053"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2745.12053", "name": "item", "description": "10.1111/1365-2745.12053", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2745.12053"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-01-14T00:00:00Z"}}, {"id": "10.1007/s10980-020-00984-z", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:14:48Z", "type": "Journal Article", "created": "2020-03-10", "title": "Global vulnerability of soil ecosystems to erosion", "description": "Abstract ContextSoil erosion is one of the main threats driving soil degradation across the globe with important impacts on crop yields, soil biota, biogeochemical cycles, and ultimately human nutrition.
ObjectivesHere, using an empirical model, we present a global and temporally explicit assessment of soil erosion risk according to recent (2001\uffe2\uff80\uff932013) dynamics of rainfall and vegetation cover change to identify vulnerable areas for soils and soil biodiversity.
MethodsWe used an adaptation of the Universal Soil Loss Equation together with state of the art remote sensing models to create a spatially and temporally explicit global model of soil erosion and soil protection. Finally, we overlaid global maps of soil biodiversity to assess the potential vulnerability of these soil communities to soil erosion.
ResultsWe show a consistent decline in soil erosion protection over time across terrestrial biomes, which resulted in a global increase of 11.7% in soil erosion rates. Notably, soil erosion risk systematically increased between 2006 and 2013 in relation to the baseline year (2001). Although vegetation cover is central to soil protection, this increase was mostly driven by changes in rainfall erosivity. Globally, soil erosion is expected not only to have an impact on the vulnerability of soil conditions but also on soil biodiversity with 6.4% (for soil macrofauna) and 7.6% (for soil fungi) of these vulnerable areas coinciding with regions with high soil biodiversity.
ConclusionsOur results indicate that an increasing proportion of soils are degraded globally, affecting not only livelihoods but also potentially degrading local and regional landscapes. Similarly, many degraded regions coincide with and may have impacted high levels of soil biodiversity.75\u00a0years) grazing during spring (SPG), summer (SUG), winter (WG) and exclosure (non-grazed control) treatments on soil nutrients, penetration resistance and infiltration tests. A soil sampling campaign was carried out to collect soil to a depth of 60\u00a0cm to analyse bulk density, soil physical and chemical parameters as well as soil compaction and infiltration. Generally, grazing treatments reduced soil organic C (SOC) stocks and C:N ratios, and modified soil properties. There was higher SOC stock (0.128\u00a0Mg\u00a0ha\u22121\u00a0yr\u22121) in the exclosure than in the SPG (0.096\u00a0Mg\u00a0ha\u22121\u00a0yr\u22121), SUG (0.099\u00a0Mg\u00a0ha\u22121\u00a0yr\u22121) and WG (0.105\u00a0Mg\u00a0ha\u22121\u00a0yr\u22121). The C:N ratios exhibited similar pattern to that of C. From the grazing treatments, the WG demonstrated 7 to 10\u00a0% additional SOC stock over the SPG and SUG, respectively. Short period animal exclusion could be an option to be considered to improve plant nutrients in sandy soils of South Africa. However, this may require a policy environment which supports stock exclusion from such areas vulnerable to land degradation, nutrient and C losses by grazing-induced vegetation and landscape changes.", "keywords": ["2. Zero hunger", "Soil organic carbon", "[SDE.MCG]Environmental Sciences/Global Changes", "Exclosure", "04 agricultural and veterinary sciences", "Total nitrogen", "15. Life on land", "630", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "[SDE.MCG] Environmental Sciences/Global Changes", "Grazing season", "\u00e9cosyst\u00e8me aride", "13. Climate action", "Arid ecosystem", "mati\u00e8re organique", "saison de p\u00e2turage", "carbone organique du sol", "0401 agriculture", " forestry", " and fisheries", "Organic matter", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "azote total"]}, "links": [{"href": "https://doi.org/10.1007/s11104-015-2625-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-015-2625-z", "name": "item", "description": "10.1007/s11104-015-2625-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-015-2625-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-08-09T00:00:00Z"}}, {"id": "10.1007/s11104-017-3369-8", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-08-25T16:14:55Z", "type": "Journal Article", "created": "2017-08-22", "title": "Thaw Pond Development And Initial Vegetation Succession In Experimental Plots At A Siberian Lowland Tundra Site", "description": "
Background and aims: Permafrost degradation has the potential to change the Arctic tundra landscape. We observed rapid local thawing of ice-rich permafrost resulting in thaw pond formation, which was triggered by removal of the shrub cover in a field experiment. This study aimed to examine the rate of permafrost thaw and the initial vegetation succession after the permafrost collapse. Methods: In the experiment, we measured changes in soil thaw depth, plant species cover and soil subsidence over nine years (2007\u20132015). Results: After abrupt initial thaw, soil subsidence in the removal plots continued indicating further thawing of permafrost albeit at a much slower pace: 1 cm y\u22121 over 2012\u20132015 vs. 5 cm y\u22121 over 2007\u20132012. Grass cover strongly increased after the initial shrub removal, but later declined with ponding of water in the subsiding removal plots. Sedges established and expanded in the wetter removal plots. Thereby, the removal plots have become increasingly similar to nearby \u2018natural\u2019 thaw ponds. Conclusions: The nine years of field observations in a unique shrub removal experiment at a Siberian tundra site document possible trajectories of small-scale permafrost collapse and the initial stage of vegetation recovery, which is essential knowledge for assessing future tundra landscape changes.
", "keywords": ["0301 basic medicine", "Ecology (including Biodiversity Conservation)", "Permafrost degradation", "Betula nana", "15. Life on land", "01 natural sciences", "Thermokarst", "Vegetation dynamics", "03 medical and health sciences", "13. Climate action", "Arctic tundra", "Environmental Sciences", "SDG 15 - Life on Land", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1007/s11104-017-3369-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-017-3369-8", "name": "item", "description": "10.1007/s11104-017-3369-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-017-3369-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-08-22T00:00:00Z"}}, {"id": "10.1007/s11104-017-3388-5", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:14:55Z", "type": "Journal Article", "created": "2017-08-26", "title": "Livestock grazing and aridity reduce the functional diversity of biocrusts", "description": "Livestock grazing and climate change are two of the most important global change drivers affecting ecosystem functioning in drylands. Grazing and climate are known to influence the cover and composition of biocrusts, which are substantial components of dryland soils globally. Much less is known, however, about how these global change drivers affect the functional diversity of biocrust communities in these ecosystems. Here, we evaluate the role of increasing aridity and grazing intensity in driving the functional diversity of biocrusts. We collected data on multiple biocrust functional traits and community composition, recent and historic grazing intensity, and vascular plants at 151 sites from drylands in eastern Australia. We then used structural equation modelling and a fourth corner analysis to examine the combined effects of aridity and grazing on biocrust functional diversity and individual functional traits. Aridity had a significant direct suppressive effect on biocrust functional diversity. Effects of grazing by livestock, kangaroos and rabbits on functional diversity were predominantly indirect and suppressive, mediated by a reduction in biocrust cover. Grazing did, however, promote functional diversity via an increase in vascular plant richness, with a concomitant increase in biocrust richness. The overall effect of grazing on biocrust functional diversity however was negative. Fourth corner analyses revealed that livestock grazing had a significant negative effect on the ability of biocrusts to stabilise the soil. Aridity had strong negative effects on biocrust height and their ability to absorb water and capture sediment. Few significant relationships were detected between enzyme-related traits and environmental variables. Our findings provide novel evidence that the combination of increasing aridity and intensified livestock grazing will reduce the functional diversity and capabilities of biocrust communities, with resultant declines in ecosystem functioning.", "keywords": ["2. Zero hunger", "0106 biological sciences", "13. Climate action", "XXXXXX - Unknown", "Trait; Biological soil crust; soil crusts; ecosystem function; functional diversity; livestock; Drylands", "11. Sustainability", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11104-017-3388-5.pdf"}, {"href": "https://doi.org/10.1007/s11104-017-3388-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-017-3388-5", "name": "item", "description": "10.1007/s11104-017-3388-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-017-3388-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-08-26T00:00:00Z"}}, {"id": "10.1007/s11104-021-04970-5", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:14:55Z", "type": "Journal Article", "created": "2021-04-30", "title": "Grazing impacts on ecosystem functions exceed those from mowing", "description": "Land use change due to the increasing anthropogenic activities is the most important driver leading to alteration of multiple ecosystem functions. Overgrazing is thought to be one of most pervasive and significant degrading processes in grasslands, but direct comparisons with other comparable drivers of land use intensification are lacking. Our results aimed to test how single land use practices (grazing, mowing), and combined land use practices (both grazing and mowing), influence biodiversity, soils and plant function, and the coupling of aboveground and belowground functions and properties in a Eurasian steppe grassland. We examined changes in individual functions associated with aboveground and belowground plant and soil compartments, and multiple combined functions (hereafter \u2018multifunctionality\u2019) at 317 sites along an extensive climatic gradient in Northern China. Further, we investigated the correlations (coupling) between aboveground and belowground processes under the three land use scenarios. We found a mixture of effects of grazing, mowing and mowing plus grazing. However, values of many aboveground and belowground attributes were lower when sites were grazed. Although grazed sites had lower values of soil carbon and nutrients, there were no grazing-induced changes in root carbon, nitrogen and phosphorus. More importantly, the most intense land use scenario (grazing combined with mowing) decoupled the correlations between belowground and aboveground functions compared with that of single land uses. Our study demonstrates that mowing is a better long-term management method than grazing for semi-natural grasslands in the Eurasian steppe are heavily grazed. Our results demonstrate that additional land use pressures imposed when mowing and grazing are applied together can decouple the positive associations between plant richness and functions. This knowledge is critical if we are to adopt strategies to maintain diverse grassland ecosystems and the important services and functions that they provide.", "keywords": ["2. Zero hunger", "0106 biological sciences", "Mowing", "04 agricultural and veterinary sciences", "Ecolog\u00eda", "15. Life on land", "01 natural sciences", "Ecosystem functions", "Grazing", "Plant diversity", "Eurasian grassland", "13. Climate action", "XXXXXX - Unknown", "Multifunctionality", "Ecosystem services", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://doi.org/10.1007/s11104-021-04970-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-021-04970-5", "name": "item", "description": "10.1007/s11104-021-04970-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-021-04970-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-04-30T00:00:00Z"}}, {"id": "10.1007/s11104-021-05261-9", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:14:55Z", "type": "Journal Article", "created": "2022-01-30", "title": "Tracing hotspots of soil erosion in high mountain environments: how forensic science based on plant eDNA can lead the way. An opinion", "description": "High mountain environments are among the most fragile on Earth. Due to anthropogenic disturbances and the exposure to extreme weather events, the rates of soil erosion have recently been accelerating, resulting in ecological degradation and geological hazards. Ecological restoration of mountains and an improved understanding of nature-based solutions to mitigate land degradation is therefore of utmost urgency. Identifying hotspots of soil erosion is a first step towards improving mitigation strategies. A promising methodology to identify erosion hotspots is sediment source fingerprinting, that differentiates the properties of soil from different sources, using signatures such as elemental geochemistry or radionuclides. However, in areas with complex lithologies or shallow and poorly developed soils, geochemical fingerprints allow only a rough distinction between erosion hotspots. In this opinion paper, we explore the relevance of environmental DNA (eDNA) that originates from plant litter and fixes onto fine soil particles, as a targeted sediment fingerprinting method sensitive to vegetation that could potentially allow the identification of erosion hotspots and their relative importance from sedimentary deposits. Pioneering studies indicate that eDNA allows not only the detection of specific vegetation communities, but also the identification of individual plant species. Supported by the increasing availability and quality of vegetation maps and eDNA reference libraries, we argue that sediment source fingerprinting using eDNA from plant litter, will evolve into a valuable method to identify hotspots of soil erosion and allow stakeholders to prioritize areas where ecological restoration is necessary in high mountain environments.", "keywords": ["Soil and water bioengineering", "Vegetation", "[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics", "550", "Sediment source fingerprinting", "Phylogenetics and taxonomy", "[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics", "15. Life on land", "Alpine", "01 natural sciences", "[SDV.BV.BOT] Life Sciences [q-bio]/Vegetal Biology/Botanics", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "Landslide", "Erosion", "13. Climate action", "[SDV.EE.ECO]Life Sciences [q-bio]/Ecology", "[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics", " Phylogenetics and taxonomy", "[SDV.EE.ECO] Life Sciences [q-bio]/Ecology", " environment/Ecosystems", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "environment/Ecosystems", "sedDNA", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1007/s11104-021-05261-9.pdf"}, {"href": "https://doi.org/10.1007/s11104-021-05261-9"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-021-05261-9", "name": "item", "description": "10.1007/s11104-021-05261-9", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-021-05261-9"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-30T00:00:00Z"}}, {"id": "10.1007/s11104-023-06151-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:14:56Z", "type": "Journal Article", "created": "2023-07-26", "title": "Smart soils track the formation of pH gradients across the rhizosphere", "description": "Abstract AimsOur understanding of the rhizosphere is limited by the lack of techniques for in situ live microscopy. Current techniques are either destructive or unsuitable for observing chemical changes within the pore space. To address this limitation, we have developed artificial substrates, termed smart soils, that enable the acquisition and 3D reconstruction of chemical sensors attached to soil particles.
MethodsThe transparency of smart soils was achieved using polymer particles with refractive index matching that of water. The surface of the particles was modified both to retain water and act as a local sensor to report on pore space pH via fluorescence emissions. Multispectral signals were acquired from the particles using a light sheet microscope, and machine learning algorithms predicted the changes and spatial distribution in pH at the surface of the smart soil particles.
ResultsThe technique was able to predict pH live and in situ within \uffc2\uffb1\uffe2\uff80\uff890.5 units of the true pH value. pH distribution could be reconstructed across a volume of several cubic centimetres around plant roots at 10\uffc2\uffa0\uffce\uffbcm resolution. Using smart soils of different composition, we revealed how root exudation and pore structure create variability in chemical properties.
ConclusionSmart soils captured the pH gradients forming around a growing plant root. Future developments of the technology could include the fine tuning of soil physicochemical properties, the addition of chemical sensors and improved data processing. Hence, this technology could play a critical role in advancing our understanding of complex rhizosphere processes.
", "keywords": ["/dk/atira/pure/subjectarea/asjc/1100/1111", "light sheet microscopy", "0301 basic medicine", "570", "0303 health sciences", "name=Soil Science", "/dk/atira/pure/subjectarea/asjc/1100/1110", "Sensing soil", "live imaging", "15. Life on land", "root", "530", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "03 medical and health sciences", "Root", "13. Climate action", "Rhizosphere", "Light sheet microscopy", "name=Plant Science", "rhizosphere", "[SDV.SA.SDS] Life Sciences [q-bio]/Agricultural sciences/Soil study", "Live imaging"]}, "links": [{"href": "https://doi.org/10.1007/s11104-023-06151-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-023-06151-y", "name": "item", "description": "10.1007/s11104-023-06151-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-023-06151-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-07-26T00:00:00Z"}}, {"id": "10.1007/s11130-020-00799-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:14:56Z", "type": "Journal Article", "created": "2020-02-03", "title": "Profile and Content of Residual Alkaloids in Ten Ecotypes of Lupinus mutabilis Sweet after Aqueous Debittering Process", "description": "AbstractThe evaluation of the level of alkaloids in edible Lupinus species is crucial from a food safety point of view. Debittering of lupin seeds has a long history; however, the control of the level of alkaloids after processing the seeds is typically only evaluated by changes in the bitter taste. The aim of this study was to evaluate the profile and residual levels of quinolizidine alkaloids (QA) in (Lupinus mutabilis Sweet) after aqueous debittering process. Samples from 10 ecotypes from different areas of Peru were analyzed before and after the process. Based on results obtained by gas chromatography and mass spectrometry, from eight alkaloids identified before the debittering process, only small amounts of lupanine (avg. 0.0012\uffc2\uffa0g/100\uffc2\uffa0g DM) and sparteine (avg. 0.0014\uffc2\uffa0g/100\uffc2\uffa0g DM) remained in the seeds after the debittering process, and no other alkaloids were identified. The aqueous debittering process reduced the content of alkaloids to levels far below the maximal level allowed by international regulations (\uffe2\uff89\uffa4 0.2\uffc2\uffa0g/kg DM).
", "keywords": ["0301 basic medicine", "Lupin Seeds", "Sparteine", "Organic chemistry", "Propiedades fisicoqu\u00edmicas", "Plant Science", "Gas Chromatography-Mass Spectrometry", "Evolution and Nutritional Properties of Lupin Seeds", "Agricultural and Biological Sciences", "Food science", "Per\u00fa", "03 medical and health sciences", "Deshidrataci\u00f3n acuosa", "Alkaloids", "Secado", "Tarwi", "https://purl.org/pe-repo/ocde/ford#2.11.01", "Granos", "Composici\u00f3n qu\u00edmica", "ta116", "Biology", "Ecotipos", "Ecology", " Evolution", " Behavior and Systematics", "Ecotype", "2. Zero hunger", "Original Paper", "0303 health sciences", "Rendimiento", "Procesamiento", "Evaluaci\u00f3n", "ta1183", "An\u00e1lisis organol\u00e9ptico", "ta1182", "Botany", "Life Sciences", "Diversity and Applications of Cyperus Species", "Lupinus", "Chocho", "Chemistry", "Contenido proteico", "Evolution and Ecology of Endophyte-Grass Symbiosis", "Taste", "Seeds", "Lupinus mutabilis"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11130-020-00799-y.pdf"}, {"href": "https://doi.org/10.1007/s11130-020-00799-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Foods%20for%20Human%20Nutrition", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11130-020-00799-y", "name": "item", "description": "10.1007/s11130-020-00799-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11130-020-00799-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-02-03T00:00:00Z"}}, {"id": "10.1007/s11274-004-5812-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:14:57Z", "type": "Journal Article", "created": "2004-11-18", "title": "Rhizosphere Bacterial Populations Of Metallophyte Plants In Heavy Metal-Contaminated Soils From Mining Areas In Semiarid Climate", "description": "Rhizosphere bacterial populations associated with four metallophyte plants in one of major polymetallic (Pb\u2013Zn\u2013Cu) semiarid Moroccan Hercynian province (Dra\u00e2 Sfar, Marrakech, Morocco) presenting long-term contamination mainly with Zn and Pb were analysed and compared to selected control soils. In the highly Zn-, Cu-, Pb- and Cd- contaminated soils, the total number of culturable heterotrophic bacteria were found in low proportions (< 2.6 \u00d7 102 \u2013 1.6 \u00d7 104 g\u22121soil). This bacterial content was slightly similar to that found in moderately polluted and controls soils (6.7 \u00d7 104 \u2013 5.8 \u00d7 106). However, the bacterial diversity and the rhizosphere/soil ratio, which compares the bacterial content (or bacterial charge) around the metallophyte plants with that in non-rhizosphere soil, were the bacteriological parameters mostly affected by heavy metal contamination. The chronic Zinc-stress results in an increase of tolerance to this metal of both the rhizosphere and non-rhizosphere bacterial communities. However, in general, the rhizosphere bacterial populations exhibited less tolerance to Zn toxicity than the bacterial population of non-rhizosphere soils. This result suggests that toxic effects of Zn decrease in the rhizosphere soils of the metallophyte plants.