Gypsum soils in the Mediterranean Basin house large numbers of edaphic specialists that are adapted to stressful environments. The evolutionary history and standing genetic variation of these taxa have been influenced by the geological and paleoclimatic complexity of this area and the long\uffe2\uff80\uff90standing effect of human activities. However, little is known about the origin of Mediterranean gypsophiles and the factors affecting their genetic diversity and population structure.
METHODSUsing phylogenetic and phylogeographic approaches based on microsatellites and sequence data from nuclear and chloroplast regions, we evaluated the divergence time, genetic diversity, and population structure of 27 different populations of the widespread Iberian gypsophile Lepidium subulatum throughout its entire geographic range.
RESULTSLepidium subulatum diverged from its nearest relatives ~3 million years ago, and ITS and psbA/matK trees supported the monophyly of the species. These results suggest that both geological and climatic changes in the region around the Plio\uffe2\uff80\uff90Pleistocene promoted its origin, compared to other evolutionary processes. We found high genetic diversity in both nuclear and chloroplast markers, but a greater population structure in the chloroplast data. These results suggest that while seed dispersal is limited, pollen flow may be favored by the presence of numerous habitat patches that enhance the movement of pollinators.
CONCLUSIONSDespite being an edaphic endemic, L. subulatum possesses high genetic diversity probably related to its relatively old age and high population sizes across its range. Our study highlights the value of using different markers to fully understand the phylogeographic history of plant species.Selectively fluorinated compounds are found frequently in pharmaceutical and agrochemical products where currently 25\uffe2\uff80\uff9330\uffe2\uff80\uff89% of optimised compounds emerge from development containing at least one fluorine atom. There are many methods for the site\uffe2\uff80\uff90specific introduction of fluorine, but all are chemical and they often use environmentally challenging reagents. Biochemical processes for C\uffe2\uff88\uff92F bond formation are attractive, but they are extremely rare. In this work, the fluorinase enzyme, originally identified from the actinomycete bacterium Streptomyces cattleya, is engineered into Escherichia coli in such a manner that the organism is able to produce 5\uffe2\uff80\uffb2\uffe2\uff80\uff90fluorodeoxyadenosine (5\uffe2\uff80\uffb2\uffe2\uff80\uff90FDA) from S\uffe2\uff80\uff90adenosyl\uffe2\uff80\uff90l\uffe2\uff80\uff90methionine (SAM) and fluoride in live E.\uffe2\uff80\uff85coli cells. Success required the introduction of a SAM transporter and deletion of the endogenous fluoride efflux capacity in order to generate an E.\uffe2\uff80\uff85coli host that has the potential for future engineering of more elaborate fluorometabolites.
", "keywords": ["SAM transporters", "0301 basic medicine", "570", "S-Adenosylmethionine", "0303 health sciences", "Deoxyadenosines", "Halogenation", "DAS", "Fluorine", "Halogenations", "540", "QD Chemistry", "Streptomyces", "3. Good health", "03 medical and health sciences", "Bacterial Proteins", "Isomerism", "Escherichia coli", "QD", "Fluoride channels", "Genetic Engineering", "Oxidoreductases", "Fluorinases"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/cbic.202000051"}, {"href": "https://doi.org/10.1002/cbic.202000051"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/ChemBioChem", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/cbic.202000051", "name": "item", "description": "10.1002/cbic.202000051", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/cbic.202000051"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-03-03T00:00:00Z"}}, {"id": "10.1007/978-3-319-53498-5_74", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:14:31Z", "type": "Report", "created": "2017-06-10", "title": "Review on the Methods for Evaluation of Root Reinforcement in Shallow Landslides", "description": "Open image in new window Recently geotechnical engineers aim to adopt more environmental-friendly solutions (not harmful to the environment), therefore the interest on the use of vegetation as a measure to improve slope stability is increasing. The mechanical reinforcement due to roots against shallow landslides occurs when the fibres intersect the shear surface, usually at depths lower than 2 m. In the literature, the presence of roots is often taken into account by modelling the soil as an equivalent composite material: \u2018the root-permeated soil\u2019, by including an additional cohesion term in the Mohr-Coulomb equation. The models used to estimate the root additional cohesion are presented in the first part of the paper. In some cases, root cohesion is calculated based on the resistant properties of the fibres and assuming an order for the progressive roots failure, either breaking, slipping out or buckling. On the other hand, some authors used structural models of the roots investigating not only the stresses in the roots, but also in the surrounding soil to obtain a better estimation of the root cohesion. In the second part of the paper, the calculation of the root reinforcement is used to assess the safety factor (SF) of the slope. Both Limit Equilibrium analyses (LE) and Finite Element Methods (FEM) are discussed, stressing the limitations of both the approaches.", "keywords": ["Root mechanical reinforcement", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "Root cohesion", "Slope stability", "[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics", " Phylogenetics and taxonomy", "Shallow landslides", "[SDV.EE.ECO] Life Sciences [q-bio]/Ecology", " environment/Ecosystems", "0211 other engineering and technologies", "02 engineering and technology", "15. Life on land", "01 natural sciences", "[SDV.BV.BOT] Life Sciences [q-bio]/Vegetal Biology/Botanics", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/697661/1/10.1007%252F978-3-319-53498-5_74.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1007/978-3-319-53498-5"}, {"href": "http://link.springer.com/content/pdf/10.1007/978-3-319-53498-5_74"}, {"href": "https://doi.org/10.1007/978-3-319-53498-5_74"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/978-3-319-53498-5_74", "name": "item", "description": "10.1007/978-3-319-53498-5_74", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/978-3-319-53498-5_74"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-01-01T00:00:00Z"}}, {"id": "10.1007/s00122-021-03815-0", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:14:39Z", "type": "Journal Article", "created": "2021-03-25", "title": "Genomic prediction models trained with historical records enable populating the German ex situ genebank bio-digital resource center of barley (Hordeum\u00a0sp.) with information on resistances to soilborne barley mosaic viruses", "description": "Abstract Key messageGenomic prediction with special weight of major genes is a valuable tool to populate bio-digital resource centers.
AbstractPhenotypic information of crop genetic resources is a prerequisite for an informed selection that aims to broaden the genetic base of the elite breeding pools. We investigated the potential of genomic prediction based on historical screening data of plant responses against the Barley yellow mosaic viruses for populating the bio-digital resource center of barley. Our study includes dense marker data for 3838 accessions of winter barley, and historical screening data of 1751 accessions for Barley yellow mosaic virus (BaYMV) and of 1771 accessions for Barley mild mosaic virus (BaMMV). Linear mixed models were fitted by considering combinations for the effects of genotypes, years, and locations. The best linear unbiased estimations displayed a broad spectrum of plant responses against BaYMV and BaMMV. Prediction abilities, computed as correlations between predictions and observed phenotypes of accessions, were low for the marker-assisted selection approach amounting to 0.42. In contrast, prediction abilities of genomic best linear unbiased predictions were high, with values of 0.62 for BaYMV and 0.64 for BaMMV. Prediction abilities of genomic prediction were improved by up to\uffe2\uff80\uff89~\uffe2\uff80\uff895% using W-BLUP, in which more weight is given to markers with significant major effects found by association mapping. Our results outline the utility of historical screening data and W-BLUP model to predict the performance of the non-phenotyped individuals in genebank collections. The presented strategy can be considered as part of the different approaches used in genebank genomics to valorize genetic resources for their usage in disease resistance breeding and research.
", "keywords": ["Genetic Markers", "0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Genotype", "Chromosome Mapping", "Genetic Variation", "Hordeum", "Genomics", "Potyviridae", "Linkage Disequilibrium", "Plant Breeding", "03 medical and health sciences", "Phenotype", "Databases", " Genetic", "Original Article", "Genetic Association Studies", "Disease Resistance", "Plant Diseases"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1007/s00122-021-03815-0.pdf"}, {"href": "https://doi.org/10.1007/s00122-021-03815-0"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Theoretical%20and%20Applied%20Genetics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00122-021-03815-0", "name": "item", "description": "10.1007/s00122-021-03815-0", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00122-021-03815-0"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-25T00:00:00Z"}}, {"id": "10.1007/s00253-019-09689-z", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:14:40Z", "type": "Journal Article", "created": "2019-02-20", "title": "Distribution of Oenococcus oeni populations in natural habitats", "description": "Oenococcus oeni is the lactic acid bacteria species most commonly encountered in wine, where it develops after the alcoholic fermentation and achieves the malolactic fermentation that is needed to improve the quality of most wines. O. oeni is abundant in the oenological environment as well as in apple cider and kombucha, whereas it is a minor species in the natural environment. Numerous studies have shown that there is a great diversity of strains in each wine region and in each product or type of wine. Recently, genomic studies have shed new light on the species diversity, population structure, and environmental distribution. They revealed that O. oeni has unique genomic features that have contributed to its fast evolution and adaptation to the enological environment. They have also unveiled the phylogenetic diversity and genomic properties of strains that develop in different regions or different products. This review explores the distribution of O. oeni and the diversity of strains in natural habitats.", "keywords": ["0106 biological sciences", "0301 basic medicine", "570", "Evolution", "[SPI.GPROC] Engineering Sciences [physics]/Chemical and Process Engineering", "590", "Wine", "01 natural sciences", "Domestication", "Evolution", " Molecular", "03 medical and health sciences", "[SDV.IDA]Life Sciences [q-bio]/Food engineering", "MD Multidisciplinary", "[SPI.GPROC]Engineering Sciences [physics]/Chemical and Process Engineering", "Ecosystem", "Oenococcus", "Phylogeny", "0303 health sciences", "Malolactic fermentation", "Genetic Variation", "Genomics", "[SDV.IDA] Life Sciences [q-bio]/Food engineering", "Mini-Review", "Fermentation", "Oenococcus oeni", "Biotechnology"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s00253-019-09689-z.pdf"}, {"href": "https://doi.org/10.1007/s00253-019-09689-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Microbiology%20and%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00253-019-09689-z", "name": "item", "description": "10.1007/s00253-019-09689-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00253-019-09689-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-02-20T00:00:00Z"}}, {"id": "10.1007/s00425-017-2647-2", "type": "Feature", "geometry": null, "properties": {"license": "Restricted", "updated": "2026-07-27T16:14:48Z", "type": "Journal Article", "created": "2017-01-04", "title": "The cost of surviving nitrogen excess: energy and protein demand in the lichen Cladonia portentosa as revealed by proteomic analysis", "description": "Different nitrogen forms affect different metabolic pathways in lichens. In particular, the most relevant changes in protein expression were observed in the fungal partner, with NO 3- mostly affecting the energetic metabolism and NH 4+ affecting transport and regulation of proteins and the energetic metabolism much more than NO 