{"type": "FeatureCollection", "features": [{"id": "PMC7593201", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:27:10Z", "type": "Journal Article", "created": "2020-09-22", "title": "Background insect herbivory increases with local elevation but makes minor contribution to element cycling along natural gradients in the Subarctic", "description": "Abstract<p>Herbivores can exert major controls over biogeochemical cycling. As invertebrates are highly sensitive to temperature shifts (ectothermal), the abundances of insects in high\uffe2\uff80\uff90latitude systems, where climate warming is rapid, is expected to increase. In subarctic mountain birch forests, research has focussed on geometrid moth outbreaks, while the contribution of background insect herbivory (BIH) to elemental cycling is poorly constrained. In northern Sweden, we estimated BIH along 9 elevational gradients distributed across a gradient in regional elevation, temperature, and precipitation to allow evaluation of consistency in local versus regional variation. We converted foliar loss via BIH to fluxes of C, nitrogen (N), and phosphorus (P) from the birch canopy to the soil to compare with other relevant soil inputs of the same elements and assessed different abiotic and biotic drivers of the observed variability. We found that leaf area loss due to BIH was ~1.6% on average. This is comparable to estimates from tundra, but considerably lower than ecosystems at lower latitudes. The C, N, and P fluxes from canopy to soil associated with BIH were 1\uffe2\uff80\uff932 orders of magnitude lower than the soil input from senesced litter and external nutrient sources such as biological N fixation, atmospheric deposition of N, and P weathering estimated from the literature. Despite the minor contribution to overall elemental cycling in subarctic birch forests, the higher quality and earlier timing of the input of herbivore deposits to soils compared to senesced litter may make this contribution disproportionally important for various ecosystem functions. BIH increased significantly with leaf N content as well as local elevation along each transect, yet showed no significant relationship with temperature or humidity, nor the commonly used temperature proxy, absolute elevation. The lack of consistency between the local and regional elevational trends calls for caution when using elevation gradients as climate proxies.</p", "keywords": ["0106 biological sciences", "OPEROPHTERA-BRUMATA", "MOTH HERBIVORY", "insect herbivory", "NUTRIENT RESORPTION", "EPIRRITA-AUTUMNATA", "PLANT DEFENSES", "space\u2010for\u2010time substitution", "carbon cycling", "01 natural sciences", "fast cycle versus slow cycle", "LITTER DECOMPOSITION", "MOUNTAIN BIRCH", "Subarctic mountain birch forest", "QH540-549.5", "Original Research", "Ekologi", "CLIMATE-CHANGE", "Ecology", "LEAF-AREA INDEX", "space-for-time substitution", "nutrient cycling", "15. Life on land", "Climate Science", "ECOSYSTEM CARBON", "13. Climate action", "Klimatvetenskap"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/ece3.6803"}, {"href": "https://doi.org/PMC7593201"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC7593201", "name": "item", "description": "PMC7593201", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC7593201"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-06-08T00:00:00Z"}}, {"id": "10.1002/ece3.6803", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:14:02Z", "type": "Journal Article", "created": "2020-09-22", "title": "Background insect herbivory increases with local elevation but makes minor contribution to element cycling along natural gradients in the Subarctic", "description": "Abstract<p>Herbivores can exert major controls over biogeochemical cycling. As invertebrates are highly sensitive to temperature shifts (ectothermal), the abundances of insects in high\uffe2\uff80\uff90latitude systems, where climate warming is rapid, is expected to increase. In subarctic mountain birch forests, research has focussed on geometrid moth outbreaks, while the contribution of background insect herbivory (BIH) to elemental cycling is poorly constrained. In northern Sweden, we estimated BIH along 9 elevational gradients distributed across a gradient in regional elevation, temperature, and precipitation to allow evaluation of consistency in local versus regional variation. We converted foliar loss via BIH to fluxes of C, nitrogen (N), and phosphorus (P) from the birch canopy to the soil to compare with other relevant soil inputs of the same elements and assessed different abiotic and biotic drivers of the observed variability. We found that leaf area loss due to BIH was ~1.6% on average. This is comparable to estimates from tundra, but considerably lower than ecosystems at lower latitudes. The C, N, and P fluxes from canopy to soil associated with BIH were 1\uffe2\uff80\uff932 orders of magnitude lower than the soil input from senesced litter and external nutrient sources such as biological N fixation, atmospheric deposition of N, and P weathering estimated from the literature. Despite the minor contribution to overall elemental cycling in subarctic birch forests, the higher quality and earlier timing of the input of herbivore deposits to soils compared to senesced litter may make this contribution disproportionally important for various ecosystem functions. BIH increased significantly with leaf N content as well as local elevation along each transect, yet showed no significant relationship with temperature or humidity, nor the commonly used temperature proxy, absolute elevation. The lack of consistency between the local and regional elevational trends calls for caution when using elevation gradients as climate proxies.</p>", "keywords": ["0106 biological sciences", "OPEROPHTERA-BRUMATA", "MOTH HERBIVORY", "insect herbivory", "NUTRIENT RESORPTION", "EPIRRITA-AUTUMNATA", "PLANT DEFENSES", "space\u2010for\u2010time substitution", "carbon cycling", "01 natural sciences", "fast cycle versus slow cycle", "LITTER DECOMPOSITION", "MOUNTAIN BIRCH", "Subarctic mountain birch forest", "QH540-549.5", "Original Research", "Ekologi", "CLIMATE-CHANGE", "Ecology", "LEAF-AREA INDEX", "space-for-time substitution", "nutrient cycling", "15. Life on land", "Climate Science", "ECOSYSTEM CARBON", "13. Climate action", "Klimatvetenskap"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/ece3.6803"}, {"href": "https://doi.org/10.1002/ece3.6803"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.6803", "name": "item", "description": "10.1002/ece3.6803", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.6803"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-06-08T00:00:00Z"}}, {"id": "10.1002/ece3.6547", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:14:02Z", "type": "Journal Article", "created": "2020-07-09", "title": "The distribution of herbivores between leaves matches their performance only in the absence of competitors", "description": "Abstract<p>Few studies have tested how plant quality and the presence of competitors interact in determining how herbivores choose between different leaves within a plant. We investigated this in two herbivorous spider mites sharing tomato plants: Tetranychus urticae, which generally induces plant defenses, and Tetranychus evansi, which suppresses them, creating asymmetrical effects on coinfesting competitors. On uninfested plants, both herbivore species preferred young leaves, coinciding with increased mite performance. On plants with heterospecifics, the mites did not prefer leaves on which they had a better performance. In particular, T.\uffc2\uffa0urticae avoided leaves infested with T.\uffc2\uffa0evansi, which is in agreement with T.\uffc2\uffa0urticae being outcompeted by T.\uffc2\uffa0evansi. In contrast, T.\uffc2\uffa0evansi did not avoid leaves with the other species, but distributed itself evenly over plants infested with heterospecifics. We hypothesize that this behavior of T.\uffc2\uffa0evansi may prevent further spread of T.\uffc2\uffa0urticae over the shared plant. Our results indicate that leaf age determines within\uffe2\uff80\uff90plant distribution of herbivores only in absence of competitors. Moreover, they show that this distribution depends on the order of arrival of competitors and on their effects on each other, with herbivores showing differences in behavior within the plant as a possible response to the outcome of those interactions.</p", "keywords": ["0106 biological sciences", "0301 basic medicine", "570", "Ecology", "interspecific competition", "spider mites", "577", "within\u2010plant distribution", "01 natural sciences", "03 medical and health sciences", "host\u2010plant quality", "plant defenses", "QH540-549.5", "Original Research"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/ece3.6547"}, {"href": "https://doi.org/10.1002/ece3.6547"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.6547", "name": "item", "description": "10.1002/ece3.6547", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.6547"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-07-09T00:00:00Z"}}, {"id": "10.1111/1365-2745.13504", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:18:20Z", "type": "Journal Article", "created": "2020-09-25", "title": "Invasive earthworms reduce chemical defense and increase herbivory and pathogen infection in native trees", "description": "Abstract<p>   <p>Recent research shows that earthworms can alter defense traits of plants against herbivores and pathogens by affecting soil biochemistry. Yet, the effects of invasive earthworms on defense traits of native plants from previously earthworm\uffe2\uff80\uff90free ecosystems as well as the consequences for multitrophic interactions are virtually unknown.</p>  <p>Here we use a combination of an observational study and a complementary experimental study to investigate the effects of invasive earthworms on leaf defense traits, herbivore damage and pathogen infection in two poplar tree species (Populus balsamifera and Populus tremuloides) native to North American boreal forests.</p>  <p>Our observational study showed that earthworm invasion was associated with enhanced leaf herbivory (by leaf\uffe2\uff80\uff90chewing insects) in saplings of both tree species. However, we only detected significant shifts in the concentration of chemical defense compounds in response to earthworm invasion for P. balsamifera. Specifically, leaf phenolic concentrations, including salicinoids and catechin, were lower in P. balsamifera from earthworm\uffe2\uff80\uff90invaded sites.