{"type": "FeatureCollection", "features": [{"id": "10.1007/s10646-011-0619-z", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:15:04Z", "type": "Journal Article", "created": "2011-03-04", "title": "Investigations Of Responses To Metal Pollution In Land Snail Populations (Cantareus Aspersus And Cepaea Nemoralis) From A Smelter-Impacted Area", "description": "A cross-transplantation field experiment was performed to investigate about possible adaptation/acclimatization to metal pollution in common garden snail Cantareus aspersus (ex-Helix aspersa) and brown-lipped grove snail Cepaea nemoralis populations. Adults were collected from an area surrounding a former smelter (ME), highly polluted by trace metals (TMs) for decades, and from an unpolluted site (BE). Subadults of first generation (F1) were exposed in microcosms in a 28-day kinetic study. Four exposure sites were chosen around the smelter along a soil pollution gradient (vegetation and soil otherwise comparable). Bioaccumulation in snail soft tissues globally increased with soil contamination, with Cd, Pb and Zn concentrations reaching 271, 187, 5527\u00a0\u03bcg\u00a0g(-1), respectively. Accumulation kinetic patterns were similar between snail species but C. nemoralis showed greater TM levels than C. aspersus. Some inter-population differences were revealed in TM accumulation (bioaccumulation factors, accumulation kinetics) but did not suggest consistent adaptive responses. We did not detect negative effects of TM exposure on snail condition (body weight, shell size, shell weight). ME C. aspersus snails produced heavier shells than BE snails under exposure to TMs at the highest level, suggesting an adaptive response. The protocol used in this study, however, did not allow unambiguously distinguishing whether this response was due to genetic adaptation or to maternal effects. Abnormal but reversible shell development of adult ME C. nemoralis suggested physiological acclimatization. Differences in responses to TMs between populations are observed for conchological parameters, not for bioaccumulation, with different strategies according to the species (acclimatization or adaptation/maternal effects).", "keywords": ["550", "invertebrate", "Snails", "590", "0211 other engineering and technologies", "02 engineering and technology", "heavy metal", "Adaptation", " Physiological", "01 natural sciences", "Kinetics", "bioaccumulation", "Models", " Chemical", "Metals", "13. Climate action", "adaptive response", "Metallurgy", "Animals", "Body Size", "Soil Pollutants", "[SDE.ES]Environmental Sciences/Environment and Society", "Environmental Monitoring", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1007/s10646-011-0619-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecotoxicology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s10646-011-0619-z", "name": "item", "description": "10.1007/s10646-011-0619-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s10646-011-0619-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-03-03T00:00:00Z"}}, {"id": "10.1016/j.jaap.2018.11.019", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:16:52Z", "type": "Journal Article", "created": "2018-11-16", "title": "Heterogeneous kinetics of timber charring at the microscale", "description": "Abstract   Timber is becoming a popular construction material even for high-rise buildings despite its poorly understood fire behaviour. In a fire, timber\u2014a natural polymer\u2014degrades in the thermochemical process of charring, causing it to lose structural strength. In spite of significant research on the physics of charring, the chemical kinetics\u2014reactions and kinetic parameters for pyrolysis and oxidation\u2014remains a scientific challenge to model accurately. Current kinetic models are either computationally too expensive or neglect key chemical pathways. Here we derive a new appropriate kinetic model for fire science at the microscale using a novel methodology. First, we built a kinetic model for each component of timber (cellulose, hemicellulose, and lignin) from literature studies and experiments of the components. Then, we combined these three models into one kinetic model (8 reactions, 8 chemical species) for timber. This approach accounts for chemical differences among timber species. However, the timber model is only able to reproduce the trend in the experiments when literature parameters are used. Using multi-objective inverse modelling, we extract a new set of optimised kinetic parameters from 16 high-quality experiments from the literature. The novel optimised kinetic model is able to reproduce these 16 and a further 64 (blind predictions) experiments nearly within the experimental uncertainty, spanning different heating rates (1\u201360\u2009K/min), oxygen concentrations (0\u201360 %), and even isothermal experiments (220\u2013300\u2009\u00b0C). Furthermore, the model outperforms current kinetic models for fire science in accuracy across a wide range of conditions without an increase in complexity. Incorporated into a model of heat and mass transfer, this new and optmised kinetic model could improve the understanding of timber burning and has the potenial to lead to safer designs of timber buildings.", "keywords": ["Technology", "Engineering", " Chemical", "Energy & Fuels", "THERMOGRAVIMETRIC ANALYSIS", "Charring", "0904 Chemical Engineering", "Chemical", "Timber", "02 engineering and technology", "WOOD", "7. Clean energy", "0201 civil engineering", "REACTION-MECHANISMS", "COMBUSTION", "Engineering", "0202 electrical engineering", " electronic engineering", " information engineering", "Biomass", "Science & Technology", "Energy", "Chemistry", " Analytical", "FAST BIOMASS PYROLYSIS", "CELLULOSE PYROLYSIS", "Analytical", "Fire", "THERMAL-DECOMPOSITION", "620", "MODEL", "Chemistry", "Kinetics", "13. Climate action", "Physical Sciences", "INTRINSIC KINETICS", "DEGRADATION BEHAVIOR", "0301 Analytical Chemistry", "Pyrolysis"]}, "links": [{"href": "https://doi.org/10.1016/j.jaap.2018.11.019"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Analytical%20and%20Applied%20Pyrolysis", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jaap.2018.11.019", "name": "item", "description": "10.1016/j.jaap.2018.11.019", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jaap.2018.11.019"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-03-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2018.01.019", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:16:10Z", "type": "Journal Article", "created": "2018-01-08", "title": "Toxicokinetics of Zn and Cd in the earthworm Eisenia andrei exposed to metal-contaminated soils under different combinations of air temperature and soil moisture content", "description": "This study evaluated how different combinations of air temperature (20\u202f\u00b0C and 25\u202f\u00b0C) and soil moisture content (50% and 30% of the soil water holding capacity, WHC), reflecting realistic climate change scenarios, affect the bioaccumulation kinetics of Zn and Cd in the earthworm Eisenia andrei. Earthworms were exposed for 21\u202fd to two metal-contaminated soils (uptake phase), followed by 21\u202fd incubation in non-contaminated soil (elimination phase). Body Zn and Cd concentrations were checked in time and metal uptake (k1) and elimination (k2) rate constants determined; metal bioaccumulation factor (BAF) was calculated as k1/k2. Earthworms showed extremely fast uptake and elimination of Zn, regardless of the exposure level. Climate conditions had no major impacts on the bioaccumulation kinetics of Zn, although a tendency towards lower k1 and k2 values was observed at 25\u00a0\u00b0C\u00a0+\u00a030% WHC. Earthworm Cd concentrations gradually increased with time upon exposure to metal-contaminated soils, especially at 50% WHC, and remained constant or slowly decreased following transfer to non-contaminated soil. Different combinations of air temperature and soil moisture content changed the bioaccumulation kinetics of Cd, leading to higher k1 and k2 values for earthworms incubated at 25\u00a0\u00b0C\u00a0+\u00a050% WHC and slower Cd kinetics at 25\u00a0\u00b0C\u00a0+\u00a030% WHC. This resulted in greater BAFs for Cd at warmer and drier environments which could imply higher toxicity risks but also of transfer of Cd within the food chain under the current global warming perspective.", "keywords": ["Soil invertebrates", "Bioavailability", "Climate Change", "0211 other engineering and technologies", "02 engineering and technology", "Global Warming", "01 natural sciences", "Soil", "Metals", " Heavy", "SDG 13 - Climate Action", "Climate change", "Animals", "Soil Pollutants", "Oligochaeta", "0105 earth and related environmental sciences", "2. Zero hunger", "Triazines", "Temperature", "Water", "Bioaccumulation", "Mining wastes", "Toxicokinetics", "Zinc", "Heavy metals", "Metals", "13. Climate action", "Environmental Pollution", "Cadmium"]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2018.01.019"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2018.01.019", "name": "item", "description": "10.1016/j.chemosphere.2018.01.019", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2018.01.019"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-04-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2008.07.056", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:16:09Z", "type": "Journal Article", "created": "2008-10-01", "title": "Integration Of Toxicological And Chemical Tools To Assess The Bioavailability Of Metals And Energetic Compounds In Contaminated Soils", "description": "Bioavailability is critical for understanding effects that might result from exposure of biota to contaminated soils. Soils from military range and training areas (RTAs) are contaminated principally by energetic materials (EM) and metals. Their chemical characteristics are relatively well known and toxicity assessment of soils from RTAs are in some cases available. However, bioavailability on these sites needs to be comprehensively characterized. A holistic approach to bioavailability, incorporating both chemical and earthworm toxicological indicators, was applied to soils from an anti-tank firing range at a Canadian Forces Base. Results showed that HMX and the metals Zn, Pb, Bi and Cd, though not consistently the prevailing toxicants, were the most accessible to earthworms. Some metals (notably Cu, Zn, Cr and Bi) were also accumulated in earthworm tissue but those were not necessarily expected given their bioaccessibility (i.e., the chemical availability of contaminants in the environment for the organisms) at the beginning of the exposure. The tested soils impaired earthworm reproduction and reduced adult growth. Measurement of selected sublethal parameters indicated that lysosomal integrity (determined as the neutral red retention time--NRRT) was decreased, while elevated superoxide dismutase (SOD) activity suggested that earthworms experienced oxidative stress. The correspondence between the NRRT and metal contamination pattern suggested that metals may be the main cause of lysosomal disruption in EM-contaminated soils. The approach to bioavailability appraisal adopted in this case appears to be a promising practice for site-specific assessment of contaminated land.", "keywords": ["zinc/metabolism/pharmacokinetics/toxicity", "assessment", "metals", "Biological Availability", "lead/metabolism/pharmacokinetics/toxicity", "01 natural sciences", "biological availability", "soil pollutants/metabolism/pharmacokinetics/toxicity", "Animals", "Soil Pollutants", "bismuth/metabolism/pharmacokinetics/toxicity", "Oligochaeta", "oligochaeta/rug effects/growth & development/metabolism", "soils", "0105 earth and related environmental sciences", "metals/metabolism/pharmacokinetics/ toxicity", "explosives", "04 agricultural and veterinary sciences", "bioaccessibility", "6. Clean water", "Zinc", "Lead", "Metals", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "cadmium/metabolism/pharmacokinetics/toxicity", "bioavailability", "Bismuth", "Cadmium"], "contacts": [{"organization": "\u00c9meline Valton, Bertin Trottier, Aurelie Auroy, Aurelie Auroy, Yann Berthelot, Pierre Yves Robidoux, Pierre Yves Robidoux,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2008.07.056"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2008.07.056", "name": "item", "description": "10.1016/j.chemosphere.2008.07.056", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2008.07.056"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-12-01T00:00:00Z"}}, {"id": "10.1016/j.agee.2013.06.016", "type": "Feature", "geometry": null, "properties": {"license": "unspecified", "updated": "2026-07-27T16:15:44Z", "type": "Journal Article", "created": "2013-07-25", "title": "Two-Year Simultaneous Records Of N2o And No Fluxes From A Farmed Cropland In The Northern China Plain With A Reduced Nitrogen Addition Rate By One-Third", "description": "Abstract   Given the common problem of fertilizer overuse, agronomists are calling for a reduction