3- did. Excess deposition of reactive nitrogen is a well-known agent of stress for lichens, but which symbiont is most affected and how, remains a mystery. Using proteomics can expand our understanding of stress effects on lichens. We investigated the effects of different doses and forms of reactive nitrogen, with and without supplementary phosphorus and potassium, on the proteome of the lichen Cladonia portentosa growing in a 'real-world' simulation of nitrogen deposition. Protein expression changed with the nitrogen treatments but mostly in the fungal partner, with NO3- mainly affecting the energetic metabolism and NH4+ also affecting the protein synthesis machinery. The photobiont mainly responded overexpressing proteins involved in energy production. This suggests that in response to nitrogen stress, the photobiont mainly supports the defensive mechanisms initiated by the mycobiont with an increased energy production. Such surplus energy is then used by the cell to maintain functionality in the presence of NO3-, while a futile cycle of protein production can be hypothesized to be induced by NH4+ excess. External supply of potassium and phosphorus influenced differently the responses of particular enzymes, likely reflecting the many processes in which potassium exerts a regulatory function.", "keywords": ["Chlorophyll", "Proteomics", "0301 basic medicine", "570", "mycobiont", "Lichens", "Nitrogen", "Cell Respiration", "Nitrate", "Mass Spectrometry", "Molecular mechanism", "03 medical and health sciences", "nitrate", "Ammonia", "Electrophoresis", " Gel", " Two-Dimensional", "Photosynthesis", "Ammonium", " Molecular mechanism", " Mycobiont", " Nitrate", " Photobiont", " Stress response", "Ammonium; Molecular mechanism; Mycobiont; Nitrate; Photobiont; Stress response; Genetics; Plant Science", "0303 health sciences", "Nitrates", "Stress response", "Chlorophyll A", "stress response", "Mycobiont", "ammonium", "Photobiont", "photobiont", "molecular mechanism", "Energy Metabolism", "Ammonium"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s00425-017-2647-2.pdf"}, {"href": "https://doi.org/10.1007/s00425-017-2647-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Planta", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00425-017-2647-2", "name": "item", "description": "10.1007/s00425-017-2647-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00425-017-2647-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-01-04T00:00:00Z"}}, {"id": "10.1007/s00572-016-0694-3", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:14:51Z", "type": "Journal Article", "created": "2016-04-14", "title": "Organic Amendments Increase Phylogenetic Diversity Of Arbuscular Mycorrhizal Fungi In Acid Soil Contaminated By Trace Elements", "description": "In 1998, a toxic mine spill polluted a 55-km(2) area in a basin southward to Do\u00f1ana National Park (Spain). Subsequent attempts to restore those trace element-contaminated soils have involved physical, chemical, or biological methodologies. In this study, the restoration approach included application of different types and doses of organic amendments: biosolid compost (BC) and leonardite (LEO). Twelve years after the last addition, molecular analyses of arbuscular mycorrhizal (AM) fungal communities associated with target plants (Lamarckia aurea and Chrysanthemum coronarium) as well as analyses of trace element concentrations both in soil and in plants were performed. The results showed an improved soil quality reflected by an increase in soil pH and a decrease in trace element availability as a result of the amendments and dosages. Additionally, the phylogenetic diversity of the AM fungal community increased, reaching the maximum diversity at the highest dose of BC. Trace element concentration was considered the predominant soil factor determining the AM fungal community composition. Thereby, the studied AM fungal community reflects a community adapted to different levels of contamination as a result of the amendments. The study highlights the long-term effect of the amendments in stabilizing the soil system.", "keywords": ["2. Zero hunger", "0301 basic medicine", "Minerals", "0303 health sciences", "Bioindicator", "Chrysanthemum", "Genetic Variation", "Hydrogen-Ion Concentration", "15. Life on land", "Poaceae", "Soil biodiversity", "Trace element contaminated soils", "Ecosystem restoration", "Mining", "Soil fungal community", "Trace Elements", "Soil", "03 medical and health sciences", "Biodegradation", " Environmental", "13. Climate action", "Mycorrhizae", "Mine spill", "Bioindicators", "Soil Pollutants", "Phylogeny"]}, "links": [{"href": "https://doi.org/10.1007/s00572-016-0694-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Mycorrhiza", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00572-016-0694-3", "name": "item", "description": "10.1007/s00572-016-0694-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00572-016-0694-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-04-12T00:00:00Z"}}, {"id": "10.1016/j.envexpbot.2024.105986", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:16:23Z", "type": "Journal Article", "created": "2024-10-04", "title": "From landraces to haplotypes, exploiting a genomic and phenomic approach to identify heat tolerant genotypes within durum wheat landraces", "description": "Dry and hot climates severely impact wheat yields, necessitating the development of innovative solutions to accelerate the breeding and selection of more adaptable durum wheat genotypes. The aim of this study was to identify new wheat ecotypes that can bridge the gap between commercial varieties and adaptability to ongoing climate change. In this study, advanced genomic and phenomic techniques were combined to characterize a set of durum wheat landraces derived from single seed descent (SSD). This approach enabled the identification of novel variability in the TdHsp26-A1 and-B1 genes. As a result, 38 durum wheat genotypes were analyzed using targeted enrichment PCR, leading to the identification of 17 novel haplotype combinations with SNPs in the TdHsp26 genes. The response of these SSD haplotypes to heat stress was characterized at both the seedling and tillering growth stages. Phenotypic analysis of contrasting genotypes led to the selection of two distinct genotypes: SSD69 and SSD397. During heat stress, SSD69 exhibited altered accumulation of H2O2 2 O 2 and MDA content under both growth conditions, providing new insights into the oxidative response to heat stress. Additionally, this work identifies phenotypic traits that are suitable for detecting differences between variants. The geographic distribution of the different alleles aligned with the spread of durum wheat from its center of origin.", "keywords": ["Natural germplasm", "Phenotyping", "Settore AGRI-06/A - Genetica agraria", "Heat stre", "Durum wheat", " Natural germplasm", " sHsp26", " Heat stress", " Phenotyping", " SNPs", "Durum wheat", "sHsp26", "630", "SNPs"]}, "links": [{"href": "https://iris.cnr.it/bitstream/20.500.14243/526470/1/From%20landraces%20to%20haplotypes%2c%20exploiting%20a%20genomic%20and%20phenomic%20approach%20to%20identify%20heat%20tolerant%20genotypes%20within%20durum%20wheat%20landraces.pdf"}, {"href": "https://doi.org/10.1016/j.envexpbot.2024.105986"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20and%20Experimental%20Botany", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envexpbot.2024.105986", "name": "item", "description": "10.1016/j.envexpbot.2024.105986", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envexpbot.2024.105986"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-12-01T00:00:00Z"}}, {"id": "10.1007/s11104-021-05261-9", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:15:21Z", "type": "Journal Article", "created": "2022-01-30", "title": "Tracing hotspots of soil erosion in high mountain environments: how forensic science based on plant eDNA can lead the way. An opinion", "description": "High mountain environments are among the most fragile on Earth. Due to anthropogenic disturbances and the exposure to extreme weather events, the rates of soil erosion have recently been accelerating, resulting in ecological degradation and geological hazards. Ecological restoration of mountains and an improved understanding of nature-based solutions to mitigate land degradation is therefore of utmost urgency. Identifying hotspots of soil erosion is a first step towards improving mitigation strategies. A promising methodology to identify erosion hotspots is sediment source fingerprinting, that differentiates the properties of soil from different sources, using signatures such as elemental geochemistry or radionuclides. However, in areas with complex lithologies or shallow and poorly developed soils, geochemical fingerprints allow only a rough distinction between erosion hotspots. In this opinion paper, we explore the relevance of environmental DNA (eDNA) that originates from plant litter and fixes onto fine soil particles, as a targeted sediment fingerprinting method sensitive to vegetation that could potentially allow the identification of erosion hotspots and their relative importance from sedimentary deposits. Pioneering studies indicate that eDNA allows not only the detection of specific vegetation communities, but also the identification of individual plant species. Supported by the increasing availability and quality of vegetation maps and eDNA reference libraries, we argue that sediment source fingerprinting using eDNA from plant litter, will evolve into a valuable method to identify hotspots of soil erosion and allow stakeholders to prioritize areas where ecological restoration is necessary in high mountain environments.", "keywords": ["Soil and water bioengineering", "Vegetation", "[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics", "550", "Sediment source fingerprinting", "Phylogenetics and taxonomy", "[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics", "15. Life on land", "Alpine", "01 natural sciences", "[SDV.BV.BOT] Life Sciences [q-bio]/Vegetal Biology/Botanics", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "Landslide", "Erosion", "13. Climate action", "[SDV.EE.ECO]Life Sciences [q-bio]/Ecology", "[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics", " Phylogenetics and taxonomy", "[SDV.EE.ECO] Life Sciences [q-bio]/Ecology", " environment/Ecosystems", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "environment/Ecosystems", "sedDNA", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1007/s11104-021-05261-9.pdf"}, {"href": "https://doi.org/10.1007/s11104-021-05261-9"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-021-05261-9", "name": "item", "description": "10.1007/s11104-021-05261-9", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-021-05261-9"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-30T00:00:00Z"}}, {"id": "10.1007/s11104-023-05991-y", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:15:22Z", "type": "Journal Article", "created": "2023-05-10", "title": "Tree stem and soil methane and nitrous oxide fluxes, but not carbon dioxide fluxes, switch sign along a topographic gradient in a tropical forest", "description": "PurposeInvestigating active participants in the fixation of dinitrogen gas is vital as N is often a limiting factor for primary production. Biological nitrogen fixation is performed by a diverse guild of bacteria and archaea (diazotrophs), which can be free\uffe2\uff80\uff90living or symbionts. Free\uffe2\uff80\uff90living diazotrophs are widely distributed in the environment, yet our knowledge about their identity and ecophysiology is still limited. A major challenge in investigating this guild is inferring activity from genetic data as this process is highly regulated. To address this challenge, we evaluated and improved several 15N\uffe2\uff80\uff90based methods for detecting N2 fixation activity (with a focus on soil samples) and studying active diazotrophs. We compared the acetylene reduction assay and the 15N2 tracer method and demonstrated that the latter is more sensitive in samples with low activity. Additionally, tracing 15N into microbial RNA provides much higher sensitivity compared to bulk soil analysis. Active soil diazotrophs were identified with a 15N\uffe2\uff80\uff90RNA\uffe2\uff80\uff90SIP approach optimized for environmental samples and benchmarked to 15N\uffe2\uff80\uff90DNA\uffe2\uff80\uff90SIP. Lastly, we investigated the feasibility of using SIP\uffe2\uff80\uff90Raman microspectroscopy for detecting 15N\uffe2\uff80\uff90labelled cells. Taken together, these tools allow identifying and investigating active free\uffe2\uff80\uff90living diazotrophs in a highly sensitive manner in diverse environments, from bulk to the single\uffe2\uff80\uff90cell level.