</p>  <p>Our experimental study confirmed an earthworm\uffe2\uff80\uff90induced reduction in leaf defense levels in P. balsamifera for one of the defense compounds, tremulacin. The experimental study additionally showed that invasive earthworms reduced leaf dry matter content, potentially increasing leaf palatability, and enhanced susceptibility of trees to infection by a fungal pathogen, but not to aphid infestation, in the same tree species.</p>  <p>Synthesis. Our results show that invasive earthworms can decrease the concentrations of some chemical defense compounds in P. balsamifera, which could make them susceptible to leaf\uffe2\uff80\uff90chewing insects. Such potential impacts of invasive earthworms are likely to have implications for tree survival and competition, native tree biodiversity and ecosystem functioning.</p>  </p>", "keywords": ["0106 biological sciences", "multi-trophic interactions", "secondary metabolites", "15. Life on land", "01 natural sciences", "invasion ecology", "plant\u2013herbivore interactions", "13. Climate action", "international", "physical defense", "570 Life sciences; biology", "boreal forests", "Plan_S-Compliant_TA", "Research Articles", "belowground invasion"]}, "links": [{"href": "https://boris.unibe.ch/152111/1/1365-2745.13504.pdf"}, {"href": "https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/1365-2745.13504"}, {"href": "https://doi.org/10.1111/1365-2745.13504"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2745.13504", "name": "item", "description": "10.1111/1365-2745.13504", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2745.13504"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-09T00:00:00Z"}}, {"id": "10.1007/s11829-011-9173-0", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:15:11Z", "type": "Journal Article", "created": "2011-12-28", "title": "Drought Stress Affects Constitutive But Not Induced Herbivore Resistance In Apple Plants", "description": "Arthropod-Plant Interactions, 6 (2)", "keywords": ["2. Zero hunger", "0106 biological sciences", "0301 basic medicine", "Spodoptera littoralis", "15. Life on land", "01 natural sciences", "6. Clean water", "Growth-differentiation balance hypothesis", "Climate change; Constitutive and induced defense; Growth-differentiation balance hypothesis; Malus domestica; Spodoptera littoralis", "03 medical and health sciences", "Malus domestica", "13. Climate action", "Climate change", "Constitutive and induced defense"], "contacts": [{"organization": "Gutbrodt, Bettina, Dorn, Silvia, Mody, Karsten,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s11829-011-9173-0"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Arthropod-Plant%20Interactions", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11829-011-9173-0", "name": "item", "description": "10.1007/s11829-011-9173-0", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11829-011-9173-0"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-12-29T00:00:00Z"}}, {"id": "10.1007/s11829-012-9234-z", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:15:11Z", "type": "Journal Article", "created": "2012-11-17", "title": "Effects Of Drought, Temperature, Herbivory, And Genotype On Plant-Insect Interactions In Soybean (Glycine Max)", "description": "Climate change is predicted to cause continued increases in global temperatures, greater variability in precipitation and in some cases, more frequent insect pest outbreaks. Here we seek to understand how abiotic and biotic stresses associated with climate change can affect plant-herbivore interactions in a model crop species (soybean, Glycine max (L.) Merr.) by answering three questions: (1) Do the combined effects of abiotic and biotic stresses associated with climate change cause synergistic negative effects on plant biomass? (2) Can abiotic stress affect resistance of plants to insect herbivores? (3) Does genetic variation in plant traits modify a plant\u2019s response to stress? We performed three experiments in controlled growth environments using up to 51 soybean genotypes selected to vary in numerous traits associated with drought and resistance against pests (e.g., insect herbivores, nematodes, and pathogenic fungi), and up to 3 generalist-feeding herbivorous noctuid moth species (Helicoverpa zea, Heliothis virescens, and Spodoptera exigua) that commonly feed on soybean in North America. Drought and herbivory had the largest and the most consistent negative effects on plant performance, reducing the above- and below-ground biomass by 10-45 %, whereas increased temperature had little to no effect on plants. Drought also increased susceptibility to generalist noctuid herbivores, but these results varied dramatically in magnitude and direction among plant genotypes. Our experiments show that the effects of abiotic and biotic stress on soybean biomass were largely due to the additive effects of these stresses, and there exists substantial genetic variation in the soybean germplasm pool we studied that could be used as a source of parental stock in breeding new crops that can more effectively tolerate and resist the combined negative effects of insect herbivory and drought.", "keywords": ["2. Zero hunger", "0301 basic medicine", "570", "0303 health sciences", "15. Life on land", "Herbivore resistance", "630", "6. Clean water", "Legume", "03 medical and health sciences", "Pulsed stress hypothesis", "Plant defense", "13. Climate action", "Plant stress hypothesis", "Wilt avoidance"], "contacts": [{"organization": "Grinnan, Rose, Carter, Thomas E., Jr., Johnson, Marc T. J.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s11829-012-9234-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Arthropod-Plant%20Interactions", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11829-012-9234-z", "name": "item", "description": "10.1007/s11829-012-9234-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11829-012-9234-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-11-18T00:00:00Z"}}, {"id": "10.5061/dryad.51c59zwgj", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:20:54Z", "type": "Dataset", "created": "2024-04-02", "title": "Data from: Evidence for reductions in physical and chemical plant defense traits in island flora", "description": "Open Access# Evidence for Reductions in Physical and Chemical Plant Defense Traits in  Island Flora  [https://doi.org/10.5061/dryad.51c59zwgj](https://doi.org/10.5061/dryad.51c59zwgj) This dataset consists of three primary data sources: (1) Morphological and chemical measurements of leaf traits, collected from five taxonomic pairs of chaparral shrubs (*Ceanothus megacarpus*, *Cercocarpus betuloides*, *Dendromecon rigida/harfordii*, *Heteromeles arbutifolia*, *Prunus ilicifolia*) at three sites on the California Channel Islands (Santa Rosa, Santa Cruz, Santa Catalina) and three sites on the California mainland. (2) Morphological and chemical measurements of the same leaf traits from the same species, but this time measured from plants growing at botanic gardens (3) Morphological, chemical, and biomass data from a common garden experiment with *Stachys bullata*, with genotypes from two islands (Santa Rosa, Santa Cruz) and four mainland locations In addition, our analysis also includes bioclimatic data and local precipitation data accessed from publicly available sources. ## Description of the data and file structure This dataset is organized into two folders: **data_files** and **scripts** --- ***DATA_FILES*** Within the **data_files** folder, there are folders for '**Shrubs**' (corresponding to 1 and 2 above) and '**Stachys**' (corresponding to 3 above). **SHRUBS** The **Shrubs** folder contains one file (**Bowen and Van Vuren Effect Sizes.xlsx**), which summarizes the results from Bowen and Van Vuren (1997 ([https://www.jstor.org/stable/2387407](https://www.jstor.org/stable/2387407), directly as reported in their Tables 2, 3, 4, and 5 in the main text. Variables in this datafile include: 1. Trait - the plant trait that was measured in their study 2. Genus - the taxonomic unit being measured 3. t - the value of the t-statistic from a paired t-test of island vs. mainland samples for a given genus 4. n island - sample size for island plants 5. n mainland - sample size for mainland plants 6. Cohen's D - derived value that expresses insularity effect size for a given measure The **Shrubs** folder also contains four subfolders: **Cyanide**, **Images**, **Mapping**, and **Morphology** The **Cyanide** folder contains two files: 1. **cyanide_calibration.csv** - file containing measurements used to define calibration curve for quantifying evolved HCN from leaf tissue. 1. conc = concentration of potassium cyanide (KCN) standard used in calibration (mg/L) 2. abs = absorbance value returned by VWR V-1200 spectrometer, measured at 510 nm 2. **cyanide_measurements.csv** - file containing measurements of evolved HCN from field and botanic garden leaf tissue. PlantID values are the same as those reported for all other morphological measurements. 'NA' values in this dataset correspond to samples whose absorbance values were outside the range of our calibration curve or that were otherwise not suitable to include in analysis. 1. Age = whether leaf tissue was newly expanded ('young') or mature ('old') 2. Tissue_Mass = amount of frozen tissue used in assay (mg) 3. Dilution 1 = amount of water (mL) into which evolved HCN (in NaOH) was added prior to titration with citric acid. This value is 30 mL for all samples. 4. Dilution 2 = dilution factor. Here, a value of 1 means that 5 mL of citrate buffer was mixed with 5 mL water (1:1 ratio) and used in the subsequent reaction. A value of 10 means that 1 mL of citrate buffer was mixed with 10 mL water (1:10 ratio). 5. Sample Concentration = concentration of HCN in sample (mg/L), calculated using the calibration curve above. Samples with absorbance values above 0.500 were omitted and re-measured at reduced concentration, as this was beyond the concentration limit recommended by the manufacturer instructions. 6. Tissue Concentration = value relating dilution factor and sample mass to sample concentration. Expressed in milligrams of HCN per gram of leaf tissue. The **Images** folder contains all scanned leaf images (n = 626). File names correspond to plant species, plant ID, sampling site, and canopy position (see chaparral_leaf_morphology.csv below for a full description). So, for example, CMEG44_SMM_Upper refers to Ceanothus megacarpus, Plant ID = 44, sampled from the Santa Monica Mountains (SMM), upper canopy. Note also that each leaf within each image is individually numbered. The **Mapping** folder contains two files: 1. **shrubs_coordinates.csv** - contains coordinates and elevation for all field-sampled plants, recorded using a handheld Garmin GPS unit 2. **site_coordinates.csv** - contains broad site-level coordinates used for making map in Figure 1 The **Morphology** folder contains two files: 1. **chaparral_leaf_morphology.csv** - the primary datafile for this study, with each row (n = 5665) corresponding to a single leaf. For a visual depiction of the measurement protocol, see Supplemental Figures. Leaf measurements reported as NA generally correspond to leaves that were severely damaged, from which measurements could be reliably taken. 