{"type": "FeatureCollection", "features": [{"id": "10.1016/j.agee.2024.109035", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-20T16:15:05Z", "type": "Journal Article", "created": "2024-05-04", "title": "Soil and climatic characteristics and farming system shape fungal communities in European wheat fields", "description": "Fungi play a pivotal role as highly effective decomposers of plant residues and essential mycorrhizal symbionts,\u00a0augmenting water and nutrient uptake in plants and contributing to diverse functions within agroecosystems.\u00a0This study examined soil fungi in 188 wheat fields across nine European pedoclimatic zones under both conventional\u00a0and organic farming systems, utilizing ITS1 amplicon sequencing. The investigation aimed to quantify\u00a0changes induced by the farming system in soil fungi and their correlation with soil features and climatic factors\u00a0across these pedoclimatic zones, spanning from northern to southern Europe. The pedoclimatic zone emerged as\u00a0a key determinant in shaping the overall composition of the fungal community. Zones characterized by moist and\u00a0cool climates, along with low levels of available phosphorus and carbonate, exhibited higher fungal richness.\u00a0However, variations in fungal diversity and relative abundances were observed within zones due to farming\u00a0system-induced changes. Soil pH and bulk density were identified as major factors, for example, they correlate\u00a0with an increase in potential pathogenic taxa (Mycosphaerella, Nectriaceae, Alternaria) in two Mediterranean\u00a0zones and with an increase of potential plant growth promoting taxa (Saitozyma, Solicoccozyma) in the Boreal\u00a0zone. Organic farming, in general, promoted elevated fungal richness. The Lusitanian and Nemoral zones under\u00a0organic farming exhibited the highest fungal richness and diversity. In terms of organic farming, both symbiotrophs\u00a0and potential pathogens increased in the Lusitanian zone, while pathotrophs were more prevalent in the\u00a0Central Atlantic and South Mediterranean zones under organic farming. These findings propose potential indicators\u00a0for organic farming, including fungal endophytes in zones characterized by a moist and cool climate, low\u00a0available phosphorus content, and low soil pH. Organic farming may favor mycorrhizae and potential pathogens\u00a0in zones with drier and warmer climates, along with higher soil pH, calcium carbonate content, and bulk density.\u00a0This study provides novel insights and underscores the significance of regional climatic and edaphic conditions in\u00a0shaping the soil fungal community in different farming systems within European wheat fields.  This work was funded by the European Commission Horizon 2020 project SoildiverAgro [grant agreement 817819].", "keywords": ["2. Zero hunger", "570", "Organic farming", "15. Life on land", "630", "conventional farming", "wheat field", "Conventional farming", "organic farming", "Agricultural soils", "farming system", "fungi", "Fungal diversity"]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2024.109035"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2024.109035", "name": "item", "description": "10.1016/j.agee.2024.109035", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2024.109035"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-01T00:00:00Z"}}, {"id": "10.1111/j.1461-0248.2006.00965.x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-20T16:17:39Z", "type": "Journal Article", "created": "2006-09-12", "title": "Resource Availability Controls Fungal Diversity Across A Plant Diversity Gradient", "description": "Abstract<p>Despite decades of research, the ecological determinants of microbial diversity remain poorly understood. Here, we test two alternative hypotheses concerning the factors regulating fungal diversity in soil. The first states that higher levels of plant detritus production increase the supply of limiting resources (i.e. organic substrates) thereby increasing fungal diversity. Alternatively, greater plant diversity increases the range of organic substrates entering soil, thereby increasing the number of niches to be filled by a greater array of heterotrophic fungi. These two hypotheses were simultaneously examined in experimental plant communities consisting of one to 16 species that have been maintained for a decade. We used ribosomal intergenic spacer analysis (RISA), in combination with cloning and sequencing, to