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "13. Climate action", "[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics", " Phylogenetics and taxonomy", "6. Clean water"], "contacts": [{"organization": "Bennisse, Rhizlane, Labat, Marc, Elasli, Abdelghani, Brhada, Fatiha, Chandad, Fatiha, Liegbott, Pierre-Pol, Hibti, Mohamed, Qatibi, Abdel-Illah,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s11274-004-5812-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/World%20Journal%20of%20Microbiology%20%26amp%3B%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11274-004-5812-2", "name": "item", "description": "10.1007/s11274-004-5812-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11274-004-5812-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-10-01T00:00:00Z"}}, {"id": "10.1016/j.jnc.2016.09.003", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:58Z", "type": "Journal Article", "created": "2016-09-15", "title": "Biodiversity And Ecological Long-Term Plots In Southern Patagonia To Support Sustainable Land Management: The Case Of Pebanpa Network", "description": "Historically, interactions and trends between biodiversity, ecosystem function (EF) and land use practices in southern Patagonia (Argentina) have been largely undocumented and poorly understood. Since 2002, 1214 permanent and semi-permanent plots within the PEBANPA Network have enabled researchers to monitor and assess functions and trends among vegetation parameters, biodiversity, forest dynamics, soil physicochemical characteristics, and land use management. The objectives of this manuscript are to communicate the role and rationale of the PEBANPA Network, summarize examples of the main results found within the network and provide guidance to decision makers with respect to advancing sustainable land management in southern Patagonia. As examples, rangeland health indices, seedling and sapling regeneration under different timber managed forests, litterfall and seeds production under silvopastoral use, and soil carbon content impacted by livestock grazing have all been assessed. Vegetation and environmental variables including soil respiration, soil water infiltration, soil water retention capacity, soil erosion, and litter cover were measured under different grazing intensities. Livestock and forestry production have caused changes in the original floristic patterns, with several areas experiencing desertification. Heavy stocking rates have caused the greatest impacts on grassland soil carbon (C) loss as a consequence of soil erosion. We were able to conclude that low \u2212 medium grazing intensities yield the most positive impacts for biodiversity and soil physicochemical characteristics. Studies regarding levels of seedling and sapling regeneration post-harvest of timber further supported the importance of long-term monitoring due to the strongest evidence of interactions occurring 20 to 30 years after harvest. Distribution patterns of vascular plants and epigaeic coleopterons diversity revealed statistically significant differences among geographical zones and dominant vegetation types. The PEBANPA Network helps southern Patagonia address the challenges of unsustainable land management and climate change through monitoring ecosystem function and services. Long-term monitoring of biodiversity and ecosystem function help decision makers better understand the impacts of land use practices, develop well-informed policies and secure present and future human well-being.", "keywords": ["2. Zero hunger", "0106 biological sciences", "LIVESTOCK GRAZING", "ECOSYSTEM SERVICES", "LAND USE PRACTICES", "15. Life on land", "01 natural sciences", "12. Responsible consumption", "CARBON SEQUESTRATION", "13. Climate action", "LONG-TERM MONITORING", "https://purl.org/becyt/ford/4.1", "BIODIVERSITY", "https://purl.org/becyt/ford/4", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.jnc.2016.09.003"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20for%20Nature%20Conservation", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jnc.2016.09.003", "name": "item", "description": "10.1016/j.jnc.2016.09.003", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jnc.2016.09.003"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-12-01T00:00:00Z"}}, {"id": "10.1007/s13280-017-0983-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:03Z", "type": "Journal Article", "created": "2017-11-24", "title": "Functional Land Management: Bridging the Think-Do-Gap using a multi-stakeholder science policy interface", "description": "Functional Land Management (FLM) is proposed as an integrator for sustainability policies and assesses the functional capacity of the soil and land to deliver primary productivity, water purification and regulation, carbon cycling and storage, habitat for biodiversity and recycling of nutrients. This paper presents the catchment challenge as a method to bridge the gap between science, stakeholders and policy for the effective management of soils to deliver these functions. Two challenges were completed by a wide range of stakeholders focused around a physical catchment model-(1) to design an optimised catchment based on soil function targets, (2) identify gaps to implementation of the proposed design. In challenge 1, a high level of consensus between different stakeholders emerged on soil and management measures to be implemented to achieve soil function targets. Key gaps including knowledge, a mix of market and voluntary incentives and mandatory measures were identified in challenge 2.", "keywords": ["Conservation of Natural Resources", "functional land management", "Soil functions", "01 natural sciences", "12. Responsible consumption", "Soil", "11. Sustainability", "Functional Land Management", "Policy framework", "Ecosystem", "0105 earth and related environmental sciences", "2. Zero hunger", "Think-Do-Gap", "Biodiversity", "04 agricultural and veterinary sciences", "soil functions", "Models", " Theoretical", "15. Life on land", "sustainability", "6. Clean water", "Sustainability", "13. Climate action", "think-do-gap", "Perspective", "0401 agriculture", " forestry", " and fisheries", "policy framework", "stakeholder workshops", "Stakeholder workshops"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s13280-017-0983-x.pdf"}, {"href": "https://doi.org/10.1007/s13280-017-0983-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ambio", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s13280-017-0983-x", "name": "item", "description": "10.1007/s13280-017-0983-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s13280-017-0983-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-11-24T00:00:00Z"}}, {"id": "10.1007/s13593-011-0079-0", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:03Z", "type": "Journal Article", "created": "2012-01-10", "title": "Fifteen Years Of No Till Increase Soil Organic Matter, Microbial Biomass And Arthropod Diversity In Cover Crop-Based Arable Cropping Systems", "description": "The physical, chemical and biological properties of soil may be modified by tillage, fertilization and cover crops. However there is little knowledge on long-term effects on soil properties, notably under Mediterranean climate. Moreover, biological indicators such as micro-arthropods can be used for a cost-effective analysis of soil biodiversity. Here, we studied physical and biological properties of a sandy loam soil in central Italy under a 4-year rotation of maize\u2013durum wheat\u2013cover crop\u2013sunflower\u2013durum wheat\u2013cover crop during 15\u00a0years. We analysed the effects of two tillage systems, conventional tillage (CT) and no-tillage (NT); two N fertilization rates, without N and medium N level; and three soil covers: cash crop residue as control, Brassica juncea and Vicia villosa. Results show that no tillage increased soil organic matter content in the upper 10-cm layer (3.31%) compared to the conventional tillage (2.19%). No tillage also improved structure stability and lowered bulk density in the same soil profile. No-tillage systems showed higher soil microbial biomass (+71%) and respiration (+44%), and a higher abundance and diversity of micro-arthropods. We conclude that no tillage is an effective measure to improve the physical and biological quality of soil in Mediterranean conditions. No-tillage positive effect can be enhanced by the right choice of N fertilization and cover crop cultivation. Bio-indicators such as micro-arthropods can be very predictive of soil habitability by organisms.", "keywords": ["2. Zero hunger", "[SDV.SA] Life Sciences [q-bio]/Agricultural sciences", "[SDV.EE] Life Sciences [q-bio]/Ecology", " environment", "13. Climate action", "Aggregate stability", " Micro-arthropod diversity", " Microbial biomass carbon", " Soil biological quality", " Soil organic matter", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water"]}, "links": [{"href": "https://www.iris.sssup.it/bitstream/11382/338182/2/Sapkota%20et%20al.%20%282012%29_ASDE.pdf"}, {"href": "https://doi.org/10.1007/s13593-011-0079-0"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy%20for%20Sustainable%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s13593-011-0079-0", "name": "item", "description": "10.1007/s13593-011-0079-0", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s13593-011-0079-0"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-01-11T00:00:00Z"}}, {"id": "10.1007/s13593-014-0215-8", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:03Z", "type": "Journal Article", "created": "2014-04-07", "title": "Fourteen Years Of Evidence For Positive Effects Of Conservation Agriculture And Organic Farming On Soil Life", "description": "Conventional agriculture strongly alters soil quality due to industrial practices that often have negative effects on soil life. Alternative systems such as conservation agriculture and organic farming could restore better conditions for soil organisms. Improving soil life should in turn improve soil quality and farming sustainability. Here, we have compared for the first time the long-term effects of conservation agriculture, organic farming, and conventional agriculture on major soil organisms such as microbes, nematofauna, and macrofauna. We have also analyzed functional groups. Soils were sampled at the 14-year-old experimental site of La Cage, near Versailles, France. The microbial community was analyzed using molecular biology techniques. Nematofauna and macrofauna were analyzed and classified into functional groups. Our results show that both conservation and organic systems increased the abundance and biomass of all soil organisms, except predaceous nematodes. For example, macrofauna increased from 100 to 2,500 %, nematodes from 100 to 700 %, and microorganisms from 30 to 70 %. Conservation agriculture showed a higher overall improvement than organic farming. Conservation agriculture increased the number of many organisms such as bacteria, fungi, anecic earthworms, and phytophagous and rhizophagous arthropods. Organic farming improved mainly the bacterial pathway of the soil food web and endogeic and anecic earthworms. Overall, our study shows that long-term, no-tillage, and cover crops are better for soil biota than periodic legume green manures, pesticides, and mineral fertilizers.", "keywords": ["570", "biodiversit\u00e9 du sol", "[SDV]Life Sciences [q-bio]", "630", "Soil quality", "n\u00e9matofaune", "microorganisme du sol", "agriculture biologique", "Soil food web", "Land management", "11. Sustainability", "Agricultural sustainability", "Soil biodiversity;Functional groups;Soil food web;Soil functionning;Soil quality;Land management;Agricultural sustainability;Agroecosystems;Agroecology", "Agroecosystems", "Soil functioning", "2. Zero hunger", "communaut\u00e9 microbienne", "Soil functionning", "agriculture conventionnelle", "04 agricultural and veterinary sciences", "Agro\u00e9cologie", "15. Life on land", "Soil biodiversity", "6. Clean water", "[SDV] Life Sciences [q-bio]", "13. Climate action", "Functional groups", "agriculture de conservation", "0401 agriculture", " forestry", " and fisheries", "Agroecology"]}, "links": [{"href": "https://doi.org/10.1007/s13593-014-0215-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy%20for%20Sustainable%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s13593-014-0215-8", "name": "item", "description": "10.1007/s13593-014-0215-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s13593-014-0215-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-04-08T00:00:00Z"}}, {"id": "10.1007/s13593-019-0587-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:03Z", "type": "Journal Article", "created": "2019-08-05", "title": "Diversified grain-based cropping systems provide long-term weed control while limiting herbicide use and yield losses", "description": "Integrated weed management encourages long-term planning and targeted use of cultural strategies coherently combined at the cropping system scale. The transition towards such systems is challenged by a belief of lower productivity and higher weed pressure. Here, we hypothesize that diversifying the crop sequence and its associated weed management tools allow long-term agronomic sustainability (low herbicide use, efficient weed control, and high productivity). Four 6-year rotations with different constraints (S2: transition from reduced tillage to no-till, chemical weeding; S3: chemical weeding; S4: typical integrated weed management system; S5: mechanical weeding) were