1. Index = sorting variable 2. IM = refers to whether a given plant was growing at an island or mainland site 3. Source = the original provenance of a given plant. For all field-sampled plants, the value here is the same as the value for 'Site' 4. Site = the location where plants were sampled. Includes all field sampling locations as well as the two botanic gardens 5. Exclosure = yes/no variable, only relevant to Catalina Island, describing whether sampled plant was inside of a deer exclosure 6. Species = taxon being measured 7. Plant = Plant ID, a unique value for each individual plant. Note that botanic garden samples have their own non-integer codes, and for Rancho Santa Ana Botanic Garden, these codes can be cross-referenced against the garden's living collections 8. Position = refers to whether a sampled branch came from the upper (&gt;2m) or lower portion of the plant's canopy 9. Aspect = recorded from the Garmin GPS, refers to predominant downward slope direction. Not recorded for botanic garden plants (marked as NA) or for plants from completely flat ground. 10. Elevation = elevation in meters of sampled plants 11. Diameter1 = diameter (cm) of the primary plant trunk at 0.25m (NA means that stem could not be reliably measured) 12. Diameter2 = diameter (cm) of any secondary plant trunk at 0.25m (only applicable for multi-stemmed plants; NA means that stem could not be reliably measured) 13. Stem_Area = derived measure of stem area (cm^2), based on trunk diameter, used as a rough proxy for plant age (NA means that stem could not be reliably measured) 14. 1st_year = refers to whether an individual leaf was newly emerged growth (1) or fully expanded and mature (0) 15. Leaf_ID = corresponds to the numbers in each leaf scan; identifies each individual leaf from a given branch 16. Leaf_Length = leaf length (cm) along its primary axis, excluding the petiole 17. Leaf_Area_petiole = leaf area (cm^2), including the petiole 18. Leaf_Area_no.petiole = leaf area (cm^2), excluding the petiole 19. Internal_area_correction = cumulative area of any 'holes' missing within the leaf perimeter (cm^2) 20. True_area = Leaf_Area_no.petiole minus Internal_area_correction (cm^2) 21. Leaf_area_corrected = leaf area, after manually filling in gaps missing due to presumed herbivore damage (cm^2) 22. Leaf_area_corrected_final = Leaf_area_corrected minus Internal_area_correction (cm^2) 23. Area_no_spines = leaf area after connecting vertices created by leaf spines (cm^2), using to calculate spinescence (%) 2. **shrub_leaf_masses.csv** - cumulative mass (g) of fully expanded leaf tissue from each branch, summed across all individual leaves. Used for calculating specific leaf area (SLA). **STACHYS** The **Stachys** folder contains three subfolders: **Chemistry**, **Morphology**, and **Setup** The **Chemistry** folder contains two files and one sub-directory: 1. **stachys_chromatograms** contains raw GC-MS readout for six leaf chemistry samples. Within each of the corresponding subfolders, the tic_front.csv file was used to generate the chromatograms shown in Figure 6A. 2. **stachys_compound_list.csv** is the full list of compounds detected in our samples. RT refers to the retention time (in minutes) of each compound. Identifications are putative. 3. **stachys_leaf_vocs.csv** is the full data matrix of leaf volatile compounds, with each sample as its own row and data columns each corresponding to a single compound. Values in this data matrix correspond to integrated peak areas, which are a proxy for the abundance of each compound. The **Morphology** folder contains two files: 1. **Anet-stbu.xlsx** contains gas exchange measurements for 26 plants measured in the common garden. The gas exchange column is net carbon assimilation, expressed as CO2 uptake per unit time per unit leaf area (\u00b5mol of CO2 m-2 s-1). 2. **sla_sbbg.csv** contains specific leaf area measurements for *Stachys* plants in the common garden. Note that plant #54 had died by the time of data collection, hence its values of NA across all columns. 1. ID = individual plant ID 2. SLA = cumulative area/ cumulative mass (cm^2/g) 3. leaves = refers to the number of leaves used for generating SLA measurement 4. area/leaf = cumulative area/ leaf number (cm^2/leaf) The **Setup** folder contains three files: 1. **321dailys.xls** is a file containing annual precipitation records (inches) for the Santa Barbara Botanic Garden, accessed from: [https://www.countyofsb.org/2328/Daily-Rainfall-Data-XLS](https://www.countyofsb.org/2328/Daily-Rainfall-Data-XLS) 2. **Field_Setup_SBBG.csv** is the primary file containing details on the primary garden experiment. Note that samples with masses recorded as NA were either dead at the time of sampling. Plants grown on Santa Cruz Island have values of NA for row and column, as this common garden was not arranged in a grid. 1. Index = individual plant ID 2. Population = provenance of plant 3. Garden = whether plants were grown at the Santa Barbara Botanic Garden (primary common garden site) or at the field station on Santa Cruz Island (secondary garden location with only Santa Cruz genotypes) 4. Genotype = identifier given to field-collected rhizomes, which were then propagated and split prior to planting out 5. Cumulative_Mass = mass (g) of paper bag and all of its contents, used for measuring end-of-season plant aboveground biomass 6. Bag_Mass = mass (g) of bag itself (without its contents) 7. Inside_Bag_Mass = mass (g) of smaller paper bags contained within larger bags, including all of their contents. Though not analyzed, these inside bags included all plant biomass collected from outside of the gopher cage that plants were growing in. 8. Inside_Bag_Only_Mass = as above, mass (g) of inner bag itself (without its contents) 9. Year = whether biomass was collected in 2016 or 2017 10. Row = grid location within common garden. Row 1 was at the bottom of the slope shown in Figure 2. 11. Column = grid location within common garden. 3. **stachys_coordinates.csv** contains coordinates for the six collecting sites, used to make the map in Figure 2. --- ***SCRIPTS*** All analyses for this project were conducted in the R programming language (version 4.1.3). Scripts used for analysis are arranged in two folders: **Shrubs** and **Stachys** The **Shrubs** folder contains the following scripts: 1. **coordinates_shrubs_stachys.R** - script used for generating all maps, including those in Figures 1 and 2 and the Google Earth maps in the supplementary figures 2. **cyanide_calibration.R** - script for plotting the calibration curve for relating evolved absorbance values to evolved HCN 3. **shrub_leaf_morphology_chemistry.R** - primary analysis script for manuscript, containing all major statistical analyses and plotting 4. **shrubs_BioClim.R** - script used for extracting bioclimatic data for field-sampled plants; containing code generating climate figures shown in supplementary materials The **Stachys** folder contains the following scripts: 1. **sbbg_precip_data.R** - very short script for summarizing water year totals for 2017 at the Santa Barbara Botanic Garden 2. **stachys_analysis.R** - primary script for generating all analyses and figures for *Stachys* common garden data 3. **stbu_gas_exchange.R** - script for analyzing gas exchange in common garden *Stachys* Note that for recreating some analyses and figures, users will need a Google Maps API key and will need to download data from the bioclim database. --- ## Sharing/Access information Data, code, and figures associated with this project are also available on GitHub at the following link: [https://github.com/micahfreedman/manuscripts/tree/master/Island_Mainland](https://github.com/micahfreedman/manuscripts/tree/master/Island_Mainland)", "keywords": ["Islands", "Morphology", "Dendromecon", "cyanogenic glycosides", "Ecology", "Terpenes", "Cercocarpus", "California Channel Islands", "Chemical ecology", "marginal spines", "Specific leaf area", "Plant science", "Heteromeles", "FOS: Biological sciences", "Stachys", "Other", "Prunus", "Herbivory", "Plant defenses", "Plant-herbivore interactions", "Ceanothus", "Ecology", " Evolution", " Behavior and Systematics"], "contacts": [{"organization": "Freedman, Micah", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.51c59zwgj"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.51c59zwgj", "name": "item", "description": "10.5061/dryad.51c59zwgj", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.51c59zwgj"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "10.1016/j.peptides.2021.170696", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:16:37Z", "type": "Journal Article", "created": "2021-11-29", "title": "Immunomodulatory peptides\u2014A promising source for novel functional food production and drug discovery", "description": "Immunomodulatory peptides are a complex class of bioactive peptides that encompasses substances with different mechanisms of action. Immunomodulatory peptides could also be used in vaccines as adjuvants which would be extremely desirable, especially in response to pandemics. Thus, immunomodulatory peptides in food of plant origin could be regarded both as valuable suplements of novel functional food preparation and/or as precursors or possible active ingredients for drugs design for treatment variety of conditions arising from impaired function of immune system. Given variety of mechanisms, different tests are required to assess effects of immunomodulatory peptides. Some of those effects show good correlation with in vivo results but others, less so. Certain plant peptides, such as defensins, show both immunomodulatory and antimicrobial effect, which makes them interesting candidates for preparation of functional food and feed, as well as templates for design of synthetic peptides.", "keywords": ["0301 basic medicine", "2. Zero hunger", "Vaccines", "570", "0303 health sciences", "Immunomodulatory peptides  Defensin  Cryptic peptide  Functional food  Mechanism of action  Vaccines", "Functional food", "Cryptic peptide", "610", "Mechanism of action", "3. Good health", "Defensins", "Immunomodulation", "03 medical and health sciences", "Immunomodulatory peptide", "Defensin", "Functional Food", "Drug Discovery", "Humans", "Peptides", "Settore BIOS-10/A - Biologia cellulare e applicata", "Immunomodulatory peptides Defensin Cryptic peptide Functional food Mechanism of action Vaccines", "Plant