of the high nitrogen dose by 1/3. We carried out a field experiment over two full winter wheat\u2013summer maize rotations in the North China Plain (NCP) to determine whether this degree of nitrogen reduction will significantly reduce the emissions of nitrous oxide (N2O) and nitric oxide (NO). Three treatments were investigated in the field trial: a control with no nitrogen application, the conventional practice with nitrogen over-application and the optimal practice with a reduced dose of nitrogen by 1/3. Our observations across all treatments over the experimental period reveal significant correlations of the fluxes of either gas with soil temperature and moisture as well as the concentrations of soil ammonium, nitrate and dissolvable organic carbon. There were strong correlations within the functions of the dual Arrhenius and Michaelis\u2013Menten kinetics, giving apparent activation energy values of 40\u201397 and 59\u201392\u00a0kJ\u00a0mol\u22121 for N2O and NO fluxes, respectively. Our results provide annual direct emission factors of 0.48\u20130.96% for N2O and 0.15\u20130.47% for NO and demonstrate a significant correlation between N2O emission induced by fertilization and fertilizer nitrogen use efficiency (NUE). The correlation indicates a significant potential of N2O mitigation via enhancing NUEs. A reduction in the nitrogen dose did not obviously mitigate either the annual NO emission in both rotations or the annual N2O emission in the second one. However, nitrogen reduction significantly decreased the annual total N2O emission by 38% during the first rotation. These inconsistencies in the responses of N2O emission to the reduced nitrogen dose can be attributed to improper fertilization practices, such as broadcasting urea prior to heavy rainfalls or irrigation events during the maize season, which implies a need for further fertilization practice options/techniques in addition to the reduction of nitrogen doses.", "keywords": ["Michaelis\u00e2\u20ac\u201cMenten kinetics", "2. Zero hunger", "Nitrous oxide (N2O)", "Nitric oxide (NO)", "Nitrogen use efficiency", "13. Climate action", "Arrhenius kinetics", "0401 agriculture", " forestry", " and fisheries", "Direct emission factor", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2013.06.016"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2013.06.016", "name": "item", "description": "10.1016/j.agee.2013.06.016", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2013.06.016"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-09-01T00:00:00Z"}}, {"id": "10.1007/s11356-014-3762-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:15:26Z", "type": "Journal Article", "created": "2014-11-04", "title": "Denitrification Kinetics In Biomass- And Biochar-Amended Soils Of Different Landscape Positions", "description": "Knowledge of how biochar impacts soil denitrification kinetics as well as the mechanisms of interactions is essential in order to better predict the nitrous oxide (N2O) mitigation capacity of biochar additions. This study had multiple experiments in which the effect of three biochar materials produced from corn stover (Zea mays L.), ponderosa pine wood residue (Pinus ponderosa Douglas ex Lawson and C. Lawson), switchgrass (Panicum virgatum L.), and their corresponding biomass materials (corn stover, ponderosa pine wood residue, and switchgrass) on cumulative N2O emissions and total denitrification in soils from two different landscape positions (crest and footslope) were studied under varying water-filled pore space (40, 70, and 90% WFPS). Cumulative N2O emissions were reduced by 30 to 70% in both crest and footslope soils. The effect of biochars and biomass treatments on cumulative N2O emissions and total denitrification were only observed at \u226540% WFPS. The denitrification enzyme activity (DEA) kinetic parameters, K s (half-saturation constant), and V max (maximum DEA rate) were both significantly reduced by biochar treatments, with reductions of 70-80% in footslope soil and 80-90 % in the crest soil. The activation energy (E a) and enthalpy of activation of DEA (\u0394H) were both increased with biochar application. The trends in DEA rate constants (K s and V max) were correlated by the trends of thermodynamic parameters (activation energy E a and enthalpy of activation \u0394H) for denitrifying enzyme activity (DEA). The rate constant V max/K s evaluated the capacity of biochars to mitigate the denitrification process. Denitrifying enzyme kinetic parameters can be useful in evaluating the ability of biochars to mitigate N2O gas losses from soil.", "keywords": ["Nitrous Oxide", "Water", "04 agricultural and veterinary sciences", "15. Life on land", "Panicum", "Wood", "Zea mays", "6. Clean water", "Pinus ponderosa", "Kinetics", "Soil", "13. Climate action", "Charcoal", "Denitrification", "0401 agriculture", " forestry", " and fisheries", "Biomass"]}, "links": [{"href": "https://doi.org/10.1007/s11356-014-3762-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20and%20Pollution%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11356-014-3762-2", "name": "item", "description": "10.1007/s11356-014-3762-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11356-014-3762-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-11-05T00:00:00Z"}}, {"id": "10.1016/j.biortech.2018.09.044", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:16:04Z", "type": "Journal Article", "created": "2018-09-10", "title": "Biokinetics of microbial consortia using biogenic sulfur as a novel electron donor for sustainable denitrification", "description": "In this study, the biokinetics of autotrophic denitrification with biogenic S0 (ADBIOS) for the treatment of nitrogen pollution in wastewaters were investigated. The used biogenic S0, a by-product of gas desulfurization, was an elemental microcrystalline orthorhombic sulfur with a median size of 4.69\u202f\u00b5m and a specific surface area of 3.38\u202fm2/g, which made S0 particularly reactive and bioavailable. During denitritation, the biomass enriched on nitrite (NO2-) was capable of degrading up to 240\u202fmg/l NO2--N with a denitritation activity of 339.5\u202fmg NO2--N/g VSS\u00b7d. The use of biogenic S0 induced a low NO2--N accumulation, hindering the NO2--N negative impact on the denitrifying consortia and resulting in a specific denitrification activity of 223.0\u202fmg NO3--N/g VSS\u00b7d. Besides Thiobacillus being the most abundant genus, Moheibacter and Thermomonas were predominantly selected for denitrification and denitritation, respectively.", "keywords": ["Nitrite accumulation", "Nitrogen", "Microbial Consortia", "Biokinetics", "0211 other engineering and technologies", "Electrons", "02 engineering and technology", "Autotrophic denitrification", "Thiobacillus", "01 natural sciences", "6. Clean water", "Community structure", "12. Responsible consumption", "Kinetics", "Bioreactors", "13. Climate action", "Autotrophic denitrification; Biogenic sulfur; Nitrite accumulation; Biokinetics; Community structure", "Biogenic sulfur", "Denitrification", "Biomass", "Sulfur", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://eprints.gla.ac.uk/168662/1/168662.pdf"}, {"href": "https://www.iris.unina.it/bitstream/11588/722336/1/2018%20-%20Kostrytsia%20et%20al.%20-%20Bioresource%20Technology%20-%20Biokinetics%20of%20microbial%20consortia%20using%20biogenic%20S0.pdf"}, {"href": "https://doi.org/10.1016/j.biortech.2018.09.044"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioresource%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biortech.2018.09.044", "name": "item", "description": "10.1016/j.biortech.2018.09.044", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biortech.2018.09.044"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-12-01T00:00:00Z"}}, {"id": "10.1016/j.biortech.2018.12.064", "type": "Feature", "geometry": null, "properties": {"license": "Restricted", "updated": "2026-07-27T16:16:04Z", "type": "Journal Article", "created": "2018-12-22", "title": "ADM1 based mathematical model of trace element complexation in anaerobic digestion processes", "description": "In this study, a new model based on anaerobic digestion model no.1 (ADM1) approach has been proposed to simulate trace elements (TEs) complexation, precipitation and their effect on the anaerobic batch methane production. TEs complexation reactions with VFAs and EDTA have been incorporated in an extended ADM1 model which considers TE precipitation/dissolution reactions as well as biodegradation processes. The kinetic model tracks the dynamics of 90 state variables which constitute the components of the proposed anaerobic digestion (AD) model. The incorporation of the complexation reactions required the definition of new inorganic components (EDTA species) and new complexation process rates in the ADM1 framework. The charge balance was modified accordingly to consider the effects of the additional components. The new model is able to predict: a) the effect of TE-EDTA/VFA complexation on methane production, and b) the effect of the initial calcium and magnesium concentrations on process performance.", "keywords": ["ADM1", "Trace elements", "0211 other engineering and technologies", "02 engineering and technology", "Models", " Theoretical", "Fatty Acids", " Volatile", "01 natural sciences", "7. Clean energy", "Trace Elements", "[SDU] Sciences of the Universe [physics]", "Kinetics", "Biodegradation", " Environmental", "Bioreactors", "13. Climate action", "Anaerobic digestion", "[SDU.STU] Sciences of the Universe [physics]/Earth Sciences", "Complexation", "Mathematical modeling", "Anaerobic digestion; Trace elements; Complexation; Mathematical modeling; ADM1;", "Anaerobiosis", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.biortech.2018.12.064"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioresource%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biortech.2018.12.064", "name": "item", "description": "10.1016/j.biortech.2018.12.064", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biortech.2018.12.064"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-03-01T00:00:00Z"}}, {"id": "10.1016/j.biortech.2019.122619", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:16:05Z", "type": "Journal Article", "created": "2019-12-14", "title": "Reduced chemical kinetics for microscale pyrolysis of softwood and hardwood", "description": "This work studies the chemical kinetics of wood pyrolysis by comparing nine reduced reaction schemes against 22 microscale experiments of softwood and hardwood from the literature. The complexity of reaction schemes ranged from 1 to 12 reactions, with 2 to 7 species. Using multi-objective optimization for isothermal and non-isothermal conditions, the kinetic parameters for each reaction scheme were derived. It was found that the uncertainty of a prediction increases with the number of model parameters, but the accuracy does not always increase with the number of parameters. The appropriate reaction scheme for hardwood is three parallel reactions, as it presents the optimal balance between accuracy and uncertainty. For softwood, a higher complexity could be justified. This work shows the benefits of finding an appropriately complex kinetic scheme by building up complexity from simple schemes.", "keywords": ["570", "Kinetics", "0211 other engineering and technologies", "0202 electrical engineering", " electronic engineering", " information engineering", "02 engineering and technology", "Wood", "Pyrolysis", "Biotechnology"]}, "links": [{"href": "https://doi.org/10.1016/j.biortech.2019.122619"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioresource%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biortech.2019.122619", "name": "item", "description": "10.1016/j.biortech.2019.122619", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biortech.2019.122619"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2019.03.190", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:16:10Z", "type": "Journal Article", "created": "2019-04-01", "title": "Dissolution and aggregation kinetics of zero valent copper nanoparticles in (simulated) natural surface waters: Simultaneous effects of pH, NOM and ionic strength", "description": "The combined effects of pH, dissolved organic carbon (DOC) and Ca2+/Mg2+ on the dissolution and aggregation kinetics of zero valent copper engineered nanoparticles (Cu0 ENPs) were investigated. The dissolution and aggregation of the particles were studied in (a) synthetic aqueous media, similar in chemistry to natural surface waters, and (b) natural surface waters samples, for up to 32 or 24\u202fh. The DOC stabilized the particles and prevented aggregation, and thus increased the available surface area. The higher available surface area in turn accelerated the dissolution of the particles. The presence of Ca2+/Mg2+, however, changed the aggregation and the dissolution of the DOC-stabilized particles. The influence of Ca2+/Mg2+ on DOC-stabilized particles was different at different pH's. In