compared to a reference (S1: 3-year rotation, systematic ploughing, chemical weeding) in terms of herbicide use, weed management, and productivity over the 2000\u20132017 period. Weed density was measured before and after weeding. Crop and weed biomass were sampled at crop flowering. Compared to S1, herbicide use was reduced by 46, 65, and 99% in S3, S4, and S5 respectively. Herbicide use in S2 was maintained at the same level as S1 (\u2212\u20099%), due to increased weed pressure and dependence to glyphosate for weed control during the fallow period of the no-till phase. Weed biomass was low across all cropping systems (0 to 5\u00a0g of dry matter m\u22122) but weed dynamics were stable over the 17\u00a0years in S1 and S4 only. Compared to S1, productivity at the cropping system scale was reduced by 22% in S2 and by 33% in S3. These differences were mainly attributed to a higher proportion of crops with low intrinsic productivity in S2 and S3. Through S4\u2019s multiperformance, we show for the first time that low herbicide use, long-term weed management, and high crop productivity can be reconciled in grain-based cropping systems provided that a diversified crop rotation integrating a diverse suite of tactics (herbicides included) is implemented.", "keywords": ["2. Zero hunger", "[SDV]Life Sciences [q-bio]", "Weed dynamics", "Sustainable agriculture", "Integrated weed management", "04 agricultural and veterinary sciences", "15. Life on land", "Cropping system . Integrated weed management .Weed dynamics . Crop productivity . Sustainable agriculture", "630", "[SDV] Life Sciences [q-bio]", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "Crop productivity", "0401 agriculture", " forestry", " and fisheries", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "Cropping system"]}, "links": [{"href": "https://doi.org/10.1007/s13593-019-0587-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy%20for%20Sustainable%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s13593-019-0587-x", "name": "item", "description": "10.1007/s13593-019-0587-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s13593-019-0587-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-08-01T00:00:00Z"}}, {"id": "10.1007/s12275-014-4129-6", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-08-25T16:15:02Z", "type": "Journal Article", "created": "2014-12-02", "title": "Effect Of Long-Term Different Fertilization On Bacterial Community Structures And Diversity In Citrus Orchard Soil Of Volcanic Ash", "description": "This study was conducted to assess bacterial species richness, diversity and community distribution according to different fertilization regimes for 16 years in citrus orchard soil of volcanic ash. Soil samples were collected and analyzed from Compost (cattle manure, 2,000 kg/10a), 1/2 NPK+compost (14-20-14+2,000 kg/10a), NPK+compost (28-40-28+2,000 kg/10a), NPK (28-40-28 kg/10a), 3 NPK (84-120-84 kg/10a), and Control (no fertilization) plot which have been managed in the same manners with compost and different amount of chemical fertilization. The range of pyrosequencing reads and OTUs were 4,687-7,330 and 1,790-3,695, respectively. Species richness estimates such as Ace, Chao1, and Shannon index were higher in 1/2 NPK+compost than other treatments, which were 15,202, 9,112, 7.7, respectively. Dominant bacterial groups at level of phylum were Proteobacteria, Acidobacteria, and Actinobacteria. Those were occupied at 70.9% in 1/2 NPK+compost. Dominant bacterial groups at level of genus were Pseudolabrys, Bradyrhizobium, and Acidobacteria. Those were distributed at 14.4% of a total of bacteria in Compost. Soil pH displayed significantly closely related to bacterial species richness estimates such as Ace, Chao1 (p<0.05) and Shannon index (p<0.01). However, it showed the negative correlation with exchangeable aluminum contents (p<0.05). In conclusion, diversity of bacterial community in citrus orchard soil was affected by fertilization management, soil pH changes and characteristics of volcanic ash.", "keywords": ["0301 basic medicine", "2. Zero hunger", "Citrus", "0303 health sciences", "Bacteria", "Agriculture", "Biodiversity", "Volcanic Eruptions", "15. Life on land", "Acidobacteria", "Actinobacteria", "Manure", "Soil", "03 medical and health sciences", "RNA", " Ribosomal", " 16S", "Proteobacteria", "Animals", "Cattle", "14. Life underwater", "Fertilizers", "Soil Microbiology", "Alphaproteobacteria"]}, "links": [{"href": "https://doi.org/10.1007/s12275-014-4129-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s12275-014-4129-6", "name": "item", "description": "10.1007/s12275-014-4129-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s12275-014-4129-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-11-29T00:00:00Z"}}, {"id": "10.1007/s12571-009-0030-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:02Z", "type": "Journal Article", "created": "2009-07-24", "title": "Assessing The Effect Of Faidherbia Albida Based Land Use Systems On Barley Yield At Field And Regional Scale In The Highlands Of Tigray, Northern Ethiopia", "description": "Implications of changes in traditional Faidherbia albida based land use systems on productivity were investigated in Tigray, northern Ethiopia. The relation between F. albida based-land use systems and crop productivity was explored in 77 fields and 81 farms at field and regional scales, respectively. Barley yield and soil fertility increased when field locations were closer to a F. albida trunk in the F. albida alone (AA) and F. albida + livestock (AL) land use systems. However, the F. albida + Eucalyptus camaldulensis (AE) land use system showed a decreasing trend in barley yield and soil fertility as distance from a F. albida trunk decreased. At regional scales, higher F. albida tree density per farm and sparsely cultivated land use types were associated with increased potential ecosystem services (barley yield). This study suggests that local biodiversity components (e.g. F. albida trees) can increase crop yield and soil fertility significantly when grown within and around farm lands. This study contributes to the knowledge on agricultural productivity enhancement by developing an approach to scaling up from farm to regional level.", "keywords": ["0106 biological sciences", "2. Zero hunger", "growth", "conservation", "tree-crop interactions", "04 agricultural and veterinary sciences", "15. Life on land", "agroforestry practices", "maize", "01 natural sciences", "acacia-albida", "eucalyptus-tereticornis", "opportunities", "0401 agriculture", " forestry", " and fisheries", "nitrogen mineralization", "biodiversity"], "contacts": [{"organization": "Hadgu, K.M., Kooistra, L., Rossing, W.A.H., van Bruggen, A.H.C.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s12571-009-0030-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Food%20Security", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s12571-009-0030-2", "name": "item", "description": "10.1007/s12571-009-0030-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s12571-009-0030-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-07-25T00:00:00Z"}}, {"id": "10.1016/b978-0-12-849873-6.00003-0", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:05Z", "type": "Report", "created": "2017-10-12", "title": "Changes in Soil Ecosystem Structure and Functions Due to Soil Contamination", "description": "Open Accesspublished", "keywords": ["2. Zero hunger", "Soil organic matter", "Services and goods", "13. Climate action", "Soil pollution", "15. Life on land", "Functional biodiversity", "Nutrient cycling", "6. Clean water"]}, "links": [{"href": "https://doi.org/10.1016/b978-0-12-849873-6.00003-0"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/b978-0-12-849873-6.00003-0", "name": "item", "description": "10.1016/b978-0-12-849873-6.00003-0", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/b978-0-12-849873-6.00003-0"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-01-01T00:00:00Z"}}, {"id": "10.1016/bs.aecr.2019.06.001", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:05Z", "type": "Report", "created": "2019-07-23", "title": "A multitrophic perspective on biodiversity\u2013ecosystem functioning research", "description": "Concern about the functional consequences of unprecedented loss in biodiversity has prompted biodiversity-ecosystem functioning (BEF) research to become one of the most active fields of ecological research in the past 25 years. Hundreds of experiments have manipulated biodiversity as an independent variable and found compelling support that the functioning of ecosystems increases with the diversity of their ecological communities. This research has also identified some of the mechanisms underlying BEF relationships, some context-dependencies of the strength of relationships, as well as implications for various ecosystem services that mankind depends upon. In this paper, we argue that a multitrophic perspective of biotic interactions in random and non-random biodiversity change scenarios is key to advance future BEF research and to address some of its most important remaining challenges. We discuss that the study and the quantification of multitrophic interactions in space and time facilitates scaling up from small-scale biodiversity manipulations and ecosystem function assessments to management-relevant spatial scales across ecosystem boundaries. We specifically consider multitrophic conceptual frameworks to understand and predict the context-dependency of BEF relationships. Moreover, we highlight the importance of the eco-evolutionary underpinnings of multitrophic BEF relationships. We outline that FAIR data (meeting the standards of findability, accessibility, interoperability, and reusability) and reproducible processing will be key to advance this field of research by making it more integrative. Finally, we show how these BEF insights may be implemented for ecosystem management, society, and policy. Given that human well-being critically depends on the multiple services provided by diverse, multitrophic communities, integrating the approaches of evolutionary ecology, community ecology, and ecosystem ecology in future BEF research will be key to refine conservation targets and develop sustainable management strategies.", "keywords": ["580", "Biodiversity change", "0301 basic medicine", "570", "0303 health sciences", "Geography & travel", "577", "Food web", "Spatial scaling", "910", "15. Life on land", "ddc:910", "Ecosystem functions", "Management", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "03 medical and health sciences", "Eco-evolution", "13. Climate action", "11. Sustainability", "Multifunctionality", "Landscape", "info:eu-repo/classification/ddc/910", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "Real-world biodiversity change"]}, "links": [{"href": "https://doi.org/10.1016/bs.aecr.2019.06.001"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/bs.aecr.2019.06.001", "name": "item", "description": "10.1016/bs.aecr.2019.06.001", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/bs.aecr.2019.06.001"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-01-01T00:00:00Z"}}, {"id": "10.1016/j.actao.2011.01.004", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:05Z", "type": "Journal Article", "created": "2011-02-07", "title": "Impact Of Acacia Tortilis Ssp. Raddiana Tree On Wheat And Barley Yield In The South Of Tunisia", "description": "no abstract", "keywords": ["2. Zero hunger", "0106 biological sciences", "ARID ZONE", "GEOMORPHOLOGY", "SOIL ENRICHMENT", "04 agricultural and veterinary sciences", "15. Life on land", "RENDEMENT C\u00c9R\u00c9ALIER", "01 natural sciences", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "YIELD", "G\u00c9OMORPHOLOGIE", "13. Climate action", "ACACIA TORTILIS RADDIANA", "0401 agriculture", " forestry", " and fisheries", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "RAINFALL", "INTERACTION", "TREE", "CEREALS"]}, "links": [{"href": "https://doi.org/10.1016/j.actao.2011.01.004"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Acta%20Oecologica", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.actao.2011.01.004", "name": "item", "description": "10.1016/j.actao.2011.01.004", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.actao.2011.01.004"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-03-01T00:00:00Z"}}, {"id": "10.1016/j.agee.2006.05.022", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:06Z", "type": "Journal