For a sustainable production of food, research on agricultural soil microbial communities is inevitable. Due to its immense complexity, soil is still some kind of black box. Soil study designs for identifying microbiome members of relevance have various scopes and focus on particular environmental factors. To identify common features of soil microbiomes, data from multiple studies should be compiled and processed. Taxonomic compositions and functional capabilities of microbial communities associated with soils and plants have been identified and characterized in the past few decades. From a fertile Loess\uffe2\uff80\uff93Chernozem-type soil located in Germany, metagenomically assembled genomes (MAGs) classified as members of the phylum Thaumarchaeota/Thermoproteota were obtained. These possibly represent keystone agricultural soil community members encoding functions of relevance for soil fertility and plant health. Their importance for the analyzed microbiomes is corroborated by the fact that they were predicted to contribute to the cycling of nitrogen, feature the genetic potential to fix carbon dioxide and possess genes with predicted functions in plant-growth-promotion (PGP). To expand the knowledge on soil community members belonging to the phylum Thaumarchaeota, we conducted a meta-analysis integrating primary studies on European agricultural soil microbiomes.
ResultsTaxonomic classification of the selected soil metagenomes revealed the shared agricultural soil core microbiome of European soils from 19 locations. Metadata reporting was heterogeneous between the different studies. According to the available metadata, we separated the data into 68 treatments. The phylum Thaumarchaeota is part of the core microbiome and represents a major constituent of the archaeal subcommunities in all European agricultural soils. At a higher taxonomic resolution, 2074 genera constituted the core microbiome. We observed that viral genera strongly contribute to variation in taxonomic profiles. By binning of metagenomically assembled contigs, Thaumarchaeota MAGs could be recovered from several European soil metagenomes. Notably, many of them were classified as members of the family Nitrososphaeraceae, highlighting the importance of this family for agricultural soils. The specific Loess-Chernozem Thaumarchaeota MAGs were most abundant in their original soil, but also seem to be of importance in other agricultural soil microbial communities. Metabolic reconstruction of Switzerland_1_MAG_2 revealed its genetic potential i.a. regarding carbon dioxide (CO$$_2$$ 2 ) fixation, ammonia oxidation, exopolysaccharide production and a beneficial effect on plant growth. Similar genetic features were also present in other reconstructed MAGs. Three Nitrososphaeraceae MAGs are all most likely members of a so far unknown genus.
ConclusionsOn a broad view, European agricultural soil microbiomes are similarly structured. Differences in community structure were observable, although analysis was complicated by heterogeneity in metadata recording. Our study highlights the need for standardized metadata reporting and the benefits of networking open data. Future soil sequencing studies should also consider high sequencing depths in order to enable reconstruction of genome bins. Intriguingly, the family Nitrososphaeraceae commonly seems to be of importance in agricultural microbiomes.
", "keywords": ["2. Zero hunger", "570", "Soil microbial diversity", "Metagenomically assembled genomes", "Research", "European soil", "Open metagenome data analysis", "15. Life on land", "Microbiology", "Thaumarchaeota", "QR1-502", "Environmental sciences", "Agricultural microbiome", "Soil health", "GE1-350"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1186/s40793-023-00479-9.pdf"}, {"href": "https://doi.org/10.1186/s40793-023-00479-9"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40793-023-00479-9", "name": "item", "description": "10.1186/s40793-023-00479-9", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40793-023-00479-9"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-03-30T00:00:00Z"}}, {"id": "10.1016/j.scitotenv.2021.149346", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:15:59Z", "type": "Journal Article", "created": "2021-07-31", "title": "Characterization of the main land processes occurring in Europe (2000-2018) through a MODIS NDVI seasonal parameter-based procedure", "description": "The identification and recognition of the land processes are of vital importance for a proper management of the ecosystem functions and services. However, on-ground land uses/land covers (LULC) characterization is a time-consuming task, often limited to small land areas, which can be solved using remote sensing technologies. The objective of this work is to investigate how the different MODIS NDVI seasonal parameters responded to the main land processes observed in Europe in the 2000-2018 period; characterizing their temporal trend; and evaluating which one reflected better each specific land process. NDVI time-series were evaluated using TIMESAT software, which extracted eight seasonality parameters: amplitude, base value, length of season, maximum value, left and right derivative values and small and large integrated values. These parameters were correlated with the LULC changes derived from COoRdination of INformation on the Environment Land Cover (CLC) for assessing which parameter better characterized each land process. The temporal evolution of the maximum seasonal NDVI was the parameter that