quantify fungal community composition and diversity within the experimental plant communities. We used soil microbial biomass as a temporally integrated measure of resource supply. Plant diversity was unrelated to fungal diversity, but fungal diversity was a unimodal function of resource supply. Canonical correspondence analysis (CCA) indicated that plant diversity showed a relationship to fungal community composition, although the occurrence of RISA bands and operational taxonomic units (OTUs) did not differ among the treatments. The relationship between fungal diversity and resource availability parallels similar relationships reported for grasslands, tropical forests, coral reefs, and other biotic communities, strongly suggesting that the same underlying mechanisms determine the diversity of organisms at multiple scales.</p>", "keywords": ["0301 basic medicine", "Plant Diversity", "0303 health sciences", "Science", "Ecology and Evolutionary Biology", "Fungi", "Biodiversity", "15. Life on land", "Plants", "Cedar Creek Natural History Area", "Fungal Diversity", "Microbial Biomass", "03 medical and health sciences", "Resource Availability", "Diversity-productivity Hypothesis", "Soil Microbiology", "Microbial Diversity"]}, "links": [{"href": "https://doi.org/10.1111/j.1461-0248.2006.00965.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1461-0248.2006.00965.x", "name": "item", "description": "10.1111/j.1461-0248.2006.00965.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1461-0248.2006.00965.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-09-12T00:00:00Z"}}, {"id": "10.1126/sciadv.adj8016", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-20T16:17:50Z", "type": "Journal Article", "created": "2023-11-29", "title": "Connecting the multiple dimensions of global soil fungal diversity", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering the management of this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate the distributions and drivers of different levels of taxonomic and phylogenetic diversity of fungi and their ecological groups. We show the impact of precipitation and temperature interactions on local fungal species richness (alpha diversity) across different climates. Our findings reveal how temperature drives fungal compositional turnover (beta diversity) and phylogenetic diversity, linking them with regional species richness (gamma diversity). We integrate fungi into the principles of global biodiversity distribution and present detailed maps for biodiversity conservation and modeling of global ecological processes.</p></article>", "keywords": ["Supplementary Data", "biodiversity", " fungi", " ecology", "QH301 Biology", "Diversity (politics)", "Plant Science", "Biodiversity conservation", "Fungal Diversity", "Agricultural and Biological Sciences", "Soil", "Life", "Sociology", "WATER", "Global biodiversity distribution", "Fungal diversity", "Phylogeny", "Soil Microbiology", "2. Zero hunger", "Multidisciplinary", "Earth", " Environmental", " Ecological", " and Space Sciences", "Geography", "Ecology", "soil fungal diversity", "4. Education", "SPECIES RICHNESS", "Life Sciences", "https://www.science.org/doi/suppl/10.1126/sciadv.adj8016/suppl_file/sciadv.adj8016_sm.pdf", "Biodiversity", "FOS: Sociology", "global biodiversity distribution", "sienet", "https://www.science.org/doi/suppl/10.1126/sciadv.adj8016/suppl_file/sciadv.adj8016_tables_s1_to_s13.zip", "Diversity and Evolution of Fungal Pathogens", "570", "Supplementary Information", "DNA markers", "QH301", "Sequencing high-resolution DNA", "Biochemistry", " Genetics and Molecular Biology", "monimuotoisuus", "Mycorrhizal Fungi and Plant Interactions", "Life Science", "Humans", "14. Life underwater", "General", "Global ecological processes", "Biology", "Ecosystem", "Ecology", " Evolution", " Behavior and Systematics", "global ecological processes", "Soil fungal diversity", "microbiology", "Fungi", "Water", "Cell Biology", "15. Life on land", "luonnon monimuotoisuus", "Agronomy", "biodiversiteetti", "LIFE", "ekosysteemit (ekologia)", "Evolution and Ecology of Endophyte-Grass Symbiosis", "13. Climate action", "Ecology", " evolutionary biology", "Earth and Environmental Sciences", "FOS: Biological sciences", "Anthropology", "ta1181", "biodiversity conservation", "Species