Article", "created": "2006-07-08", "title": "Soil Organic Matter And Biological Soil Quality Indicators After 21 Years Of Organic And Conventional Farming", "description": "Organic farming systems often comprise crops and livestock, recycle farmyard manure for fertilization, and preventive or biocontrol measures are used for plant protection. We determined indicators for soil quality changes in the DOK long-term comparison trial that was initiated in 1978. This replicated field trial comprises organic and integrated (conventional) farming systems that are typical for Swiss agriculture. Livestock based bio-organic (BIOORG), bio-dynamic (BIODYN) and integrated farming systems (CONFYM) were compared at reduced and normal fertilization intensity (0.7 and 1.4 livestock units, LU) in a 7 year crop rotation. A stockless integrated system is fertilized with mineral fertilizers exclusively (CONMIN) and one control treatment remained unfertilized (NOFERT). The CONFYM system is amended with stacked manure, supplemental mineral fertilizers, as well as chemical pesticides. Manure of the BIOORG system is slightly rotted and in BIODYN it is composted aerobically with some herbal additives. In the third crop rotation period at normal fertiliser intensity soil organic carbon (Corg, w/w) in the plough layer (0\u201320 cm) of the BIODYN system remained constant and decreased by 7% in CONFYM and 9% in BIOORG as compared to the starting values. With no manure application Corg-loss was severest in NOFERT (22%), followed by CONMIN together with the systems at reduced fertiliser intensity (14\u201316%). Soil pH tended to increase in the organic systems, whereas the integrated systems had the lowest pH values. At the end of the third crop rotation period in 1998 biological soil quality indicators were determined. Compared to soil microbial biomass in the BIODYN systems the CONFYM soils showed 25% lower values and the systems without manure application were lower by 34%. Relative to the BIODYN soils at the same fertilization intensity dehydrogenase activity was 39\u201342% lower in CONFYM soils and even 62% lower in soils of CONMIN. Soil basal respiration did not differ between farming systems at the same intensity, but when related to microbial biomass (qCO2) it was 20% higher in CONFYM soils and 52% higher in CONMIN as compared to BIODYN, suggesting a higher maintenance requirement of microbial biomass in soils of the integrated systems. The manure based farming systems of the DOK trial are likely to favour an active and fertile soil. Both, Corg and biological soil quality indicators were clearly depending on the quantity and quality of the applied manure types, but soil microbial biomass and activities were much more affected than Corg.", "keywords": ["2. Zero hunger", "Biodiversity and ecosystem services", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Soil quality"]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2006.05.022"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2006.05.022", "name": "item", "description": "10.1016/j.agee.2006.05.022", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2006.05.022"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-01-01T00:00:00Z"}}, {"id": "10.1016/j.agee.2010.01.017", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:08Z", "type": "Journal Article", "created": "2010-02-26", "title": "Resilience Of Acid Subalpine Grassland To Short-Term Liming And Fertilisation", "description": "Une exp\u00e9rience de fertilisation a d\u00e9but\u00e9 en 1989 dans les Alpes fran\u00e7aises, sur une prairie acidophile situ\u00e9e \u00e0 2000 m d'altitude, o\u00f9 de la chaux (\u00ab chaulage \u00bb) et des scories enrichies par chlorure de potassium (\u00ab fertilisation \u00bb) ont \u00e9t\u00e9 apport\u00e9s jusqu'en 1992. Depuis, aucun autre amendement n'a \u00e9t\u00e9 appliqu\u00e9. En 2007 nous avons revisit\u00e9 l'exp\u00e9rience et avons observ\u00e9 que le pH du sol \u00e9tait toujours sensiblement plus haut sur les placettes chaul\u00e9es, alors que les concentrations du sol en azote (N) \u00e9taient inf\u00e9rieures dans ces m\u00eames placettes. Sur les placettes fertilis\u00e9es, le carbone du sol (C) et les concentrations en N \u00e9taient inf\u00e9rieurs compar\u00e9s aux placettes non-fertilis\u00e9es. Cependant, la qualit\u00e9 de la liti\u00e8re (concentrations en C et N, donn\u00e9es SPIRS) \u00e9tait semblable pour les deux traitements. La composition floristique, mais pas la richesse sp\u00e9cifique, s'est r\u00e9v\u00e9l\u00e9e \u00eatre diff\u00e9rente entre les placettes chaul\u00e9es et non-chaul\u00e9es, et les placettes fertilis\u00e9es et non-fertilis\u00e9es. Ces changements sont probablement dus \u00e0 la diminution de la proportion de gramin\u00e9es acidophiles autrefois dominantes et \u00e0 une augmentation des plantes g\u00e9n\u00e9ralistes et meilleures fourrag\u00e8res. Cependant, ces changements n'ont pas influenc\u00e9 la productivit\u00e9. Les concentrations en N et C et les donn\u00e9es de SPIRS ont indiqu\u00e9 une modification de la composition chimique de la v\u00e9g\u00e9tation en r\u00e9ponse aux traitements. Nous concluons que trois ann\u00e9es de fertilisation et chaulage ont influenc\u00e9 la composition floristique et men\u00e9 \u00e0 une banalisation de la v\u00e9g\u00e9tation encore visible 15 ann\u00e9es plus tard. Ces changements sont probablement durables \u00e9tant donn\u00e9 les modifications du fonctionnement du sol qu'ils ont engendr\u00e9es.", "keywords": ["[SDE] Environmental Sciences", "2. Zero hunger", "0106 biological sciences", "ECOSYSTEME", "PH", "PHOSPHORE", "ALPES FRANCAISES", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "RESILIENCE ECOLOGIQUE", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "FERTILISATION", "0401 agriculture", " forestry", " and fisheries", "EXPERIMENTATION", "RELATION SOL PLANTE"]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2010.01.017"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2010.01.017", "name": "item", "description": "10.1016/j.agee.2010.01.017", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2010.01.017"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-04-15T00:00:00Z"}}, {"id": "10.1016/j.agee.2014.07.010", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-08-25T16:15:10Z", "type": "Journal Article", "created": "2014-07-28", "title": "Benefits Of Winter Cover Crops And No-Tillage For Microbial Parameters In A Brazilian Oxisol: A Long-Term Study", "description": "Soil degradation in Brazil is a concern due to intensive agricultural production. Combining conservation practice, such as no-tillage, with winter cover crops may increase microbial activity and enhance soil quality more than either practice alone. This research evaluated the benefits of long-term (23 years) winter cover crops and reduced tillage on soil microbial quality indicators in an Oxisol from Parana State, Southern Brazil. The winter cover treatments were: fallow, black oat, wheat, radish, blue lupin, and hairy vetch in conventional (plow) or no-tillage management; the summer crop was a soybean/maize rotation. Soil quality parameters included organic C, microbial biomass C and N, total and labile polysaccharide, easily extractable and total glomalin-related soil protein, and enzyme activity. Winter crops increased soil microbial quality parameters compared to fallow in both tillage systems, with greater relative increase in conventional than no-tillage. No-tillage had higher microbial biomass, polysaccharide, glomalin-related soil protein, and soil enzyme activity than conventional tillage. Including legumes in the crop rotation was important for N balance in the soil\u2013plant system, increasing soil organic C content, and enhancing soil quality parameters to a greater extent than grasses or radish. The microbial parameters proved to be more sensitive indicators of soil change than soil organic C. Cultivating winter cover crop with either tillage is a beneficial practice enhancing soil microbial quality and also soil organic C stocks.", "keywords": ["2. Zero hunger", "Soil biology", "13. Climate action", "Biodiversity and ecosystem services", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water", "12. Responsible consumption"], "contacts": [{"organization": "Elcio L. Balota, Ademir Calegari, Andre S. Nakatani, Mark S. Coyne,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2014.07.010"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2014.07.010", "name": "item", "description": "10.1016/j.agee.2014.07.010", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2014.07.010"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-12-01T00:00:00Z"}}, {"id": "10.1016/j.agee.2021.107351", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:12Z", "type": "Journal Article", "created": "2021-02-23", "title": "Weed community diversity in conservation agriculture: Post-adoption changes", "description": "Abstract Conservation agriculture has been identified as one of the farming systems likely to deliver sustainable agriculture but its effects over time on the diversity and composition of weed communities are poorly documented. Using a network of 100 winter wheat fields selected to encompass a gradient of years in conservation agriculture from 1 to 20 years in the Bourgogne-Franche-Comte region (France), we analyzed the changes that occurred in the diversity of weed communities over several years, both in \u03b1- and \u03b2-diversity using a taxonomic (species level) and functional (10 response traits) approach. Based on three weed surveys (before the last herbicide use, before harvest, before sowing the following crop), we identified weeds able to maintain and/or to produce propagules. All the observed weed communities were rich (average species richness of 23.9 species), diverse (average Shannon diversity of 2.15) and equitably composed of low-density species. The results showed an increase in species richness, total weed abundance and \u03b1-functional diversity but no change in species diversity and species evenness over time. Heterogeneity and average values of \u03b2-taxonomic and \u03b2-functional diversity between communities were high in the early years following the adoption of conservation agriculture. Heterogeneity and average \u03b2-taxonomic and \u03b2-functional diversity decreased over time, leading to a homogenization of weed community assemblages. Despite major changes in cultural practices related to conservation agriculture, homogenization of weed community was not immediate and did not concern all the traits studied.", "keywords": ["[SDE] Environmental Sciences", "0106 biological sciences", "2. Zero hunger", "functional convergence", "no-tillage", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "630", "\u03b2-diversity", "[SDE]Environmental Sciences", "\u03b1-diversity", "0401 agriculture", " forestry", " and fisheries", "weed survey"], "contacts": [{"organization": "Derrouch, Damien, Dessaint, Fabrice, Fried, Guillaume, Chauvel, Bruno,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2021.107351"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2021.107351", "name": "item", "description": "10.1016/j.agee.2021.107351", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2021.107351"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-06-01T00:00:00Z"}}, {"id": "10.1016/j.agrformet.2020.108031", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:14Z", "type": "Journal Article", "created": "2020-05-29", "title": "Inter-individual variability in spring phenology of temperate deciduous trees depends on species, tree size and previous year autumn phenology", "description": "We explored the inter-individual variability in bud-burst and its potential drivers, in homogeneous mature stands of temperate deciduous trees. Phenological observations of leaves and wood formation were performed