Proteins"]}, "links": [{"href": "https://doi.org/10.1016/j.peptides.2021.170696"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Peptides", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.peptides.2021.170696", "name": "item", "description": "10.1016/j.peptides.2021.170696", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.peptides.2021.170696"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-02-01T00:00:00Z"}}, {"id": "10.1038/s41598-023-50104-5", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:17:37Z", "type": "Journal Article", "created": "2023-12-16", "title": "Polystyrene nanoparticles induce concerted response of plant defense mechanisms in plant cells", "description": "Abstract<p>Recent advances in knowledge suggest that micro- and nanoplastics pose a threat to plant health, however, the responses of plants to this stressor are not well-known. Here we examined the response of plant cell defence mechanisms to nanoparticles of commonly used plastic, polystyrene. We used plant cell cultures of widely cultivated plants, the monocots wheat and barley (Triticum aestivum L., Hordeum vulgare L.) and the dicots carrot and tomato (Daucus carota L., Solanum lycopersicum L.). We measured the activities of enzymes involved in the scavenging of reactive oxygen species and nonenzymatic antioxidants and we estimated potential damages in plant cell structures and functioning via lipid peroxidation and DNA methylation levels. Our results demonstrate that the mode of action of polystyrene nanoparticles on plant cells involves oxidative stress. However, the changes in plant defence mechanisms are dependent on plant species, exposure time and nanoplastic concentrations. In general, both monocots showed similar responses to nanoplastics, but the carrot followed more the response of monocots than a second dicot, a tomato. Higher H2O2, lipid peroxidation and lower enzyme activities scavenging H2O2 suggest that tomato cells may be more susceptible to polystyrene-induced stress. In conclusion, polystyrene nanoplastics induce oxidative stress and the response of the plant defense mechanisms involving several chain reactions leading to oxidoreductive homeostasis.</p", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Science", "Microplastics", "Q", "R", "Hydrogen Peroxide", "Plants", "15. Life on land", "Article", "Antioxidants", "03 medical and health sciences", "Plant Cells", "Medicine", "Polystyrenes", "Nanoparticles", "Defense Mechanisms"]}, "links": [{"href": "https://www.nature.com/articles/s41598-023-50104-5.pdf"}, {"href": "https://doi.org/10.1038/s41598-023-50104-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Scientific%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41598-023-50104-5", "name": "item", "description": "10.1038/s41598-023-50104-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41598-023-50104-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-16T00:00:00Z"}}, {"id": "10.3389/fphys.2019.00745", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:20:16Z", "type": "Journal Article", "created": "2019-06-21", "title": "Transcriptome and Metabolome Reprogramming in Tomato Plants by Trichoderma harzianum strain T22 Primes and Enhances Defense Responses Against Aphids", "description": "Beneficial fungi in the genus Trichoderma are among the most widespread biocontrol agents of plant pathogens. Their role in triggering plant defenses against pathogens has been intensely investigated, while, in contrast, very limited information is available on induced barriers active against insects. The growing experimental evidence on this latter topic looks promising, and paves the way toward the development of Trichoderma strains and/or consortia active against multiple targets. However, the predictability and reproducibility of the effects that these beneficial fungi is still somewhat limited by the lack of an in-depth understanding of the molecular mechanisms underlying the specificity of their interaction with different crop varieties, and on how the environmental factors modulate this interaction. To fill this research gap, here we studied the transcriptome changes in tomato plants (cultivar 'Dwarf San Marzano') induced by Trichoderma harzianum (strain T22) colonization and subsequent infestation by the aphid Macrosiphum euphorbiae. A wide transcriptome reprogramming, related to metabolic processes, regulation of gene expression and defense responses, was induced both by separate experimental treatments, which showed a synergistic interaction when concurrently applied. The most evident expression changes of defense genes were associated with the multitrophic interaction Trichoderma-tomato-aphid. Early and late genes involved in direct defense against insects were induced (i.e., peroxidase, GST, kinases and polyphenol oxidase, miraculin, chitinase), along with indirect defense genes, such as sesquiterpene synthase and geranylgeranyl phosphate synthase. Targeted and untargeted semi-polar metabolome analysis revealed a wide metabolome alteration showing an increased accumulation of isoprenoids in Trichoderma treated plants. The wide array of transcriptomic and metabolomics changes nicely fit with the higher mortality of aphids when feeding on Trichoderma treated plants, herein reported, and with the previously observed attractiveness of these latter toward the aphid parasitoid Aphidius ervi. Moreover, Trichoderma treated plants showed the over-expression of transcripts coding for several families of defense-related transcription factors (bZIP, MYB, NAC, AP2-ERF, WRKY), suggesting that the fungus contributes to the priming of plant responses against pest insects. Collectively, our data indicate that Trichoderma treatment of tomato plants induces transcriptomic and metabolomic changes, which underpin both direct and indirect defense responses.", "keywords": ["defence", "defense", "0301 basic medicine", "2. Zero hunger", "0303 health sciences", "03 medical and health sciences", "aphid", "Physiology", "QP1-981", "RNA-Seq", "semi-polarmetabolome", "San Marzano", " aphid", " RNA-Seq", " semi-polarmetabolome", " defence", "San Marzano"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/753615/2/Coppola%202019a%20fphys%20Transc%20metab%20tom%20T22%20defresp%20aphids.pdf"}, {"href": "https://doi.org/10.3389/fphys.2019.00745"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fphys.2019.00745", "name": "item", "description": "10.3389/fphys.2019.00745", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fphys.2019.00745"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-06-21T00:00:00Z"}}, {"id": "10.1371/journal.pbio.3002127", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:19:07Z", "type": "Journal Article", "created": "2023-05-18", "title": "A glycan receptor kinase facilitates intracellular accommodation of arbuscular mycorrhiza and symbiotic rhizobia in the legume Lotus japonicus", "description": "<p>Receptors that distinguish the multitude of microbes surrounding plants in the environment enable dynamic responses to the biotic and abiotic conditions encountered. In this study, we identify and characterise a glycan receptor kinase, EPR3a, closely related to the exopolysaccharide receptor EPR3. Epr3a is up-regulated in roots colonised by arbuscular mycorrhizal (AM) fungi and is able to bind glucans with a branching pattern characteristic of surface-exposed fungal glucans. Expression studies with cellular resolution show localised activation of the Epr3a promoter in cortical root cells containing arbuscules. Fungal infection and intracellular arbuscule formation are reduced in epr3a mutants. In vitro, the EPR3a ectodomain binds cell wall glucans in affinity gel electrophoresis assays. In microscale thermophoresis (MST) assays, rhizobial exopolysaccharide binding is detected with affinities comparable to those observed for EPR3, and both EPR3a and EPR3 bind a well-defined \uffce\uffb2-1,3/\uffce\uffb2-1,6 decasaccharide derived from exopolysaccharides of endophytic and pathogenic fungi. Both EPR3a and EPR3 function in the intracellular accommodation of microbes. However, contrasting expression patterns and divergent ligand affinities result in distinct functions in AM colonisation and rhizobial infection in Lotus japonicus. The presence of Epr3a and Epr3 genes in both eudicot and monocot plant genomes suggest a conserved function of these receptor kinases in glycan perception.</p", "keywords": ["570", "QH301-705.5", "ANZSRC::30 Agricultural", "MESORHIZOBIUM-LOTI", "Plant Roots", "veterinary and food sciences", "ROOT", "Polysaccharides", "Gene Expression Regulation", " Plant", "Mycorrhizae", "CELL", "Biology (General)", "Symbiosis", "Glucans", "Plant Proteins", "FUNGAL", "PERCEPTION", "ANZSRC::31 Biological sciences", "LAMINARIN", "Phosphotransferases", "500", "TRANSFORMATION", "EVOLUTION", "ANZSRC::32 Biomedical and clinical sciences", "DEFENSE RESPONSES", "Mutation", "Lotus", "EXOPOLYSACCHARIDE", "Root Nodules", " Plant", "Research Article", "Rhizobium"]}, "links": [{"href": "https://doi.org/10.1371/journal.pbio.3002127"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pbio.3002127", "name": "item", "description": "10.1371/journal.pbio.3002127", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pbio.3002127"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-05-18T00:00:00Z"}}, {"id": "10.1111/j.1654-1103.2004.tb02276.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:18:43Z", "type": "Journal Article", "created": "2006-07-21", "title": "Nutrient Limitation And Nutrient-Driven Shifts In Plant Species Composition In A Species-Rich Fen Meadow", "description": "Abstract:<p>Question:  We studied the development and persistence of the effects of nutrient pulses on biomass production and species composition in a fen meadow.</p><p>Location:  Nature reserve, central Netherlands, 5 m a.s.l.</p><p>Methods:  Single pulse fertilization with N and P in a factorial design on an undrained central and a drained margin site in a species\uffe2\uff80\uff90rich fen meadow (Cirsio dissecti\uffe2\uff80\uff90Molinietum). Biomass production and species composition were monitored during four years.</p><p>Results:  At the central site, N addition boosted biomass production, but only during one year. The species composition was not changed. P fertilization increased the biomass production and changed the species composition from a vegetation dominated by Carex panicea to a grassland community with abundant Holcus lanatus, but not before the second year. At the margin site, P fertilization changed the species composition in a similar way, but biomass production was not increased. N fertilization had no effect. At both sites the P induced shift in species composition persisted for four years although the P effect declined during the experiment.