better characterized the occurrence of most of the land processes evaluated (afforestation, agriculturalization, degradation, land abandonment, land restoration, urbanization; R2 from 0.67-0.97). Large integrated value also presented significant relationships but they were restricted to two of the three evaluated periods. On the contrary, land processes involving CLC categories with similar NDVI patterns were not well captured with the proposed methodology. These results evidenced that this methodology could be combined with other classification methods for improving LULC identification accuracy or for identifying LULC processes in locations where no LULC maps are available. Such information can be used by policy-makers to draw LULC management actions associated with sustainable development goals. This is especially relevant for areas where food security is at stake and where terrestrial ecosystems are threatened by severe biodiversity loss.", "keywords": ["Land cover", "Urbanization", "CORINE", "Biodiversity", "15. Life on land", "01 natural sciences", "Europe", "Normalized difference vegetation index", "13. Climate action", "Land use", "11. Sustainability", "Seasons", "TIMESAT", "Ecosystem", "Environmental Monitoring", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.iris.unict.it/bitstream/20.500.11769/511362/1/Ramirez-Cuesta%20et%20al%202021.pdf"}, {"href": "https://doi.org/10.1016/j.scitotenv.2021.149346"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.scitotenv.2021.149346", "name": "item", "description": "10.1016/j.scitotenv.2021.149346", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.scitotenv.2021.149346"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-12-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2012.04.004", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:16:06Z", "type": "Journal Article", "created": "2012-04-23", "title": "Biochar But Not Earthworms Enhances Rice Growth Through Increased Protein Turnover", "description": "The aim of this work was to compare the effects of biochar and earthworms on rice growth and to investigate the possible interactions between both. In addition to classic macroscopic variables we also monitored some leaf-level cellular processes involved in protein turnover. Both biochar and earthworms significantly increased shoot biomass production. However, biochar had a higher effect on the number of leaves (\u00fe87%) and earthworms on leaf area (\u00fe89%). Biochar also significantly increased the leaf turnover. At the cellular level, biochar but not earthworms enhanced protein catabolism by an increase in leaf proteolytic activities. This could be related to the increased expression of three of the six genes tested related to protein catabolism, one serine protease gene OsSP2 (\u00fe24%), one aspartic acid protease gene, Oryzasin (\u00fe162%) and one cysteine protease gene OsCatB (\u00fe257%). Furthermore, biochar also enhanced the expression level of two genes linked to protein anabolism, coding for the small and large subunits of rubisco (\u00fe33% and \u00fe30%, for rbcS and rbcL, respectively), the most abundant protein in leaves. In conclusion, our data gives evidence that biochar increased rice biomass production through increased leaf protein turnover (both catabolism and anabolism) whereas earthworms also increased rice biomass production but not through changes in the rate of protein turnover. We hypothesize that earthworms increase nitrogen uptake at a low cost for the plant through a simultaneous increase in mineralization rate and root biomass, probably through the release in the soil of plant growth factors. This could allow plants to accumulate more biomass without an increase in nitrogen metabolism at the leaf level, and without having to support the consecutive energy cost that must bear plants in the biochar treatment. 2012 Elsevier Ltd. All rights reserved.", "keywords": ["0106 biological sciences", "0301 basic medicine", "earthworms", "FAUNE DU SOL", "7. Clean energy", "01 natural sciences", "03 medical and health sciences", "AZOTE", "PROTEINE", "CROISSANCE", "ETUDE COMPARATIVE", "lombriz de tierra", "2. Zero hunger", "BIOMASSE", "BIOCHAR", "biomass", "carbon", "microbiology", "MACROFAUNE", "CHARBON DE BOIS", "carbono", "RIZICULTURE", "biomasa", "oryza sativa", "METABOLISME", "FERTILISATION DU SOL", "carb\u00f3n vegetal", "LOMBRIC", "FEUILLE", "charcoal"], "contacts": [{"organization": "Kam-Rigne Laossi, Juan Andr\u00e9s Cardoso, Patrick Lavelle, Patrick Lavelle, Diana Cristina Noguera, Diana Cristina Noguera, Diana Cristina Noguera, M.H. Cruz de Carvalho, S\u00e9bastien Barot,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2012.04.004"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2012.04.004", "name": "item", "description": "10.1016/j.soilbio.2012.04.004", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2012.04.004"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-09-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2017.12.116", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:15:32Z", "type": "Journal Article", "created": "2018-01-11", "title": "Pharmaceutical concentration variability at sewage treatment plant outlets dominated by hydrology and other factors", "description": "A study was conducted in which the effluent at four small to medium sized sewage treatment plants (STP) in North Rhine-Westphalia, Germany was monitored for three pharmaceutical compounds (carbamazepine, diclofenac, metoprolol) over a period of four years. Grab