richness"]}, "links": [{"href": "https://www.science.org/doi/epdf/10.1126/sciadv.adj8016"}, {"href": "https://www.science.org/doi/pdf/10.1126/sciadv.adj8016"}, {"href": "https://doi.org/10.1126/sciadv.adj8016"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20Advances", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1126/sciadv.adj8016", "name": "item", "description": "10.1126/sciadv.adj8016", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1126/sciadv.adj8016"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-01T00:00:00Z"}}, {"id": "10.1371/journal.pone.0034887", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-20T16:18:03Z", "type": "Journal Article", "created": "2012-04-19", "title": "Changes In The Diversity Of Soil Arbuscular Mycorrhizal Fungi After Cultivation For Biofuel Production In A Guantanamo (Cuba) Tropical System", "description": "Open AccessLes champignons mycorhiziens arbusculaires (FMA) sont un \u00e9l\u00e9ment cl\u00e9 et int\u00e9gral de la stabilit\u00e9, de la durabilit\u00e9 et du fonctionnement des \u00e9cosyst\u00e8mes. Dans cette \u00e9tude, nous avons caract\u00e9ris\u00e9 la biodiversit\u00e9 de l'AMF dans un sol v\u00e9g\u00e9tal natif et dans un sol cultiv\u00e9 avec Jatropha curcas ou Ricinus communis, dans un syst\u00e8me tropical \u00e0 Guantanamo (Cuba), afin de v\u00e9rifier si un changement d'utilisation des terres pour la production de plantes biocarburants a eu un effet sur les communaut\u00e9s de l'AMF. Nous \u00e9valuons \u00e9galement si certaines propri\u00e9t\u00e9s du sol li\u00e9es \u00e0 la fertilit\u00e9 du sol (N total, C organique, biomasse microbienne C, pourcentage de stabilit\u00e9 globale, pH et conductivit\u00e9 \u00e9lectrique) ont \u00e9t\u00e9 modifi\u00e9es avec la culture des deux esp\u00e8ces de cultures. Les g\u00e8nes d'ARNr de la petite sous-unit\u00e9 fongique AM (SSU) ont \u00e9t\u00e9 soumis \u00e0 une PCR, \u00e0 un clonage, \u00e0 un s\u00e9quen\u00e7age et \u00e0 des analyses phylog\u00e9n\u00e9tiques. Vingt types de s\u00e9quences fongiques AM ont \u00e9t\u00e9 identifi\u00e9s\u00a0: 19 appartiennent aux Glomeraceae et un aux Paraglomeraceae. Deux types de s\u00e9quences d'AMF li\u00e9s \u00e0 des esp\u00e8ces d'AMF cultiv\u00e9es (Glo G3 pour Glomus sinuosum et Glo G6 pour Glomus intraradices-G. fasciculatum-G. irregulare) ne se sont pas produits dans le sol cultiv\u00e9 avec J. curcas et R. communis. Les propri\u00e9t\u00e9s du sol (N total, C organique et biomasse microbienne C) \u00e9taient plus \u00e9lev\u00e9es dans le sol cultiv\u00e9 avec les deux esp\u00e8ces v\u00e9g\u00e9tales. La diversit\u00e9 de la communaut\u00e9 AMF a diminu\u00e9 dans le sol des deux cultures, par rapport au sol v\u00e9g\u00e9tal indig\u00e8ne, et variait consid\u00e9rablement en fonction des esp\u00e8ces cultiv\u00e9es plant\u00e9es. Ainsi, le sol de R. communis pr\u00e9sentait une diversit\u00e9 AMF plus \u00e9lev\u00e9e que le sol de J. curcas. En conclusion, R. communis pourrait \u00eatre plus adapt\u00e9 \u00e0 la conservation \u00e0 long terme et \u00e0 la gestion durable de ces \u00e9cosyst\u00e8mes tropicaux.", "keywords": ["Biomass (ecology)", "Jatropha", "Plant Science", "Plant Roots", "7. Clean energy", "Fungal Diversity", "Agricultural and Biological Sciences", "Soil", "Mycorrhizae", "Jatropha curcas", "Soil water", "Saproxylic Insect Ecology and Forest Management", "Mycological Typing Techniques", "Phylogeny", "Soil Microbiology", "2. Zero hunger", "Ecology", "Q", "R", "Cuba", "Life Sciences", "Agriculture", "Biodiversity", "04 agricultural and veterinary sciences", "Hydrogen-Ion Concentration", "Medicine", "Research Article", "Science", "Soil fertility", "12. Responsible consumption", "Mycorrhizal Fungi and Plant Interactions", "Health Sciences", "Biology", "Ecosystem", "Ribosome Subunits", " Small", " Eukaryotic", "Pharmacology", "Tropical Climate", "Soil organic matter", "Electric Conductivity", "Botany", "Medicinal Mushrooms: Antitumor and Immunomodulating Properties", "Spore", "15. Life on land", "Agronomy", "Glomus", "Molecular Typing", "Biofuels", "Insect Science", "FOS: Biological sciences", "0401 agriculture", " forestry", " and fisheries", "Ricinus communis"]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0034887"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0034887", "name": "item", "description": "10.1371/journal.pone.0034887", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0034887"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-04-19T00:00:00Z"}}, {"id": "10.3390/agronomy10101535", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-20T16:19:01Z", "type": "Journal