</p><p>Conclusions:  The biomass responses show that N was limiting in the central site. Another nutrient, besides N and P (probably K) must have been limiting in the marginal site. The fast decline of the N effect on biomass is ascribed to increased denitrification and biomass removal. The delay in the P effect on biomass and species composition and the persistence of the P effect on species composition are ascribed to fast immobilisation and subsequent slow release of fertilizer P in the peat soil. Recurrence of the P pulses is expected to cause permanent changes in species composition.</p>", "keywords": ["peat soils", "0106 biological sciences", "enrichment", "tundra", "availability", "netherlands", "fens", "01 natural sciences", "7. Clean energy", "nitrogen", "diversity", "flooding", "vegetation", "mineral-nutrition", "phosphorus", "plant ecology", "2. Zero hunger", "biomass", "species diversity", "Aquatic Ecology", "nature reserves", "04 agricultural and veterinary sciences", "wild plants", "15. Life on land", "eutrophication", "community", "0401 agriculture", " forestry", " and fisheries", "gelderland"], "contacts": [{"organization": "van der Hoek, D., van Mierlo, A.J.E.M., van Groenendael, J.M.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1111/j.1654-1103.2004.tb02276.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Vegetation%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1654-1103.2004.tb02276.x", "name": "item", "description": "10.1111/j.1654-1103.2004.tb02276.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1654-1103.2004.tb02276.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-01-01T00:00:00Z"}}, {"id": "10.2307/3237027", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:20:03Z", "type": "Journal Article", "created": "2006-05-07", "title": "Nutrient Supply In Undrained And Drained Calthion Meadows", "description": "<p>Abstract.  Plant species\uffe2\uff80\uff90rich Calthion meadows on mesotrophic fen peat soil extensively cut for hay are among the endangered semi\uffe2\uff80\uff90natural vegetation types in northwestern Europe. They are often badly affected by lowering the groundwater table (drainage) and fertilization.</p><p>In a comparative study of an undrained site with a Calthion meadow and an adjacent drained site, availability of N, P and K was biologically assessed under field conditions (for two years) as well as in a greenhouse (for 18 weeks) by measuring shoot responsiveness. Also, experimental wetting of intact turf samples taken from both sites was applied in order to study the interaction between nutrient supply and anaerobic soil conditions. It was concluded that the above\uffe2\uff80\uff90ground phytomass yield in the undrained site was restricted by a major shortage of N\uffe2\uff80\uff90supply and a moderate shortage of K\uffe2\uff80\uff90supply by the fen peat soil. The above\uffe2\uff80\uff90ground phytomass yield of the drained site was only reduced by a strongly limited supply of K by the soil. The extent of K\uffe2\uff80\uff90deficiency was larger for the drained site. No P\uffe2\uff80\uff90deficiency was observed in any of the drained or undrained sites. Rewetting turf samples, taken from the drained site, did not change above\uffe2\uff80\uff90ground phytomass yields, suggesting that nutrient supplies were not affected by rewetting. Leaching has likely resulted in a strong reduction of K\uffe2\uff80\uff90supply in the drained site. It is assumed that a shortage in K\uffe2\uff80\uff90supply from the peat soil may have become an important environmental constraint for characteristic plant species of Calthion meadows. This may hamper the development of this meadow type on drained peat soils after rewetting by groundwater discharge.</p>", "keywords": ["DYNAMICS", "0106 biological sciences", "NRS", "restoration", "GRASSLAND", "LIMITATION", "GROUNDWATER", "fen peat", "15. Life on land", "01 natural sciences", "SOIL", "VEGETATION PATTERNS", "ADLIB-ART-1990", "fertilization", "ITC-ISI-JOURNAL-ARTICLE", "FERTILIZER APPLICATION", "plant species richness", "macronutrient deficiency", "COMMUNITIES", "drainage", "management", "SEDIMENTS", "FENS"], "contacts": [{"organization": "JA Inberg, D. M. Pegtel, I.C. van Duren, BA Aerts,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.2307/3237027"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Vegetation%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2307/3237027", "name": "item", "description": "10.2307/3237027", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2307/3237027"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1997-12-01T00:00:00Z"}}, {"id": "10182/16842", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:23:45Z", "type": "Journal Article", "created": "2023-05-18", "title": "A glycan receptor kinase facilitates intracellular accommodation of arbuscular mycorrhiza and symbiotic rhizobia in the legume Lotus japonicus", "description": "<p>Receptors that distinguish the multitude of microbes surrounding plants in the environment enable dynamic responses to the biotic and abiotic conditions encountered. In this study, we identify and characterise a glycan receptor kinase, EPR3a, closely related to the exopolysaccharide receptor EPR3. Epr3a is up-regulated in roots colonised by arbuscular mycorrhizal (AM) fungi and is able to bind glucans with a branching pattern characteristic of surface-exposed fungal glucans. Expression studies with cellular resolution show localised activation of the Epr3a promoter in cortical root cells containing arbuscules. Fungal infection and intracellular arbuscule formation are reduced in epr3a mutants. In vitro, the EPR3a ectodomain binds cell wall glucans in affinity gel electrophoresis assays. In microscale thermophoresis (MST) assays, rhizobial exopolysaccharide binding is detected with affinities comparable to those observed for EPR3, and both EPR3a and EPR3 bind a well-defined \uffce\uffb2-1,3/\uffce\uffb2-1,6 decasaccharide derived from exopolysaccharides of endophytic and pathogenic fungi. Both EPR3a and EPR3 function in the intracellular accommodation of microbes. However, contrasting expression patterns and divergent ligand affinities result in distinct functions in AM colonisation and rhizobial infection in Lotus japonicus. The presence of Epr3a and Epr3 genes in both eudicot and monocot plant genomes suggest a conserved function of these receptor kinases in glycan perception.</p", "keywords": ["570", "QH301-705.5", "ANZSRC::30 Agricultural", "MESORHIZOBIUM-LOTI", "Plant Roots", "veterinary and food sciences", "ROOT", "Polysaccharides", "Gene Expression Regulation", " Plant", "Mycorrhizae", "CELL", "Biology (General)", "Symbiosis", "Glucans", "Plant Proteins", "FUNGAL", "PERCEPTION", "ANZSRC::31 Biological sciences", "LAMINARIN", "Phosphotransferases", "500", "TRANSFORMATION", "EVOLUTION", "ANZSRC::32 Biomedical and clinical sciences", "DEFENSE RESPONSES", "Mutation", "Lotus", "EXOPOLYSACCHARIDE", "Root Nodules", " Plant", "Research Article", "Rhizobium"]}, "links": [{"href": "https://doi.org/10182/16842"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10182/16842", "name": "item", "description": "10182/16842", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10182/16842"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-05-18T00:00:00Z"}}, {"id": "10451/45438", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:23:56Z", "type": "Journal Article", "created": "2020-07-09", "title": "The distribution of herbivores between leaves matches their performance only in the absence of competitors", "description": "Abstract<p>Few studies have tested how plant quality and the presence of competitors interact in determining how herbivores choose between different leaves within a plant. We investigated this in two herbivorous spider mites sharing tomato plants: Tetranychus urticae, which generally induces plant defenses, and Tetranychus evansi, which suppresses them, creating asymmetrical effects on coinfesting competitors. On uninfested plants, both herbivore species preferred young leaves, coinciding with increased mite performance. On plants with heterospecifics, the mites did not prefer leaves on which they had a better performance. In particular, T.\uffc2\uffa0urticae avoided leaves infested with T.\uffc2\uffa0evansi, which is in agreement with T.\uffc2\uffa0urticae being outcompeted by T.\uffc2\uffa0evansi. In contrast, T.\uffc2\uffa0evansi did not avoid leaves with the other species, but distributed itself evenly over plants infested with heterospecifics. We hypothesize that this behavior of T.\uffc2\uffa0evansi may prevent further spread of T.\uffc2\uffa0urticae over the shared plant. Our results indicate that leaf age determines within\uffe2\uff80\uff90plant distribution of herbivores only in absence of competitors. Moreover, they show that this distribution depends on the order of arrival of competitors and on their effects on each other, with herbivores showing differences in behavior within the plant as a possible response to the outcome of those interactions.</p", "keywords": ["0106 biological sciences", "0301 basic medicine", "570", "Ecology", "interspecific competition", "spider mites", "577", "within\u2010plant distribution", "01 natural sciences", "03 medical and health sciences", "host\u2010plant quality", "plant defenses", "QH540-549.5", "Original Research"]}, "links": [{"href": "https://repositorio.ulisboa.pt/bitstream/10451/45438/1/Godinho_Ecol%26Evol_2020.