{"type": "FeatureCollection", "features": [{"id": "10.1016/j.jplph.2017.03.003", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:15:59Z", "type": "Journal Article", "created": "2017-03-09", "title": "Drought stress obliterates the preference for ammonium as an N source in the C 4 plant Spartina alterniflora", "description": "The C4 grass Spartina alterniflora is known for its unique salt tolerance and strong preference for ammonium (NH4+) as a nitrogen (N) source. We here examined whether Spartina's unique preference for NH4+ results in improved performance under drought stress. Manipulative greenhouse experiments were carried out to measure the effects of variable water availability and inorganic N sources on plant performance (growth, photosynthesis, antioxidant, and N metabolism). Drought strongly reduced leaf number and area, plant fresh and dry weight, and photosynthetic activity on all N sources, but the reduction was most pronounced on NH4+. Indeed, the growth advantage seen on NH4+ in the absence of drought, producing nearly double the biomass compared to growth on NO3-, was entirely obliterated under both intermediate and severe drought conditions (50 and 25% field capacity, respectively). Both fresh and dry weight became indistinguishable among N sources under drought. Major markers of the antioxidant capacity of the plant, the activities of the enzymes superoxide dismutase, catalase, ascorbate peroxidase, and glutathione reductase, showed higher constitutive levels on NH4+. Catalase and glutathione reductase were specifically upregulated in NH4+-fed plants with increasing drought stress. This upregulation, however, failed to protect the plants from drought stress. Nitrogen metabolism was characterized by lower constitutive levels of glutamine synthetase in NH4+-fed plants, and a rise in glutamate dehydrogenase (GDH) activity under drought, accompanied by elevated proline levels in leaves. Our results support postulates on the important role of GDH induction, and its involvement in the synthesis of compatible solutes, under abiotic stress. We show that, despite this metabolic shift, S. alterniflora's sensitivity to drought does not benefit from growth on NH4+ and that the imposition of drought stress equalizes all N-source-related growth differences observed under non-drought conditions.", "keywords": ["0106 biological sciences", "2. Zero hunger", "Nitrogen", "Superoxide Dismutase", "15. Life on land", "Catalase", "Poaceae", "01 natural sciences", "Antioxidants", "6. Clean water", "Droughts", "Plant Leaves", "Ascorbate Peroxidases", "Glutamate Dehydrogenase", "Gene Expression Regulation", " Plant", "Ammonium Compounds", "Photosynthesis"]}, "links": [{"href": "https://doi.org/10.1016/j.jplph.2017.03.003"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Plant%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jplph.2017.03.003", "name": "item", "description": "10.1016/j.jplph.2017.03.003", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jplph.2017.03.003"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-06-01T00:00:00Z"}}, {"id": "10.1007/s00248-005-5156-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:14:27Z", "type": "Journal Article", "created": "2006-01-02", "title": "Microbial Responses To Long-Term N Deposition In A Semiarid Grassland", "description": "Nitrogen (N) enrichment of the biosphere is an expanding problem to which arid ecosystems may be particularly sensitive. In semiarid grasslands, scarce precipitation uncouples plant and microbial activities, and creates within the soil a spatial mosaic of rhizosphere and cyanobacterial crust communities. We investigated the impact of elevated N deposition on these soil microbial communities at a grama-dominated study site located incentral New Mexico (USA). The study plots were established in 1995 and receive 10 kg ha(-1) year(-1) of supplemental N in the form of NH(4)NO(3). Soil samples were collected in July 2004, following 2 years of severe drought, and again in March 2005 following a winter of record high precipitation. Soils were assayed for potential activities of 20 extracellular enzymes and N(2)O production. The rhizosphere and crust-associated soils had peptidase and peroxidase potentials that were extreme in relation to those of temperate soils. N addition enhanced glycosidase and phosphatase activities and depressed peptidase. In contrast to temperate forest soils, oxidative enzyme activity did not respond to N treatment. Across sampling dates, extracellular enzyme activity responses correlated with inorganic N concentrations. N(2)O generation did not vary significantly with soil cover or N treatment. Microbial responses to N deposition in this semiarid grassland were distinct from those of forest ecosystems and appear to be modulated by inorganic N accumulation, which is linked to precipitation patterns.", "keywords": ["2. Zero hunger", "Principal Component Analysis", "Ecology", "Nitrogen", "Climate", "beta-Glucosidase", "Nitrous Oxide", "04 agricultural and veterinary sciences", "15. Life on land", "Poaceae", "01 natural sciences", "Carbon", "6. Clean water", "Enzymes", "Trees", "Leucyl Aminopeptidase", "Soil", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Soil Microbiology", "Peroxidase", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1007/s00248-005-5156-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00248-005-5156-y", "name": "item", "description": "10.1007/s00248-005-5156-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00248-005-5156-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-01-01T00:00:00Z"}}, {"id": "10.1007/s10533-004-7112-1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:14:42Z", "type": "Journal