the absence of DOC, 10\u202fmM of Ca2+/Mg2+ induced charge reversal on the particles and caused particle stability against aggregation. This subsequently increased particles dissolution. The results obtained with regard to dissolution and aggregation of the particles in natural surface waters were compared with those determined for the synthetic waters. This comparison showed that the behavior of the particles in the natural surface waters was mostly similar to the behavior determined for media at pH 9. Overall, the current study provides some novel insights into the simultaneous effects of physicochemical parameters of water on particle stability against aggregation and dissolution, and provides data about how the processes of aggregation and dissolution of Cu0 ENPs interact and jointly determine the overall particle fate.", "keywords": ["Cations", " Divalent", "Environmental fate", "Osmolar Concentration", "0211 other engineering and technologies", "Metal Nanoparticles", "Fresh Water", "02 engineering and technology", "Hydrogen-Ion Concentration", "01 natural sciences", "Physico-chemical parameters", "6. Clean water", "Aggregation", "Kinetics", "Solubility", "Aggregation; Complexation; Copper nanoparticles; Dissolution; Environmental fate; Natural water; Physico-chemical parameters", "Complexation", "Natural water", "Calcium", "Magnesium", "Copper nanoparticles", "Organic Chemicals", "Dissolution", "Copper", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2019.03.190"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2019.03.190", "name": "item", "description": "10.1016/j.chemosphere.2019.03.190", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2019.03.190"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-07-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2020.128102", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:16:10Z", "type": "Journal Article", "created": "2020-09-12", "title": "Effect of high hydrostatic pressure-assisted pectinase modification on the Pb2+ adsorption capacity of pectin isolated from sweet potato residue", "description": "Novel pectin derived from sweet potato residue was modified by high hydrostatic pressure (HHP)-assisted pectinase and then used for Pb2+ removal from aqueous solutions. The removal characteristics and mechanisms were also investigated. Results showed that modified sweet potato pectin exhibited greater adsorption performances for Pb2+ than that of natural ones, and showed excellent eco-friendly properties and good potential for adsorption of some other heavy metals (such as Cu2+). The adsorption curves were much more conformed to Langmuir model, and the highest capacity for Pb2+ adsorption was 263.15\u00a0mg/g with 1.00% pectin at pH 7. Chemical adsorption process of pectin for Pb2+ absorption involved O-containing functional groups (O-H, COO-), cation exchange, and along with electrostatic interactions. Overall, the results in this study indicated that sweet potato pectin modified with HHP-assisted pectinase had the potential to become an environmentally friendly coagulant-flocculant agent for the heavy metal adsorption, especially for Pb2+.", "keywords": ["02 engineering and technology", "Hydrogen-Ion Concentration", "Wastewater", "01 natural sciences", "Water Purification", "Kinetics", "Polygalacturonase", "Lead", "Hydrostatic Pressure", "Pectins", "Adsorption", "Ipomoea batatas", "0210 nano-technology", "Water Pollutants", " Chemical", "0105 earth and related environmental sciences"], "contacts": [{"organization": "Mudugamuwa Arachchige, Melani Purnika, Mu, Taihua, Ma, Mengmei,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2020.128102"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2020.128102", "name": "item", "description": "10.1016/j.chemosphere.2020.128102", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2020.128102"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-01-01T00:00:00Z"}}, {"id": "10.1016/j.ecolmodel.2023.110507", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:16:16Z", "type": "Journal Article", "created": "2023-10-10", "title": "Interactive effects of microbial functional diversity and carbon availability on decomposition \u2013 A theoretical exploration", "description": "<div><p>Microbial functional diversity in litter and soil has been hypothesized to affect the rate of decomposition of organic matter and other soil ecosystem functions. However, there are no clear theoretical expectations on how these effects might change with substrate availability, heterogeneity in the substrate chemistry, and different aspects of functional diversity itself (number of microbial groups vs. distribution of functional traits). To explore how these factors shape the decomposition-diversity relation, we carry out numerical experiments using a flexible reaction network comprising microbial processes and interactions with bioavailable carbon (extracellular degradation, uptake, respiration, growth, and mortality), and ecological processes (competition among the different groups). We also considered diverse carbon substrates, in terms of varying nominal oxidation state of carbon (NOSC). The reaction network was used to test the effects of (i) number of microbial groups, (ii) number of carbon pools, (iii) microbial functional diversity, and (iv) amount of bioavailable carbon. We found that the decomposition rate constant increases with increasing substrate concentration and heterogeneity, as well as with increasing microbial functional diversity or variance of microbial traits, albeit these biological factors are less important. The multivariate dependence of the decomposition rate constant (and other decomposition and microbial growth metrics) on substrate and microbial factors can be described using power laws with exponents lower than one, indicating that diversity effects on decomposition and microbial growth are reduced at high substrate concentration and heterogeneity, or at high microbial diversity.</p></div>", "keywords": ["Microbial model Organic matter decomposition Organic carbon oxidation state Decomposition kinetics Microbial diversity", "[SDE] Environmental Sciences", "2. Zero hunger", "Organic matter decomposition", "Supplementary Information", "GE", "Ecology", "330", "GF Human ecology. Anthropogeography", "15. Life on land", "ta4112", "GF", "6. Clean water", "12. Responsible consumption", "Ecological Modelling", "Decomposition kinetics", "13. Climate action", "Microbial functional trait", "Microbial diversity-function relation", "Microbial model", "GE Environmental Sciences", "Organic carbon oxidation state"]}, "links": [{"href": "https://doi.org/10.1016/j.ecolmodel.2023.110507"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecological%20Modelling", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.ecolmodel.2023.110507", "name": "item", "description": "10.1016/j.ecolmodel.2023.110507", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.ecolmodel.2023.110507"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-01T00:00:00Z"}}, {"id": "10.1016/j.ijbiomac.2018.12.270", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:16:50Z", "type": "Journal Article", "created": "2019-01-03", "title": "Improving polyhydroxyalkanoates production in phototrophic mixed cultures by optimizing accumulator reactor operating conditions", "description": "Open AccessPolyhydroxyalkanoates (PHAs) production with phototrophic mixed cultures (PMCs) has been recently proposed. These cultures can be selected under the permanent presence of carbon and the PHA production can be enhanced in subsequent accumulation steps. To optimize the PHA production in accumulator reactors, this work evaluated the impact of 1) initial acetate concentration, 2) light intensity, 3) removal of residual nitrogen on the culture performance. Results indicate that low acetate concentration (&lt;30CmM) and specific light intensities around 20W/gX are optimal operating conditions that lead to high polyhydroxybutyrate (PHB) storage yields (0.83+-0.07 Cmol-PHB/Cmol-Acet) and specific PHB production rates of 2.21+-0.07 Cmol-PHB/Cmol X d. This rate is three times higher than previously registered in non-optimized accumulation tests and enabled a PHA content increase from 15 to 30% in less than 4h. Also, it was shown for the first time, the capability of a PMC to use a real waste, fermented cheese whey, to produce PHA with a hydroxyvalerate (HV) content of 12%. These results confirm that fermented wastes can be used as substrates for PHA production with PMCs and that the energy levels in sunlight that lead to specific light intensities from 10 to 20W/gX are sufficient to drive phototrophic PHA production processes.", "keywords": ["0106 biological sciences", "1303 Biochemistry", "Light", "Nitrogen", "Polyhydroxyalkanoates (PHA)", "Fermented cheese whey (FCW)", "Phototrophic mixed cultures (PMCs)", "Acetates", "7. Clean energy", "01 natural sciences", "1315 Structural Biology", "Bioreactors", "Cheese", "Whey", "1312 Molecular Biology", "0105 earth and related environmental sciences", "Polyhydroxyalkanoates", "Volatile fatty acids (VFAs)", "Other Quantitative Biology (q-bio.OT)", "Quantitative Biology - Other Quantitative Biology", "Purple phototrophic bacteria (PPB)", "Kinetics", "Phototrophic Processes", "13. Climate action", "FOS: Biological sciences", "Fermentation"]}, "links": [{"href": "https://doi.org/10.1016/j.ijbiomac.2018.12.270"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/International%20Journal%20of%20Biological%20Macromolecules", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.ijbiomac.2018.12.270", "name": "item", "description": "10.1016/j.ijbiomac.2018.12.270", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.ijbiomac.2018.12.270"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-04-01T00:00:00Z"}}, {"id": "10.1016/j.jhazmat.2020.122027", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:16:59Z", "type": "Journal Article", "created": "2020-01-07", "title": "Bioaccumulation, physiological distribution, and biotransformation of tetrabromobisphenol A (TBBPA) in the geophagous earthworm Metaphire guillelmi \u2013 Hint for detoxification strategy", "description": "The mechanisms underlying the bioaccumulation and detoxification of tetrabromobisphenol A (TBBPA) by terrestrial invertebrates are poorly understood. We used uniformly ring-14C-labelled TBBPA to investigate the bioaccumulation kinetics, metabolites distribution, and subsequent detoxification strategy of TBBPA in the geophagous earthworm Metaphire guillelmi in soil. The modeling of bioaccumulation kinetics showed a higher biota-soil-accumulation-factor of total 14C than that of the parent compound TBBPA, indicating that most of the ingested TBBPA was transformed into metabolites or sequestered as bound residues in the earthworms. Bound-residue formation in the digestive tract may hinder the accumulation of TBBPA in other parts of the body. Nonetheless, via the circulatory system, TBBPA was transferred to other tissues, especially the clitellum region, where sensitive organs are located. In the clitellum region, TBBPA was quickly transformed to less toxic dimethyl TBBPA ether and rapidly depurated through feces. We conclude that the detoxification of TBBPA in M. guillelmi occurred via bound-residue formation in the digestive tract as well as the generation and depuration of O-methylation metabolites. Our results provided direct evidence of TBBPA detoxification in earthworms. Further researches are needed to confirm whether O-methylation coupled with depuration is a common detoxification strategy for phenolic xenobiotics in other soil organisms needs to be determined.", "keywords": ["Gastrointestinal Tract", "Kinetics", "Inactivation", " Metabolic", "Polybrominated Biphenyls", "0211 other engineering and technologies", "Animals", "Soil Pollutants", "02 engineering and technology", "Oligochaeta", "Bioaccumulation", "01 natural sciences", "Biotransformation", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.jhazmat.2020.122027"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Hazardous%20Materials", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jhazmat.2020.122027", "name": "item", "description": "10.1016/j.jhazmat.2020.122027", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jhazmat.2020.122027"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-01T00:00:00Z"}}, {"id": "10.1016/j.jhazmat.2021.126527", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:16:59Z", "type": "Journal Article", "created": "2021-06-29", "title": "Reduction of antibiotic resistance determinants in urban wastewater by ozone: Emphasis on the impact of wastewater matrix towards the inactivation kinetics, toxicity and bacterial regrowth", "description": "This study investigated the impact of bench-scale ozonation on the inactivation of total cultivable and antibiotic-resistant bacteria (faecal coliforms, Escherichia coli, Pseudomonas aeruginosa, Enterococcus spp., and total heterotrophs), and the reduction of gene