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/ece3.6547"}, {"href": "https://doi.org/10451/45438"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10451/45438", "name": "item", "description": "10451/45438", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10451/45438"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-07-09T00:00:00Z"}}, {"id": "11381/2905288", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:24:06Z", "type": "Journal Article", "created": "2021-11-29", "title": "Immunomodulatory peptides\u2014A promising source for novel functional food production and drug discovery", "description": "Immunomodulatory peptides are a complex class of bioactive peptides that encompasses substances with different mechanisms of action. Immunomodulatory peptides could also be used in vaccines as adjuvants which would be extremely desirable, especially in response to pandemics. Thus, immunomodulatory peptides in food of plant origin could be regarded both as valuable suplements of novel functional food preparation and/or as precursors or possible active ingredients for drugs design for treatment variety of conditions arising from impaired function of immune system. Given variety of mechanisms, different tests are required to assess effects of immunomodulatory peptides. Some of those effects show good correlation with in vivo results but others, less so. Certain plant peptides, such as defensins, show both immunomodulatory and antimicrobial effect, which makes them interesting candidates for preparation of functional food and feed, as well as templates for design of synthetic peptides.", "keywords": ["0301 basic medicine", "2. Zero hunger", "Vaccines", "570", "0303 health sciences", "Functional food", "Cryptic peptide", "610", "Mechanism of action", "3. Good health", "Defensins", "Immunomodulation", "03 medical and health sciences", "Immunomodulatory peptide", "Defensin", "Functional Food", "Drug Discovery", "Humans", "Peptides", "Settore BIOS-10/A - Biologia cellulare e applicata", "Plant Proteins"]}, "links": [{"href": "https://doi.org/11381/2905288"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Peptides", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "11381/2905288", "name": "item", "description": "11381/2905288", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/11381/2905288"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-02-01T00:00:00Z"}}, {"id": "11588/753615", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:24:11Z", "type": "Journal Article", "created": "2019-06-21", "title": "Transcriptome and Metabolome Reprogramming in Tomato Plants by Trichoderma harzianum strain T22 Primes and Enhances Defense Responses Against Aphids", "description": "Beneficial fungi in the genus Trichoderma are among the most widespread biocontrol agents of plant pathogens. Their role in triggering plant defenses against pathogens has been intensely investigated, while, in contrast, very limited information is available on induced barriers active against insects. The growing experimental evidence on this latter topic looks promising, and paves the way toward the development of Trichoderma strains and/or consortia active against multiple targets. However, the predictability and reproducibility of the effects that these beneficial fungi is still somewhat limited by the lack of an in-depth understanding of the molecular mechanisms underlying the specificity of their interaction with different crop varieties, and on how the environmental factors modulate this interaction. To fill this research gap, here we studied the transcriptome changes in tomato plants (cultivar 'Dwarf San Marzano') induced by Trichoderma harzianum (strain T22) colonization and subsequent infestation by the aphid Macrosiphum euphorbiae. A wide transcriptome reprogramming, related to metabolic processes, regulation of gene expression and defense responses, was induced both by separate experimental treatments, which showed a synergistic interaction when concurrently applied. The most evident expression changes of defense genes were associated with the multitrophic interaction Trichoderma-tomato-aphid. Early and late genes involved in direct defense against insects were induced (i.e., peroxidase, GST, kinases and polyphenol oxidase, miraculin, chitinase), along with indirect defense genes, such as sesquiterpene synthase and geranylgeranyl phosphate synthase. Targeted and untargeted semi-polar metabolome analysis revealed a wide metabolome alteration showing an increased accumulation of isoprenoids in Trichoderma treated plants. The wide array of transcriptomic and metabolomics changes nicely fit with the higher mortality of aphids when feeding on Trichoderma treated plants, herein reported, and with the previously observed attractiveness of these latter toward the aphid parasitoid Aphidius ervi. Moreover, Trichoderma treated plants showed the over-expression of transcripts coding for several families of defense-related transcription factors (bZIP, MYB, NAC, AP2-ERF, WRKY), suggesting that the fungus contributes to the priming of plant responses against pest insects. Collectively, our data indicate that Trichoderma treatment of tomato plants induces transcriptomic and metabolomic changes, which underpin both direct and indirect defense responses.", "keywords": ["defence", "defense", "2. Zero hunger", "0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "aphid", "Physiology", "QP1-981", "RNA-Seq", "semi-polarmetabolome", "San Marzano", " aphid", " RNA-Seq", " semi-polarmetabolome", " defence", "San Marzano"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/753615/2/Coppola%202019a%20fphys%20Transc%20metab%20tom%20T22%20defresp%20aphids.pdf"}, {"href": "https://doi.org/11588/753615"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "11588/753615", "name": "item", "description": "11588/753615", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/11588/753615"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-06-21T00:00:00Z"}}, {"id": "1854/LU-01HDKBPVW8Y8ZFTAZJ3JZ2SX9M", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:24:17Z", "type": "Journal Article", "created": "2023-06-29", "title": "The Plant Growth-Promoting Potential of Halotolerant Bacteria Is Not Phylogenetically Determined: Evidence from Two Bacillus megaterium Strains Isolated from Saline Soils Used to Grow Wheat", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>(1) Background: Increasing salinity, further potentiated by climate change and soil degradation, will jeopardize food security even more. Therefore, there is an urgent need for sustainable agricultural practices capable of maintaining high crop yields despite adverse conditions. Here, we tested if wheat, a salt-sensitive crop, could be a good reservoir for halotolerant bacteria with plant growth-promoting (PGP) capabilities. (2) Methods: We used two agricultural soils from Algeria, which differ in salinity but are both used to grow wheat. Soil halotolerant bacterial strains were isolated and screened for 12 PGP traits related to phytohormone production, improved nitrogen and phosphorus availability, nutrient cycling, and plant defence. The four \u2018most promising\u2019 halotolerant PGPB strains were tested hydroponically on wheat by measuring their effect on germination, survival, and biomass along a salinity gradient. (3) Results: Two halotolerant bacterial strains with PGP traits were isolated from the non-saline soil and were identified as Bacillus subtilis and Pseudomonas fluorescens, and another two halotolerant bacterial strains with PGP traits were isolated from the saline soil and identified as B. megaterium. When grown under 250 mM of NaCl, only the inoculated wheat seedlings survived. The halotolerant bacterial strain that displayed all 12 PGP traits and promoted seed germination and plant growth the most was one of the B. megaterium strains isolated from the saline soil. Although they both belonged to the B. megaterium clade and displayed a remarkable halotolerance, the two bacterial strains isolated from the saline soil differed in two PGP traits and had different effects on plant performance, which clearly shows that PGP potential is not phylogenetically determined. (4) Conclusions: Our data highlight that salt-sensitive plants and non-saline soils can be reservoirs for halotolerant microbes with the potential to become effective and sustainable strategies to improve plant tolerance to salinity. However, these strains need to be tested under field conditions and with more crops before being considered biofertilizer candidates.</p></article>", "keywords": ["2. Zero hunger", "Agriculture and Food Sciences", "PRODUCTIVITY", "DEFENSE", "QH301-705.5", "AUXIN", "15. Life on land", "plant growth promoting traits", "Article", "12. Responsible consumption", "salinity", "SALT STRESS", "NITROGEN", "halotolerant bacterial strains", "13. Climate action", "wheat", "biofertilizer", "ASSAY", "biofertilizer; halotolerant bacterial strains; plant growth promoting traits; salinity; wheat", "TOLERANCE", "Biology (General)", "ADAPTATION", "TRIGGER"]}, "links": [{"href": "http://www.mdpi.com/2076-2607/11/7/1687/pdf"}, {"href": "https://repositorio.ulisboa.pt/bitstream/10451/59751/1/Bessai%20et%20al%202023.pdf"}, {"href": "https://www.mdpi.com/2076-2607/11/7/1687/pdf"}, {"href": "https://doi.org/1854/LU-01HDKBPVW8Y8ZFTAZJ3JZ2SX9M"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microorganisms", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "1854/LU-01HDKBPVW8Y8ZFTAZJ3JZ2SX9M", "name": "item", "description": "1854/LU-01HDKBPVW8Y8ZFTAZJ3JZ2SX9M", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/1854/LU-01HDKBPVW8Y8ZFTAZJ3JZ2SX9M"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-06-28T00:00:00Z"}}, {"id": "2948324777", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:24:56Z", "type": "Journal Article", "created": "2019-06-21", "title": "Transcriptome and Metabolome Reprogramming in Tomato Plants by Trichoderma harzianum strain T22 Primes and Enhances Defense Responses Against Aphids", "description": "Beneficial fungi in the genus Trichoderma are among the most widespread biocontrol agents of plant pathogens. Their role in triggering plant defenses against pathogens has been intensely investigated, while, in contrast, very limited information is available on induced barriers active against insects. The growing experimental evidence on this latter topic looks promising, and paves the way toward the development of Trichoderma strains and/or consortia active against multiple targets. However, the predictability and reproducibility of the effects that these beneficial fungi is still somewhat limited by the lack of an in-depth understanding of the molecular mechanisms underlying the specificity of their interaction with different crop varieties, and on how the environmental factors modulate this interaction. To fill this research gap, here we studied the transcriptome changes in tomato plants (cultivar 'Dwarf San Marzano') induced by Trichoderma harzianum (strain T22) colonization and subsequent infestation by the aphid Macrosiphum euphorbiae. A wide transcriptome reprogramming, related to metabolic processes, regulation of gene expression and defense responses, was induced both by separate experimental treatments, which showed a synergistic interaction when concurrently applied. The most evident expression changes of defense genes were associated with the multitrophic interaction Trichoderma-tomato-aphid. Early and late genes involved in direct defense against insects were induced (i.e., peroxidase, GST, kinases and polyphenol oxidase, miraculin, chitinase), along with indirect defense genes, such as sesquiterpene synthase and geranylgeranyl phosphate synthase. Targeted and untargeted semi-polar metabolome analysis revealed a wide metabolome alteration showing an increased accumulation of isoprenoids in Trichoderma treated plants. The wide array of transcriptomic and metabolomics changes nicely fit with the higher mortality of aphids when feeding on Trichoderma treated plants, herein reported, and with the previously observed