Article", "created": "2005-11-04", "title": "Extracellular Enzyme Activities And Soil Organic Matter Dynamics For Northern Hardwood Forests Receiving Simulated Nitrogen Deposition", "description": "Anthropogenic nitrogen enrichment alters decomposition processes that control the flux of carbon (C) and nitrogen (N) from soil organic matter (SOM) pools. To link N-driven changes in SOM to microbial responses, we measured the potential activity of several extracellular enzymes involved in SOM degradation at nine experimental sites located in northern Michigan. Each site has three treatment plots (ambient, +30 and +80 kg N ha 1 y 1 ). Litter and soil samples were collected on five dates over the third growing season of N treatment. Phenol oxidase, peroxidase and cellobiohydrolase activities showed significant responses to N additions. In the Acer saccha- rum-Tilia americana ecosystem, oxidative activity was 38% higher in the litter horizon of high N treatment plots, relative to ambient plots, while oxidative activity in mineral soil showed little change. In the A. saccharum-Quercus rubra and Q. velutina-Q. alba ecosystems, oxidative activities declined in both litter (15 and 23%, respectively) and soil (29 and 38%, respectively) in response to high N treatment while cellobiohydrolase activity increased (6 and 39% for litter, 29 and 18% for soil, respectively). Over 3 years, SOM content in the high N plots has decreased in the Acer-Tilia ecosystem and increased in the two Quercus ecosystems, relative to ambient plots. For all three ecosystems, differences in SOM content in relation to N treatment were directly related (r 2 = 0.92) to an enzyme activity factor that included both oxidative and hydrolytic enzyme responses.", "keywords": ["Soil Science & Conservation", "Decomposition", "Science", "Ecology and Evolutionary Biology", "Terrestrial Pollution", "Natural Resources and Environment", "Molecular", "04 agricultural and veterinary sciences", "15. Life on land", "Biochemistry", "Phenol Oxidase", "Geochemistry", "Cellulase", "Soil Organic Matter", "Health Sciences", "0401 agriculture", " forestry", " and fisheries", "Nitrogen Deposition", "Cellular and Developmental Biology", "General", "Extracellular Enzyme Activity", "Geosciences"]}, "links": [{"href": "https://doi.org/10.1007/s10533-004-7112-1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biogeochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s10533-004-7112-1", "name": "item", "description": "10.1007/s10533-004-7112-1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s10533-004-7112-1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-08-01T00:00:00Z"}}, {"id": "10.1016/j.agee.2009.05.004", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:15:07Z", "type": "Journal Article", "created": "2009-06-10", "title": "Long-Term Effects Of Conservation Tillage On Organic Fractions In Two Soils In Southwest Of Spain", "description": "Open AccessAuthors want to thank to Comisi\u00f3n Interministerial de Ciencia y Tecnolog\u00eda (CICYT) through project (AGL2005-2423), and to the Education and Science Ministry for financial support to the project INIA (RTA2006-00058-CO3-01 y 02), which allowed this work to be carried out. Also the complementary funding by the IFAPA through grant FIC07-06 is acknowledged. S. Melero thanks to CSIC for her contract through program \u2018\u2018JAE-Doc\u2019\u2019 and R. L\u00f3pez thanks to Science and Technology Ministry for funding her grant.", "keywords": ["2. Zero hunger", "b-Glucosidase activity", "Microbial biomass carbon (MBC) to TOC", "Direct drilling", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Permanganate oxidizable carbon", "Ratio", "Diphenol oxidase activity", "6. Clean water", "Tillage"]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2009.05.004"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2009.05.004", "name": "item", "description": "10.1016/j.agee.2009.05.004", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2009.05.004"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-09-01T00:00:00Z"}}, {"id": "10.1016/j.apsoil.2016.11.003", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:15:20Z", "type": "Journal Article", "created": "2016-11-11", "title": "Contrasting Response Of Summer Soil Respiration And Enzyme Activities To Long-Term Warming And Drought In A Wet Shrubland (Ne Wales, Uk)", "description": "Open Access5 p\u00e1ginas.-- 2 figuras.-- 2 tablas.-- 39 referencias", "keywords": ["Take urgent action to combat climate change and its impacts", "phenol-oxidase", "soil C", "Calluna vulgaris", "N [Microbial C]", "04 agricultural and veterinary sciences", "15. Life on land", "Soil C", "6. Clean water", "climate change", "13. Climate action", "\u03b2-glucosidase", "Climate change", "0401 agriculture", " forestry", " and fisheries", "Microbial C:N", "http://metadata.un.org/sdg/13", "microbial C:N", "Phenol-oxidase"]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2016.11.003"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2016.11.003", "name": "item", "description": "10.1016/j.apsoil.2016.11.003", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2016.11.003"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-02-01T00:00:00Z"}}, {"id": "10.1016/j.biortech.2012.01.120", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:15:23Z", "type": "Journal Article", "created": "2012-02-03", "title": "Chemical