", "keywords": ["Spectrum Analysis", " Raman", "BIOLOGICAL SOIL CRUSTS", "106005 Bioinformatik", "106023 Molekularbiologie", "Nitrogen Fixation", "REVEALS", "FLUORESCENCE", "Research Articles", "Soil Microbiology", "106022 Mikrobiologie", "SPECTROSCOPY", "Bacteria", "Nitrogen Isotopes", "106003 Biodiversity research", "106023 Molecular biology", "GENETIC-REGULATION", "Archaea", "6. Clean water", "SURFACE-ENHANCED RAMAN", "COMMUNITY", "106003 Biodiversit\u00e4tsforschung", "13. Climate action", "Isotope Labeling", "106022 Microbiology", "NITROGEN-FIXATION", "106005 Bioinformatics", "RIBOSOMAL-RNA", "N-2 FIXATION"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.13954"}, {"href": "https://doi.org/10.1111/1462-2920.13954"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.13954", "name": "item", "description": "10.1111/1462-2920.13954", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.13954"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-12-15T00:00:00Z"}}, {"id": "10.1016/j.isci.2019.10.043", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:16:51Z", "type": "Journal Article", "created": "2019-10-25", "title": "Genetic Loci Associated with Early Salt Stress Responses of Roots", "description": "Salinity is a devastating abiotic stress accounting for major crop losses yearly. Plant roots can strikingly grow away from high-salt patches. This response is termed halotropism and occurs through auxin redistribution in roots in response to a salt gradient. Here, a natural variation screen for the early and NaCl-specific halotropic response of 333 Arabidopsis accessions revealed quantitative differences in the first 24 h. These data were successfully used to identify genetic components associated with the response through Genome-Wide Association Study (GWAS). Follow-up characterization of knockout mutants in Col-0 background confirmed the role of transcription factor WRKY25, cation-proton exchanger CHX13, and a gene of unknown function DOB1 (Double Bending 1) in halotropism. In chx13 and dob1 mutants, ion accumulation and shoot biomass under salt stress were also affected. Thus, our GWAS has identified genetic components contributing to main root halotropism that provide insight into the genetic architecture underlying plant salt responses.", "keywords": ["580", "0301 basic medicine", "2. Zero hunger", "570", "0303 health sciences", "Science", "Q", "Plant Biology", "Biological Sciences", "15. Life on land", "Plant Genetics", "Article", "03 medical and health sciences", "Plant Physiology"]}, "links": [{"href": "https://doi.org/10.1016/j.isci.2019.10.043"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/iScience", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.isci.2019.10.043", "name": "item", "description": "10.1016/j.isci.2019.10.043", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.isci.2019.10.043"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-11-01T00:00:00Z"}}, {"id": "10.1016/j.geoderma.2015.04.007", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:16:46Z", "type": "Journal Article", "created": "2015-04-18", "title": "Will Changes In Climate And Land Use Affect Soil Organic Matter Composition? Evidence From An Ecotonal Climosequence", "description": "Abstract As the largest actively cycling pool of terrestrial C, the response of soil organic matter (SOM) to climate change may greatly affect global C cycling and climate change feedbacks. Despite the influence of SOM chemistry\u2014here defined as soil organic C (SOC) and soil organic N (SON) functional groups and compounds\u2014on decomposition, uncertainty exists regarding the response of SOM chemistry to climate change and associated land use shifts. Here, we adopt a climosequence approach, using latitude along a uniform glacial till deposit at the grassland\u2013forest ecotone in central Canada as a surrogate for the effects of climate change on SOM chemistry. Additionally, we evaluate differences in SOM chemistry from paired native grassland, native trembling aspen ( Populus tremuloides ) forest, and arable soil profiles to investigate the effects of likely climate-induced land use alterations. The combination of C and N K -edge X-ray absorption near edge structure (XANES) with pyrolysis-field ionization mass spectrometry (Py-FIMS) techniques was used to examine SOM chemistry at atomic and molecular scales, respectively. These techniques revealed only modest differences in surface SOM chemistry related to land use and latitude. Greater variation was apparent in the vertical stratification of SOM constituents from soil depth profiles. These findings indicate that pedon-scale processes have greater control over SOM chemistry than do processes operating on landscape (e.g. land use) and regional (e.g. climate) scales. Additionally they imply that SOM chemistry is largely unresponsive to climatic change on the magnitude of the mean annual temperature (MAT) gradient under study (~\u00a00.7\u00a0\u00b0C), despite its location at the grassland\u2013forest boundary highlighting its sensitivity, and is similarly unresponsive to associated land use shifts.", "keywords": ["Vegetation", "Ecology and Evolutionary Biology", "Plant Sciences", "Agriculture", "Genetics and Genomics", "04 agricultural and veterinary sciences", "15. Life on land", "Soil quality", "13. Climate action", "Land use", "Climate change", "0401 agriculture", " forestry", " and fisheries", "Organic nitrogen", "Forest Sciences", "Organic carbon"], "contacts": [{"organization": "Purton, Kendra, Pennock, Dan, Leinweber, Peter, Walley, Fran,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.geoderma.2015.04.007"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geoderma", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.geoderma.2015.04.007", "name": "item", "description": "10.1016/j.geoderma.2015.04.007", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.geoderma.2015.04.007"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-09-01T00:00:00Z"}}, {"id": "10.1016/j.ijfoodmicro.2021.109043", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:16:50Z", "type": "Journal Article", "created": "2021-01-08", "title": "Unraveling the emergence and population diversity of Listeria monocytogenes in a newly built meat facility through whole genome sequencing", "description": "The food processing environments of a newly opened meat processing facility were sampled in ten visits carried out during its first 1.5\u00a0years of activity and analyzed for the presence of Listeria monocytogenes. A total of 18 L. monocytogenes isolates were obtained from 229 samples, and their genomes were sequenced to perform comparative genomic analyses. An increase in the frequency of isolation of L. monocytogenes and in the diversity of sequence types (STs) detected was observed along time. Although the strains isolated belonged to six different STs (ST8, ST9, ST14, ST37, ST121 and ST155), ST9 was the most abundant (8 out of 18 strains). Low (0 and 2) single nucleotide polymorphism (SNP) distances were found between two pairs of ST9 strains isolated in both cases 3\u00a0months apart from the same processing room (Lm-1267 and Lm-1705, with a 2 SNPs distance in the core genome; Lm-1265 and Lm-1706, with a 0 SNPs distance), which suggests that these strains may be persistent L. monocytogenes strains in the food processing environment. Most strains showed an in silico attenuated virulence potential either through the truncation of InlA (in 67% of the isolates) or the absence of other virulence factors involved in cell adhesion or invasion. Twelve of the eighteen L. monocytogenes isolates contained a plasmid, which ranged in size from 4 to 87 Kb and harbored stress survival, in addition to heavy metals and biocides resistance determinants. Identical or highly similar plasmids were identified for various sets of L. monocytogenes ST9 isolates, which suggests the clonal expansion and persistence of plasmid-containing ST9 strains in the processing environments of the meat facility. Finally, the analysis of the L. monocytogenes genomes available in the NCBI database, and their associated metadata, evidenced that strains from ST9 are more frequently reported in Europe, linked to foods, particularly to meat and pork products, and less represented among clinical isolates than other L. monocytogenes STs. It also showed that the ST9 strains here isolated were more closely related to the European isolates, which clustered together and separated from ST9 North American isolates.", "keywords": ["0301 basic medicine", "Meat", "Food Handling", "Swine", "Virulence Factors", "Tecnolog\u00eda de los alimentos", "Food processing environment", "Persistence", "03 medical and health sciences", "Manufacturing and Industrial Facilities", "Floors and Floorcoverings", "Animals", "2. Zero hunger", "0303 health sciences", "Virulence", "Whole Genome Sequencing", "Genetic Variation", "Gen\u00e9tica", "Listeria monocytogenes", "Europe", "Genes", " Bacterial", "Whole genome sequencing", "Food Microbiology", "Equipment Contamination", "Disinfectants", "Plasmids"]}, "links": [{"href": "https://doi.org/10.1016/j.ijfoodmicro.2021.109043"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/International%20Journal%20of%20Food%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.ijfoodmicro.2021.109043", "name": "item", "description": "10.1016/j.ijfoodmicro.2021.109043", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.ijfoodmicro.2021.109043"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-01T00:00:00Z"}}, {"id": "10.1016/j.landusepol.2022.106065", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:17:02Z", "type": "Journal Article", "created": "2022-02-28", "title": "Expansion of olive orchards and their impact on the cultivation and landscape through a case study in the countryside of Cordoba (Spain)", "description": "Open Access\u062a\u0645 \u062a\u0639\u0632\u064a\u0632 \u0627\u0633\u062a\u062f\u0627\u0645\u0629 \u0627\u0644\u0646\u0638\u0645 \u0627\u0644\u0632\u0631\u0627\u0639\u064a\u0629 \u0645\u0646 \u062e\u0644\u0627\u0644 \u0627\u0644\u062a\u0634\u0631\u064a\u0639\u0627\u062a \u0639\u0644\u0649 \u0645\u0633\u062a\u0648\u064a\u0627\u062a \u0645\u062e\u062a\u0644\u0641\u0629\u060c \u0648\u0644\u0643\u0646 \u0641\u064a \u0627\u0644\u0648\u0642\u062a \u0646\u0641\u0633\u0647 \u062a\u0639\u0632\u0632 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\u0627\u0644\u0633\u064a\u0627\u0633\u0627\u062a \u0627\u0644\u0632\u0631\u0627\u0639\u064a\u0629 \u0645\u062a\u0639\u062f\u062f\u0629 \u0627\u0644\u0645\u0633\u062a\u0648\u064a\u0627\u062a \u0643\u0645\u0646\u0627\u0637\u0642 \u0627\u0633\u062a\u0639\u0627\u062f\u0629 \u0645\u062d\u062a\u0645\u0644\u0629 \u0644\u062a\u0639\u0632\u064a\u0632 \u062a\u0648\u0641\u064a\u0631 \u062e\u062f\u0645\u0627\u062a \u0627\u0644\u0646\u0638\u0627\u0645 \u0627\u0644\u0625\u064a\u0643\u0648\u0644\u0648\u062c\u064a.", "keywords": ["Period (music)", "Soil Degradation", "Vascular Flora of Mediterranean Europe and North Africa", "Soil Science", "Orchard", "Plant Science", "Mediterranean", "Horticulture", "Genetic and Environmental Factors in Grapevine Cultivation", "01 natural sciences", "Environmental science", "Agricultural and Biological Sciences", "Pathology", "Ecosystem services", "Landscape elements", "Agroforestry", "Irrigation", "Biology", "0105 earth and related environmental sciences", "2. Zero hunger", "Geography", "Ecology", "Physics", "Common agricultural policy", "Olive groves", "Life Sciences", "Agriculture", "Forestry", "Acoustics", "04 agricultural and veterinary sciences", "15. Life on land", "Soil Erosion and Agricultural Sustainability", "Olive trees", "Agronomy", "Sustainability", "Archaeology", "FOS: Biological sciences", "Shifting cultivation", "Medicine", "0401 agriculture", " forestry", " and fisheries", "Vegetation (pathology)"]}, "links": [{"href": "https://doi.org/10.1016/j.landusepol.2022.106065"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Land%20Use%20Policy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.landusepol.2022.106065", "name": "item", "description": "10.1016/j.landusepol.2022.106065", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.landusepol.2022.106065"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-05-01T00:00:00Z"}}, {"id": "10.1038/s41467-020-15622-0", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:18:21Z", "type": "Journal Article", "created": "2020-05-05", "title": "Sustained fluvial deposition recorded in Mars\u2019 Noachian stratigraphic record", "description": "AbstractOrbital observation has revealed a rich record of fluvial landforms on Mars, with much of this record dating 3.6\uffe2\uff80\uff933.0 Ga. Despite widespread geomorphic evidence, few analyses of Mars\uffe2\uff80\uff99 alluvial sedimentary-stratigraphic record exist, with detailed studies of alluvium largely limited to smaller sand-bodies amenable to study in-situ by rovers. These typically metre-scale outcrop dimensions have prevented interpretation of larger scale channel-morphology and long-term basin evolution, vital for understanding the past Martian climate. Here we give an interpretation of a large sedimentary succession at Izola mensa within the NW Hellas Basin rim. The succession comprises channel and barform packages which together demonstrate that river deposition was already well established >3.7 Ga. The deposits mirror terrestrial analogues subject to low-peak discharge variation, implying that river deposition at Izola was subject to sustained, potentially perennial, fluvial flow. Such conditions would require an environment capable of maintaining large volumes of water for extensive time-periods, necessitating a precipitation-driven hydrological cycle.