attractiveness of these latter toward the aphid parasitoid Aphidius ervi. Moreover, Trichoderma treated plants showed the over-expression of transcripts coding for several families of defense-related transcription factors (bZIP, MYB, NAC, AP2-ERF, WRKY), suggesting that the fungus contributes to the priming of plant responses against pest insects. Collectively, our data indicate that Trichoderma treatment of tomato plants induces transcriptomic and metabolomic changes, which underpin both direct and indirect defense responses.", "keywords": ["defence", "defense", "2. Zero hunger", "0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "aphid", "Physiology", "QP1-981", "RNA-Seq", "semi-polarmetabolome", "San Marzano", " aphid", " RNA-Seq", " semi-polarmetabolome", " defence", "San Marzano"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/753615/2/Coppola%202019a%20fphys%20Transc%20metab%20tom%20T22%20defresp%20aphids.pdf"}, {"href": "https://doi.org/2948324777"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2948324777", "name": "item", "description": "2948324777", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2948324777"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-06-21T00:00:00Z"}}, {"id": "3089242097", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:25:08Z", "type": "Journal Article", "created": "2020-09-22", "title": "Background insect herbivory increases with local elevation but makes minor contribution to element cycling along natural gradients in the Subarctic", "description": "Abstract<p>Herbivores can exert major controls over biogeochemical cycling. As invertebrates are highly sensitive to temperature shifts (ectothermal), the abundances of insects in high\uffe2\uff80\uff90latitude systems, where climate warming is rapid, is expected to increase. In subarctic mountain birch forests, research has focussed on geometrid moth outbreaks, while the contribution of background insect herbivory (BIH) to elemental cycling is poorly constrained. In northern Sweden, we estimated BIH along 9 elevational gradients distributed across a gradient in regional elevation, temperature, and precipitation to allow evaluation of consistency in local versus regional variation. We converted foliar loss via BIH to fluxes of C, nitrogen (N), and phosphorus (P) from the birch canopy to the soil to compare with other relevant soil inputs of the same elements and assessed different abiotic and biotic drivers of the observed variability. We found that leaf area loss due to BIH was ~1.6% on average. This is comparable to estimates from tundra, but considerably lower than ecosystems at lower latitudes. The C, N, and P fluxes from canopy to soil associated with BIH were 1\uffe2\uff80\uff932 orders of magnitude lower than the soil input from senesced litter and external nutrient sources such as biological N fixation, atmospheric deposition of N, and P weathering estimated from the literature. Despite the minor contribution to overall elemental cycling in subarctic birch forests, the higher quality and earlier timing of the input of herbivore deposits to soils compared to senesced litter may make this contribution disproportionally important for various ecosystem functions. BIH increased significantly with leaf N content as well as local elevation along each transect, yet showed no significant relationship with temperature or humidity, nor the commonly used temperature proxy, absolute elevation. The lack of consistency between the local and regional elevational trends calls for caution when using elevation gradients as climate proxies.</p", "keywords": ["0106 biological sciences", "OPEROPHTERA-BRUMATA", "MOTH HERBIVORY", "insect herbivory", "NUTRIENT RESORPTION", "EPIRRITA-AUTUMNATA", "PLANT DEFENSES", "space\u2010for\u2010time substitution", "carbon cycling", "01 natural sciences", "fast cycle versus slow cycle", "LITTER DECOMPOSITION", "MOUNTAIN BIRCH", "Subarctic mountain birch forest", "QH540-549.5", "Original Research", "Ekologi", "CLIMATE-CHANGE", "Ecology", "LEAF-AREA INDEX", "space-for-time substitution", "nutrient cycling", "15. Life on land", "Climate Science", "ECOSYSTEM CARBON", "13. Climate action", "Klimatvetenskap"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/ece3.6803"}, {"href": "https://doi.org/3089242097"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3089242097", "name": "item", "description": "3089242097", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3089242097"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-06-08T00:00:00Z"}}, {"id": "509ce7f5-5943-4707-b8fd-4f22a3788125", "type": "Feature", "geometry": null, "properties": {"updated": "2025-09-02T09:51:50", "type": "Dataset", "language": "de", "title": "INSPIRE-WMS Geology / Strukturgeologische \u00dcbersicht BB", "description": "Der interoperable INSPIRE-WMS ist ein Darstellungsdienst, der Daten im Annex-Schema Geologie (abgeleitet aus dem origin\u00e4ren Datensatz: Strukturgeologische \u00dcbersicht Brandenburg) bereitstellt. Er gibt einen \u00dcberblick zur Tiefengeologie und dem strukturgeologischen Bauplan Brandenburgs. Diese werden dominiert durch die NW-SE streichende intrakratonale Norddeutsche Senke, deren Basis sich im n\u00f6rdlichen und mittleren Teil des Landesterritoriums auf \u00fcber 5 000 m Tiefe absenkt und nach S\u00fcden und S\u00fcdosten heraushebt. Das Beckenzentrum setzt sich von Nordwest-Brandenburg in Richtung Unterelbe fort. Dagegen ist die jetzige s\u00fcdliche Begrenzung tektonisch bedingt. Die strukturgeologischen Verh\u00e4ltnisse werden durch die jetzige Tiefenlage der Zechsteinbasis und die strukturelle Modulierung der Zechsteinoberfl\u00e4che wiedergegeben. Gem\u00e4\u00df der INSPIRE-Datenspezifikation Geology (D2.8.II.4_v3.2.0) liegen die Inhalte der Karte INSPIRE-konform vor. Der WMS beinhaltet die folgenden Layer:     - geologische Einheiten (GE.GeologicUnit) mit Angaben zur petrographischen Bezeichnung (GE.GeologicUnit.Lithology) und Art der geologischen Einheit (GE.GeologicUnit.geologicUnitType)     - geologische St\u00f6rungen (GE.GeologicFault) mit Angaben zur Verwerfungsart (faultType).     ---      The compliant INSPIRE-WMS  Geology / Strukturgeologische \u00dcbersicht Brandenburg is a view service that delivers data in the annex schema Geology (derived from the original data set: Structural geology overview Brandenburg). It provides an overview of the deep geology and geostructural setting of Brandenburg. These are dominated by the NW-SE striking intracratonic North German depression, the base of which sinks to a depth of over 5,000 m in the northern and central part of the state territory and rises to the south and southeast. The basin center continues from northwest Brandenburg towards the Lower Elbe. In contrast, the current southern boundary is caused tectonically. The structural geological conditions are reflected by the current depth of the Zechstein base and the structural modulation of the Zechstein surface. The content of the map is compliant to the INSPIRE data specification for the annex theme Geology (D2.8.II.4_v3.2.0). The WMS includes the following layer:     - geological units (GE.GeologicUnit) with information on the petrographic name (GE.GeologicUnit.Lithology) and  the type of geological unit (GE.GeologicUnit.GeologicUnitType),     - geological faults (GE.GeologicFault) with information on the fault type (faultType).", "formats": [{"name": "HTML"}], "keywords": ["bboxbebb", "boden", "bodenart", "bodenkunde", "brandenburg", "de", "geologiccollection", "geologicunit", "geologie", "geologycore", "infomapaccessservice", "inspireidentifiziert", "interoperabel", "interoperability", "mappedfeature", "opendata", "salinar", "salzkissen", "salzstock", "senken", "sheardisplacementstructure", "sto\u0308rung", "tektonik", "tiefengeologie", "tiefensto\u0308rung", "wms", "zechstein"], "contacts": [{"organization": "Landesamt f\u00fcr Bergbau, Geologie und Rohstoffe Brandenburg (LBGR)", "roles": ["creator"]}]}, "links": [{"href": "https://geoportal.brandenburg.de/detailansichtdienst/render?view=gdibb&url=https%3A%2F%2Fgeoportal.brandenburg.de%2Fgs-json%2Fxml%3Ffileid%3D509ce7f5-5943-4707-b8fd-4f22a3788125"}, {"href": "https://inspire.brandenburg.de/services/ge-core_salinar_wms?REQUEST=GetCapabilities&SERVICE=WMS"}, {"href": "http://data.europa.eu/88u/dataset/509ce7f5-5943-4707-b8fd-4f22a3788125~~1"}, {"rel": "self", "type": "application/geo+json", "title": "509ce7f5-5943-4707-b8fd-4f22a3788125", "name": "item", "description": "509ce7f5-5943-4707-b8fd-4f22a3788125", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/509ce7f5-5943-4707-b8fd-4f22a3788125"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"null": "date"}}, {"id": "5efa7ee2-8cf1-416c-bcce-a3b2ef178e21", "type": "Feature", "geometry": null, "properties": {"updated": "2025-09-02T09:55:30", "type": "Dataset", "language": "de", "title": "INSPIRE-WFS Geology / Strukturgeologische \u00dcbersicht BB", "description": "Der interoperable INSPIRE-WFS ist ein Downloaddienst, der Daten im Annex-Schema Geologie (abgeleitet aus dem origin\u00e4ren Datensatz: Strukturgeologische \u00dcbersicht Brandenburg) bereitstellt. Er gibt einen \u00dcberblick zur Tiefengeologie und dem strukturgeologischen Bauplan Brandenburgs. Diese werden dominiert durch die NW-SE streichende intrakratonale Norddeutsche Senke, deren Basis sich im n\u00f6rdlichen und mittleren Teil des Landesterritoriums auf \u00fcber 5 000 m Tiefe absenkt und nach S\u00fcden und S\u00fcdosten heraushebt. Das Beckenzentrum setzt sich von Nordwest-Brandenburg in Richtung Unterelbe fort. Dagegen ist die jetzige s\u00fcdliche Begrenzung tektonisch bedingt. Die strukturgeologischen Verh\u00e4ltnisse werden durch die jetzige Tiefenlage der Zechsteinbasis und die strukturelle Modulierung der Zechsteinoberfl\u00e4che wiedergegeben. Gem\u00e4\u00df der INSPIRE-Datenspezifikation Geology (D2.8.II.4_v3.2.0) liegen die Inhalte der Karte INSPIRE-konform vor. Der WFS beinhaltet die folgenden FeatureTypes:      - Geologische Einheiten (ge:GeologicUnits) mit Angaben zur petrographischen Bezeichnung und Art der geologischen Einheit (geologicUnitType),            - Verwerfungen (ge:ShearDisplacementStructure) mit Angaben zur  Art der Verwerfung (faultType),     - Charakteristika des kartierten Merkmals (ge:MappedFeature) und     - Art der geologische Sammlung (ge:GeologicCollection).     ---       The compliant INSPIRE-WFS  Geology / Strukturgeologische \u00dcbersicht Brandenburg is a download service that delivers data in the annex schema Geology (derived from the original data set: Structural geology overview Brandenburg). It provides an overview of the deep geology and geostructural setting of Brandenburg. These are dominated by the NW-SE striking intracratonic North German depression, the base of which sinks to a depth of over 5,000 m in the northern and central part of the state territory and rises to the south and southeast. The basin center continues from northwest Brandenburg towards the Lower Elbe. In contrast, the current southern boundary is caused tectonically. The structural geological conditions are reflected by the current depth of the Zechstein base and the structural modulation of the Zechstein surface. The content of the map is compliant to the INSPIRE data specification for the annex theme Geology (D2.8.II.4_v3.2.0). The WFS includes the following feature types:     - geological features (ge:GeologicUnits) with information on the petrographic name and the type of geological unit (geologicUnitType),              - shear displacement structures (ge:ShearDisplacementStructure) with information on the fault type (faultType),     - characteristics of the mapped feature (ge:MappedFeature) and     - type of the geological collection (ge:GeologicCollection).", "formats": [{"name": "HTML"}], "keywords": ["bboxbebb", "boden", "bodenart", "bodenkunde", "brandenburg", "de", "geologiccollection", "geologicunit", "geologie", "geologycore", "infofeatureaccessservice", "inspireidentifiziert", "interoperabel", "interoperability", "mappedfeature", "opendata", "salinar", "salzkissen", "salzstock", "senken", "sheardisplacementstructure", "sto\u0308rung", "tektonik", "tiefengeologie", "tiefensto\u0308rung", "wfs", "zechstein"], "contacts": [{"organization": "Landesamt f\u00fcr Bergbau, Geologie und Rohstoffe Brandenburg (LBGR)", "roles": ["creator"]}]}, "links": [{"href": "https://geoportal.brandenburg.de/detailansichtdienst/render?view=gdibb&url=https%3A%2F%2Fgeoportal.brandenburg.de%2Fgs-json%2Fxml%3Ffileid%3D5efa7ee2-8cf1-416c-bcce-a3b2ef178e21"}, {"href": "https://inspire.brandenburg.de/services/ge-core_salinar_wfs?REQUEST=GetCapabilities&SERVICE=WFS"}, {"href": "https://isk.geobasis-bb.de/geodienste/Sonstiges/Hilfe_Nutzung_Downloaddienst.pdf"}, {"href": "http://data.europa.eu/88u/dataset/5efa7ee2-8cf1-416c-bcce-a3b2ef178e21~~1"}, {"rel": "self", "type": "application/geo+json", "title": "5efa7ee2-8cf1-416c-bcce-a3b2ef178e21", "name": "item", "description": "5efa7ee2-8cf1-416c-bcce-a3b2ef178e21", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/5efa7ee2-8cf1-416c-bcce-a3b2ef178e21"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"null": "date"}}, {"id": "64491c23-9620-46e6-9136-6167c78f3cc8", "type": "Feature", "geometry": null, "properties": {"updated": "2025-09-02T10:09:07", "type": "Dataset", "language": "de", "title": "INSPIRE Geology / Structural Geological Survey BB", "description": "The interoperable INSPIRE dataset contains data from the LBGR on the structural geological survey Brandenburg, transformed into the INSPIRE target scheme geology. The dataset is provided via an interoperable display and download service. --- The compliant INSPIRE data set contains data about the deep geology and geostructural setting of Brandenburg, transformed into the INSPIRE annex schema Geology. The data set is provided via compliant view and download services.", "formats": [{"name": "WFS_SRVC"}], "keywords": ["High value dataset", "bboxbebb", "boden", "bodenart", "bodenkunde", "brandenburg", "de", "erdbeobachtung-und-umwelt", "geologiccollection", "geologicunit", "geologie", "geologycore", "inspireidentifiziert", "interoperabel", "interoperability", "interoperable-daten", "mappedfeature", "opendata", "salinar", "salzkissen", "salzstock", "senken", "sheardisplacementstructure", "sto\u0308rung", "surfacegeology", "tektonik", "tiefengeologie", "tiefensto\u0308rung", "zechstein"], "contacts": [{"organization": "Landesamt f\u00fcr Bergbau, Geologie und Rohstoffe Brandenburg (LBGR)", "roles": ["creator"]}]}, "links": [{"href": "https://inspire.brandenburg.de/services/ge-core_salinar_wfs?REQUEST=GetCapabilities&SERVICE=WFS"}, {"href": "https://inspire.brandenburg.de/services/ge-core_salinar_wms?REQUEST=GetCapabilities&SERVICE=WMS"}, {"href": "https://inspire.brandenburg.de/services/salinar_wfs?REQUEST=GetCapabilities&SERVICE=WFS"}, {"href": "http://data.europa.eu/88u/dataset/64491c23-9620-46e6-9136-6167c78f3cc8~~1"}, {"rel": "self", "type": "application/geo+json", "title": "64491c23-9620-46e6-9136-6167c78f3cc8", "name": "item", "description": "64491c23-9620-46e6-9136-6167c78f3cc8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/64491c23-9620-46e6-9136-6167c78f3cc8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"null": "date"}}, {"id": "PMC10725457", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:27:05Z", "type": "Journal Article", "created": "2023-12-16", "title": "Polystyrene nanoparticles induce concerted response of plant defense mechanisms in plant cells", "description": "Abstract<p>Recent advances in knowledge suggest that micro- and nanoplastics pose a threat to plant health, however, the responses of plants to this stressor are not well-known. Here we examined the response of plant cell defence mechanisms to nanoparticles of commonly used plastic, polystyrene. We used plant cell cultures of widely cultivated plants, the monocots wheat and barley (Triticum aestivum L., Hordeum vulgare L.) and the dicots carrot and tomato (Daucus carota L., Solanum lycopersicum L.). We measured the activities of enzymes involved in the scavenging of reactive oxygen species and nonenzymatic antioxidants and we estimated potential damages in plant cell structures and functioning via lipid peroxidation and DNA methylation levels. Our results demonstrate that the mode of action of polystyrene nanoparticles on plant cells involves oxidative stress. However, the changes in plant defence mechanisms are dependent on plant species, exposure time and nanoplastic concentrations. In general, both monocots showed similar responses to nanoplastics, but the carrot followed more the response of monocots than a second dicot, a tomato. Higher H2O2, lipid peroxidation and lower enzyme activities scavenging H2O2 suggest that tomato cells may be more susceptible to polystyrene-induced stress. In conclusion, polystyrene nanoplastics induce oxidative stress and the response of the plant defense mechanisms involving several chain reactions leading to oxidoreductive homeostasis.</p", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Science", "Microplastics", "Q", "R", "Hydrogen Peroxide", "Plants", "15. Life on land", "Article", "Antioxidants", "03 medical and health sciences", "Plant Cells", "Medicine", "Polystyrenes", "Nanoparticles", "Defense Mechanisms"]}, "links": [{"href": "https://www.nature.com/articles/s41598-023-50104-5.pdf"}, {"href": "https://doi.org/PMC10725457"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Scientific%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC10725457", "name": "item", "description": "PMC10725457", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC10725457"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-16T00:00:00Z"}}, {"id": "PMC9574658", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-24T16:27:14Z", "type": "Journal Article", "created": "2021-10-26", "title": "Development of Inapparent Dengue Associated With Increased Antibody Levels to Aedes aegypti Salivary Proteins: A Longitudinal Dengue Cohort in Cambodia", "description": "Abstract                                   Background                   <p>We established the first prospective cohort to understand how infection with dengue virus is influenced by vector-specific determinants such as humoral immunity to Aedes aegypti salivary proteins.</p>                                                   Methods                   <p>Children aged 2\uffe2\uff80\uff939 years were enrolled in the PAGODAS (Pediatric Assessment Group of Dengue and Aedes Saliva) cohort with informed consent by their guardians. Children were followed semi-annually for antibodies to dengue and to proteins in Ae. aegypti salivary gland homogenate using enzyme-linked immunosorbent assays and dengue-specific neutralization titers. Children presented with fever at any time for dengue testing.</p>                                                   Results                   <p>From 13 July to 30 August 2018, we enrolled 771 children. At baseline, 22% (173/770) had evidence of neutralizing antibodies to 1 or more dengue serotypes. By April 2020, 51 children had symptomatic dengue while 148 dengue-naive children had inapparent dengue defined by neutralization assays. In a multivariate model, individuals with higher antibodies to Ae. aegypti salivary proteins were 1.5 times more likely to have dengue infection (hazard ratio [HR], 1.47 [95% confidence interval {CI}, 1.05\uffe2\uff80\uff932.06]; P\uffe2\uff80\uff85=\uffe2\uff80\uff85.02), particularly individuals with inapparent dengue (HR, 1.64 [95% CI, 1.12\uffe2\uff80\uff932.41]; P\uffe2\uff80\uff85=\uffe2\uff80\uff85.01).</p>                                                   Conclusions                   <p>High levels of seropositivity to Ae. aegypti salivary proteins are associated with future development of dengue infection, primarily inapparent, in dengue-naive Cambodian children.</p>                                                   Clinical Trials Registration                   <p>NCT03534245</p>", "keywords": ["0301 basic medicine", "Mosquito Vectors", "Medical and Health Sciences", "Microbiology", "Antibodies", "Vaccine Related", "Dengue", "03 medical and health sciences", "Rare Diseases", "Aedes aegypti", "Clinical Research", "Aedes", "Biodefense", "pediatric cohort", "Animals", "Humans", "mosquito saliva", "Prospective Studies", "Salivary Proteins and Peptides", "Child", "Neutralizing", "0303 health sciences", "Prevention", "Biological Sciences", "Dengue Virus", "dengue", "Antibodies", " Neutralizing", "3. Good health", "Vector-Borne Diseases", "Infectious Diseases", "Emerging Infectious Diseases", "Good Health and Well Being", "Infection", "Cambodia", "Biotechnology"]}, "links": [{"href": "https://doi.org/PMC9574658"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Journal%20of%20Infectious%20Diseases", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC9574658", "name": "item", "description": "PMC9574658", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC9574658"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-27T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=FENS&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=FENS&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=FENS&", "hreflang": "en-US"}, {"rel": "last", "type": "application/geo+json", "title": "items (last)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=FENS&offset=25", "hreflang": "en-US"}], "numberMatched": 25, "numberReturned": 25, "distributedFeatures": [], "timeStamp": "2026-05-25T00:05:49.951005Z"}