sampling and auto sampling campaigns were accomplished with respect to various weather conditions in the catchment area. Flow volumes and hydraulic retention times (HRT) from various sampling dates which provide information on processes causing emission changes were additionally taken into account. Monitoring results showed that concentration scattering in the effluent is related to HRT in the sewage treatment plants. Dilution effects following rain events in the catchment area were analysed for the three investigated substances. Short-term emission changes explained by dilution only could be well determined by the mathematical relation between discharge and concentration, and for carbamazepine to be solely determined by the dilution effects at all HRTs. For metoprolol, a clear decrease in concentrations was observed at HRTs above 80\u202fh, and a significant contribution of biodegradation was supported by independent biodegradation tests. For three out of the four STPs, a decrease in concentrations of diclofenac was observed at hydraulic retention times above 80\u202fh, indicating removal, whereas the relationship between concentration and HRT of the other STP could be explained by dilution only. The study shows that emissions can vary with weather conditions, hampering the assessment of emissions and estimation of concentrations in surface waters from generic removal rates only. Furthermore, it illustrates the importance of HRT of rather stable substances in wastewater treatment.", "keywords": ["Diclofenac", "Sewage", "Dilution effects", "Rain", "0211 other engineering and technologies", "02 engineering and technology", "Wastewater", "Waste Disposal", " Fluid", "01 natural sciences", "6. Clean water", "Sewage treatment plants", "12. Responsible consumption", "Biodegradation", " Environmental", "Carbamazepine", "Pharmaceutical Preparations", "13. Climate action", "Germany", "Hydraulic retention times", "Pharmaceuticals", "Hydrology", "Short term emission dynamics", "Water Pollutants", " Chemical", "Environmental Monitoring", "Metoprolol", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2017.12.116"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2017.12.116", "name": "item", "description": "10.1016/j.envpol.2017.12.116", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2017.12.116"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-04-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2018.09.128", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:15:32Z", "type": "Journal Article", "created": "2018-09-28", "title": "A rationale for the high limits of quantification of antibiotic resistance genes in soil", "description": "The determination of values of abundance of antibiotic resistance genes (ARGs) per mass of soil is extremely useful to assess the potential impacts of relevant sources of antibiotic resistance, such as irrigation with treated wastewater or manure application. Culture-independent methods and, in particular, quantitative PCR (qPCR), have been regarded as suitable approaches for such a purpose. However, it is arguable if these methods are sensitive enough to measure ARGs abundance at levels that may represent a risk for environmental and human health. This study aimed at demonstrating the range of values of ARGs quantification that can be expected based on currently used procedures of DNA extraction and qPCR analyses. The demonstration was based on the use of soil samples spiked with known amounts of wastewater antibiotic resistant bacteria (ARB) (Enterococcus faecalis, Escherichia coli, Acinetobacter johnsonii, or Pseudomonas aeruginosa), harbouring known ARGs, and also on the calculation of expected values determined based on qPCR. The limits of quantification (LOQ) of the ARGs (vanA, qnrS, blaTEM, blaOXA, blaIMP, blaVIM) were observed to be approximately 4 log-units per gram of soil dry weight, irrespective of the type of soil tested. These values were close to the theoretical LOQ values calculated based on currently used DNA extraction methods and qPCR procedures. The observed LOQ values can be considered extremely high to perform an accurate assessment of the impacts of ARGs discharges in soils. A key message is that ARGs accumulation will be noticeable only at very high doses. The assessment of the impacts of ARGs discharges in soils, of associated risks of propagation and potential transmission to humans, must take into consideration this type of evidence, and avoid the simplistic assumption that no detection corresponds to risk absence.", "keywords": ["0301 basic medicine", "2. Zero hunger", "LOD - Limit of detection", "0303 health sciences", "Acinetobacter", "Drug Resistance", " Microbial", "Wastewater", "Real-Time Polymerase Chain Reaction", "6. Clean water", "Anti-Bacterial Agents", "3. Good health", "Manure", "Quantitative PCR", "Soil", "03 medical and health sciences", "Genes", " Bacterial", "13. Climate action", "Pseudomonas aeruginosa", "Enterococcus faecalis", "Escherichia coli", "LOQ - Limit of quantification", "Soil Microbiology", "Risk assessment"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2018.09.128"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2018.09.128", "name": "item", "description": "10.1016/j.envpol.2018.09.128", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2018.09.128"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-12-01T00:00:00Z"}}, {"id": "10.1016/j.foreco.2010.09.007", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:15:38Z", "type": "Journal