Article", "created": "2020-10-09", "title": "Temporal and Cultivar-Specific Effects on Potato Root and Soil Fungal Diversity", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The soil fungal community plays an important role in determining plant growth and health. In this study, we investigated the fungal diversity and community composition in the roots and soil of 21 potato (Solanum tuberosum L.) cultivars using high-throughput sequencing at three different time points across the growing season. In soil and roots, the fungal richness and relative abundance of pathogens and saprotrophs were mainly affected by sampling time. While sampling time affected fungal composition in soil, root fungal communities were also significantly affected by cultivar. The cultivar had the strongest effect on diversity of pathogens and abundance of particular pathogen species. Our results demonstrate changes in soil and root fungal communities of potato over the growing season, as well as highlighting the importance of potato cultivar on root fungal communities and abundance of pathogens.</p></article>", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "agroecosystems", "S", "high-throughput sequencing", "fungal guild", "<i>Solanum tuberosum</i>", "Agriculture", "15. Life on land", "fungal diversity", "03 medical and health sciences", "potato cultivars", "host specificity", "Solanum tuberosum"]}, "links": [{"href": "http://www.mdpi.com/2073-4395/10/10/1535/pdf"}, {"href": "https://www.mdpi.com/2073-4395/10/10/1535/pdf"}, {"href": "https://doi.org/10.3390/agronomy10101535"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/agronomy10101535", "name": "item", "description": "10.3390/agronomy10101535", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/agronomy10101535"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-09T00:00:00Z"}}, {"id": "10.3390/agronomy11030410", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-20T16:19:01Z", "type": "Journal Article", "created": "2021-02-24", "title": "Mycobiome Composition and Diversity under the Long-Term Application of Spent Mushroom Substrate and Chicken Manure", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Waste exogenous organic matter, including spent mushroom substrate (SMS) and chicken manure (CM), can be used as the basis of a soil-improving cropping system in sustainable agriculture. However, there is\u2014as yet\u2014a lack of information about important quality indicators such as the fungal community relative abundance, structure and biodiversity in soils treated with these additives. In this study, the responses of the soil fungal community composition and mycobiome diversity to SMS and CM application compared to the control soil were evaluated using a combination of the following molecular approaches: quantitative polymerase chain reactions, denaturing gradient gel electrophoresis, terminal restriction fragment length polymorphism, and next-generation sequencing. The most abundant phylum for both treatments was Ascomycota, followed by Basidiomycota. The application of SMS and CM increased the abundance of fungi, including Tremellomycetes and Pezizomycetes for the SMS additive, while the Mortierellomycetes, Pezizomycetes, and Leotiomycetes levels increased after CM addition. SMS and CM beneficially reduced the relative abundance of several operational taxonomic units (OTUs) which are potential crop pathogens. The results provide a novel insight into the fungal community associated with organic additives, which should be beneficial in the task of managing the soil mycobiome as well as crop protection and productivity.</p></article>", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "soil fungal diversity", "S", "phytopathogens", "microbiome", "Agriculture", "15. Life on land", "exogenous organic additives", "6. Clean water", "fungal fingerprinting", "03 medical and health sciences", "mycobiota"]}, "links": [{"href": "http://www.mdpi.com/2073-4395/11/3/410/pdf"}, {"href": "https://www.mdpi.com/2073-4395/11/3/410/pdf"}, {"href": "https://doi.org/10.3390/agronomy11030410"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/agronomy11030410", "name": "item", "description": "10.3390/agronomy11030410", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/agronomy11030410"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-24T00:00:00Z"}}, {"id": "10.5281/zenodo.4476976", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-20T16:20:46Z", "type": "Journal Article", "created": "2020-10-09", "title": "Temporal