{"type": "FeatureCollection", "features": [{"id": "10.1007/s11104-022-05508-z", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-25T16:16:26Z", "type": "Journal Article", "created": "2022-06-22", "title": "Harnessing belowground processes for sustainable intensification of agricultural systems", "description": "Abstract <p>Increasing food demand coupled with climate change pose a great challenge to agricultural systems. In this review we summarize recent advances in our knowledge of how plants, together with their associated microbiota, shape rhizosphere processes. We address (molecular) mechanisms operating at the plant\uffe2\uff80\uff93microbe-soil interface and aim to link this knowledge with actual and potential avenues for intensifying agricultural systems, while at the same time reducing irrigation water, fertilizer inputs and pesticide use. Combining in-depth knowledge about above and belowground plant traits will not only significantly advance our mechanistic understanding of involved processes but also allow for more informed decisions regarding agricultural practices and plant breeding. Including belowground plant-soil-microbe interactions in our breeding efforts will help to select crops resilient to abiotic and biotic environmental stresses and ultimately enable us to produce sufficient food in a more sustainable agriculture in the upcoming decades.</p", "keywords": ["0301 basic medicine", "BIOLOGICAL NITRIFICATION INHIBITION", "PHOSPHATE SOLUBILIZING BACTERIA", "Plant-plant interaction", "Rhizobiome", "MEDIATED PH CHANGES", "Review Article", "Plant health", "MEMBRANE H+-ATPASE", "12. Responsible consumption", "03 medical and health sciences", "Soil health", "Soil structure", "C sequestration", "SDG 13 - Climate Action", "SDG 2 \u2013 Kein Hunger", "106026 Ecosystem research", "Plant nutrition", "SDG 2 - Zero Hunger", "2. Zero hunger", "0303 health sciences", "Water availability", "Root exudation", "JASMONIC ACID", "15. Life on land", "Microbes", "Intercropping", "106026 \u00d6kosystemforschung", "PLANT-GROWTH", "13. Climate action", "ROOT BORDER CELLS", "SDG 13 \u2013 Ma\u00dfnahmen zum Klimaschutz", "C cycling", "INNATE IMMUNITY", "NITROGEN-FIXATION", "ORGANIC-ACIDS"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1007/s11104-022-05508-z.pdf"}, {"href": "https://doi.org/10.1007/s11104-022-05508-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-022-05508-z", "name": "item", "description": "10.1007/s11104-022-05508-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-022-05508-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-06-22T00:00:00Z"}}, {"id": "353a9209757a20fbbdf1409d5458e66d", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-25T16:34:06Z", "type": "Report", "title": "Autoinflammatory Diseases: Germline vs. Somatic Mosaic Variations", "description": "Background/Objectives:The study primarily investigates somatic mosaic variations within systemic autoinflammatorydiseases (SAID) genes and their correlation with disease phenotypes, specifically focusingon variations in NLRP3 and TNFRSF1A leading to NLRP3-AIDs and TRAPS (Tumornecrosis factor-Receptor-Associated Periodic Syndrome) respectively.Methods:From 2018 to 2023, deep-targeted NGS was used to analyze the leukocyte DNAs of 800patients using a SAID gene panel. All mosaic variations in SAID genes from PubMed andInfevers databases were reviewed.Results:In NLRP3, 9 mosaic variations were identified in 12 independent patients, along with 10germline variations in 10 patients. The literature reports 34 mosaic and 88 germline NLRP3variations.Phenotype: genotype correlations suggest that NLRP3 variations found only somatically maybe incompatible with life if present germinally, while variations found only in germinal statecould be asymptomatic in mosaic state.In TNFRSF1A, two mosaic variations were found in three patients. The literature reports onlythree other mosaic variations. No obvious difference in disease severity between germlineand mosaic variations has been observed.Very few mosaic variations have been reported in the literature in other SAID genes: NLRC4(n=4), STING1 (n=2), NOD2 (n=2), and JAK1 (n=1), precluding any genotype: phenotypecorrelation studies.Most of mosaic variations identified in SAID genes were found to be widely distributed acrossdifferent tissues.Conclusion:The study underscores the high frequency of mosaic variations in NLRP3-AIDs andemphasizes the symptomatic nature of mosaic variations, even at very low allele frequencies(below 5%), potentially leading to false-negative diagnostic tests without deep sequencing", "keywords": ["[SDV.GEN.GH] Life Sciences [q-bio]/Genetics/Human genetics", "[SDV.IMM.II] Life Sciences [q-bio]/Immunology/Innate immunity"], "contacts": [{"organization": "Assrawi, Eman, Khouri, Elma, Louvrier, Camille, Piterboth, William, Le Moal, Florence, Diab, Farah, Daskalopoulou, Aphrodite, Mani, Rahma, Brandao, Quentin, Levergeois, Romain, Arenas, Angela, Legendre, Marie, Karabina, Sonia, Amselem, Serge, Giurgea, Irina,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/353a9209757a20fbbdf1409d5458e66d"}, {"rel": "self", "type": "application/geo+json", "title": "353a9209757a20fbbdf1409d5458e66d", "name": "item", "description": "353a9209757a20fbbdf1409d5458e66d", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/353a9209757a20fbbdf1409d5458e66d"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "PMC9579094", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-25T16:37:26Z", "type": "Journal Article", "created": "2022-06-22", "title": "Harnessing belowground processes for sustainable intensification of agricultural systems", "description": "Abstract <p>Increasing food demand coupled with climate change pose a great challenge to agricultural systems. 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