Article", "created": "2010-10-10", "title": "Organic Residue Mass At Planting Is An Excellent Predictor Of Tree Growth In Eucalyptus Plantations Established On A Sandy Tropical Soil", "description": "Abstract Tropical plantation forests are meeting an increasing proportion of global wood demand and comprehensive studies assessing the impact of silvicultural practices on tree and soil functioning are required to achieve sustainable yields. The objectives of our study were: (1) to quantify the effects of contrasting organic residue (OR) retention methods on tree growth and soil nutrient pools over a full Eucalyptus rotation and (2) to assess the potential of soil analyses to predict yields of fast-growing plantations established on tropical sandy soils. An experiment was set up in the Congo at the harvesting of the first rotation after afforestation of a native herbaceous savanna. Six treatments were set up in 0.26\u00a0ha plots and replicated in 4 blocks, with OR mass at planting ranging from 0 to 46.5\u00a0Mg\u00a0ha \u22121 . Tree growth over the whole rotation was highly dependent on OR management at planting. Over-bark trunk volume 7 years after planting ranged from 96\u00a0m 3 \u00a0ha \u22121 in the treatment with forest floor and harvest residue removal at planting to 164\u00a0m 3 \u00a0ha \u22121 in the treatment with the largest amount of OR. A comparison of nutrient stocks within the ecosystem at planting and at the end of the rotation suggested that nutrient contents in OR were largely involved in the different response observed between treatments. OR management treatments did not significantly modify most of the nutrient concentrations in the upper layers of the mineral soil. Conventional soil analyses performed before planting and at ages 1 and 3 years were unable to detect differences between treatments despite large differences in tree growth. In contrast, linear regressions between stand aboveground biomass at harvesting and OR mass at planting (independent variable) showed that OR mass was an excellent predictor of stand yield ( R 2 \u00a0=\u00a00.99). A large share of soil fertility comes from organic material above the mineral soil in highly weathered sandy soils and OR mass at planting might be used in conjunction with soil analyses to assess the potential of these soils to support forest plantations.", "keywords": ["0106 biological sciences", "570", "http://aims.fao.org/aos/agrovoc/c_7170", "[SDV]Life Sciences [q-bio]", "rendement des cultures", "Slash", "F62 - Physiologie v\u00e9g\u00e9tale - Croissance et d\u00e9veloppement", "for\u00eat tropicale", "01 natural sciences", "630", "http://aims.fao.org/aos/agrovoc/c_10176", "http://aims.fao.org/aos/agrovoc/c_24904", "sol tropical", "http://aims.fao.org/aos/agrovoc/c_16118", "http://aims.fao.org/aos/agrovoc/c_5387", "2. Zero hunger", "Eucalyptus", "substance nutritive", "r\u00e9sidu de r\u00e9colte", "P35 - Fertilit\u00e9 du sol", "http://aims.fao.org/aos/agrovoc/c_1811", "15. Life on land", "croissance", "Carbon", "sol sableux", "K10 - Production foresti\u00e8re", "[SDV] Life Sciences [q-bio]", "fertilit\u00e9 du sol", "Residue", "Fertility", "http://aims.fao.org/aos/agrovoc/c_3394", "Indicator", "http://aims.fao.org/aos/agrovoc/c_7978", "mati\u00e8re organique", "Organic matter", "plantations", "http://aims.fao.org/aos/agrovoc/c_5274", "http://aims.fao.org/aos/agrovoc/c_6781", "http://aims.fao.org/aos/agrovoc/c_5990", "Nutrient", "http://aims.fao.org/aos/agrovoc/c_2683"]}, "links": [{"href": "https://doi.org/10.1016/j.foreco.2010.09.007"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Forest%20Ecology%20and%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.foreco.2010.09.007", "name": "item", "description": "10.1016/j.foreco.2010.09.007", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.foreco.2010.09.007"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-12-01T00:00:00Z"}}, {"id": "/publisher", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:06Z", "type": "Dataset", "title": "Soil moisture and temperature datasets in LIDO orchard", "description": "Soil moisture and temperature timeserie datasets of the apple orchard located in the Laimburg Integrated Digital Orchard in Bolzano province. The timeseries collects data about soil moisture and temperature at 20 cm, 30 cm and 40 cm under the soil surface in 3 different position of the orchard. Acquisition frequency is 30 minutes for all the parameters.", "keywords": ["agricultural-and-aquaculture-facilities", "cct", "eu", "sensor", "soil", "soil-moisture", "temperature", "water"]}, "links": [{"href": "https://doi.org/10.48784/d41997c7-d9ea-4f10-bd2e-baf1d96bb8f8"}, {"href": "http://data.europa.eu/88u/dataset/d41997c7-d9ea-4f10-bd2e-baf1d96bb8f8"}, {"rel": "self", "type": "application/geo+json", "title": "/publisher", "name": "item", "description": "/publisher", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items//publisher"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"null": "date"}}, {"id": "-Str\u00e4nders-jordart-och-eroderbarhet", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[11.03, 55.36], [11.03, 69.11], [23.9, 69.11], [23.9, 55.36], [11.03, 55.36]]]}, "properties": {"themes": [{"concepts": [{"id": "geoscientificInformation"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "National"}], "scheme": "https://inspire.ec.europa.eu/metadata-codelist/SpatialScope"}, {"concepts": [{"id": "MensMeu"}], "scheme": "Source"}, {"concepts": [{"id": "Sweden"}], "scheme": "http://publications.europa.eu/resource/authority/country"}, {"concepts": [{"id": "soil