markers (16S rRNA and intl1) and antibiotic resistance genes (qacE\u03941, sul1, aadA1 and dfrA1) indigenously present in wastewater effluents treated by membrane bioreactor (MBR) or conventional activated sludge (CAS). The Chick-Watson model-predicted ozone exposure (CT) requirements, showed that higher CT values were needed for CAS- than MBR-treated effluents to achieve a 3-log reduction of each microbial group, i.e., ~30 and 10 gO3 min gDOC-1 respectively. Ozonation was efficient in inactivating the examined antibiotic-resistant bacteria, and no bacterial regrowth was observed after 72\u00a0h. The genes abundance decreased significantly by ozone, but an increase in their abundance was detected 72\u00a0h after storage of the treated samples. A very low removal of DOC was achieved and at the same time phyto- and eco-toxicity increased after the ozonation treatment in both wastewater matrices. The gene abundance, regrowth and toxicity results of this study may be of high environmental significance for comprehensive evaluation of ozone and may guide future studies in assessing these parameters for other oxidants/disinfectants.", "keywords": ["Bacteria", "0211 other engineering and technologies", "Drug Resistance", " Microbial", "02 engineering and technology", "Wastewater", "Waste Disposal", " Fluid", "01 natural sciences", "6. Clean water", "Anti-Bacterial Agents", "Disinfection", "Kinetics", "Ozone", "Genes", "13. Climate action", "Ozonation", "Phytotoxicity", "RNA", " Ribosomal", " 16S", "11. Sustainability", "Ecotoxicity", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.jhazmat.2021.126527"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Hazardous%20Materials", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jhazmat.2021.126527", "name": "item", "description": "10.1016/j.jhazmat.2021.126527", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jhazmat.2021.126527"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-01T00:00:00Z"}}, {"id": "10.1016/j.jtice.2020.11.031", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:17:01Z", "type": "Journal Article", "created": "2020-12-03", "title": "Struvite production from dairy processing wastewater: Optimizing reaction conditions and effects of foreign ions through multi-response experimental models", "description": "Abstract   Struvite is the preferred form of phosphorus recovery for fertilizer by chemical precipitation. The concentration of phosphorus in raw wastewater from dairy processing is higher than acceptable values for prevention of water pollution. Along with phosphorus, potassium and calcium are its main counterions with high concentration. Thus, calcium phosphate salts are prompt to precipitate and decrease struvite production. The effect of such phosphate counter-ions were optimized using design of experiments and desirability function to maximize both phosphorus recovery and struvite production. Under optimum conditions, the yields were 98.6\u00a0\u00b1\u00a01.1 and 85.7\u00a0\u00b1\u00a02.5 percent for phosphorus recovery and struvite precipitation, respectively. Factors optimization was achieved with desirability D\u00a0=\u00a00.995. By in-vitro assay of nutrients release, the product demonstrated better phosphorus availability than the one obtained with high calcium dose in reactor. The obtained molar ratios of dose can serve in wastewater treatment coupled to phosphorus precipitation with a fertilizer value product.", "keywords": ["Nutrients release kinetics", "Counterions effect", "Phosphorus recovery", "Struvite precipitation", "Multi-response", "Desirability", "01 natural sciences", "6. Clean water", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.jtice.2020.11.031"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20the%20Taiwan%20Institute%20of%20Chemical%20Engineers", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jtice.2020.11.031", "name": "item", "description": "10.1016/j.jtice.2020.11.031", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jtice.2020.11.031"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-12-01T00:00:00Z"}}, {"id": "10.1016/j.vaccine.2004.03.053", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:17:49Z", "type": "Journal Article", "created": "2004-04-28", "title": "Reducing Methane Emissions In Sheep By Immunization Against Rumen Methanogens", "description": "This work was conducted to determine if methane emissions from sheep immunized with an anti-methanogen vaccine were significantly lower than methane emissions from non-immunized sheep, to test the effectiveness of two different vaccine formulations (VF) on methane abatement, and to compare methane emissions measured using a closed-circuit respiration chamber and the sulphur-hexafluoride (SF6) tracer technique. Thirty mature wether sheep were randomly allocated to three treatment groups (n = 10). One group received an immunization of adjuvant only on days 0 and 153 (control), a second group received an immunization with a 3-methanogen mix on days 0 and 153 (VF3 + 3), and a third group received an immunization of a 7-methanogen mix on day 0 followed by a 3-methanogen mix on day 153 (VF7 + 3). Four weeks post-secondary immunization, there was a significant 7.7% reduction in methane production per kg dry matter intake in the VF7 + 3 group compared to the controls (P = 0.051). However, methane emissions from sheep immunized with VF7 + 3 were not significantly different when compared to the sheep in the control group (P = 0.883). The average IgG and IgA antibody titres in both plasma and saliva of the VF3 + 3 immunized sheep were four to nine times higher than those immunized with VF7 + 3 (P< 0.001) at both 3 and 6 weeks post-secondary immunization. Data also revealed that SF6 methane estimates were consistently higher than the respiration chamber estimates and that there was no significant correlation between the SF6 methane estimates and the respiration chamber methane estimates (R2 = 0.11).", "keywords": ["2. Zero hunger", "Vaccines", "Rumen", "Sheep", "Time Factors", "Methanobacterium", "Immunization", " Secondary", "0402 animal and dairy science", "04 agricultural and veterinary sciences", "Methanobrevibacter", "Archaea", "Immunoglobulin A", "3. Good health", "Antibodies", " Archaeal", "Kinetics", "Adjuvants", " Immunologic", "13. Climate action", "Immunoglobulin G", "Methanosarcina", "Animals", "Methanomicrobiaceae", "Saliva", "Methane"]}, "links": [{"href": "https://doi.org/10.1016/j.vaccine.2004.03.053"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Vaccine", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.vaccine.2004.03.053", "name": "item", "description": "10.1016/j.vaccine.2004.03.053", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.vaccine.2004.03.053"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-09-01T00:00:00Z"}}, {"id": "10.1016/j.watres.2017.10.006", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:17:50Z", "type": "Journal Article", "created": "2017-10-10", "title": "Tannic acid promotes ion release of copper oxide nanoparticles: Impacts from solution pH change and complexation reactions", "description": "The increasing number of applications in which copper oxide nanoparticles (CuO NPs) are used, may lead to potential release of CuO NPs into the environment. However, the impact of natural organic matters on the behavior and fate of CuO NPs in aquatic media is still largely unknown. In this study, the dissolution and aggregation of CuO NPs under the exposure of tannic acid (TA) were monitored over a period of 72\u00a0h, with a focus on assessing the contributions of solution pH changes and complexation reactions. Results showed that the total amount of Cu2+ released from CuO NPs increased in the presence of TA especially at the highest TA concentration of 73.5\u00a0\u03bcmol/L. Although TA was observed to wrap around the CuO NPs, the aggregation of CuO NPs was not strongly influenced by TA and by the solution pH as investigated in this study. The kinetics of Cu2+ release were fitted using the modified pseudo second-order model and the rate of dissolution was assessed to be highest at TA\u00a0=\u00a014.7\u00a0\u03bcmol/L. At pH\u00a0=\u00a04, the increased H+ concentration was responsible for increased Cu2+ release, whereas the complexation reaction between Cu2+ and TA dominated at pH\u00a0=\u00a07. These findings suggested that the effects of TA on the dissolution of CuO NPs were a combination of solution pH change and complexation reaction, the relative fractions of which also depended on the solution pH. Additionally, the percentage of Cu2+ released from the CuO NPs was found to increase upon decreasing concentrations of CuO NPs. Our work helps to further understand how and to which extent natural organic matters affect the behavior and fate of CuO NPs.", "keywords": ["0211 other engineering and technologies", "Metal Nanoparticles", "Oxides", "02 engineering and technology", "Hydrogen-Ion Concentration", "01 natural sciences", "7. Clean energy", "6. Clean water", "Kinetics", "13. Climate action", "Tannins", "Copper", "Water Pollutants", " Chemical", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.watres.2017.10.006"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Water%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.watres.2017.10.006", "name": "item", "description": "10.1016/j.watres.2017.10.006", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.watres.2017.10.006"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-12-01T00:00:00Z"}}, {"id": "10.1038/nature01051", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:18:18Z", "type": "Journal Article", "created": "2002-10-30", "title": "Quantifying Nitrogen-Fixation In Feather Moss Carpets Of Boreal Forests", "description": "Biological nitrogen (N) fixation is the primary source of N within natural ecosystems, yet the origin of boreal forest N has remained elusive. The boreal forests of Eurasia and North America lack any significant, widespread symbiotic N-fixing plants. With the exception of scattered stands of alder in early primary successional forests, N-fixation in boreal forests is considered to be extremely limited. Nitrogen-fixation in northern European boreal forests has been estimated at only 0.5 kg N ha(-1) yr(-1); however, organic N is accumulated in these ecosystems at a rate of 3 kg N ha(-1) yr(-1) (ref. 8). Our limited understanding of the origin of boreal N is unacceptable given the extent of the boreal forest region, but predictable given our imperfect knowledge of N-fixation. Herein we report on a N-fixing symbiosis between a cyanobacterium (Nostoc sp.) and the ubiquitous feather moss, Pleurozium schreberi (Bird) Mitt. that alone fixes between 1.5 and 2.0 kg N ha(-1) yr(-1) in mid- to late-successional forests of northern Scandinavia and Finland. Previous efforts have probably underestimated N-fixation potential in boreal forests.", "keywords": ["Sweden", "0106 biological sciences", "Acetylene", "Norway", "04 agricultural and veterinary sciences", "15. Life on land", "Cyanobacteria", "01 natural sciences", "Bryopsida", "Trees", "Plant Leaves", "Kinetics", "Nitrogen Fixation", "0401 agriculture", " forestry", " and fisheries", "Symbiosis", "Finland"]}, "links": [{"href": "https://doi.org/10.1038/nature01051"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/nature01051", "name": "item", "description": "10.1038/nature01051", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/nature01051"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2002-10-31T00:00:00Z"}}, {"id": "10.1071/WF16198", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:18:40Z", "type": "Journal Article", "created": "2017-10-31", "title": "Downward spread of smouldering peat fire: the role of moisture, density and oxygen supply", "description": "<p>Smouldering fires in peatland are different from the flames in wildland fires. Smouldering peat fire is slow, low-temperature and more persistent, releasing large amounts of smoke into the atmosphere. In this work, we experimentally and computationally investigate the vertical downward spread of smouldering fire in a column of 30cm-tall moss peat under variable moisture content (MC) and bulk density. The measured downward spread rate decreases with depth and wet bulk density, and is ~1cmh\uffe2\uff88\uff921 equivalent to a carbon emission flux of 200 tonnesday\uffe2\uff88\uff921ha\uffe2\uff88\uff921. We observe that downward spread increases as MC increases substantially at least inside the range from 10 to 70%, which is not intuitive and goes against the trend observed for the horizontal spread in the same peat. We also conduct one-dimensional computational simulations to successfully reproduce the experimental observations. The analysis shows that the spread rate increases with MC and decreases with density because smouldering spread is controlled by the oxygen supply. The volume of the porous peat expands when absorbing water, which reduces the density of organic matter and decreases the heat release rate. This shows that the widely assumed conclusion that the spread rate of wildfire decreases with MC is not universal when applied to smouldering fires.