", "keywords": ["550", "Science", "General Biochemistry", "Genetics and Molecular Biology", "Q", "500", "General Physics and Astronomy", "Geomorphology", "General Chemistry", "15. Life on land", "01 natural sciences", "Article", "12. Responsible consumption", "Sedimentology", " Stratigraphy", " Fluvial Deposits", " Mars", " Sedimentary Deposits", "[SDU.STU.PL]Sciences of the Universe [physics]/Earth Sciences/Planetology", "13. Climate action", "Inner planets", "[SDU.STU.PL] Sciences of the Universe [physics]/Earth Sciences/Planetology", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://oro.open.ac.uk/70442/1/70442.pdf"}, {"href": "https://www.nature.com/articles/s41467-020-15622-0.pdf"}, {"href": "https://doi.org/10.1038/s41467-020-15622-0"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Communications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41467-020-15622-0", "name": "item", "description": "10.1038/s41467-020-15622-0", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41467-020-15622-0"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-05-05T00:00:00Z"}}, {"id": "10.1038/s41467-020-16438-8", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:18:21Z", "type": "Journal Article", "created": "2020-05-25", "title": "Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome", "description": "AbstractLactic acid bacteria (LAB) are fundamental in the production of fermented foods and several strains are regarded as probiotics. Large quantities of live LAB are consumed within fermented foods, but it is not yet known to what extent the LAB we ingest become members of the gut microbiome. By analysis of 9445 metagenomes from human samples, we demonstrate that the prevalence and abundance of LAB species in stool samples is generally low and linked to age, lifestyle, and geography, with Streptococcus thermophilus and Lactococcus lactis being most prevalent. Moreover, we identify genome-based differences between food and gut microbes by considering 666 metagenome-assembled genomes (MAGs) newly reconstructed from fermented food microbiomes along with 154,723 human MAGs and 193,078 reference genomes. Our large-scale genome-wide analysis demonstrates that closely related LAB strains occur in both food and gut environments and provides unprecedented evidence that fermented foods can be indeed regarded as a possible source of LAB for the gut microbiome.
", "keywords": ["Primates", "0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Science", "Probiotics", "Q", "gut microbiome", "Article", "Gastrointestinal Microbiome", "lactic acid bacteria", "Lactococcus lactis", "03 medical and health sciences", "Lactobacillales", "Databases", " Genetic", "Food Microbiology", "Animals", "Humans", "Metagenome", "Streptococcus thermophilus", "Fermented Foods", "[PHYS.ASTR] Physics [physics]/Astrophysics [astro-ph]", "Life Style", "genome analysis"]}, "links": [{"href": "https://iris.unitn.it/bitstream/11572/269813/1/s41467-020-16438-8.pdf"}, {"href": "https://www.iris.unina.it/bitstream/11588/811717/2/NatComm%2c2020_LABfoodgut.pdf"}, {"href": "https://www.nature.com/articles/s41467-020-16438-8.pdf"}, {"href": "https://doi.org/10.1038/s41467-020-16438-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Communications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41467-020-16438-8", "name": "item", "description": "10.1038/s41467-020-16438-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41467-020-16438-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-05-25T00:00:00Z"}}, {"id": "10.1016/j.plantsci.2023.111919", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:17:05Z", "type": "Journal Article", "created": "2023-11-20", "title": "Phytosiderophore pathway response in barley exposed to iron, zinc or copper starvation", "description": "Efficient micronutrient acquisition is a critical factor in selecting micronutrient dense crops for human consumption. Enhanced exudation and re-uptake of metal chelators, so-called phytosiderophores, by roots of graminaceous plants has been implicated in efficient micronutrient acquisition. We compared PS biosynthesis and exudation as a response mechanism to either Fe, Zn or Cu starvation. Two barley (Hordeum vulgare L.) lines with contrasting micronutrient grain yields were grown hydroponically and PS exudation (LC-MS) and root gene expression (RNAseq) were determined after either Fe, Zn, or Cu starvation. The response strength of the PS pathway was micronutrient dependent and decreased in the order Fe >\u00a0Zn >\u00a0Cu deficiency. We observed a stronger expression of PS pathway genes and greater PS exudation in the barley line with large micronutrient grain yield suggesting that a highly expressed PS pathway might be an important trait involved in high micronutrient accumulation. In addition to several metal specific transporters, we also found that the expression of IRO2 and bHLH156 transcription factors was not only induced under Fe but also under Zn and Cu deficiency. Our study delivers important insights into the role of the PS pathway in the acquisition of different micronutrients.", "keywords": ["2. Zero hunger", "Phytosiderophore", "/dk/atira/pure/subjectarea/asjc/1300/1311", "/dk/atira/pure/subjectarea/asjc/1100/1102", "Root exudation", "name=Genetics", "Iron", "/dk/atira/pure/subjectarea/asjc/1100/1110", "Hordeum", "Copper deficiency", "Plant Roots", "630", "Mugineic acid", "name=Agronomy and Crop Science", "Zinc", "Barley", "Humans", "Micronutrients", "name=Plant Science", "Biofortification", "Copper"]}, "links": [{"href": "https://doi.org/10.1016/j.plantsci.2023.111919"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.plantsci.2023.111919", "name": "item", "description": "10.1016/j.plantsci.2023.111919", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.plantsci.2023.111919"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-02-01T00:00:00Z"}}, {"id": "10.1016/j.scitotenv.2022.156952", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:17:14Z", "type": "Journal Article", "created": "2022-06-22", "title": "Integrated organic and inorganic fertilization and reduced irrigation altered prokaryotic microbial community and diversity in different compartments of wheat root zone contributing to improved nitrogen uptake and wheat yield", "description": "Open AccessThe effect of long-term water and integrated fertilization on prokaryotic microorganisms and their regulation for crop nutrient uptake remains unknown. Therefore, the impact of soil water and integrated fertilization after eight years on prokaryotic microbial communities in different compartments of root zone and their association with wheat nitrogen (N) absorption and yield were investigated. The results showed that compared with fertilization treatments (F), water regimes (W) more drastically modulated the prokaryotic microbial community structure and diversity in bulk soil, rhizosphere and endosphere. The increase of irrigation improved the prokaryotic diversity in the rhizosphere and endosphere while decreased the diversity in the bulk soil. Application of organic fertilizers significantly improved soil organic matter (SOM) and nutrient contents, increased rhizosphere and endophytic prokaryotic microbial diversity, and elevated the relative abundance of aerobic ammonia oxidation and nitrification-related functional microorganisms in rhizosphere and endosphere. Increasing irrigation elevated the relative abundance of functional microorganisms related to aerobic ammonia oxidation and nitrification in the rhizosphere and endosphere. Soil water content (SWC) and NH4+-N as well as NO3\u2212-N were key predictors of prokaryotic microbial community composition under W and F treatments, respectively. Appropriate application of irrigation and organic fertilizers increased the relative abundance of some beneficial bacteria such as Flavobacterium. Water and fertilization treatments regulated the prokaryotic microbial communities of bulk soil, rhizosphere and endosphere by altering SWC and SOM, and provided evidence for the modulation of prokaryotic microorganisms to promote nitrogen uptake and wheat yield under long-term irrigation and fertilization. Conclusively, the addition of organic manure (50 %) with inorganic fertilizers (50 %) and reduced amount of irrigation (pre-sowing and jointing-period irrigation) decreased the application amount of chemical fertilizers and water, while increased SOM and nutrient content, improved prokaryotic diversity, and changed prokaryotic microbial community structure in the wheat root zone, resulting in enhanced nutrient uptake and wheat yield.", "keywords": ["0106 biological sciences", "Yield", "Microorganism", "Microbial population biology", "Nitrogen", "Soil Science", "Organic chemistry", "Plant Science", "01 natural sciences", "Environmental science", "Agricultural and Biological Sciences", "Soil", "Symbiotic Nitrogen Fixation in Legumes", "Soil water", "Genetics", "Fertilizers", "Biology", "Irrigation", "Soil Microbiology", "Triticum", "2. Zero hunger", "Soil organic matter", "Soil Fertility", "Physicochemical factors", "Ecology", "Bacteria", "Microbiota", "Marine Microbial Diversity and Biogeography", "Water", "Life Sciences", "04 agricultural and veterinary sciences", "15. Life on land", "Nitrification", "Agronomy", "6. Clean water", "Chemistry", "Human fertilization", "13. Climate action", "Fertilization", "FOS: Biological sciences", "Environmental Science", "Physical Sciences", "Rhizosphere", "Bulk soil", "0401 agriculture", " forestry", " and fisheries", "Prokaryotic microorganisms", "Endosphere", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Nutrient"]}, "links": [{"href": "https://doi.org/10.1016/j.scitotenv.2022.156952"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.scitotenv.2022.156952", "name": "item", "description": "10.1016/j.scitotenv.2022.156952", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.scitotenv.2022.156952"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-10-01T00:00:00Z"}}, {"id": "10.2134/jeq2006.0540", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:20:57Z", "type": "Journal Article", "created": "2008-02-12", "title": "Impact Of Glyphosate-Tolerant Soybean And Glufosinate-Tolerant Corn Production On Herbicide Losses In Surface Runoff", "description": "AbstractResidual herbicides used in the production of soybean [Glycine max (L.) Merr] and corn (Zea mays L.) are often detected in surface runoff at concentrations exceeding their maximum contaminant levels (MCL) or health advisory levels (HAL). With the advent of transgenic, glyphosate\uffe2\uff80\uff90tolerant soybean and glufosinate\uffe2\uff80\uff90tolerant corn this concern might be reduced by replacing some of the residual herbicides with short half\uffe2\uff80\uff90life, strongly sorbed, contact herbicides. We applied both herbicide types to two chiseled and two no\uffe2\uff80\uff90till watersheds in a 2\uffe2\uff80\uff90yr corn\uffe2\uff80\uff93soybean rotation and at half rates to three disked watersheds in a 3\uffe2\uff80\uff90yr corn/soybean/wheat (Triticum aestivum L.)\uffe2\uff80\uff90red clover (Trifolium pratense L.) rotation and monitored herbicide losses in runoff water for four crop years. In soybean years, average glyphosate loss (0.07%) was \uffe2\uff88\uffbc1/7 that of metribuzin (0.48%) and about one\uffe2\uff80\uff90half that of alachlor (0.12%), residual herbicides it can replace. Maximum, annual, flow\uffe2\uff80\uff90weighted concentration of glyphosate (9.2 \uffce\uffbcg L\uffe2\uff88\uff921) was well below its 700 \uffce\uffbcg L\uffe2\uff88\uff921 MCL and metribuzin (9.5 \uffce\uffbcg L\uffe2\uff88\uff921) was well below its 200 \uffce\uffbcg L\uffe2\uff88\uff921 HAL, whereas alachlor (44.5 \uffce\uffbcg L\uffe2\uff88\uff921) was well above its 2 \uffce\uffbcg L\uffe2\uff88\uff921 MCL. In corn years, average glufosinate loss (0.10%) was similar to losses of alachlor (0.07%) and linuron (0.15%), but about one\uffe2\uff80\uff90fourth that of atrazine (0.37%). Maximum, annual, flow\uffe2\uff80\uff90weighted concentration of glufosinate (no MCL) was 3.5 \uffce\uffbcg L\uffe2\uff88\uff921, whereas atrazine (31.5 \uffce\uffbcg L\uffe2\uff88\uff921) and alachlor (9.8 \uffce\uffbcg L\uffe2\uff88\uff921) substantially exceeded their MCLs of 3 and 2 \uffce\uffbcg L\uffe2\uff88\uff921, respectively. Regardless of tillage system, flow\uffe2\uff80\uff90weighted atrazine and alachlor concentrations exceeded their MCLs in at least one crop year. Replacing these herbicides with glyphosate and glufosinate can reduce the occurrence of dissolved herbicide concentrations in runoff exceeding drinking water standards.