erosion"}], "scheme": "http://aims.fao.org/aos/agrovoc/c_330883"}], "updated": "2019-01-01", "type": "Dataset", "language": "swe", "title": "Beach soil type and erodability", "description": "Localisation of erosion of soil and beaches", "formats": [{"name": "application/pdf"}, {"name": "web"}, {"name": "OGC:WMS"}, {"name": "canonical"}], "keywords": ["soil degradation processes", "National", "MensMeu", "Sweden", "soil erosion"], "contacts": [{"name": "Johan Stendahl,", "organization": "Swedish University of Agricultural Sciences (SLU)", "position": null, "roles": ["pointOfContact"], "phones": [{"value": null}], "emails": [{"value": "johan.stendahl@slu.se"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": "Sweden"}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": null, "name_url": "", "description": null, "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}]}, "links": [{"href": "https://resource.sgu.se/dokument/produkter/produktblad/strandernas-jordart-och-eroderbarhet.pdf", "name": "PDF", "protocol": "application/pdf", "rel": null}, {"href": "https://apps.sgu.se/sgumapviewer/kartvisare-stranders-jordart-eroderbarhet.html", "name": "Web application", "protocol": "web", "rel": null}, {"href": "https://maps3.sgu.se/geoserver/jord/wms", "name": "jord:SE.GOV.SGU.JORD.GRUNDLAGER.STRAND_JORDART.25K", "description": "JORDART", "protocol": "OGC:WMS", "rel": null}, {"href": "https://maps3.sgu.se/geoserver/jord/wms", "name": "jord:SE.GOV.SGU.JORD.GRUNDLAGER.STRAND_ERODERBARHET.25K", "description": "ERODERBARHET", "protocol": "OGC:WMS", "rel": null}, {"href": "https://github.com/ejpsoil/ejpsoildatahub/tree/main/datasets/mensmeu/Sweden/-Stranders-jordart-och-eroderbar.yml", "name": "Source of the record", "protocol": "canonical", "rel": "canonical"}, {"rel": "self", "type": "application/geo+json", "title": "-Str\u00e4nders-jordart-och-eroderbarhet", "name": "item", "description": "-Str\u00e4nders-jordart-och-eroderbarhet", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/-Str\u00e4nders-jordart-och-eroderbarhet"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"null": "date"}}, {"id": "/", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:06Z", "type": "Dataset", "title": "DrSch\u00e4r mais field monitoring timeseries", "description": "Timeseries of the DrSch\u00e4r field monitoring in Este (PD) during summer 2022. Dataset of the soil temperature and soil humidity collected from different type of sensors distributed among the mais field. In the field were installed different types of sensors as many TDR sensors and one capacitive sensor; they collect temperature and humidity of the soil. The data from the sensor were collected by two networks: a Zigbee-based and one LoraWAN-based network.", "keywords": ["capacitive", "environmental-monitoring-facilities", "eu", "humidity", "irrigation", "lorawan", "mais", "sensor", "soil", "soil-moisture", "tdr", "temperature", "water", "zigbee"]}, "links": [{"href": "http://data.europa.eu/88u/dataset/17af841d-1329-4c5a-a8b8-c4326f0614f9"}, {"rel": "self", "type": "application/geo+json", "title": "/", "name": "item", "description": "/", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items//"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"null": "date"}}, {"id": "0086CC52-6F67-4393-99BE-7D3AB1B84160", "type": "Feature", "geometry": null, "properties": {"themes": [{"concepts": [{"id": "geoscientificInformation"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "National"}], "scheme": "https://inspire.ec.europa.eu/metadata-codelist/SpatialScope"}, {"concepts": [{"id": "MensMeu"}], "scheme": "Source"}, {"concepts": [{"id": "Germany"}], "scheme": "http://publications.europa.eu/resource/authority/country"}, {"concepts": [{"id": "Soil Map"}], "scheme": "http://aims.fao.org/aos/agrovoc/c_330883"}], "updated": "2006-01-01", "type": "Dataset", "created": "01-01-2006", "language": "ger", "title": "Ground map of the Federal Republic of Germany 1:5.000.000", "description": "Soil Map of the Federal Republic of Germany 1:5,000,000. Focused on information about the parent material, and generalization", "formats": [{"name": "ogc:wms"}, {"name": "application/shp"}, {"name": "canonical"}], "keywords": ["soil type", "basic soil properties", "National", "MensMeu", "Germany", "Soil Map"], "contacts": [{"name": "Bundesanstalt f\u00fcr Geowissenschaften und Rohstoffe (BGR)", "organization": "Bundesanstalt f\u00fcr Geowissenschaften und Rohstoffe (BGR)", "position": "Technischer Ansprechpartner", "roles": ["distributor"], "phones": [{"value": null}], "emails": [{"value": "geodatenmanagement@bgr.de"}], "addresses": [{"deliveryPoint": ["Stilleweg 2"], "city": "Hannover", "administrativeArea": "DE-NI", "postalCode": "30655", "country": "DE"}], "links": [{"href": {"url": "https://www.bgr.bund.de/buek5000", "protocol": null, "protocol_url": "", "name": null, "name_url": "", "description": null, "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Stegger Ulrich", "organization": "Bundesanstalt f\u00fcr Geowissenschaften und Rohstoffe (BGR)", "position": null, "roles": ["pointOfContact"], "phones": [{"value": null}], "emails": [{"value": "geodatenmanagement@bgr.