weekly from summer 2017 to summer 2018 for pedunculate oak, European beech and silver birch in Belgium. The variability of bud-burst was correlated to previous' year autumn phenology (i.e. the onset of leaf senescence and the cessation of wood formation) and tree size but with important differences among species. In fact, variability of bud-burst was primarily related to onset of leaf senescence, cessation of wood formation and tree height for oak, beech and birch, respectively. The inter-individual variability of onset of leaf senescence was not related to the tree characteristics considered and was much larger than the inter-individual variability in bud-burst. Multi-species multivariate models could explain up to 66% of the bud-burst variability. These findings represent an important advance in our fundamental understanding and modelling of phenology and tree functioning of deciduous tree species.", "keywords": ["Agriculture and Food Sciences", "0106 biological sciences", "Atmospheric Science", "polno olistanje", "Broadleaved forest", "Silver birch", "Edellauvskog", "coloration", "01 natural sciences", "fenologija", "navadna bukev", "Pedunculate oak", "FAGUS-SYLVATICA", "PHLOEM", "Global and Planetary Change", "LEAF PHENOLOGY", "CLIMATE-CHANGE", "VDP::\u00d8kologi: 488", "Physics", "Forestry", "VDP::Ecology: 488", "04 agricultural and veterinary sciences", "dob", "navadna breza", "Chemistry", "Phenology", "info:eu-repo/classification/udc/630*811", "rumenenje listov", "XYLEM", "MODELS", "Article", "leaf unfolding", "Fenologi", "Coloration", "nastanek lesa", "Biology", "Wood formation", "kambij", "Leaf unfolding", "RADIAL GROWTH", "15. Life on land", "listavci", "European beech", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "SENESCENCE", "13. Climate action", "wood formation", "0401 agriculture", " forestry", " and fisheries", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "Agronomy and Crop Science"]}, "links": [{"href": "https://doi.org/10.1016/j.agrformet.2020.108031"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agricultural%20and%20Forest%20Meteorology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agrformet.2020.108031", "name": "item", "description": "10.1016/j.agrformet.2020.108031", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agrformet.2020.108031"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-08-01T00:00:00Z"}}, {"id": "10.1016/j.apsoil.2005.03.003", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:17Z", "type": "Journal Article", "created": "2005-04-20", "title": "Effects Of Organic Versus Conventional Management On Chemical And Biological Parameters In Agricultural Soils", "description": "Abstract A comparative study of organic and conventional arable farming systems was conducted in The Netherlands to determine the effect of management practices on chemical and biological soil properties and soil health. Soils from thirteen accredited organic farms and conventionally managed neighboring farms were analyzed using a polyphasic approach combining traditional soil analysis, culture-dependent and independent microbiological analyses, a nematode community analysis and an enquiry about different management practices among the farmers. Organic management, known primarily for the abstinence of artificial fertilizers and pesticides, resulted in significantly lower levels of both nitrate and total soluble nitrogen in the soil, higher numbers of bacteria of different trophic groups, as well as larger species richness in both bacteria and nematode communities and more resilience to a drying\u2013rewetting disturbance in the soil. The organic farmers plough their fields less deeply and tend to apply more organic carbon to their fields, but this did not result in a significantly higher organic carbon content in their soils. The levels of ammonium, organic nitrogen, phosphate and total phosphorus did not differ, significantly between the soils under different management. Fifty percent of the conventional Dutch farmers also used organic fertilizers and the numbers of farmers using a green crop fertilizer did not differ between the two management types. Soil type \u2013 clayey or sandy soil \u2013 in general had a much stronger effect on the soil characteristics than management type. The soil type influenced pH, nitrate, ammonium, phosphate and organic carbon levels as well as numbers of oligotrophic bacteria and of different groups of nematodes, and different diversity indices. With the collected data set certain soil characteristics could also be attributed to the use of different management practices like plow depth, crop or cover crop type or to the management history of the soil.", "keywords": ["0106 biological sciences", "2. Zero hunger", "agroecosystems", "microbial-populations", "species composition", "plant", "04 agricultural and veterinary sciences", "15. Life on land", "maturity index", "01 natural sciences", "6. Clean water", "diversity", "communities", "gradient gel-electrophoresis", "low-input", "0401 agriculture", " forestry", " and fisheries", "farming systems"], "contacts": [{"organization": "van Diepeningen, A.D., de Vos, O.J., Korthals, G.W., van Bruggen, A.H.C.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2005.03.003"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2005.03.003", "name": "item", "description": "10.1016/j.apsoil.2005.03.003", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2005.03.003"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-01-01T00:00:00Z"}}, {"id": "10.1016/j.apsoil.2007.03.006", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:17Z", "type": "Journal Article", "created": "2007-04-24", "title": "Influence Of Tillage, Residue Management, And Crop Rotation On Soil Microbial Biomass And Catabolic Diversity", "description": "The densely populated, intensively cropped subtropical highlands of the world have agricultural sustainability problems from soil erosion and fertility decline. In 1991, the International Maize and Wheat Improvement Center (CIMMYT) initiated a long-term field experiment at its semi-arid highland experiment station in Mexico (2240 masl; 19.318N, 98.508W; Cumulic Phaeozem) to investigate the long-term effects of tillage/seeding practices, crop rotations, and crop residue management on maize and wheat grown under rainfed conditions. Soil ecology status contributes to agricultural system sustainability, and evaluations were made to determine the effect of different management practices on soil microbial biomass (SMB) (substrate-induced respiration (SIR) and chloroform fumigation incubation (CFI)) and micro-flora physiological and catabolic diversity (BIOLOG TM ecoplate well system). SMB-C (CFI, SIR) was significantly and respectively 1.2 and 1.3 times higher for residue retention (average 387 mg C kg 1 dry soil and 515 mg C kg 1 dry soil, respectively) compared to residue removal. SMB-C (CFI) was significantly higher for wheat (369 mg C kg 1 dry soil) compared to maize (319 mg C kg 1 dry soil). SMB-N (CFI) was significantly 1.3 times higher for residue retention (average 28 mg N kg 1 dry soil) compared to residue removal. The average well color development (AWCD) obtained by the BIOLOG TM ecoplate essay indicated there were large differences in the catabolic capability of soil microbial communities after 15 years of contrasting management practices. While maize and wheat rotation under conventional tillage with residue retention showed a significantly higher overall AWCD value compared to the other treatments, AWCD of maize with zero tillage and residue removal was significantly lower than in the other treatments. AWCD was significantly higher for residue retention compared to residue removal and for wheat as compared to maize. For maize, the management practices were divided into two groups; zero tillage with residue removal was separate from all other treatments. For wheat, conventional tillage was separate from all zero tillage treatments. This study suggests that in the target area, a cropping system that includes zero tillage, crop rotation, and crop residue retention can increase overall biomass and micro-flora activity and diversity compared with common farming practices. In the long term, zero tillage combined with residue retention creates conditions", "keywords": ["2. Zero hunger", "Conservation agriculture", "Small-scale farming", "Residue management", "Microbial biomass", "04 agricultural and veterinary sciences", "15. Life on land", "Crop rotations", "Catabolic diversity", "6. Clean water", "Tillage", "Central Mexico", "0401 agriculture", " forestry", " and fisheries", "Field Scale", "Rainfed agriculture", "Conservation tillage"]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2007.03.006"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2007.03.006", "name": "item", "description": "10.1016/j.apsoil.2007.03.006", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2007.03.006"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-10-01T00:00:00Z"}}, {"id": "10.1016/j.apsoil.2020.103596", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-08-25T16:15:20Z", "type": "Journal Article", "created": "2020-06-02", "title": "Soil management intensity shifts microbial catabolic profiles across a range of European long-term field experiments", "description": "Assessing soil microbial functionality has the potential to reveal meaningful effects of soil management on soil processes influencing soil quality. We used MicroResp\u2122 to assess microbial respiration upon the addition of six carbon substrates (glucose, alanine, aminobutyric acid, N-acetyl glucosamine, alpha-ketoglutaric acid, and lignin). From this, we calculated the multiple substrate induced respiration (MSIR), the microbial catabolic profile expressed as absolute and relative utilization rate, and the Shannon microbial functional diversity index (H\u2032). We tested the effect of tillage (reduced vs. conventional) and organic matter addition (high vs. low) on these microbial parameters in soil from 10 European long-term field experiments (LTEs), and investigated their relationships with labile organic carbon fractions and various soil parameters linked to soil functions. Reduced tillage and high organic matter input increased MSIR compared to conventional tillage and low organic matter input. In addition, reduced tillage resulted in a small but significant increase in functional diversity compared to conventional tillage. An increase in soil management intensity (CT-Low > CT-High > RT-Low > RT-High) was associated with lower utilization of all the substrates expressed as absolute utilization rate, and a proportionately higher utilization of alpha-ketoglutaric acid compared to the other substrates. More intensive management systems also showed lower soil quality as measured by various soil parameters, in particular total and labile organic carbon, basal respiration, and microbial biomass nitrogen. The present work shows for the first time the key role of labile organic carbon, as affected by soil management, in determining microbial functional diversity. Aggregating results from 10 European arable LTEs, making use of a comprehensive dataset, MicroResp\u2122 showed that reduced tillage and increased organic matter addition created a more favourable habitat for the microbial community to utilize different carbon substrates and, thereby, the potential for nutrient cycling.", "keywords": ["2. Zero hunger", "04 agricultural and veterinary sciences", "MicroResp\u2122", "Microbial functional diversity", "15. Life on land", "01 natural sciences", "Community level physiological profiling", "6. Clean water", "Tillage", "Structural equation modelling", "13. Climate action", "Organic matter addition", "0401 agriculture", " forestry", " and fisheries", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2020.103596"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2020.103596", "name": "item", "description": "10.1016/j.apsoil.2020.103596", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2020.103596"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-01T00:00:00Z"}}, {"id": "10.1016/j.apsoil.2024.105585", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:20Z", "type": "Journal