", "keywords": ["2. Zero hunger", "Glyphosate", "Glycine max", "Herbicides", "Rain", "Glycine", "Agriculture", "Drug Tolerance", "04 agricultural and veterinary sciences", "15. Life on land", "Plants", " Genetically Modified", "Zea mays", "6. Clean water", "Water Supply", "13. Climate action", "Water Movements", "0401 agriculture", " forestry", " and fisheries", "Water Pollutants", " Chemical", "Environmental Monitoring", "Ohio"]}, "links": [{"href": "https://doi.org/10.2134/jeq2006.0540"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environmental%20Quality", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2134/jeq2006.0540", "name": "item", "description": "10.2134/jeq2006.0540", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2134/jeq2006.0540"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-03-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2022.108754", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:17:30Z", "type": "Journal Article", "created": "2022-06-06", "title": "Effects of common European tree species on soil microbial resource limitation, microbial communities and soil carbon", "description": "Open Access\u0643\u0634\u0641\u062a \u0627\u0644\u062f\u0631\u0627\u0633\u0627\u062a \u0627\u0644\u062a\u064a \u0623\u062c\u0631\u064a\u062a \u0639\u0644\u0649 \u062a\u0623\u062b\u064a\u0631\u0627\u062a \u0623\u0646\u0648\u0627\u0639 \u0627\u0644\u0623\u0634\u062c\u0627\u0631 \u0639\u0644\u0649 \u0627\u0644\u062a\u0631\u0628\u0629 \u0639\u0646 \u062a\u0623\u062b\u064a\u0631 \u0643\u0628\u064a\u0631 \u0639\u0644\u0649 \u0645\u062e\u0632\u0648\u0646 \u0627\u0644\u0643\u0631\u0628\u0648\u0646 \u0627\u0644\u0639\u0636\u0648\u064a \u0641\u064a \u0627\u0644\u062a\u0631\u0628\u0629 (SOC) \u0648\u062a\u0648\u0632\u064a\u0639 \u0627\u0644\u0643\u0631\u0628\u0648\u0646 (C) \u0628\u064a\u0646 \u0623\u0631\u0636\u064a\u0629 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\u0645\u062d\u0631\u0643\u0627\u062a \u0645\u0647\u0645\u0629 \u0644\u0644\u0645\u062e\u0632\u0648\u0646\u0627\u062a \u0648\u0627\u0644\u062a\u0648\u0632\u064a\u0639 \u0627\u0644\u0631\u0623\u0633\u064a \u0644\u0645\u062e\u0632\u0648\u0646 \u0627\u0644\u0643\u0631\u0628\u0648\u0646 \u0627\u0644\u0639\u0636\u0648\u064a \u0641\u064a \u0627\u0644\u062a\u0631\u0628\u0629 \u0628\u064a\u0646 \u0623\u0646\u0648\u0627\u0639 \u0627\u0644\u0623\u0634\u062c\u0627\u0631 \u0648\u0628\u064a\u0646 \u0646\u0648\u0639\u064a\u0646 \u0645\u0646 \u0627\u0644\u062c\u0630\u0648\u0631 \u0627\u0644\u0641\u0637\u0631\u064a\u0629 \u0627\u0644\u0645\u0631\u062a\u0628\u0637\u0629 \u0628\u0647\u0627.", "keywords": ["Biomass (ecology)", "Microbial population biology", "Fagus sylvatica", "Soil Science", "Plant Science", "Plant litter", "Agricultural and Biological Sciences", "Mycorrhizal Fungi and Plant Interactions", "Soil water", "Genetics", "Monoculture", "Forest floor", "Saproxylic Insect Ecology and Forest Management", "Biology", "Beech", "Soil organic matter", "Soil Fertility", "Ecology", "Bacteria", "Picea abies", "Botany", "Life Sciences", "04 agricultural and veterinary sciences", "Soil carbon", "Agronomy", "Insect Science", "FOS: Biological sciences", "0401 agriculture", " forestry", " and fisheries", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Nutrient"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2022.108754"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2022.108754", "name": "item", "description": "10.1016/j.soilbio.2022.108754", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2022.108754"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-09-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2022.108918", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:17:30Z", "type": "Journal Article", "created": "2022-12-22", "title": "Litter chemistry of common European tree species drives the feeding preference and consumption rate of soil invertebrates, and shapes the diversity and structure of gut and faecal microbiomes", "description": "Open AccessTerrestrial isopods and millipedes are key drivers of a litter decomposition in terrestrial ecosystems but the effects of litter chemistry on feeding preference and litter consumption rate as well as on the diversity and composition of gut and faecal microbiome still entails several challenges. We established a mesocosm experiment with terrestrial isopods (Oniscus asellus) and millipedes (Glomeris marginata) fed by leaf litter from six common European tree species (ash, maple, lime, beech, oak and Norway spruce) to reveal the effect of litter chemistry on consumption rate and feeding preference as well as on the compositions of gut and faecal microbiomes. The total percentage of consumed litter showed that O. asellus preferred nutrient-rich and labile-C litter of ash over more recalcitrant litter of oak, beech, and Norway spruce, while G. marginata preferred calcium-rich ash, maple and lime litter over beech and Norway spruce. Consumption of litter by O. asellus and G. marginata increased with concentrations of magnesium, sulphur and potassium but decreased with concentrations of iron, phosphorus, lignin, cellulose and TOC. The millipede G. marginata harboured higher bacterial OTU richness (73.5 \u00b1 12.5) than the isopod O. asellus (49.1 \u00b1 15.9), but fungal OTU richness was similar with 25.8 \u00b1 6.7 in O. asellus and 25.7 \u00b1 2.7 in G. marginata. In total, faeces of both animals hosted higher diversity than gut. In gut and faeces of O. asellus, the fungal OTU richness was highest for individuals fed by litter of Norway spruce, while lowest OTU richness was recorded for individuals fed by litter of more palatable ash. In contrast, the highest diversity of the fungal community in gut and faeces of G. marginata was recorded for individuals fed by palatable lime litter, while the lowest OTUs richness was recorded when millipedes were fed by maple and spruce. The structures of bacterial and fungal communities generally separated between O. asellus and G. marginata. The fungal community structure in gut and faeces differed between animals fed by different foliar litters, while the bacterial community structure mainly differed between gut and faeces regardless of the offered type of litter. The fungal community structure in gut and faeces of O. asellus and G. marginata were shaped by concentrations of magnesium, sulphur, lignin and cellulose. The bacterial communities in gut and faeces of both O. asellus and G. marginata were dominated by copiotrophic bacteria, while fungal communities were dominated by unspecified saprotrophs. Our study suggest that litter quality is a strong driver of feeding preference and consumption rates as well as composition of bacterial and fungal communities in gut and faeces of two species representing the main groups of litter feeding soil fauna in European forests.", "keywords": ["0301 basic medicine", "Genomic Insights into Social Insects and Symbiosis", "Plant Science", "Plant litter", "Agricultural and Biological Sciences", "03 medical and health sciences", "Biochemistry", " Genetics and Molecular Biology", "Litter", "Genetics", "Ecological Niche", "Biology", "Ecosystem", "Beech", "0303 health sciences", "Species Distribution Modeling and Climate Change Impacts", "Ecology", "Ecological Modeling", "Botany", "Life Sciences", "15. Life on land", "Plant-Parasitic Nematodes in Molecular Plant Pathology", "Detritus", "FOS: Biological sciences", "Detritivore", "Environmental Science", "Physical Sciences", "Species richness"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2022.108918"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2022.108918", "name": "item", "description": "10.1016/j.soilbio.2022.108918", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2022.108918"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-02-01T00:00:00Z"}}, {"id": "10.1016/j.tplants.2023.01.008", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:17:48Z", "type": "Journal Article", "created": "2023-02-27", "title": "Heritage genetics for adaptation to marginal soils in barley", "description": "Future crops need to be sustainable in the face of climate change. Modern barley varieties have been bred for high productivity and quality; however, they have suffered considerable genetic erosion, losing crucial genetic diversity. This renders modern cultivars vulnerable to climate change and stressful environments. We highlight the potential to tailor crops to a specific environment by utilising diversity inherent in an adapted landrace population. Tapping into natural biodiversity, while incorporating information about local environmental and climatic conditions, allows targeting of key traits and genotypes, enabling crop production in marginal soils. We outline future directions for the utilisation of genetic resources maintained in landrace collections to support sustainable agriculture through germplasm development via the use of genomics technologies and big data.", "keywords": ["Crops", " Agricultural", "0301 basic medicine", "EFFICIENCY", "genetic resilience", "IMPACT", "/dk/atira/pure/subjectarea/asjc/1100/1110", "630", "12. Responsible consumption", "diversity", "Soil", "03 medical and health sciences", "FUTURE", "MANGANESE DEFICIENCY", "PLANTS", "2. Zero hunger", "580", "0303 health sciences", "barley landraces", "Hordeum", "Agriculture", "15. Life on land", "LANDRACES", "Adaptation", " Physiological", "CULTIVARS", "CLIMATE", "Plant Breeding", "climate change", "marginal soil", "13. Climate action", "name=Plant Science", "local adaptation", "RESISTANCE"]}, "links": [{"href": "https://doi.org/10.1016/j.tplants.2023.01.008"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Trends%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.tplants.2023.01.008", "name": "item", "description": "10.1016/j.tplants.2023.01.008", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.tplants.2023.01.008"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-05-01T00:00:00Z"}}, {"id": "10.1017/s0021859618000084", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:17:54Z", "type": "Journal Article", "created": "2018-02-28", "title": "Forecasting potential evapotranspiration by combining numerical weather predictions and visible and near-infrared satellite images: an application in southern Italy", "description": "AbstractIrrigation according to reliable estimates of crop water requirements (CWR) is one of the key strategies to ensure long-term sustainability of irrigated agriculture. In southern Mediterranean regions, during the irrigation season, CWR is almost totally controlled by the potential evapotranspiration of the irrigated crop. An innovative system for forecasting crop potential evapotranspiration (ETp) has been implemented recently in the Campania region (southern Italy). The system produces ETp forecasts with a lead time of up to 5 days, by coupling the visible and near-infrared crop imagery with numerical weather prediction outputs of a limited area model. The forecasts are delivered to farmers with a simple and intuitive web app interface, which makes daily real-time ETp maps accessible from desktop computers, tablets and smartphones. Forecast performances were evaluated for maize fields of two farms in two irrigation seasons (2014\uffe2\uff80\uff932015). The mean absolute bias of the forecasted ETp was <0.3 mm/day and the RMSE was <0.6 mm/day, both for lead times up to 5 days.