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": "Germany"}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": null, "name_url": "", "description": null, "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}]}, "links": [{"href": "https://services.bgr.de/wms/boden/buek5000/?", "name": "0", "description": "Die hier vorliegende Boden\u00fcbersichtskarte im Ma\u00dfstab 1:5.000.000 (B\u00dcK5000) wurde durch eine weitere inhaltliche und r\u00e4umliche Zusammenfassung aus den Legendeneinheiten der B\u00dcK1000N abgeleitet. Diese Zusammenfassung orientierte sich an den Angaben zu den Bodenausgangsgesteinen und f\u00fchrte zu 20 bodenkundlichen (23) Legendeneinheiten mit Kartenpolygonen von mindestens 64 Quadratkilometern Gr\u00f6\u00dfe.", "protocol": "ogc:wms", "rel": null}, {"href": "https://download.bgr.de/bgr/Boden/BGL5000/shp/bgl5000_v20.zip", "name": "SHP", "protocol": "application/shp", "rel": null}, {"href": "https://github.com/ejpsoil/ejpsoildatahub/tree/main/datasets/mensmeu/Germany/0086CC52-6F67-4393-99BE-7D3AB1B8.yml", "name": "Source of the record", "protocol": "canonical", "rel": "canonical"}, {"rel": "self", "type": "application/geo+json", "title": "0086CC52-6F67-4393-99BE-7D3AB1B84160", "name": "item", "description": "0086CC52-6F67-4393-99BE-7D3AB1B84160", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/0086CC52-6F67-4393-99BE-7D3AB1B84160"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-01-01T00:00:00Z"}}, {"id": "10.1002/jeq2.20119", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:15Z", "type": "Journal Article", "created": "2020-07-01", "title": "Global Research Alliance N2O chamber methodology guidelines: Summary of modeling approaches", "description": "AbstractMeasurements of nitrous oxide (N2O) emissions from agriculture are essential for understanding the complex soil\uffe2\uff80\uff93crop\uffe2\uff80\uff93climate processes, but there are practical and economic limits to the spatial and temporal extent over which measurements can be made. Therefore, N2O models have an important role to play. As models are comparatively cheap to run, they can be used to extrapolate field measurements to regional or national scales, to simulate emissions over long time periods, or to run scenarios to compare mitigation practices. Process\uffe2\uff80\uff90based models can also be used as an aid to understanding the underlying processes, as they can simulate feedbacks and interactions that can be difficult to distinguish in the field. However, when applying models, it is important to understand the conceptual process differences in models, how conceptual understanding changed over time in various models, and the model requirements and limitations to ensure that the model is well suited to the purpose of the investigation and the type of system being simulated. The aim of this paper is to give the reader a high\uffe2\uff80\uff90level overview of some of the important issues that should be considered when modeling. This includes conceptual understanding of widely used models, common modeling techniques such as calibration and validation, assessing model fit, sensitivity analysis, and uncertainty assessment. We also review examples of N2O modeling for different purposes and describe three commonly used process\uffe2\uff80\uff90based N2O models (APSIM, DayCent, and DNDC).Earthworms are a key faunal group in agricultural soils, but little is known on how farming systems affect their communities across wide climatic gradients and how farming system choice might mediate earthworms' exposure to climate conditions. Here, we studied arable soil earthworm communities on wheat fields across a European climatic gradient, covering nine pedo\uffe2\uff80\uff90climatic zones, from Mediterranean to Boreal (S to N) and from Lusitanian to Pannonian (W to E). In each zone, 20\uffe2\uff80\uff9325 wheat fields under conventional or organic farming were sampled. Community metrics (total abundance, fresh mass, and species richness and composition) were combined with data on climate conditions, soil properties, and field management and analyzed with mixed models. There were no statistically discernible differences between organic and conventional farming for any of the community metrics. The effects of refined arable management factors were also not detected, except for an elevated proportion of subsurface\uffe2\uff80\uff90feeding earthworms when crop residues were incorporated. Soil properties were not significantly associated with earthworm community variations, which in the case of soil texture was likely due to low variation in the data. Pedo\uffe2\uff80\uff90climatic zone was an overridingly important factor in explaining the variation in community metrics. The Boreal zone had the highest mean total abundance (179\uffe2\uff80\uff89individuals\uffe2\uff80\uff89m\uffe2\uff88\uff922) and fresh mass (86\uffe2\uff80\uff89g\uffe2\uff80\uff89m\uffe2\uff88\uff922) of earthworms while the southernmost Mediterranean zones had the lowest metrics (<1\uffe2\uff80\uff89individual\uffe2\uff80\uff89m\uffe2\uff88\uff922 and <1\uffe2\uff80\uff89g\uffe2\uff80\uff89m\uffe2\uff88\uff922). Within each field, species richness was low across the zones, with the highest values being recorded at the Nemoral and North Atlantic zones (mean of 2\uffe2\uff80\uff933 species per field) and declining from there toward north and south. No litter\uffe2\uff80\uff90dwelling species were found in the southernmost, Mediterranean zones. These regional trends were discernibly related to climate, with the community metrics declining with the increasing mean annual temperature. The current continent\uffe2\uff80\uff90wide warming of Europe and related increase of severe and rapid onsetting droughts will likely deteriorate the living conditions of earthworms, particularly in southern Europe. The lack of interaction between the pedo\uffe2\uff80\uff90climatic