</p>", "keywords": ["WILDFIRES", "Science & Technology", "0602 Ecology", "fire spread rate", "Forestry", "BURN", "in-depth spread", "624", "15. Life on land", "01 natural sciences", "7. Clean energy", "BIOMASS", "modelling", "COMBUSTION", "IGNITION", "13. Climate action", "DEPTH", "carbon emission", "0705 Forestry Sciences", "peatland", "ORGANIC SOILS", "0502 Environmental Science And Management", "Life Sciences & Biomedicine", "KINETICS", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.publish.csiro.au/WF/pdf/WF16198"}, {"href": "https://doi.org/10.1071/WF16198"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/International%20Journal%20of%20Wildland%20Fire", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1071/WF16198", "name": "item", "description": "10.1071/WF16198", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1071/WF16198"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-01-01T00:00:00Z"}}, {"id": "10.1073/pnas.0706518104", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:18:46Z", "type": "Journal Article", "created": "2007-08-21", "title": "Increases In Nitrogen Uptake Rather Than Nitrogen-Use Efficiency Support Higher Rates Of Temperate Forest Productivity Under Elevated Co2", "description": "<p>             Forest ecosystems are important sinks for rising concentrations of atmospheric CO             2             . In previous research, we showed that net primary production (NPP) increased by 23 \uffc2\uffb1 2% when four experimental forests were grown under atmospheric concentrations of CO             2             predicted for the latter half of this century. Because nitrogen (N) availability commonly limits forest productivity, some combination of increased N uptake from the soil and more efficient use of the N already assimilated by trees is necessary to sustain the high rates of forest NPP under free-air CO             2             enrichment (FACE). In this study, experimental evidence demonstrates that the uptake of N increased under elevated CO             2             at the Rhinelander, Duke, and Oak Ridge National Laboratory FACE sites, yet fertilization studies at the Duke and Oak Ridge National Laboratory FACE sites showed that tree growth and forest NPP were strongly limited by N availability. By contrast, nitrogen-use efficiency increased under elevated CO             2             at the POP-EUROFACE site, where fertilization studies showed that N was not limiting to tree growth. Some combination of increasing fine root production, increased rates of soil organic matter decomposition, and increased allocation of carbon (C) to mycorrhizal fungi is likely to account for greater N uptake under elevated CO             2             . Regardless of the specific mechanism, this analysis shows that the larger quantities of C entering the below-ground system under elevated CO             2             result in greater N uptake, even in N-limited ecosystems. Biogeochemical models must be reformulated to allow C transfers below ground that result in additional N uptake under elevated CO             2             .           </p>", "keywords": ["rotation poplar plantation", "0106 biological sciences", "Nitrogen", "Climate", "atmospheric carbon-dioxide", "enrichment face", "organic nitrogen", "Biological Transport", "deciduous forest", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "01 natural sciences", "Trees", "Kinetics", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "populus-tremuloides", "community composition", "soil-n availability", "fine-root production", "Ecosystem", "ecosystem responses"]}, "links": [{"href": "https://doi.org/10.1073/pnas.0706518104"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20National%20Academy%20of%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1073/pnas.0706518104", "name": "item", "description": "10.1073/pnas.0706518104", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1073/pnas.0706518104"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-08-28T00:00:00Z"}}, {"id": "10.1093/nar/gkz378", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:19:06Z", "type": "Journal Article", "created": "2019-05-06", "title": "Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport", "description": "Abstract<p>Caver Web 1.0 is a web server for comprehensive analysis of protein tunnels and channels, and study of the ligands\uffe2\uff80\uff99 transport through these transport pathways. Caver Web is the first interactive tool allowing both the analyses within a single graphical user interface. The server is built on top of the abundantly used tunnel detection tool Caver 3.02 and CaverDock 1.0 enabling the study of the ligand transport. The program is easy-to-use as the only required inputs are a protein structure for a tunnel identification and a list of ligands for the transport analysis. The automated guidance procedures assist the users to set up the calculation in a way to obtain biologically relevant results. The identified tunnels, their properties, energy profiles and trajectories for ligands\uffe2\uff80\uff99 passages can be calculated and visualized. The tool is very fast (2\uffe2\uff80\uff9320 min per job) and is applicable even for virtual screening purposes. Its simple setup and comprehensive graphical user interface make the tool accessible for a broad scientific community. The server is freely available at https://loschmidt.chemi.muni.cz/caverweb.</p>", "keywords": ["0301 basic medicine", "Internet", "0303 health sciences", "Binding Sites", "BINDING; STABILITY; MECHANISM; MYOGLOBIN; MIGRATION; DYNAMICS; KINETICS; PATHWAY; ENZYMES; SERVER", "Computational Biology", "Ligands", "Protein Structure", " Tertiary", "3. Good health", "Molecular Docking Simulation", "Benchmarking", "User-Computer Interface", "03 medical and health sciences", "Web Server Issue", "Animals", "Humans", "Protein Interaction Domains and Motifs", "Amino Acid Sequence", "Carrier Proteins", "Protein Structure", " Quaternary", "Algorithms", "Protein Binding"]}, "links": [{"href": "http://academic.oup.com/nar/article-pdf/47/W1/W414/28880050/gkz378.pdf"}, {"href": "https://doi.org/10.1093/nar/gkz378"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nucleic%20Acids%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/nar/gkz378", "name": "item", "description": "10.1093/nar/gkz378", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/nar/gkz378"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-05-22T00:00:00Z"}}, {"id": "10.1093/toxsci/kfae051", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:19:06Z", "type": "Journal Article", "created": "2024-04-18", "title": "Parameter grouping and co-estimation in physiologically based kinetic models using genetic algorithms", "description": "Abstract                <p>Physiologically based kinetic (PBK) models are widely used in pharmacology and toxicology for predicting the internal disposition of substances upon exposure, voluntarily or not. Due to their complexity, a large number of model parameters need to be estimated, either through in silico tools, in vitro experiments, or by fitting the model to in vivo data. In the latter case, fitting complex structural models on in vivo data can result in overparameterization and produce unrealistic parameter estimates. To address these issues, we propose a novel parameter grouping approach, which reduces the parametric space by co-estimating groups of parameters across compartments. Grouping of parameters is performed using genetic algorithms and is fully automated, based on a novel goodness-of-fit metric. To illustrate the practical application of the proposed methodology, two case studies were conducted. The first case study demonstrates the development of a new PBK model, while the second focuses on model refinement. In the first case study, a PBK model was developed to elucidate the biodistribution of titanium dioxide (TiO2) nanoparticles in rats following intravenous injection. A variety of parameter estimation schemes were employed. Comparative analysis based on goodness-of-fit metrics demonstrated that the proposed methodology yields models that outperform standard estimation approaches, while utilizing a reduced number of parameters. In the second case study, an existing PBK model for perfluorooctanoic acid (PFOA) in rats was extended to incorporate additional tissues, providing a more comprehensive portrayal of PFOA biodistribution. Both models were validated through independent in vivo studies to ensure their reliability.</p", "keywords": ["Titanium", "Male", "0301 basic medicine", "Fluorocarbons", "Models", " Biological", "Biotransformation", " Toxicokinetics", " and Pharmacokinetics", "Rats", "Kinetics", "03 medical and health sciences", "0302 clinical medicine", "Animals", "Nanoparticles", "Tissue Distribution", "Computer Simulation", "Caprylates", "Algorithms"]}, "links": [{"href": "https://academic.oup.com/toxsci/article-pdf/200/1/31/58318724/kfae051.pdf"}, {"href": "https://doi.org/10.1093/toxsci/kfae051"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Toxicological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/toxsci/kfae051", "name": "item", "description": "10.1093/toxsci/kfae051", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/toxsci/kfae051"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-04-19T00:00:00Z"}}, {"id": "10.1111/j.1469-8137.2007.02054.x", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:19:41Z", "type": "Journal Article", "created": "2007-03-26", "title": "Irrigation And Enhanced Soil Carbon Input Effects On Below-Ground Carbon Cycling In Semiarid Temperate Grasslands", "description": "Global climate change is generally expected to increase net primary production, resulting in increased soil carbon (C) inputs. To gain an understanding of how such increased soil C inputs would affect C cycling in the vast grasslands of northern China, we conducted a field experiment in which the responses of plant and microbial biomass and respiration were studied. Our experiment included the below-ground addition of particulate organic matter (POM) at rates equivalent to 0, 60, 120 and 240 g C m(-2), under either natural precipitation or under enhanced precipitation during the summer period (as predicted for that region in recent simulations using general circulation models). We observed that addition of POM had a large effect on soil microbial biomass and activity and that a major part of the added C was rapidly lost from the system. This suggests that microbial activity in the vast temperate grassland ecosystems of northern China is energy-limited. Moreover, POM addition (and the associated nutrient release) affected plant growth much more than the additional water input. Although we performed no direct fertilization experiments, the response of plant productivity to POM addition (and associated release of nutrients) leads us to believe that plant productivity in the semiarid grassland ecosystems of northern China is primarily limited by nutrients and not by water.", "keywords": ["2. Zero hunger", "China", "Altitude", "Climate", "Temperature", "Water", "04 agricultural and veterinary sciences", "15. Life on land", "Poaceae", "Carbon", "Kinetics", "Soil", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Desert Climate", "Ecosystem"]}, "links": [{"href": "https://doi.org/10.1111/j.1469-8137.2007.02054.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1469-8137.2007.02054.x", "name": "item", "description": "10.1111/j.1469-8137.2007.02054.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1469-8137.2007.02054.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-03-26T00:00:00Z"}}, {"id": "10.2134/jeq2005.0476", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:20:57Z", "type": "Journal Article", "created": "2006-10-28", "title": "Tillage System, Application Rate, And Extreme Event Effects On Herbicide Losses In Surface Runoff", "description": "ABSTRACT<p>Conservation tillage can reduce soil loss; however, the residual herbicides normally used to control weeds are often detected in surface runoff at high levels, particularly if runoff\uffe2\uff80\uff90producing storms occur shortly after application. Therefore, we measured losses of alachlor, atrazine, linuron, and metribuzin from seven small (0.45\uffe2\uff80\uff930.79\uffe2\uff80\uff90ha) watersheds for 9 yr (1993\uffe2\uff80\uff932001) to investigate whether a reduced\uffe2\uff80\uff90input system for corn (Zea mays L.) and soybean [Glycine max (L.) Merr.] production with light disking, cultivation, and half\uffe2\uff80\uff90rate herbicide applications could reduce losses compared with chisel and no\uffe2\uff80\uff90till. As a percentage of application, annual losses were highest for all herbicides for no\uffe2\uff80\uff90till and similar for chisel and reduced\uffe2\uff80\uff90input. Atrazine was the most frequently detected herbicide and yearly flow\uffe2\uff80\uff90weighted concentrations exceeded the drinking water standard of 3 \uffce\uffbcg L\uffe2\uff88\uff921 in 20 out of 27 watershed years that it was applied. Averaged for 9 corn yr, yearly flow\uffe2\uff80\uff90weighted atrazine concentrations were 26.3, 9.6, and 8.3 \uffce\uffbcg L\uffe2\uff88\uff921 for no\uffe2\uff80\uff90till, chisel, and reduced\uffe2\uff80\uff90input, respectively. Similarly, flow\uffe2\uff80\uff90weighted concentrations of alachlor exceeded the drinking water standard of 2 \uffce\uffbcg L\uffe2\uff88\uff921 in 23 out of 54 application years and in all treatments. Thus, while banding and half\uffe2\uff80\uff90rate applications as part of a reduced\uffe2\uff80\uff90input management practice reduced herbicide loss, concentrations of some herbicides may still be a concern. For all watersheds, 60 to 99% of herbicide loss was due to the five largest transport events during the 9\uffe2\uff80\uff90yr period. Thus, regardless of tillage practice, a small number of runoff events, usually shortly after herbicide application, dominated herbicide transport.