and Cultivar-Specific Effects on Potato Root and Soil Fungal Diversity", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The soil fungal community plays an important role in determining plant growth and health. In this study, we investigated the fungal diversity and community composition in the roots and soil of 21 potato (Solanum tuberosum L.) cultivars using high-throughput sequencing at three different time points across the growing season. In soil and roots, the fungal richness and relative abundance of pathogens and saprotrophs were mainly affected by sampling time. While sampling time affected fungal composition in soil, root fungal communities were also significantly affected by cultivar. The cultivar had the strongest effect on diversity of pathogens and abundance of particular pathogen species. Our results demonstrate changes in soil and root fungal communities of potato over the growing season, as well as highlighting the importance of potato cultivar on root fungal communities and abundance of pathogens.</p></article>", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "agroecosystems", "S", "high-throughput sequencing", "fungal guild", "<i>Solanum tuberosum</i>", "Agriculture", "15. Life on land", "fungal diversity", "03 medical and health sciences", "potato cultivars", "host specificity", "Solanum tuberosum"]}, "links": [{"href": "http://www.mdpi.com/2073-4395/10/10/1535/pdf"}, {"href": "https://www.mdpi.com/2073-4395/10/10/1535/pdf"}, {"href": "https://doi.org/10.5281/zenodo.4476976"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.5281/zenodo.4476976", "name": "item", "description": "10.5281/zenodo.4476976", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5281/zenodo.4476976"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-09T00:00:00Z"}}, {"id": "2164/23373", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-20T16:22:24Z", "type": "Journal Article", "created": "2023-11-29", "title": "Connecting the multiple dimensions of global soil fungal diversity", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering the management of this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate the distributions and drivers of different levels of taxonomic and phylogenetic diversity of fungi and their ecological groups. We show the impact of precipitation and temperature interactions on local fungal species richness (alpha diversity) across different climates. Our findings reveal how temperature drives fungal compositional turnover (beta diversity) and phylogenetic diversity, linking them with regional species richness (gamma diversity). We integrate fungi into the principles of global biodiversity distribution and present detailed maps for biodiversity conservation and modeling of global ecological processes.</p></article>", "keywords": ["Supplementary Data", "QH301 Biology", "Diversity (politics)", "Plant Science", "Biodiversity conservation", "Fungal Diversity", "Agricultural and Biological Sciences", "Soil", "Life", "Sociology", "WATER", "Global biodiversity distribution", "Fungal diversity", "Phylogeny", "Soil Microbiology", "2. Zero hunger", "Multidisciplinary", "Earth", " Environmental", " Ecological", " and Space Sciences", "Geography", "Ecology", "soil fungal diversity", "4. Education", "SPECIES RICHNESS", "Life Sciences", "https://www.science.org/doi/suppl/10.1126/sciadv.adj8016/suppl_file/sciadv.adj8016_sm.pdf", "Biodiversity", "FOS: Sociology", "global biodiversity distribution", "sienet", "https://www.science.org/doi/suppl/10.1126/sciadv.adj8016/suppl_file/sciadv.adj8016_tables_s1_to_s13.zip", "Diversity and Evolution of Fungal Pathogens", "570", "Supplementary Information", "DNA markers", "QH301", "Sequencing high-resolution DNA", "Biochemistry", " Genetics and Molecular Biology", "monimuotoisuus", "Mycorrhizal Fungi and Plant Interactions", "Life Science", "Humans", "14. Life underwater", "General", "Global ecological processes", "Biology", "Ecosystem", "Ecology", " Evolution", " Behavior and Systematics", "global ecological processes", "Soil fungal diversity", "microbiology", "Fungi", "Water", "Cell Biology", "15. Life on land", "luonnon monimuotoisuus", "Agronomy", "biodiversiteetti", "LIFE", "ekosysteemit (ekologia)", "Evolution and Ecology of Endophyte-Grass Symbiosis", "13. Climate action", "Ecology", " evolutionary biology", "Earth and Environmental Sciences", "FOS: Biological sciences", "Anthropology", "ta1181", "biodiversity conservation", "CBCE", "Species