zone and the farming system in our data for any of the earthworm community metrics may indicate limited opportunities for alleviating the negative effects of a warming climate in cereal field soils of Europe.Drylands worldwide are experiencing rapid and extensive environmental change, concomitant with the encroachment of woody vegetation into grasslands. Woody encroachment leads to changes in both the structure and function of dryland ecosystems and has been shown to result in accelerated soil erosion and loss of soil nutrients. Covering 40% of the terrestrial land surface, dryland environments are of global importance, both as a habitat and a soil carbon store. Relationships between environmental change, soil erosion, and the carbon cycle are uncertain. There is a clear need to further our understanding of dryland vegetation change and impacts on carbon dynamics. Here two grass\uffe2\uff80\uff90to\uffe2\uff80\uff90woody ecotones that occur across large areas of the southwestern United States are investigated. This study takes a multidisciplinary approach, combining ecohydrological monitoring of structure and function and a dual\uffe2\uff80\uff90proxy biogeochemical tracing approach using the unique natural biochemical signatures of the vegetation. Results show that following woody encroachment, not only do these drylands lose significantly more soil and organic carbon via erosion but that this includes significant amounts of legacy organic carbon which would previously have been stable under grass cover. Results suggest that these dryland soils may not act as a stable organic carbon pool, following encroachment and that accelerated erosion of carbon, driven by vegetation change, has important implications for carbon dynamics.
", "keywords": ["2. Zero hunger", "soil erosion", "info:eu-repo/classification/ddc/550", "550", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "soil carbon pool", "13. Climate action", "biogeochemical tracing", "woody encroachment", "0401 agriculture", " forestry", " and fisheries", "Geosciences", " Multidisciplinary", "dryland vegetation change", "Environmental Sciences", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1002/2014jg002635"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Geophysical%20Research%3A%20Biogeosciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/2014jg002635", "name": "item", "description": "10.1002/2014jg002635", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/2014jg002635"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-12-01T00:00:00Z"}}, {"id": "10.1002/adfm.201910259", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:12Z", "type": "Journal Article", "created": "2020-03-12", "title": "All\u2010Dielectric Programmable Huygens' Metasurfaces", "description": "AbstractLow\uffe2\uff80\uff90loss nanostructured dielectric metasurfaces have emerged as a breakthrough platform for ultrathin optics and cutting\uffe2\uff80\uff90edge photonic applications, including beam shaping, focusing, and holography. However, the static nature of their constituent materials has traditionally limited them to fixed functionalities. Tunable all\uffe2\uff80\uff90dielectric infrared Huygens' metasurfaces consisting of multi\uffe2\uff80\uff90layer Ge disk meta\uffe2\uff80\uff90units with strategically incorporated non\uffe2\uff80\uff90volatile phase change material Ge3Sb2Te6 are introduced. Switching the phase\uffe2\uff80\uff90change material between its amorphous and crystalline structural state enables nearly full dynamic light phase control with high transmittance in the mid\uffe2\uff80\uff90IR spectrum. The metasurface is realized experimentally, showing post\uffe2\uff80\uff90fabrication tuning of the light phase within a range of 81% of the full 2\uffcf\uff80 phase shift. Additionally, the versatility of the tunable Huygen's metasurfaces is demonstrated by optically programming the spatial light phase distribution of the metasurface with single meta\uffe2\uff80\uff90unit precision and retrieving high\uffe2\uff80\uff90resolution phase\uffe2\uff80\uff90encoded images using hyperspectral measurements. The programmable metasurface concept overcomes the static limitations of previous dielectric metasurfaces, paving the way for \uffe2\uff80\uff9cuniversal\uffe2\uff80\uff9d metasurfaces and highly efficient, ultracompact active optical elements like tunable lenses, dynamic holograms, and spatial light modulators.The temporal imbalance between the release and sequestration of forest carbon has raised a fundamental concern about the climate mitigation potential of forest biomass for energy. The potential carbon debt caused by harvest and the resulting time spans needed to reach pre\uffe2\uff80\uff90harvest carbon levels (payback) or those of a reference case (parity) have become important parameters for climate and bioenergy policy developments. The present range of analyses however varies in assumptions, regional scopes, and conclusions. Comparing these modeling efforts, we reveal that they apply different principle modeling frameworks while results are largely affected by the same parameters. The size of the carbon debt is mostly determined by the type and amount of biomass harvested and whether land\uffe2\uff80\uff90use change emissions need to be accounted for. Payback times are mainly determined by plant growth rates, i.e. the forest biome, tree species, site productivity and management. Parity times are primarily influenced by the choice and construction of the reference scenario and fossil carbon displacement efficiencies. Using small residual biomass (harvesting/processing), deadwood from highly insect\uffe2\uff80\uff90infected sites, or new plantations on highly productive or marginal land offers (almost) immediate net carbon benefits. Their eventual climate mitigation potential however is determined by the effectiveness of the fossil fuel displacement. We deem it therefore unsuitable to define political guidance by feedstock alone. Current global wood pellet production is predominantly residue based. Production increases based on low\uffe2\uff80\uff90grade stemwood are expected in regions with a downturn in the local wood product sector, highlighting the importance of accounting for regional forest carbon trends. \uffc2\uffa9 2013 Society of Chemical Industry and John Wiley & Sons, Ltd