</p>", "keywords": ["2. Zero hunger", "Glycine max", "Herbicides", "Triazines", "Rain", "Agriculture", "04 agricultural and veterinary sciences", "15. Life on land", "Zea mays", "6. Clean water", "Kinetics", "Water Supply", "13. Climate action", "Acetamides", "Water Movements", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Atrazine", "Linuron", "Water Pollutants", " Chemical", "Environmental Monitoring"]}, "links": [{"href": "https://doi.org/10.2134/jeq2005.0476"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environmental%20Quality", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2134/jeq2005.0476", "name": "item", "description": "10.2134/jeq2005.0476", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2134/jeq2005.0476"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-11-01T00:00:00Z"}}, {"id": "10.2134/jeq2011.0058", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:20:58Z", "type": "Journal Article", "created": "2012-06-29", "title": "Kinetics Of Carbon Mineralization Of Biochars Compared With Wheat Straw In Three Soils", "description": "Application of biochars to soils may stabilize soil organic matter and sequester carbon (C). The objectives of our research were to study in vitro C mineralization kinetics of various biochars in comparison with wheat straw in three soils and to study their contribution to C stabilization. Three soils (Oxisol, Alfisol topsoil, and Alfisol subsoil) were incubated at 25\u00b0C with wheat straw, charcoal, hydrothermal carbonization coal (HTC), low-temperature conversion coal (LTC), and a control (natural organic matter). Carbon mineralization was analyzed by alkali absorption of CO released at regular intervals over 365 d. Soil samples taken after 5 and 365 d of incubation were analyzed for soluble organic C and inorganic N. Chemical characterization of biochars and straw for C and N bonds was performed with Fourier transformation spectroscopy and with the N fractionation method, respectively. The LTC treatment contained more N in the heterocyclic-bound N fraction as compared with the biochars and straw. Charcoal was highly carbonized when compared with the HTC and LTC. The results show higher C mineralization and a lower half-life of straw-C compared with biochars. Among biochars, HTC showed some C mineralization when compared with charcoal and LTC over 365 d. Carbon mineralization rates were different in the three soils. The half-life of charcoal-C was higher in the Oxisol than in the Alfisol topsoil and subsoil, possibly due to high Fe-oxides in the Oxisol. The LTC-C had a higher half-life, possibly due to N unavailability. We conclude that biochar stabilization can be influenced by soil type.", "keywords": ["2. Zero hunger", "Kinetics", "Soil", "Plant Stems", "Nitrogen", "Charcoal", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "Carbon", "Triticum"]}, "links": [{"href": "https://doi.org/10.2134/jeq2011.0058"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environmental%20Quality", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2134/jeq2011.0058", "name": "item", "description": "10.2134/jeq2011.0058", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2134/jeq2011.0058"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-07-01T00:00:00Z"}}, {"id": "10.3389/fevo.2023.1094269", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:21:35Z", "type": "Journal Article", "created": "2023-02-03", "title": "Decomposition rate as an emergent property of optimal microbial foraging", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Decomposition kinetics are fundamental for quantifying carbon and nutrient cycling in terrestrial and aquatic ecosystems. Several theories have been proposed to construct process-based kinetics laws, but most of these theories do not consider that microbial decomposers can adapt to environmental conditions, thereby modulating decomposition. Starting from the assumption that a homogeneous microbial community maximizes its growth rate over the period of decomposition, we formalize decomposition as an optimal control problem where the decomposition rate is a control variable. When maintenance respiration is negligible, we find that the optimal decomposition kinetics scale as the square root of the substrate concentration, resulting in growth kinetics following a Hill function with exponent 1/2 (rather than the Monod growth function). When maintenance respiration is important, optimal decomposition is a more complex function of substrate concentration, which does not decrease to zero as the substrate is depleted. With this optimality-based formulation, a trade-off emerges between microbial carbon-use efficiency (ratio of growth rate over substrate uptake rate) and decomposition rate at the beginning of decomposition. In environments where carbon substrates are easily lost due to abiotic or biotic factors, microbes with higher uptake capacity and lower efficiency are selected, compared to environments where substrates remain available. The proposed optimization framework provides an alternative to purely empirical or process-based formulations for decomposition, allowing exploration of the effects of microbial adaptation on element cycling.</p></article>", "keywords": ["Ekologi", "0301 basic medicine", "0303 health sciences", "microbial model", "Ecology", "Evolution", "Applied Mathematics", "500", "growth-efficiency trade-off", "6. Clean water", "510", "03 medical and health sciences", "13. Climate action", "microbial adaptation", "QH359-425", "decomposition kinetics", "optimization", "Mathematics", "Ecology", " Evolution", " Behavior and Systematics", "QH540-549.5"]}, "links": [{"href": "https://doi.org/10.3389/fevo.2023.1094269"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fevo.2023.1094269", "name": "item", "description": "10.3389/fevo.2023.1094269", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fevo.2023.1094269"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-02-03T00:00:00Z"}}, {"id": "10.3389/fmech.2018.00018", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:21:35Z", "type": "Journal Article", "created": "2018-11-20", "title": "The Role of Heat Transfer Limitations in Polymer Pyrolysis at the Microscale", "description": "Pyrolysis of synthetic or natural polymers is an important process in many industries such as fire safety, thermal recycling, and biomass power generation. The kinetics of pyrolysis is usually studied by thermogravimetric analysis (TGA), which is based on measuring the mass loss of a microscale sample and measuring the temperature of the surrounding fluid during controlled heating. The literature is rich in TGA measurements, which are often assumed to be governed solely by chemical kinetics. Heat and mass transfer effects, however, can occur when the sample mass is too large. Only a few studies in the literature quantify the threshold for the initial mass, above which heat transfer effects are significant. Here, we systematically analyse the role of heat transfer in TGA measurements, review existing formulations, and provide a novel threshold for the maximum sample mass. We focus on the natural polymer cellulose, a surrogate for biomass, and split the problem into heat transfer within the sample (intraparticle) and between the sample and the fluid (interparticle). Using dimensional analysis we derive two upper bound thresholds for the initial sample mass as a function of heating. One threshold is calculated based on interparticle heat transfer and depends on flow and heating conditions as well as material and fluid properties. The other is calculated based on intraparticle heat transfer and depends on heating conditions and material properties. Both thresholds were validated with measurements and previous studies from the literature. Comparing both thresholds shows that the maximum sample mass in a TGA is dictated by interparticle heat transfer and rapidly reduces with heating rate from 1.8 mg at 10 K/min to 0.15 mg at 50 K/min. These results enable the selection of appropriate sample masses and heating conditions in TGA measurements, which in turn will lead to a better understanding of polymer pyrolysis.", "keywords": ["TGA", "thermal lag", "Mechanical Engineering", "02 engineering and technology", "0915 Interdisciplinary Engineering", "chemistry", "7. Clean energy", "Industrial and Manufacturing Engineering", "cellulose", "Computer Science Applications", "0201 civil engineering", "12. Responsible consumption", "kinetics", "13. Climate action", "transport", "TJ1-1570", "General Materials Science", "Mechanical engineering and machinery", "0204 chemical engineering", "0913 Mechanical Engineering"], "contacts": [{"organization": "Richter, F, Rein, G,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.3389/fmech.2018.00018"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Mechanical%20Engineering", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmech.2018.00018", "name": "item", "description": "10.3389/fmech.2018.00018", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmech.2018.00018"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-11-20T00:00:00Z"}}, {"id": "10773/25427", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:26:06Z", "type": "Journal Article", "created": "2018-01-07", "title": "Toxicokinetics of Zn and Cd in the earthworm Eisenia andrei exposed to metal-contaminated soils under different combinations of air temperature and soil moisture content", "description": "This study evaluated how different combinations of air temperature (20\u202f\u00b0C and 25\u202f\u00b0C) and soil moisture content (50% and 30% of the soil water holding capacity, WHC), reflecting realistic climate change scenarios, affect the bioaccumulation kinetics of Zn and Cd in the earthworm Eisenia andrei. Earthworms were exposed for 21\u202fd to two metal-contaminated soils (uptake phase), followed by 21\u202fd incubation in non-contaminated soil (elimination phase). Body Zn and Cd concentrations were checked in time and metal uptake (k1) and elimination (k2) rate constants determined; metal bioaccumulation factor (BAF) was calculated as k1/k2. Earthworms showed extremely fast uptake and elimination of Zn, regardless of the exposure level. Climate conditions had no major impacts on the bioaccumulation kinetics of Zn, although a tendency towards lower k1 and k2 values was observed at 25\u00a0\u00b0C\u00a0+\u00a030% WHC. Earthworm Cd concentrations gradually increased with time upon exposure to metal-contaminated soils, especially at 50% WHC, and remained constant or slowly decreased following transfer to non-contaminated soil. Different combinations of air temperature and soil moisture content changed the bioaccumulation kinetics of Cd, leading to higher k1 and k2 values for earthworms incubated at 25\u00a0\u00b0C\u00a0+\u00a050% WHC and slower Cd kinetics at 25\u00a0\u00b0C\u00a0+\u00a030% WHC. This resulted in greater BAFs for Cd at warmer and drier environments which could imply higher toxicity risks but also of transfer of Cd within the food chain under the current global warming perspective.", "keywords": ["Soil invertebrates", "Bioavailability", "Climate Change", "0211 other engineering and technologies", "02 engineering and technology", "Global Warming", "01 natural sciences", "Soil", "Metals", " Heavy", "SDG 13 - Climate Action", "Climate change", "Animals", "Soil Pollutants", "Oligochaeta", "0105 earth and related environmental sciences", "2. Zero hunger", "Triazines", "Temperature", "Water", "Bioaccumulation", "Mining wastes", "Toxicokinetics", "Zinc", "Heavy metals", "Metals", "13. Climate action", "Environmental Pollution", "Cadmium"]}, "links": [{"href": "https://doi.org/10773/25427"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10773/25427", "name": "item", "description": "10773/25427", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10773/25427"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-04-01T00:00:00Z"}}, {"id": "2965037", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:27:20Z", "type": "Journal