Article", "created": "2024-08-15", "title": "Managing both overstory and understory vegetation mitigates the impact of drought on soil nematode communities in a Mediterranean pine forest", "description": "Forest management strategies can effectively mitigate the impacts of drought on tree species, but their effects on soil fauna remain largely unexplored. Among soil organisms, soil nematodes can serve as valuable bioindicators to assess the impact of forest management on soil biodiversity and soil functioning. Consequently, we investigated two related questions in a Mediterranean Pinus halepensis Mill. forest located in southeastern France. First, how do soil nematodes respond to forest management practices? Second, can forest management practices help modulate the effects of Mediterranean summer drought on these soil organisms? We conducted a field experiment in which we explored the influence of two forest management techniques-tree thinning (intense, moderate, or absent) and understory removal (shrubs present or absent)-on soil nematodes before and after the summer drought. We found that only total and bacterivorous nematode abundances were positively influenced by the forest management practices. The highest values were observed under conditions of intense thinning combined with shrub presence, with an average of 97,509 individuals per kg of dry soil. In contrast, the abundances of all nematodes, with the exception of predaceous nematodes, were lower after the summer drought with a reduction ranging from-55 % to-82 %. Total, bacterivorous, and fungivorous nematode abundances were less negatively affected by the summer drought under conditions of moderate thinning when shrubs were present versus absent. More generally, we discovered that bacterivorous and fungivorous nematodes were particularly sensitive to the forest management practices and the summer drought. It is thus apparent that habitat alterations induced by forest management can strongly affect nematode community structure and could therefore prompt shifts in ecosystem functioning. Finally, this study highlights that, in forests, understory vegetation can have significant positive impacts on soil nematode populations when severe dry periods occur.", "keywords": ["2. Zero hunger", "570", "Forest management", "Drought", "Soil nematodes", "15. Life on land", "630", "6. Clean water", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "13. Climate action", "Soil health", "Pinus halepensis", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "Thinning"]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2024.105585"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2024.105585", "name": "item", "description": "10.1016/j.apsoil.2024.105585", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2024.105585"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-10-01T00:00:00Z"}}, {"id": "10.1016/j.apsoil.2025.106329", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:20Z", "type": "Journal Article", "created": "2025-07-22", "title": "Reliability of earthworm data from citizen science: Lessons from 7\u00a0years of a French national monitoring protocol", "description": "Monitoring biodiversity is seldom comprehensive, as the spatio-temporal resolution needed to accurately reflect dynamic changes of these communities in diverse environments is often lacking. Citizen science offers a promising tool to help fill these gaps, engaging a wider audience in monitoring efforts and thus enhancing our understanding of earthworm ecology. However, a significant challenge arises as earthworms are difficult to identify to the species level in the field by non-experts, necessitating the use of morphotypes as taxonomic proxies. This study evaluates the reliability of earthworm classification into four earthworm morphotypes within the \u2018500 ENI\u2019 (Non-intended Effects) Monitoring Network in France. The network relies on annual sampling conducted in agricultural lands by non-specialist participants with subsequent identification verification by earthworm taxonomists. Analyzing >48,000 individual earthworms collected over 950 plots, we calculated two indices: the misclassification rate (MR) and the undetected rate (UR) to assess the reliability of classification into earthworm morphotypes. The results indicated an average MR of 28 % and an average UR of 32 %, which both varied according to morphotypes. Endogeics had lower error rates compared to epigeics, anecics with a red anterior, and anecics with a black anterior. Our findings underscored the significant impact of sampler experience and earthworm community composition on the reliability of classification of individuals into morphotypes by citizens. The results highlight the critical need for enhanced support and guidance for participants with limited experience. Furthermore, we recommend providing additional training or resources to aid in morphotype classification, especially for earthworm communities exhibiting low abundance, low adult proportion, or low morphotype diversity. Encouraging participants to sample during periods favorable for detecting reliable total and adult abundances would also help optimize morphotype detection.
", "keywords": ["[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "Monitoring", "Participants' experience", "Participatory science", "Data quality", "Earthworm morphological group Data quality Monitoring Participants' experience Participatory science Training", "Earthworm morphological group", "Training"], "contacts": [{"organization": "Hoeffner, Kevin, Bergerot, Benjamin, Butt, Kevin, G\u00e9rard, Sylvain, Pelosi, C\u00e9line, P\u00e9r\u00e8s, Gu\u00e9nola, Briones, Maria J.I., Deca\u00ebns, Thibaud, Delaveau, Natacha, Guillocheau, Sarah, Hedde, Micka\u00ebl, Hotte, Ho\u00ebl, Le Bayon, Ren\u00e9e-Claire, Muys, Bart, Phillips, Helen R.P., Poupelin, Maxime, Cluzeau, Daniel,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2025.106329"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2025.106329", "name": "item", "description": "10.1016/j.apsoil.2025.106329", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2025.106329"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-10-01T00:00:00Z"}}, {"id": "10.1016/j.baae.2020.07.003", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-08-25T16:15:22Z", "type": "Journal Article", "created": "2020-07-24", "title": "Grazing and aridity have contrasting effects on the functional and taxonomic diversity of ants", "description": "Open AccessM.D-B. was supported by the European Union\u2019s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No 702057 (CLIMIFUN) and by a Large Research Grant from the British Ecological Society (Grant Agreement No. LRA17 1193, MUSGONET).", "keywords": ["Richness", "0106 biological sciences", "2. Zero hunger", "Grazing", "Ants", "XXXXXX - Unknown", "Drylands", "Functional diversity", "Ecolog\u00eda", "15. Life on land", "01 natural sciences", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.baae.2020.07.003"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Basic%20and%20Applied%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.baae.2020.07.003", "name": "item", "description": "10.1016/j.baae.2020.07.003", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.baae.2020.07.003"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-01T00:00:00Z"}}, {"id": "10.1016/j.baae.2021.10.001", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:22Z", "type": "Journal Article", "created": "2021-10-12", "title": "Taxonomic and functional characteristics of field edge weed communities under contrasting crop management strategies", "description": "Abstract The widespread loss of weed diversity and associated ecosystem functions is raising important concerns. Field edges could play a major role in the maintenance of weed functional diversity in arable landscapes as these habitats still harbour high weed diversity, owing to either a reduced farming management intensity and/or to a spillover of species from adjacent perennial field margins. Here, we investigated the taxonomic and functional characteristics of weed species recorded in surveys of field edges and their associated field cores over six consecutive years in 60 arable fields farmed with five crop management strategies. We found that field edges were richer, with species more functionally diverse and composition more stable over years than field core surveys. The distribution of individual functional traits differed between field edges and field cores, with higher values for seed mass and nitrophily (Ellenberg.N), and a wider distribution of specific leaf area values in field edges. The bimodal distribution of plant height and germination period observed in field edges became unimodal in field cores. Field edges harboured species with ecological strategies associated with field cores (ruderal species) plus a conservative strategy which could be explained by a spillover from the adjacent perennial field margins. Crop management strategies impacted field edge flora, though to a lesser extent than the field core flora whereas the functional differences between the field edge and the field core flora were less marked when crop management intensity was lower. These results indicate that field edges harbour a unique assemblage of species and highly contribute to the maintenance of weed diversity in arable landscapes. Future studies should thus focus on the importance of these specific functional traits to the agroecosystem functioning.", "keywords": ["agroecology", "disturbance", "[SDE] Environmental Sciences", "2. Zero hunger", "0106 biological sciences", "04 agricultural and veterinary sciences", "functional ecology", "15. Life on land", "01 natural sciences", "630", "plant traits", "field margin", "[SDE]Environmental Sciences", "ecological strategy", "species spillover", "0401 agriculture", " forestry", " and fisheries", "biodiversity conservation"]}, "links": [{"href": "https://doi.org/10.1016/j.baae.2021.10.001"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Basic%20and%20Applied%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.baae.2021.10.001", "name": "item", "description": "10.1016/j.baae.2021.10.001", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.baae.2021.10.001"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-12-01T00:00:00Z"}}, {"id": "10.1016/j.biocon.2011.11.024", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:22Z", "type": "Journal Article", "created": "2011-12-19", "title": "Alpha- And Beta-Diversity In Moth Communities In Salt Marshes Is Driven By Grazing Management", "description": "This study evaluates the effects of long-term sheep grazing in salt marshes on the diversity of moths and derives conclusive management suggestions for the conservation of invertebrate diversity in salt marshes. Study sites were located on the Hamburger Hallig, on the Western coast of Schleswig-Holstein, Germany. Between 2006 and 2009, salt marshes that have been under four levels of livestock density (0, 1-2 sheep/ha, 3-4 sheep/ha, 10 sheep/ha) for over 20 years were sampled using light traps and photoeclectors. Plant and moth species richness were highest under low stocking densities, moth species richness, however, showed no difference between low stocking densities and abandonment. Species richness of moths was only weakly correlated with vegetation parameters (species richness, vegetation height, cover and litter). Using additive diversity partitioning we show that no single grazing treatment harbored all recorded moth species and that grazing increases habitat heterogeneity within each treatment. Additionally, we show that moths react more sensitively to grazing than plants, and that therefore assessments of plant species richness in salt marshes do not allow conclusions on invertebrate diversity. For the evaluation of salt-marsh diversity, a multi-species approach should be favored combining plant and invertebrate assessments. A mosaic of abandoned sites and sites with low and intermediate stocking densities would benefit moth diversity in salt-marsh conservation. (C) 2011 Elsevier Ltd. All rights reserved.