", "keywords": ["2. Zero hunger", "Earth observation", "Crop water requirements", "0207 environmental engineering", "forecasting", "02 engineering and technology", "15. Life on land", "01 natural sciences", "numerical weather predictions", "13. Climate action", "potential evapotranspiration", "11. Sustainability", "Genetics", "Animal Science and Zoology", "Agronomy and Crop Science", "Crop water requirements; Earth observation; forecasting; numerical weather predictions; potential evapotranspiration; Animal Science and Zoology; Agronomy and Crop Science; Genetics", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1017/s0021859618000084"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Journal%20of%20Agricultural%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1017/s0021859618000084", "name": "item", "description": "10.1017/s0021859618000084", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1017/s0021859618000084"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-02-28T00:00:00Z"}}, {"id": "10.1017/s0021859617000193", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:17:54Z", "type": "Journal Article", "created": "2017-03-27", "title": "Maize\u2013Common Bean Intercropping To Optimize Maize-Based Crop Production", "description": "SUMMARYMaize (Zea maysL.)\uffe2\uff80\uff93common bean (Phaseolus vulgarisL.) intercropping is a recent practice in north-western Ethiopia and there is limited information on its productivity. A field experiment was conducted at South Achefer and Mecha in north-western Ethiopia during the 2012 and 2013 crop growing seasons to determine combinations of intercrop planting arrangement (IPA) with nitrogen (N) and phosphorus (P) rates for optimizing maize\uffe2\uff80\uff93common bean intercrop productivity and profitability. Treatments consisted of factorial combinations of two IPA (single row of common bean between maize rows and paired rows of common bean between paired rows of maize), two N rates (92 and 128 kg N/ha) and two P rates (20 and 40 kg P/ha). A sole crop maize with recommended fertilizer rate of 128/40 kg N/P/ha was used as a control treatment. The treatments were laid out in a randomized complete block design with three replications. Results indicated that land equivalent ratio was more than unity, and the intercrop system was 20% more productive relative to the sole crop. Maize equivalent yields were highest for most of the intercrop treatments relative to mono-crop maize with yield advantage of 14% from single row IPA with 128/20 kg N/P/ha. Single row IPA with 128/20 kg N/P/ha and paired row IPA with 92/20 kg N/P/ha increased financial returns by 16 and 8% relative to sole crop maize, respectively. Smallholder maize-based cropping of north-western Ethiopia could be nutritionally, agronomically and financially improved through maize\uffe2\uff80\uff93common bean intercropping of single row IPA with appropriate nutrient management.
", "keywords": ["2. Zero hunger", "0106 biological sciences", "0401 agriculture", " forestry", " and fisheries", "farming systems", "genetics", "04 agricultural and veterinary sciences", "15. Life on land", "crops", "maize", "01 natural sciences"], "contacts": [{"organization": "Alemayehu, A., Tamado, T., Nigussie, D., Yigzaw, D., Kinde, T., Wortmann, Charles S.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1017/s0021859617000193"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Journal%20of%20Agricultural%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1017/s0021859617000193", "name": "item", "description": "10.1017/s0021859617000193", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1017/s0021859617000193"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-03-27T00:00:00Z"}}, {"id": "10.1021/acs.jafc.3c04532", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:17:59Z", "type": "Journal Article", "created": "2023-10-05", "title": "Ultra-high Performance Liquid Chromatography\u2013Ion Mobility\u2013High-Resolution Mass Spectrometry to Evaluate the Metabolomic Response of Durum Wheat to Sustainable Treatments", "description": "Sustainable agriculture aims at achieving a healthy food production while reducing the use of fertilizers and greenhouse gas emissions using biostimulants and soil amendments. Untargeted metabolomics by ultra-high performance liquid chromatography-ion mobility-high-resolution mass spectrometry, operating in a high-definition MSE mode, was applied to investigate the metabolome of durum wheat in response to sustainable treatments, i.e., the addition of biochar, commercial plant growth promoting microbes, and their combination. Partial least squares-discriminant analysis provided a good discrimination among treatments with sensitivity, specificity, and a non-error rate close to 1. A total of 88 and 45 discriminant compounds having biological, nutritional, and technological implications were tentatively identified in samples grown in 2020 and 2021. The addition of biochar-biostimulants produced the highest up-regulation of lipids and flavonoids, with the glycolipid desaturation being the most impacted pathway, whereas carbohydrates were mostly down-regulated. The findings achieved suggest the safe use of the combined biochar-biostimulant treatment for sustainable wheat cultivation.", "keywords": ["2. Zero hunger", "Settore CHEM-01/A - Chimica analitica", "630", "Mass Spectrometry", "12. Responsible consumption", "ultra-high performance liquid chromatography\u2212high-resolution mass spectrometry ion mobility untargeted metabolomics multivariate data analysis durum wheat biostimulants soil amendments", "13. Climate action", "Settore AGRI-06/A - Genetica agraria", "615", "Metabolomics", "ultra-high performance liquid chromatography\u2013high-resolution mass spectrometry ion mobility untargeted metabolomics multivariate data analysis durum wheat biostimulants soil amendments", "Settore BIOS-10/A - Biologia cellulare e applicata", "Chromatography", " High Pressure Liquid", "Triticum"]}, "links": [{"href": "https://pubs.acs.org/doi/pdf/10.1021/acs.jafc.3c04532"}, {"href": "https://doi.org/10.1021/acs.jafc.3c04532"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Agricultural%20and%20Food%20Chemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1021/acs.jafc.3c04532", "name": "item", "description": "10.1021/acs.jafc.3c04532", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1021/acs.jafc.3c04532"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-10-05T00:00:00Z"}}, {"id": "10.1088/1748-9326/abfe8a", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:19:02Z", "type": "Journal Article", "created": "2021-05-06", "title": "Decreased soil moisture due to warming drives phylogenetic diversity and community transitions in the tundra", "description": "AbstractGlobal warming leads to drastic changes in the diversity and structure of Arctic plant communities. Studies of functional diversity within the Arctic tundra biome have improved our understanding of plant responses to warming. However, these studies still show substantial unexplained variation in diversity responses. Complementary to functional diversity, phylogenetic diversity has been useful in climate change studies, but has so far been understudied in the Arctic. Here, we use a 25 year warming experiment to disentangle community responses in Arctic plant phylogenetic \uffce\uffb2 diversity across a soil moisture gradient. We found that responses varied over the soil moisture gradient, where meadow communities with intermediate to high soil moisture had a higher magnitude of response. Warming had a negative effect on soil moisture levels in all meadow communities, however meadows with intermediate moisture levels were more sensitive. In these communities, soil moisture loss was associated with earlier snowmelt, resulting in community turnover towards a more heath-like community. This process of \uffe2\uff80\uff98heathification\uffe2\uff80\uff99 in the intermediate moisture meadows was driven by the expansion of ericoid and Betula shrubs. In contrast, under a more consistent water supply Salix shrub abundance increased in wet meadows. Due to its lower stature, palatability and decomposability, the increase in heath relative to meadow vegetation can have several large scale effects on the local food web as well as climate. Our study highlights the importance of the hydrological cycle as a driver of vegetation turnover in response to Arctic climate change. The observed patterns in phylogenetic \uffce\uffb2 diversity were often driven by contrasting responses of species of the same functional growth form, and could thus provide important complementary information. Thus, phylogenetic diversity is an important tool in disentangling tundra response to environmental change.Double digest restriction-site associated sequencing (ddRAD-seq) is a flexible and cost-effective strategy for providing in-depth insights into the genetic architecture of germplasm collections. Using this methodology, we investigated the genomic diversity of a panel of 288 diverse tomato (Solanum lycopersicumL.) accessions enriched in \uffe2\uff80\uff98da serbo\uffe2\uff80\uff99 (called \uffe2\uff80\uff98de penjar\uffe2\uff80\uff99 in Spain) long shelf life (LSL) materials (152 accessions) mostly originating from Italy and Spain. The rest of the materials originate from different countries and include landraces for fresh consumption, elite cultivars, heirlooms, and breeding lines. Apart from their LSL trait, \uffe2\uff80\uff98da serbo\uffe2\uff80\uff99 landraces are of remarkable interest for their resilience. We identified 32,799 high-quality SNPs, which were used for model ancestry population structure and non-parametric hierarchical clustering. Six genetic subgroups were revealed, clearly separating most \uffe2\uff80\uff98da serbo\uffe2\uff80\uff99 landraces, but also the Spanish germplasm, suggesting a subdivision of the population based on type and geographical provenance. Linkage disequilibrium (LD) in the collection decayed very rapidly within <5\uffe2\uff80\uff89kb. We then investigated SNPs showing contrasted minor frequency allele (MAF) in \uffe2\uff80\uff98da serbo\uffe2\uff80\uff99 materials, resulting in the identification of high frequencies in this germplasm of several mutations in genes related to stress tolerance and fruit maturation such asCTR1andJAR1. Finally, a mini-core collection of 58 accessions encompassing most of the diversity was selected for further exploitation of key traits. Our findings suggest the presence of a genetic footprint of the \uffe2\uff80\uff98da serbo\uffe2\uff80\uff99 germplasm selected in the Mediterranean basin. Moreover, we provide novel insights on LSL \uffe2\uff80\uff98da serbo\uffe2\uff80\uff99 germplasm as a promising source of alleles for tolerance to stresses.