Article", "created": "2002-12-28", "title": "Suppressive characteristics of the cultured umbilical cord blood lymphocytes: Enhanced suppression of non specific MLR by short term cultured peripheral blood and rosetted lymphocytes", "description": "We have used the mixed leukocyte reaction assay (MLR) to compare the non-specific suppressor activity of fresh and short-term cultured peripheral blood rosetted lymphocytes from human umbilical cord blood. To a one way MLR between adult responders and irradiated adult stimulator cells, we added adult or cord blood mononuclear cells. Cord-blood derived mononuclear cells were more potent suppressors of the MLR than the adult peripheral blood mononuclear cells. When the fresh cord blood T cell fraction was separated from non-T cells by rosetting, the frequency and capacity of suppression fell, suggesting a role of non-T cells in this phenomenon. However, short-term culture (up to nine days) of cord blood derived T cells in the absence of mitogen resulted in a significant increase in their suppressive characteristics. Maternal cells were not used in any of these assays and the suppression was non specific. There was no HLA restriction to the response. The cord blood lymphocytes responded poorly to alloantigen when compared to the adult lymphocytes. In addition, there was a correlation between the allogeneic proliferative response and the suppressive capacity of the cord blood cells. Such a correlation was not found with the adult peripheral blood lymphocytes.", "keywords": ["Adult", "0301 basic medicine", "Rosette Formation", "Infant", " Newborn", "In Vitro Techniques", "Fetal Blood", "Lymphocyte Activation", "T-Lymphocytes", " Regulatory", "Kinetics", "03 medical and health sciences", "0302 clinical medicine", "Humans", "Lymphocyte Culture Test", " Mixed", "Cells", " Cultured"], "contacts": [{"organization": "L M, Noh, M M, Khan, K L, Melmon,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/2965037"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Developmental%20%26amp%3B%20Comparative%20Immunology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2965037", "name": "item", "description": "2965037", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2965037"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1988-01-01T00:00:00Z"}}, {"id": "16698151", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:26:24Z", "type": "Journal Article", "created": "2006-05-19", "title": "Intestinal anti-inflammatory activity of combined quercitrin and dietary olive oil supplemented with fish oil, rich in EPA and DHA (n-3) polyunsaturated fatty acids, in rats with DSS-induced colitis", "description": "Previous studies have described the intestinal anti-inflammatory effects exerted by the bioflavonoid quercitrin (QR) and by an n-3 polyunsaturated fatty acids (PUFA)-enriched diet in experimental models of rat colitis. The aim of the present study was to test if the combination of both treatments would result in an improvement in the intestinal anti-inflammatory effect achieved separately.Colitis was induced in female Wistar rats by incorporating dextran sodium sulfate (DSS) in drinking water at 5% (w/v) for 5 days and at 2% (w/v) for the following 10 days. Five groups of rats (n=10) were used: two of them received an olive-oil-based diet with fish oil, rich in n-3 PUFA (FO diet) for 2 weeks before colitis induction and until the end of the experiment, and one of those also was administered daily QR (1mg/kg, PO), starting when DSS concentration was changed. DSS colitis was induced in other two groups fed with standard rat diet, one of them being administered QR as before. A non-colitic group fed standard diet was also included. After that period, the rats were sacrificed and colonic damage was assessed both histologically and biochemically.The concurrent administration of FO diet and QR exhibited an intestinal anti-inflammatory effect, as evidenced by a significant improvement of all biochemical parameters of colonic inflammation assayed in comparison with non-treated colitic rats. Thus, both colonic myeloperoxidase (MPO) and alkaline phosphatase (AP) activities were significantly reduced compared with untreated colitic rats. In addition, a complete restoration of colonic glutathione content, which was depleted as a consequence of the colonic insult, was obtained in rats treated with QR plus FO diet; this content was even higher than that obtained when colitic rats were treated with FO diet alone. When compared with the control colitic group, the combined treatment was also associated with a lower colonic nitric oxide synthase and cyclooxygenase-2 expression as well as with a significant reduction in different colonic proinflammatory mediators assayed, i.e. leukotriene B(4), tumor necrosis factor alpha and interleukin 1beta, showing a significantly greater inhibitory effect of the latter in comparison with rats receiving FO diet without the flavonoid.These results support the potential synergism between the administration of the flavonoid and the incorporation of olive oil and n-3 PUFA to the diet for the treatment of these intestinal inflammatory disorders.", "keywords": ["0301 basic medicine", "0303 health sciences", "Docosahexaenoic Acids", "Colon", "Dextran Sulfate", "Anti-Inflammatory Agents", "Alkaline Phosphatase", "Colitis", "Diet", "Rats", "3. Good health", "Kinetics", "03 medical and health sciences", "Fish Oils", "Eicosapentaenoic Acid", "Dietary Supplements", "Fatty Acids", " Omega-3", "Animals", "Plant Oils", "Female", "Quercetin", "Rats", " Wistar", "Olive Oil", "Peroxidase"]}, "links": [{"href": "https://doi.org/16698151"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Clinical%20Nutrition", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "16698151", "name": "item", "description": "16698151", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/16698151"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-06-01T00:00:00Z"}}, {"id": "2117/367719", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:26:56Z", "type": "Journal Article", "created": "2022-04-08", "title": "Multiphase processes in the EC-Earth model and their relevance to the atmospheric oxalate, sulfate, and iron cycles", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Abstract. Understanding how multiphase processes affect the iron-containing aerosol cycle is key to predicting ocean biogeochemistry changes and hence the feedback effects on climate. For this work, the EC-Earth Earth system model in its climate\u2013chemistry configuration is used to simulate the global atmospheric oxalate (OXL), sulfate (SO42-), and iron (Fe) cycles after incorporating a comprehensive representation of the multiphase chemistry in cloud droplets and aerosol water. The model considers a detailed gas-phase chemistry scheme, all major aerosol components, and the partitioning of gases in aerosol and atmospheric water phases. The dissolution of Fe-containing aerosols accounts kinetically for the solution's acidity, oxalic acid, and irradiation. Aerosol acidity is explicitly calculated in the model, both for accumulation and coarse modes, accounting for thermodynamic processes involving inorganic and crustal species from sea salt and dust. Simulations for present-day conditions (2000\u20132014) have been carried out with both EC-Earth and the atmospheric composition component of the model in standalone mode driven by meteorological fields from ECMWF's ERA-Interim reanalysis. The calculated global budgets are presented and the links between the (1) aqueous-phase processes, (2) aerosol dissolution, and (3) atmospheric composition are demonstrated and quantified. The model results are supported by comparison to available observations. We obtain an average global OXL net chemical production of 12.615\u2009\u00b1\u20090.064\u2009Tg\u2009yr\u22121 in EC-Earth, with glyoxal being by far the most important precursor of oxalic acid. In comparison to the ERA-Interim simulation, differences in atmospheric dynamics and the simulated weaker oxidizing capacity in EC-Earth overall result in a \u223c\u200930\u2009% lower OXL source. On the other hand, the more explicit representation of the aqueous-phase chemistry in EC-Earth compared to the previous versions of the model leads to an overall \u223c\u200920\u2009% higher sulfate production, but this is still well correlated with atmospheric observations. The total Fe dissolution rate in EC-Earth is calculated at 0.806\u2009\u00b1\u20090.014\u2009Tg\u2009yr\u22121 and is added to the primary dissolved Fe (DFe) sources from dust and combustion aerosols in the model (0.072\u2009\u00b1\u20090.001\u2009Tg\u2009yr\u22121). The simulated DFe concentrations show a satisfactory comparison with available observations, indicating an atmospheric burden of \u223c0.007\u2009Tg, resulting in an overall atmospheric deposition flux into the global ocean of 0.376\u2009\u00b1\u20090.005\u2009Tg\u2009yr\u22121, which is well within the range reported in the literature. All in all, this work is a first step towards the development of EC-Earth into an Earth system model with fully interactive bioavailable atmospheric Fe inputs to the marine biogeochemistry component of the model.</p></article>", "keywords": ["550", "Iron", "Atmospheric deposition", "Aerosols atmosf\u00e8rics", "01 natural sciences", "Biogeoqu\u00edmica", "\u00c0rees tem\u00e0tiques de la UPC::Desenvolupament hum\u00e0 i sostenible::Enginyeria ambiental", "Life Science", "Aqueous solution", "Oxalate", "Aerosol", "Reaction kinetics", "0105 earth and related environmental sciences", "QE1-996.5", "Acidity", "500", "Geology", "Dust", "Climate feedback", "Biogeochemistry", "15. Life on land", "Atmospheric aerosols", "Sulfate", ":Desenvolupament hum\u00e0 i sostenible::Enginyeria ambiental [\u00c0rees tem\u00e0tiques de la UPC]", "13. Climate action", "Sea salt", "Thermodynamics", "Irradiation", "Dissolution"]}, "links": [{"href": "https://gmd.copernicus.org/articles/15/3079/2022/gmd-15-3079-2022.pdf"}, {"href": "https://doi.org/2117/367719"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geoscientific%20Model%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2117/367719", "name": "item", "description": "2117/367719", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2117/367719"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-08T00:00:00Z"}}, {"id": "2164/22267", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:26:59Z", "type": "Journal Article", "created": "2023-10-09", "title": "Interactive effects of microbial functional diversity and carbon availability on decomposition \u2013 A theoretical exploration", "description": "<div><p>Microbial functional diversity in litter and soil has been hypothesized to affect the rate of decomposition of organic matter and other soil ecosystem functions. However, there are no clear theoretical expectations on how these effects might change with substrate availability, heterogeneity in the substrate chemistry, and different aspects of functional diversity itself (number of microbial groups vs. distribution of functional traits). To explore how these factors shape the decomposition-diversity relation, we carry out numerical experiments using a flexible reaction network comprising microbial processes and interactions with bioavailable carbon (extracellular degradation, uptake, respiration, growth, and mortality), and ecological processes (competition among the different groups). We also considered diverse carbon substrates, in terms of varying nominal oxidation state of carbon (NOSC). The reaction network was used to test the effects of (i) number of microbial groups, (ii) number of carbon pools, (iii) microbial functional diversity, and (iv) amount of bioavailable carbon. We found that the decomposition rate constant increases with increasing substrate concentration and heterogeneity, as well as with increasing microbial functional diversity or variance of microbial traits, albeit these biological factors are less important. The multivariate dependence of the decomposition rate constant (and other decomposition and microbial growth metrics) on substrate and microbial factors can be described using power laws with exponents lower than one, indicating that diversity effects on decomposition and microbial growth are reduced at high substrate concentration and heterogeneity, or at high microbial diversity.