richness"]}, "links": [{"href": "https://www.science.org/doi/epdf/10.1126/sciadv.adj8016"}, {"href": "https://iris.unica.it/bitstream/11584/447894/1/Mikryukov%20et%20al_Science%20Advances%202023.pdf"}, {"href": "https://www.science.org/doi/pdf/10.1126/sciadv.adj8016"}, {"href": "https://doi.org/2164/23373"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20Advances", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2164/23373", "name": "item", "description": "2164/23373", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2164/23373"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-01T00:00:00Z"}}, {"id": "3132814372", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-20T16:22:48Z", "type": "Journal Article", "created": "2021-02-25", "title": "Mycobiome Composition and Diversity under the Long-Term Application of Spent Mushroom Substrate and Chicken Manure", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Waste exogenous organic matter, including spent mushroom substrate (SMS) and chicken manure (CM), can be used as the basis of a soil-improving cropping system in sustainable agriculture. However, there is\u2014as yet\u2014a lack of information about important quality indicators such as the fungal community relative abundance, structure and biodiversity in soils treated with these additives. In this study, the responses of the soil fungal community composition and mycobiome diversity to SMS and CM application compared to the control soil were evaluated using a combination of the following molecular approaches: quantitative polymerase chain reactions, denaturing gradient gel electrophoresis, terminal restriction fragment length polymorphism, and next-generation sequencing. The most abundant phylum for both treatments was Ascomycota, followed by Basidiomycota. The application of SMS and CM increased the abundance of fungi, including Tremellomycetes and Pezizomycetes for the SMS additive, while the Mortierellomycetes, Pezizomycetes, and Leotiomycetes levels increased after CM addition. SMS and CM beneficially reduced the relative abundance of several operational taxonomic units (OTUs) which are potential crop pathogens. The results provide a novel insight into the fungal community associated with organic additives, which should be beneficial in the task of managing the soil mycobiome as well as crop protection and productivity.</p></article>", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "soil fungal diversity", "S", "phytopathogens", "microbiome", "Agriculture", "15. Life on land", "exogenous organic additives", "6. Clean water", "fungal fingerprinting", "03 medical and health sciences", "mycobiota"]}, "links": [{"href": "http://www.mdpi.com/2073-4395/11/3/410/pdf"}, {"href": "https://www.mdpi.com/2073-4395/11/3/410/pdf"}, {"href": "https://doi.org/3132814372"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3132814372", "name": "item", "description": "3132814372", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3132814372"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-24T00:00:00Z"}}, {"id": "3091904565", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-20T16:22:45Z", "type": "Journal Article", "created": "2020-10-09", "title": "Temporal and Cultivar-Specific Effects on Potato Root and Soil Fungal Diversity", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The soil fungal community plays an important role in determining plant growth and health. In this study, we investigated the fungal diversity and community composition in the roots and soil of 21 potato (Solanum tuberosum L.) cultivars using high-throughput sequencing at three different time points across the growing season. In soil and roots, the fungal richness and relative abundance of pathogens and saprotrophs were mainly affected by sampling time. While sampling time affected fungal composition in soil, root fungal communities were also significantly affected by cultivar. The cultivar had the strongest effect on diversity of pathogens and abundance of particular pathogen species. Our results demonstrate changes in soil and root fungal communities of potato over the growing season, as well as highlighting the importance of potato cultivar on root fungal communities and abundance of pathogens.</p></article>", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "agroecosystems", "S", "high-throughput sequencing", "fungal guild", "<i>Solanum tuberosum</i>", "Agriculture", "15. 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