", "keywords": ["0301 basic medicine", "2. Zero hunger", "GENETICA", "0303 health sciences", "03 medical and health sciences", "Genetic markers", "Genomics", "Plant breeding", "Article", "02.- Poner fin al hambre", " conseguir la seguridad alimentaria y una mejor nutrici\u00f3n", " y promover la agricultura sostenible"]}, "links": [{"href": "https://iris.cnr.it/bitstream/20.500.14243/451962/1/41438_2020_article_353.pdf"}, {"href": "https://www.nature.com/articles/s41438-020-00353-6.pdf"}, {"href": "https://doi.org/10.1038/s41438-020-00353-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Horticulture%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41438-020-00353-6", "name": "item", "description": "10.1038/s41438-020-00353-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41438-020-00353-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-09-01T00:00:00Z"}}, {"id": "10.1038/s41438-020-00395-w", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:18:20Z", "type": "Journal Article", "created": "2020-11-01", "title": "Morphoagronomic characterization and whole-genome resequencing of eight highly diverse wild and weedy S. pimpinellifolium and S. lycopersicum var. cerasiforme accessions used for the first interspecific tomato MAGIC population", "description": "AbstractThe wildSolanum pimpinellifolium(SP) and the weedyS. lycopersicumvar.cerasiforme(SLC) are largely unexploited genetic reservoirs easily accessible to breeders, as they are fully cross-compatible with cultivated tomato (S. lycopersicumvar.lycopersicum). We performed a comprehensive morphological and genomic characterization of four wild SP and four weedy SLC accessions, selected to maximize the range of variation of both taxa. These eight accessions are the founders of the first tomato interspecific multi-parent advanced generation inter-cross (MAGIC) population. The morphoagronomic characterization was carried out with 39 descriptors to assess plant, inflorescence, fruit and agronomic traits, revealing the broad range of diversity captured. Part of the morphological variation observed in SP was likely associated to the adaptation of the accessions to different environments, while in the case of SLC to both human activity and adaptation to the environment. Whole-genome resequencing of the eight accessions revealed over 12 million variants, ranging from 1.2 to 1.9 million variants in SLC and from 3.1 to 4.8 million in SP, being 46.3% of them (4,897,803) private variants. The genetic principal component analysis also confirmed the high diversity of SP and the complex evolutionary history of SLC. This was also reflected in the analysis of the potential footprint of common ancestors or old introgressions identified within and between the two taxa. The functional characterization of the variants revealed a significative enrichment of GO terms related to changes in cell walls that would have been negatively selected during domestication and breeding. The comprehensive morphoagronomic and genetic characterization of these accessions will be of great relevance for the genetic analysis of the first interspecific MAGIC population of tomato and provides valuable knowledge and tools to the tomato community for genetic and genomic studies and for breeding purposes.
", "keywords": ["0301 basic medicine", "2. Zero hunger", "GENETICA", "0303 health sciences", "03 medical and health sciences", "BOTANICA", "Article", "02.- Poner fin al hambre", " conseguir la seguridad alimentaria y una mejor nutrici\u00f3n", " y promover la agricultura sostenible"]}, "links": [{"href": "http://www.nature.com/articles/s41438-020-00395-w.pdf"}, {"href": "https://doi.org/10.1038/s41438-020-00395-w"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Horticulture%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41438-020-00395-w", "name": "item", "description": "10.1038/s41438-020-00395-w", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41438-020-00395-w"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-01T00:00:00Z"}}, {"id": "10.1038/nature02052", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:18:18Z", "type": "Journal Article", "created": "2003-10-08", "title": "Loss Of Omi Mitochondrial Protease Activity Causes The Neuromuscular Disorder Of Mnd2 Mutant Mice", "description": "The mouse mutant mnd2 (motor neuron degeneration 2) exhibits muscle wasting, neurodegeneration, involution of the spleen and thymus, and death by 40 days of age. Degeneration of striatal neurons, with astrogliosis and microglia activation, begins at around 3 weeks of age, and other neurons are affected at later stages. Here we have identified the mnd2 mutation as the missense mutation Ser276Cys in the protease domain of the nuclear-encoded mitochondrial serine protease Omi (also known as HtrA2 or Prss25). Protease activity of Omi is greatly reduced in tissues of mnd2 mice but is restored in mice rescued by a bacterial artificial chromosome transgene containing the wild-type Omi gene. Deletion of the PDZ domain partially restores protease activity to the inactive recombinant Omi protein carrying the Ser276Cys mutation, suggesting that the mutation impairs substrate access or binding to the active site pocket. Loss of Omi protease activity increases the susceptibility of mitochondria to induction of the permeability transition, and increases the sensitivity of mouse embryonic fibroblasts to stress-induced cell death. The neurodegeneration and juvenile lethality in mnd2 mice result from this defect in mitochondrial Omi protease.", "keywords": ["Male", "0301 basic medicine", "0303 health sciences", "Binding Sites", "Cell Death", "Science", "Homozygote", "Molecular Sequence Data", "Caseins", "Chromosome Mapping", "Mice", " Transgenic", "High-Temperature Requirement A Serine Peptidase 2", "Mitochondria", "Mitochondrial Proteins", "Mice", "Mice", " Neurologic Mutants", "03 medical and health sciences", "Animals", "Humans", "Calcium", "Female", "Amino Acid Sequence", "Cells", " Cultured", "Crosses", " Genetic"]}, "links": [{"href": "https://doi.org/10.1038/nature02052"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/nature02052", "name": "item", "description": "10.1038/nature02052", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/nature02052"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2003-10-01T00:00:00Z"}}, {"id": "10.1111/gcb.15496", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:19:26Z", "type": "Journal Article", "created": "2020-12-20", "title": "Topsoil organic matter build\u2010up in glacier forelands around the world", "description": "AbstractSince the last glacial maximum, soil formation related to ice\uffe2\uff80\uff90cover shrinkage has been one major sink of carbon accumulating as soil organic matter (SOM), a phenomenon accelerated by the ongoing global warming. In recently deglacierized forelands, processes of SOM accumulation, including those that control carbon and nitrogen sequestration rates and biogeochemical stability of newly sequestered carbon, remain poorly understood. Here, we investigate the build\uffe2\uff80\uff90up of SOM during the initial stages (up to 410\uffc2\uffa0years) of topsoil development in 10 glacier forelands distributed on four continents. We test whether the net accumulation of SOM on glacier forelands (i) depends on the time since deglacierization and local climatic conditions (temperature and precipitation); (ii) is accompanied by a decrease in its stability and (iii) is mostly due to an increasing contribution of organic matter from plant origin. We measured total SOM concentration (carbon, nitrogen), its relative hydrogen/oxygen enrichment, stable isotopic (13C, 15N) and carbon functional groups (C\uffe2\uff80\uff90H, C=O, C=C) compositions, and its distribution in carbon pools of different thermal stability. We show that SOM content increases with time and is faster on forelands experiencing warmer climates. The build\uffe2\uff80\uff90up of SOM pools shows consistent trends across the studied soil chronosequences. During the first decades of soil development, the low amount of SOM is dominated by a thermally stable carbon pool with a small and highly thermolabile pool. The stability of SOM decreases with soil age at all sites, indicating that SOM storage is dominated by the accumulation of labile SOM during the first centuries of soil development, and suggesting plant carbon inputs to soil (SOM depleted in nitrogen, enriched in hydrogen and in aromatic carbon). Our findings highlight the potential vulnerability of SOM stocks from proglacial areas to decomposition and suggest that their durability largely depends on the relative contribution of carbon inputs from plants.
", "keywords": ["[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics", "550", "Nitrogen", "Chronosequence", "551", "01 natural sciences", "[SDV.BV.BOT] Life Sciences [q-bio]/Vegetal Biology/Botanics", "Soil", "soil organic matter", "carbon stability; chronosequence; climate sensitivity; soil organic matter; topsoil development; Carbon; Nitrogen; Temperature; Ice Cover; Soil", "[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics", " Phylogenetics and taxonomy", "[SDV.EE.ECO] Life Sciences [q-bio]/Ecology", " environment/Ecosystems", "Ice Cover", "topsoil development", "Carbon stability", "0105 earth and related environmental sciences", "2. Zero hunger", "Soil organic matter", "Temperature", "Phylogenetics and taxonomy", "04 agricultural and veterinary sciences", "[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics", "15. Life on land", "Climate sensitivity", "Primary Research Articles", "Carbon", "chronosequence", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "13. Climate action", "[SDV.EE.ECO]Life Sciences [q-bio]/Ecology", "[SDE]Environmental Sciences", "Topsoil development", "climate sensitivity", "carbon stability; chronosequence; climate sensitivity; soil organic matter; topsoil development;", "0401 agriculture", " forestry", " and fisheries", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "environment/Ecosystems", "carbon stability"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/851691/2/khedim%202021%20submitted.pdf"}, {"href": "https://air.unimi.it/bitstream/2434/851691/3/khedim%202021%20Global%20Change%20Biol.pdf"}, {"href": "https://boa.unimib.it/bitstream/10281/300214/2/10281-300214_VoR.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.15496"}, {"href": "https://doi.org/10.1111/gcb.15496"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.15496", "name": "item", "description": "10.1111/gcb.15496", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.15496"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-01-16T00:00:00Z"}}, {"id": "10.1038/s41396-021-01064-z", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:18:20Z", "type": "Journal Article", "created": "2021-07-27", "title": "Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities", "description": "AbstractNitrification, the oxidation of ammonia to nitrate, is an essential process in the biogeochemical nitrogen cycle. The first step of nitrification, ammonia oxidation, is performed by three, often co-occurring guilds of chemolithoautotrophs: ammonia-oxidizing bacteria (AOB), archaea (AOA), and complete ammonia oxidizers (comammox). Substrate kinetics are considered to be a major niche-differentiating factor between these guilds, but few AOA strains have been kinetically characterized. Here, the ammonia oxidation kinetic properties of 12 AOA representing all major cultivated phylogenetic lineages were determined using microrespirometry. Members of the genus Nitrosocosmicus have the lowest affinity for both ammonia and total ammonium of any characterized AOA, and these values are similar to previously determined ammonia and total ammonium affinities of AOB. This contrasts previous assumptions that all AOA possess much higher substrate affinities than their comammox or AOB counterparts. The substrate affinity of ammonia oxidizers correlated with their cell surface area to volume ratios. In addition, kinetic measurements across a range of pH values supports the hypothesis that\uffe2\uff80\uff94like for AOB\uffe2\uff80\uff94ammonia and not ammonium is the substrate for the ammonia monooxygenase enzyme of AOA and comammox. Together, these data will facilitate predictions and interpretation of ammonia oxidizer community structures and provide a robust basis for establishing testable hypotheses on competition between AOB, AOA, and comammox.Warming in the Arctic accelerates thawing of permafrost-affected soils, which leads to a release of greenhouse gases to the atmosphere. We do not know whether permafrost thaw also releases non-methane volatile organic compounds that can contribute to both negative and positive radiative forcing on climate. Here we show using proton transfer reaction\uffe2\uff80\uff93time of flight\uffe2\uff80\uff93mass spectrometry that substantial amounts of ethanol and methanol and in total 316 organic ions were released from Greenlandic permafrost soils upon thaw in laboratory incubations. We demonstrate that the majority of this release is taken up in the active layer above. In an experiment using 14C-labeled ethanol and methanol, we demonstrate that these compounds are consumed by microorganisms. Our findings highlight that the thawing permafrost soils are not only a considerable source of volatile organic compounds but also that the active layer regulates their release into the atmosphere.