", "keywords": ["Additive diversity partitioning", "PLANT DIVERSITY", "0106 biological sciences", "LONG-TERM", "Small scale", "CONSERVATION", "SPECIES-DIVERSITY", "WESTERN FRANCE", "HABITAT HETEROGENEITY", "/dk/atira/pure/core/keywords/biology; name=Ecosystems Research", "Microlepidoptera", "15. Life on land", "01 natural sciences", "Vegetation structure", "Plant diversity", "FARMLAND BIODIVERSITY", "GEE", "GAMMA-DIVERSITY", "SPATIAL VARIATION", "14. Life underwater", "GRASSLANDS"]}, "links": [{"href": "https://doi.org/10.1016/j.biocon.2011.11.024"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biological%20Conservation", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biocon.2011.11.024", "name": "item", "description": "10.1016/j.biocon.2011.11.024", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biocon.2011.11.024"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-02-01T00:00:00Z"}}, {"id": "10.1016/j.biocon.2022.109475", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:22Z", "type": "Journal Article", "created": "2022-03-15", "title": "In defence of soil biodiversity: Towards an inclusive protection in the European Union", "description": "Open AccessSince soil biodiversity sustains above-ground life, the European Union (EU) has recently announced its new Soil Strategy to better protect soil ecosystems as part of the Biodiversity Strategy for 2030. Also, the EU\u2019s Farm to Fork Strategy and the Zero Pollution Action Plan aim for soil protection. However, the status of soil biodiversity protection has not been comprehensively assessed. Therefore, we explored regulatory, incentive-based and knowledge-based instruments and strategic policy documents at the EU and national levels to determine whether they adequately protect soil biodiversity. Our review of 507 literature references concluded that only eight EU member states explicitly address threats to soil biodiversity in 14 regulatory instruments while 13 countries mainly focus on implicit threats to soil biodiversity, whereas six countries do not consider soil biodiversity. At the EU level, current directives and regulations only tackle individual threats to soil biodiversity. An EU-wide, legally binding protection could ensure a standardised minimum level of soil biodiversity protection while preventing surging costs of not acting. The EU Soil Health Law foreseen for 2023 could couple land management practices beneficial for soil biodiversity with incentive-based instruments. Simultaneously, models should be designed to predict soil biodiversity, considering soil biodiversity\u2019s spatial and temporal heterogeneity.", "keywords": ["2. Zero hunger", "2511.06 Conservaci\u00f3n de Suelos", "13. Climate action", "Common Agricultural Policy", " Green Deal", " Soil biodiversity conservation", " Soil governance", " Soil protection", "11. Sustainability", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "0105 earth and related environmental sciences", "12. Responsible consumption"], "contacts": [{"organization": "K\u00f6ninger, J., Panagos, P., Jones, A., Briones, M.J.I., Orgiazzi, A.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.biocon.2022.109475"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biological%20Conservation", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biocon.2022.109475", "name": "item", "description": "10.1016/j.biocon.2022.109475", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biocon.2022.109475"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-01T00:00:00Z"}}, {"id": "10.1016/j.cub.2020.09.063", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:29Z", "type": "Journal Article", "created": "2020-10-15", "title": "Newly explored\u00a0Faecalibacterium\u00a0diversity is connected to age, lifestyle, geography, and disease.", "description": "Faecalibacterium is prevalent in the human gut and a promising microbe for the development of next-generation probiotics (NGPs) or biotherapeutics. Analyzing reference Faecalibacterium genomes and almost 3,000 Faecalibacterium-like metagenome-assembled genomes (MAGs) reconstructed from 7,907 human and 203 non-human primate gut metagenomes, we identified the presence of 22 different Faecalibacterium-like species-level genome bins (SGBs), some further divided in different strains according to the subject geographical origin. Twelve SGBs are globally spread in the human gut and show different genomic potential in the utilization of complex polysaccharides, suggesting that higher SGB diversity may be related with increased utilization of plant-based foods. Moreover, up to 11 different species may co-occur in the same subject, with lower diversity in Western populations, as well as intestinal inflammatory states and obesity. The newly explored Faecalibacterium diversity will be able to support the choice of strains suitable as NGPs, guided by the consideration of the differences existing in their functional potential.", "keywords": ["Adult", "0301 basic medicine", "pangenome", "Adolescent", "gut microbiome", "Datasets as Topic", "General Biochemistry", " Genetics and Molecular Biology", "Innovation action", "Feces", "03 medical and health sciences", "Animals", "Humans", "biotherapeutics", "European Commission", "Child", "Life Style", "Faecalibacterium", "Aged", "Aurora Universities Network", "Horizon 2020", "0303 health sciences", "EC", "Geography", "Faecalibacterium prausnitzii", "H2020", "Age Factors", "Infant", "Middle Aged", "Gastrointestinal Microbiome", "Faecalibacterium prausnitzii", " gut microbiome", " strain diversity", " pangenome", " novel probiotics", " biotherapeutics", "Child", " Preschool", "novel probiotics", "Dysbiosis", "Macaca", "Metagenome", "strain diversity", "Metagenomics", "General Agricultural and Biological Sciences"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/819607/1/PIIS0960982220314330.pdf"}, {"href": "https://doi.org/10.1016/j.cub.2020.09.063"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Current%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.cub.2020.09.063", "name": "item", "description": "10.1016/j.cub.2020.09.063", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.cub.2020.09.063"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-12-01T00:00:00Z"}}, {"id": "10.1016/j.colsurfb.2023.113433", "type": "Feature", "geometry": null, "properties": {"updated": "2026-08-25T16:15:28Z", "type": "Journal Article", "created": "2023-06-28", "title": "Contrasting transport and fate of hydrophilic and hydrophobic bacteria in wettable and water-repellent porous media: Straining or attachment?", "description": "Bacterial transport and retention likely depend on bacterial and soil surface properties, especially hydrophobicity. We used a controlled experimental setup to explore hydrophilic Escherichia coli (E. coli) and hydrophobic Rhodococcus erythropolis (PTCC1767) (R. erythropolis) transport through dry (-\u00a015,000\u00a0cm water potential) and water saturated (0\u00a0cm water potential) wettable and water-repellent sand columns. A pulse of bacteria (1\u00a0\u00d7\u00a0108 CFU mL-1) and bromide (10\u00a0mmol\u00a0L-1) moved through the columns under saturated flow (0\u00a0cm) for four pore volumes. A second bacteria and bromide pulse was then poured on the column surfaces and leaching was extended six more pore volumes. In dry wettable sand attachment dominated E. coli retention, whereas R. erythropolis was dominated by straining. Once wetted, the dominant retention mechanisms flipped between these bacteria. Attachment by either bacteria decreased markedly in water-repellent sand, so straining was the main retention mechanism. We explain this from capillary potential energy, which enhanced straining under the formation of water films at very early times (i.e., imbibing) and film thinning at much later times (i.e., draining). The interaction between the hydrophobicity of bacteria and soil on transport, retention and release mechanisms needs greater consideration in predictions.", "keywords": ["Bromides", "2040 Environment and Biodiversity", "570", "Supplementary Information", "Wetting characteristics", "Vadose zone", "610", "Soil", "Colloid and Surface Chemistry", "Sand", "Pore-scale processes", "Escherichia coli", "Physical and Theoretical Chemistry", "European Commission", "101026287", "SDG 15 - Life on Land", "Drought", "T", "Water", "Surfaces and Interfaces", "T Technology", "Interfacial processes", "3. Good health", "TC Hydraulic engineering. Ocean engineering", "Marie Sklodowska-Curie grant", "EU Horizon 2020", "SDG 6 - Clean Water and Sanitation", "TC", "Porosity", "Hydrophobic and Hydrophilic Interactions", "Biotechnology"]}, "links": [{"href": "https://doi.org/10.1016/j.colsurfb.2023.113433"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Colloids%20and%20Surfaces%20B%3A%20Biointerfaces", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.colsurfb.2023.113433", "name": "item", "description": "10.1016/j.colsurfb.2023.113433", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.colsurfb.2023.113433"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-08-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Diversity&offset=50&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Diversity&offset=50&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "prev", "title": "items (prev)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Diversity&offset=0", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Diversity&offset=100", "hreflang": "en-US"}], "numberMatched": 1142, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-08-25T23:47:44.460030Z"}