</p></div>", "keywords": ["Microbial model Organic matter decomposition Organic carbon oxidation state Decomposition kinetics Microbial diversity", "[SDE] Environmental Sciences", "2. Zero hunger", "Organic matter decomposition", "Supplementary Information", "GE", "Ecology", "330", "GF Human ecology. Anthropogeography", "15. Life on land", "ta4112", "GF", "6. Clean water", "12. Responsible consumption", "Ecological Modelling", "Decomposition kinetics", "13. Climate action", "Microbial functional trait", "Microbial diversity-function relation", "Microbial model", "GE Environmental Sciences", "Organic carbon oxidation state"]}, "links": [{"href": "https://doi.org/2164/22267"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecological%20Modelling", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2164/22267", "name": "item", "description": "2164/22267", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2164/22267"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-01T00:00:00Z"}}, {"id": "25590944", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:27:07Z", "type": "Journal Article", "created": "2014-12-26", "title": "The effect of excipients on the stability and phase transition rate of xylazine hydrochloride and zopiclone", "description": "The compatibility of thermodynamically unstable polymorph of two active pharmaceutical compounds (xylazine hydrochloride form X and zopiclone form C) with different excipients was investigated. The effects of the excipient and its amount in the sample on the thermal properties and possible chemical interactions were studied. The most commonly used excipients in the pharmaceutical industry - calcium carbonate, lactose hydrate, cellulose, magnesium stearate hydrate and calcium stearate hydrate were selected for this study. The dependence of the phase transition rate from an unstable to a more stable polymorph on the excipients and their amounts in the initial sample was analysed at 80\u00b0C, and the corresponding phase transition rate constants were calculated.", "keywords": ["Xylazine", "Drug Industry", "Temperature", "01 natural sciences", "Phase Transition", "Piperazines", "0104 chemical sciences", "3. Good health", "Excipients", "Kinetics", "03 medical and health sciences", "0302 clinical medicine", "Drug Stability", "Thermodynamics", "Azabicyclo Compounds"]}, "links": [{"href": "https://doi.org/25590944"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Pharmaceutical%20and%20Biomedical%20Analysis", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "25590944", "name": "item", "description": "25590944", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/25590944"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-03-01T00:00:00Z"}}, {"id": "3167100", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-27T16:27:41Z", "type": "Journal Article", "created": "2003-04-07", "title": "In vitro drug delivery mediated by ecto-NAD+-glycohydrolase ligand-targeted liposomes", "description": "We have studied the growth-inhibitory potency of methotrexate and methotrexate-gamma-aspartate encapsulated in liposomes conjugated to ligands of ecto-NAD+-glycohydrolase (Salord, J. et al., Biochim. Biophys. Acta 886 (1986) 64-75). The ability of targeted liposomes to enhance growth inhibition, which amounted to a 4-fold reduction of the drug concentration required to inhibit cell growth by 50% as compared to nontargeted liposomes, was observed only with cells expressing this ecto-enzyme activity, i.e., Swiss 3T3 fibroblasts and RAJI, a Burkitt-type lymphoma cell line. Delivery of the encapsulated drugs was inhibited by NH4Cl and varied with the endocytic capacity of the cells. Only small unilamellar vesicles affected the growth of the lymphoma cells, whereas the fibroblasts were more sensitive to large unilamellar vesicles. With vesicles of appropriate size, there was a good correlation between the specific binding of the targeted liposomes to cells and drug delivery. Our results suggest that ecto-NAD+-glycohydrolase can provide a recognition site on target cells and mediate the internalization of targeted liposomes by a mechanism most probably related to adsorptive endocytosis.", "keywords": ["0301 basic medicine", "Drug Carriers", "0303 health sciences", "Antineoplastic Agents", "Fibroblasts", "NAD", "Burkitt Lymphoma", "Deoxyuridine", "Ammonium Chloride", "Cell Line", "3. Good health", "Kinetics", "Mice", "03 medical and health sciences", "Methotrexate", "NAD+ Nucleosidase", "Liposomes", "Tumor Cells", " Cultured", "Animals", "Humans", "Sulfhydryl Compounds", "N-Glycosyl Hydrolases", "Cell Division"], "contacts": [{"organization": "J, Salord, F, Schuber,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/3167100"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biochimica%20et%20Biophysica%20Acta%20%28BBA%29%20-%20Molecular%20Cell%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3167100", "name": "item", "description": "3167100", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3167100"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1988-09-01T00:00:00Z"}}, {"id": "PMC11199918", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:30:20Z", "type": "Journal Article", "created": "2024-04-18", "title": "Parameter grouping and co-estimation in physiologically based kinetic models using genetic algorithms", "description": "Abstract                <p>Physiologically based kinetic (PBK) models are widely used in pharmacology and toxicology for predicting the internal disposition of substances upon exposure, voluntarily or not. Due to their complexity, a large number of model parameters need to be estimated, either through in silico tools, in vitro experiments, or by fitting the model to in vivo data. In the latter case, fitting complex structural models on in vivo data can result in overparameterization and produce unrealistic parameter estimates. To address these issues, we propose a novel parameter grouping approach, which reduces the parametric space by co-estimating groups of parameters across compartments. Grouping of parameters is performed using genetic algorithms and is fully automated, based on a novel goodness-of-fit metric. To illustrate the practical application of the proposed methodology, two case studies were conducted. The first case study demonstrates the development of a new PBK model, while the second focuses on model refinement. In the first case study, a PBK model was developed to elucidate the biodistribution of titanium dioxide (TiO2) nanoparticles in rats following intravenous injection. A variety of parameter estimation schemes were employed. Comparative analysis based on goodness-of-fit metrics demonstrated that the proposed methodology yields models that outperform standard estimation approaches, while utilizing a reduced number of parameters. In the second case study, an existing PBK model for perfluorooctanoic acid (PFOA) in rats was extended to incorporate additional tissues, providing a more comprehensive portrayal of PFOA biodistribution. Both models were validated through independent in vivo studies to ensure their reliability.</p", "keywords": ["Titanium", "Male", "0301 basic medicine", "Fluorocarbons", "Models", " Biological", "Biotransformation", " Toxicokinetics", " and Pharmacokinetics", "Rats", "Kinetics", "03 medical and health sciences", "0302 clinical medicine", "Animals", "Nanoparticles", "Tissue Distribution", "Computer Simulation", "Caprylates", "Algorithms"]}, "links": [{"href": "https://academic.oup.com/toxsci/article-pdf/200/1/31/58318724/kfae051.pdf"}, {"href": "https://doi.org/PMC11199918"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Toxicological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC11199918", "name": "item", "description": "PMC11199918", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC11199918"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-04-19T00:00:00Z"}}, {"id": "PMC3500623", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:30:24Z", "type": "Journal Article", "created": "2012-07-19", "title": "Probing exchange kinetics and atomic resolution dynamics in high-molecular-weight complexes using dark-state exchange saturation transfer NMR spectroscopy", "description": "We present the protocol for the measurement and analysis of dark-state exchange saturation transfer (DEST), a novel solution NMR method for characterizing, at atomic resolution, the interaction between an NMR-'visible' free species and an NMR-'invisible' species transiently bound to a very high-molecular-weight (>1 MDa) macromolecular entity. The reduced rate of reorientational motion in the bound state that precludes characterization by traditional NMR methods permits the observation of DEST. (15)N-DEST profiles are measured on a sample comprising the dark state in exchange with an NMR-visible species; in addition, the difference (\u0394R(2)) in (15)N transverse relaxation rates between this sample and a control sample comprising only the NMR-visible species is also obtained. The (15)N-DEST and \u0394R(2) data for all residues are then fitted simultaneously to the McConnell equations for various exchange models describing the residue-specific dynamics in the bound state(s) and the interconversion rate constants. Although the length of the experiments depends strongly on sample conditions, approximately 1 week of NMR spectrometer time was sufficient for full characterization of samples of amyloid-\u03b2 (A\u03b2) at concentrations of ~100 \u03bcM.", "keywords": ["Molecular Weight", "0301 basic medicine", "Kinetics", "0303 health sciences", "03 medical and health sciences", "Amyloid beta-Peptides", "Time Factors", "Nitrogen Isotopes", "Macromolecular Substances", "Nuclear Magnetic Resonance", " Biomolecular", "Software"]}, "links": [{"href": "https://doi.org/PMC3500623"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Protocols", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC3500623", "name": "item", "description": "PMC3500623", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC3500623"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-07-19T00:00:00Z"}}, {"id": "2a3d1b59-350c-4db6-a28c-ed31407c1fa4", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[5.81, 47.26], [5.81, 54.76], [15.77, 54.76], [15.77, 47.26], [5.81, 47.26]]]}, "properties": {"themes": [{"concepts": [{"id": "farming"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "Soil"}], "scheme": "AGROVOC Multilingual agricultural thesaurus"}, {"concepts": [{"id": "opendata"}], "scheme": "Individual"}, {"concepts": [{"id": "Boden"}, {"id": "phosphorus"}, {"id": "desorption"}, {"id": "reaction kinetics"}], "scheme": "GEMET - INSPIRE themes, version 1.0"}], "license": "CC BY", "rights": "Restrictions applied to assure the protection of privacy or intellectual property, and any special restrictions or limitations or warnings on using the resource or metadata. Reports, articles, papers, scientific and non - scientific works of any form, including tables, maps, or any other kind of output, in printed or electronic form, based in whole or in part on the data supplied, must contain an acknowledgement of the form: \"Data reused from the BonaRes Data Centre www.bonares.de. This data were created as part of the InnoSoilPhos's research activities.\" Although every care has been taken in preparing and testing the data, the InnoSoilPhos and the BonaRes Data Centre cannot guarantee that the data are correct; neither does the InnoSoilPhos and the BonaRes Data Centre accept any liability whatsoever for any error, missing data or omission in the data, or for any loss or damage arising from its use. The InnoSoilPhos and BonaRes Data Centre will not be responsible for any direct or indirect use which might be made of the data.", "updated": "2023-03-23", "type": "Dataset", "created": "2021-02-15", "language": "eng", "title": "Kinetics of P-desorption from Fe- and Al-hydroxides using KCl, KNO3, histidine, and malic acid", "description": "The dataset describes phosphorus kinetic desorption data from crystalline and amorphous Fe- and Al-hydroxides with reaction times of 2, 6, 24, 48, 168, and 336 h by using 0.005 and 0.05 M KCl, KNO3, histidine, and malic acid at pH 6.\n\nResearch domain: Plant Nutrition\n\nResearch question: How do organic and inorganic compounds affect potential phosphorus mobilization from single and binary Fe- and Al-hydroxides?", "formats": [{"name": "CSV"}], "keywords": ["Soil", "opendata", "Boden", "phosphorus", "desorption", "reaction kinetics"], "contacts": [{"name": "Stella Gypser", "organization": "Brandenburgische Technische Universit\u00e4t Cottbus-Senftenberg", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "stella.gypser@b-tu.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": "https://orcid.org", "protocol": null, "protocol_url": "", "name": "0000-0002-4765-8067", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Peter Leinweber", "organization": "Universit\u00e4t Rostock", "position": null, "roles": ["projectLeader"], "phones": [{"value": null}], "emails": [{"value": "peter.leinweber@uni-rostock.de"}], "addresses": [{"deliveryPoint": [null], "city": null, "administrativeArea": null, "postalCode": null, "country": null}], "links": [{"href": {"url": "https://orcid.org", "protocol": null, "protocol_url": "", "name": "0000-0003-3776-2984", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "BonaRes Data Center", "organization": "Leibniz Centre for Agricultural Landscape Research (ZALF)", "position": "Research Platform 'Data Analysis & Simulation' - 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