", "keywords": ["0301 basic medicine", "Ethanol", "Science", "Climate", "Methanol", "General Biochemistry", "Genetics and Molecular Biology", "Q", "General Physics and Astronomy", "Permafrost", "General Chemistry", "15. Life on land", "01 natural sciences", "Article", "03 medical and health sciences", "13. Climate action", "11. Sustainability", "SDG 13 - Climate Action", "Soil Microbiology", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.nature.com/articles/s41467-018-05824-y.pdf"}, {"href": "https://doi.org/10.1038/s41467-018-05824-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Communications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41467-018-05824-y", "name": "item", "description": "10.1038/s41467-018-05824-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41467-018-05824-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-08-24T00:00:00Z"}}, {"id": "10.1038/s41467-018-05980-1", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:18:20Z", "type": "Journal Article", "created": "2018-08-29", "title": "Land use driven change in soil pH affects microbial carbon cycling processes", "description": "AbstractSoil microorganisms act as gatekeepers for soil\uffe2\uff80\uff93atmosphere carbon exchange by balancing the accumulation and release of soil organic matter. However, poor understanding of the mechanisms responsible hinders the development of effective land management strategies to enhance soil carbon storage. Here we empirically test the link between microbial ecophysiological traits and topsoil carbon content across geographically distributed soils and land use contrasts. We discovered distinct pH controls on microbial mechanisms of carbon accumulation. Land use intensification in low-pH soils that increased the pH above a threshold (~6.2) leads to carbon loss through increased decomposition, following alleviation of acid retardation of microbial growth. However, loss of carbon with intensification in near-neutral pH soils was linked to decreased microbial biomass and reduced growth efficiency that was, in turn, related to trade-offs with stress alleviation and resource acquisition. Thus, less-intensive management practices in near-neutral pH soils have more potential for carbon storage through increased microbial growth efficiency, whereas in acidic soils, microbial growth is a bigger constraint on decomposition rates.Humans modify ecosystems and biodiversity worldwide, with negative consequences for ecosystem functioning. Promoting plant diversity is increasingly suggested as a mitigation strategy. However, our mechanistic understanding of how plant diversity affects the diversity of heterotrophic consumer communities remains limited. Here, we disentangle the relative importance of key components of plant diversity as drivers of herbivore, predator, and parasitoid species richness in experimental forests and grasslands. We find that plant species richness effects on consumer species richness are consistently positive and mediated by elevated structural and functional diversity of the plant communities. The importance of these diversity components differs across trophic levels and ecosystems, cautioning against ignoring the fundamental ecological complexity of biodiversity effects. Importantly, plant diversity effects on higher trophic-level species richness are in many cases mediated by modifications of consumer abundances. In light of recently reported drastic declines in insect abundances, our study identifies important pathways connecting plant diversity and consumer diversity across ecosystems.
", "keywords": ["0106 biological sciences", "2. Zero hunger", "570", "/dk/atira/pure/core/keywords/nachhaltigkeitswissenschaft; name=Sustainability Science", "Science", "/dk/atira/pure/subjectarea/asjc/1600; name=Chemistry(all)", "Q", "/dk/atira/pure/subjectarea/asjc/1300; name=Biochemistry", " Genetics and Molecular Biology(all)", "634", "Biodiversity", "/dk/atira/pure/core/keywords/biology; name=Ecosystems Research", "Plants", "15. Life on land", "/dk/atira/pure/subjectarea/asjc/1000; name=General", "01 natural sciences", "Article", "ddc:", "/dk/atira/pure/subjectarea/asjc/3100; name=Physics and Astronomy(all)", "Species Specificity", "Animals", "14. Life underwater", "Arthropods"]}, "links": [{"href": "https://www.nature.com/articles/s41467-019-09448-8.pdf"}, {"href": "https://doi.org/10.1038/s41467-019-09448-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Communications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41467-019-09448-8", "name": "item", "description": "10.1038/s41467-019-09448-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41467-019-09448-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-03-29T00:00:00Z"}}, {"id": "10.1038/s41467-019-14197-9", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:18:21Z", "type": "Journal Article", "created": "2020-01-24", "title": "High-quality genome sequence of white lupin provides insight into soil exploration and seed quality", "description": "AbstractWhite lupin (Lupinus albus L.) is an annual crop cultivated for its protein-rich seeds. It is adapted to poor soils due to the production of cluster roots, which are made of dozens of determinate lateral roots that drastically improve soil exploration and nutrient acquisition (mostly phosphate). Using long-read sequencing technologies, we provide a high-quality genome sequence of a cultivated accession of white lupin (2n\uffe2\uff80\uff89=\uffe2\uff80\uff8950, 451\uffe2\uff80\uff89Mb), as well as de novo assemblies of a landrace and a wild relative. We describe a modern accession displaying increased soil exploration capacity through early establishment of lateral and cluster roots. We also show how seed quality may have been impacted by domestication in term of protein profiles and alkaloid content. The availability of a high-quality genome assembly together with companion genomic and transcriptomic resources will enable the development of modern breeding strategies to increase and stabilize white lupin yield.
", "keywords": ["Repetitive Sequences", " Nucleic Acid/genetics", "0301 basic medicine", "[SDV]Life Sciences [q-bio]", "Plant Roots/genetics", "Gene Dosage", "Plant Science", "Crop", "Alkaloids/chemistry", "Plant Roots", "Gene", "Repetitive Sequences", "630", "Agricultural and Biological Sciences", "Domestication", "Soil", "Models", "Symbiotic Nitrogen Fixation in Legumes", "Gene Duplication", "[SDV.BV] Life Sciences [q-bio]/Vegetal Biology", "http://aims.fao.org/aos/agrovoc/c_3224", "Plant Proteins/metabolism", "Plant Proteins", "2. Zero hunger", "0303 health sciences", "Genome", "Q", "http://aims.fao.org/aos/agrovoc/c_27583", "Life Sciences", "Transcriptome/genetics", "http://aims.fao.org/aos/agrovoc/c_92382", "Polymorphism", " Single Nucleotide/genetics", "Lupinus", "[SDV] Life Sciences [q-bio]", "Protein Crop", "Seeds", "http://aims.fao.org/aos/agrovoc/c_5956", "White (mutation)", "Single Nucleotide/genetics", "Sequence Analysis", "Genome", " Plant", "expression des g\u00e8nes", "http://aims.fao.org/aos/agrovoc/c_4464", "Synteny/genetics", "Evolution", "Lupin Seeds", "Science", "Centromere", "Lupinus/genetics", "Polymorphism", " Single Nucleotide", "Article", "g\u00e9nomique", "Evolution", " Molecular", "Evolution and Nutritional Properties of Lupin Seeds", "physiologie v\u00e9g\u00e9tale", "03 medical and health sciences", "Alkaloids", "Genetic", "Nucleic Acid/genetics", "Seeds/physiology", "Centromere/genetics", "Genetics", "[SDV.BV]Life Sciences [q-bio]/Vegetal Biology", "Polymorphism", "Biology", "Ecology", " Evolution", " Behavior and Systematics", "Repetitive Sequences", " Nucleic Acid", "Sequence assembly", "http://aims.fao.org/aos/agrovoc/c_25189", "Ecotype", "Models", " Genetic", "g\u00e9nome", "Botany", "Molecular", "Genetic Variation", "Molecular Sequence Annotation", "Plant", "DNA", "Sequence Analysis", " DNA", "s\u00e9quence nucl\u00e9otidique", "15. Life on land", "http://aims.fao.org/aos/agrovoc/c_27527", "Agronomy", "Plant Leaves", "Evolution and Ecology of Endophyte-Grass Symbiosis", "Lupinus albus", "FOS: Biological sciences", "Genomic Structural Variation", "Plant Leaves/metabolism", "Gene expression", "Transcriptome", "am\u00e9lioration des plantes"]}, "links": [{"href": "https://www.nature.com/articles/s41467-019-14197-9.pdf"}, {"href": "https://doi.org/10.1038/s41467-019-14197-9"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Communications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41467-019-14197-9", "name": "item", "description": "10.1038/s41467-019-14197-9", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41467-019-14197-9"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-01-24T00:00:00Z"}}, {"id": "10.1038/s41467-022-29161-3", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:18:21Z", "type": "Journal Article", "created": "2022-03-17", "title": "Structure and function of the soil microbiome underlying N2O emissions from global wetlands", "description": "AbstractWetland soils are the greatest source of nitrous oxide (N2O), a critical greenhouse gas and ozone depleter released by microbes. Yet, microbial players and processes underlying the N2O emissions from wetland soils are poorly understood. Using in situ N2O measurements and by determining the structure and potential functional of microbial communities in 645 wetland soil samples globally, we examined the potential role of archaea, bacteria, and fungi in nitrogen (N) cycling and N2O emissions. We show that N2O emissions are higher in drained and warm wetland soils, and are correlated with functional diversity of microbes. We further provide evidence that despite their much lower abundance compared to bacteria, nitrifying archaeal abundance is a key factor explaining N2O emissions from wetland soils globally. Our data suggest that ongoing global warming and intensifying environmental change may boost archaeal nitrifiers, collectively transforming wetland soils to a greater source of N2O.Diversified cropping systems, especially those including legumes, have been proposed to enhance food production with reduced inputs and environmental impacts. However, the impact of legume pre-crops on main crop yield and its drivers has never been systematically investigated in a global context. Here, we synthesize 11,768 yield observations from 462 field experiments comparing legume-based and non-legume cropping systems and show that legumes enhanced main crop yield by 20%. These yield advantages decline with increasing N fertilizer rates and crop diversity of the main cropping system. The yield benefits are consistent among main crops (e.g., rice, wheat, maize) and evident across pedo-climatic regions. Moreover, greater yield advantages (32% vs. 7%) are observed in low- vs. high-yielding environments, suggesting legumes increase crop production with low inputs (e.g., in Africa or organic agriculture). In conclusion, our study suggests that legume-based rotations offer a critical pathway for enhancing global crop production, especially when integrated into low-input and low-diversity agricultural systems.Legume-rhizobium signaling during establishment of symbiotic nitrogen fixation restricts rhizobium colonization to specific cells. A limited number of root hair cells allow infection threads to form, and only a fraction of the epidermal infection threads progress to cortical layers to establish functional nodules. Here we use single-cell analysis to define the epidermal and cortical cell populations that respond to and facilitate rhizobium infection. We then identify high-confidence nodulation gene candidates based on their specific expression in these populations, pinpointing genes stably associated with infection across genotypes and time points. We show that one of these, which we name SYMRKL1, encodes a protein with an ectodomain predicted to be nearly identical to that of SYMRK and is required for normal infection thread formation. Our work disentangles cellular processes and transcriptional modules that were previously confounded due to lack of cellular resolution, providing a more detailed understanding of symbiotic interactions.Although the role played by phylogeny in the assembly of plant communities remains as a priority to complete the theory of species coexistence, experimental evidence is lacking. It is still unclear to what extent phylogenetic diversity is a driver or a consequence of species assembly processes. We experimentally explored how phylogenetic diversity can drive the community level responses to drought conditions in annual plant communities. We manipulated the initial phylogenetic diversity of the assemblages and the water availability in a common garden experiment with two irrigation treatments: average natural rainfall and drought, formed with annual plant species of gypsum ecosystems of Central Spain. We recorded plant survival and the numbers of flowering and fruiting plants per species in each assemblage. GLMMs were performed for the proportion of surviving, flowering, fruiting plants per species and for total proportion of surviving species and plants per pot. In water limited conditions, high phylogenetic diversity favored species coexistence over time with higher plant survival and more flowering and fruiting plants per species and more species and plants surviving per pot. Our results agree with the existence of niche complementarity and the convergence of water economy strategies as major mechanisms for promoting species coexistence in plant assemblages in semiarid Mediterranean habitats. Our findings point to high phylogenetic diversity among neighboring plants as a plausible feature underpinning the coexistence of species, because the success of each species in terms of surviving and producing offspring in drought conditions was greater when the initial phylogenetic diversity was higher. Our study is a step forward to understand how phylogenetic relatedness is connected to the mechanisms determining the maintenance of biodiversity.