", "keywords": ["carbon payback", "0211 other engineering and technologies", "carbon neutrality", "02 engineering and technology", "bioenergy", "15. Life on land", "7. Clean energy", "13. Climate action", "11. Sustainability", "SDG 13 - Climate Action", "0202 electrical engineering", " electronic engineering", " information engineering", "forest biomass", "carbon parity", "Temporal carbon", "carbon debt", "SDG 15 - Life on Land"]}, "links": [{"href": "https://doi.org/10.1002/bbb.1407"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biofuels%2C%20Bioproducts%20and%20Biorefining", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/bbb.1407", "name": "item", "description": "10.1002/bbb.1407", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/bbb.1407"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-04-12T00:00:00Z"}}, {"id": "10.1002/biot.202000165", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:13Z", "type": "Journal Article", "created": "2020-10-21", "title": "Engineering Native and Synthetic Pathways in Pseudomonas putida for the Production of Tailored Polyhydroxyalkanoates", "description": "AbstractGrowing environmental concern sparks renewed interest in the sustainable production of (bio)materials that can replace oil\uffe2\uff80\uff90derived goods. Polyhydroxyalkanoates (PHAs) are isotactic polymers that play a critical role in the central metabolism of producer bacteria, as they act as dynamic reservoirs of carbon and reducing equivalents. PHAs continue to attract industrial attention as a starting point toward renewable, biodegradable, biocompatible, and versatile thermoplastic and elastomeric materials. Pseudomonas species have been known for long as efficient biopolymer producers, especially for medium\uffe2\uff80\uff90chain\uffe2\uff80\uff90length PHAs. The surge of synthetic biology and metabolic engineering approaches in recent years offers the possibility of exploiting the untapped potential of Pseudomonas cell factories for the production of tailored PHAs. In this article, an overview of the metabolic and regulatory circuits that rule PHA accumulation in Pseudomonas putida is provided, and approaches leading to the biosynthesis of novel polymers (e.g., PHAs including nonbiological chemical elements in their structures) are discussed. The potential of novel PHAs to disrupt existing and future market segments is closer to realization than ever before. The review is concluded by pinpointing challenges that currently hinder the wide adoption of bio\uffe2\uff80\uff90based PHAs, and strategies toward programmable polymer biosynthesis from alternative substrates in engineered P. putida strains are proposed.
", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Biopolymer", "PHA", "Pseudomonas putida", "Polyhydroxyalkanoates", "Carbon", "12. Responsible consumption", "03 medical and health sciences", "/dk/atira/pure/sustainabledevelopmentgoals/affordable_and_clean_energy; name=SDG 7 - Affordable and Clean Energy", "Metabolic Engineering", "Pseudomonas", "Pathway engineering", "Metabolic engineering", "Synthetic biology"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/biot.202000165"}, {"href": "https://doi.org/10.1002/biot.202000165"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biotechnology%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/biot.202000165", "name": "item", "description": "10.1002/biot.202000165", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/biot.202000165"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-09T00:00:00Z"}}, {"id": "10.1002/cjce.24572", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:13Z", "type": "Journal Article", "created": "2022-07-30", "title": "Computational analysis of flow conditions in hydrodynamic cavitation generator for water treatment processes", "description": "AbstractThe research on the potential of cavitation exploitation is currently an extremely interesting topic. To reduce the costs and time of the cavitation reactor optimization, nowadays, experimental optimization is supplemented and even replaced using computational fluid dynamics (CFD). One of the approaches towards sustainable water treatment is the use of the cavitation reactor with bluff elements mounted on its stator and rotor. The experimental results show that, besides the rotational speed, the spacing of the rotor pins has the most significant effect on the cavitation intensity and effectiveness, while the pin diameter and the surface roughness are less significant design parameters. The present paper uses a simplified CFD approach to investigate the conditions in the reactor and to select the optimal among a number of geometry variations.
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