And Biochemical Characterisation Of Biochar-Blended Composts Prepared From Poultry Manure", "description": "The aim of this study was to assess the effect of a 2% (v/v) addition of biochar on the quality of a composting mixture prepared with poultry manure and different local organic wastes (rice husk and apple pomace). Compost quality was evaluated in terms of typical stabilisation indices, the microbial biomass and selected enzymatic activities related to the C, N and P cycles. The main effects of biochar were a 10% increase in C captured by humic substance extraction and a 30% decrease of water-soluble C, due to an enhanced degradation rate and/or the sorption of these labile compounds into the biochar. The urease, phosphatase and polyphenol oxidase activities of the biochar-blended compost were enhanced by 30-40% despite the lower amount of microbial biomass. Denaturing gradient gel electrophoresis revealed a higher diversity of fungi in biochar-amended compost, suggesting a change in microbial composition compared to the unamended compost.", "keywords": ["2. Zero hunger", "Hydrolysis", "04 agricultural and veterinary sciences", "Urease", "01 natural sciences", "Phosphoric Monoester Hydrolases", "Poultry", "Manure", "Soil", "Animals", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Catechol Oxidase", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.biortech.2012.01.120"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioresource%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biortech.2012.01.120", "name": "item", "description": "10.1016/j.biortech.2012.01.120", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biortech.2012.01.120"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-04-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2013.03.034", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:16:14Z", "type": "Journal Article", "created": "2013-04-18", "title": "Microbial Enzymatic Responses To Drought And To Nitrogen Addition In A Southern California Grassland", "description": "Microbial enzymes play a fundamental role in ecosystem processes and nutrient mineralization. Therefore understanding enzyme responses to anthropogenic environmental change is important for predicting ecosystem function in the future. In a previous study, we used a reciprocal transplant design to examine the direct and indirect effects of drought and nitrogen (N) fertilization on litter decomposition in a southern California grassland. This work showed direct and indirect negative effects of drought on decomposition, and faster decomposition by N-adapted microbial communities in N-fertilized plots than in non-fertilized plots. Here we measured microbial biomass and the activities of nine extracellular enzymes to examine the microbial and enzymatic mechanisms underlying litter decomposition responses to drought and N. We hypothesized that changes in fungal biomass and potential extracellular enzyme activity (EEA) would relate directly to litter decomposition responses. We also predicted that fungal biomass would dominate the microbial community in our semi-arid study site. However, we found that the microbial community was dominated by bacterial biomass, and that bacteria responded negatively to drought treatment. In contrast to patterns in decomposition, fungal biomass and most potential EEA increased in direct response to drought treatment. Potential EEA was also decoupled from the decomposition response to N treatment. These results suggest that drought and N alter the efficiencies of EEA, defined as the mass of target substrate lost per unit potential EEA. Enzyme efficiencies declined with drought treatment, possibly because reduced water availability increased enzyme immobilization and reduced diffusion rates. In the N experiment, the efficiencies of \u03b2-glucosidase, \u03b2-xylosidase, and polyphenol oxidase were greater when microbes were transplanted into environments from which they originated. This increase in enzymatic efficiency suggests that microbial enzymes may adapt to their local environment. Overall, our results indicate that drought and N addition may have predictable impacts on the efficiencies of extracellular enzymes, providing a means of linking enzyme potentials with in-situ activities.", "keywords": ["Bacteria", "Drought", "Agricultural and Veterinary Sciences", "Fungi", "Litter decomposition", "Agronomy & Agriculture", "Precipitation", "04 agricultural and veterinary sciences", "Enzyme efficiency", "Biological Sciences", "15. Life on land", "Grassland", "01 natural sciences", "6. Clean water", "Nitrogen fertilization", "Affordable and Clean Energy", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Glucosidase", "Oxidase", "Environmental Sciences", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://escholarship.org/content/qt8fw4q1cf/qt8fw4q1cf.pdf"}, {"href": "https://doi.org/10.1016/j.soilbio.2013.03.034"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2013.03.034", "name": "item", "description": "10.1016/j.soilbio.2013.03.034", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2013.03.034"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-09-01T00:00:00Z"}}, {"id": "11579/199942", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:22:20Z", "type": "Journal Article", "created": "2024-12-26", "title": "Impact of Short-Chain Perfluoropropylene Oxide Acids on Biochemical and Behavioural Parameters in Eisenia fetida (Savigny, 1826)", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Per- and polyfluoroalkyl substances (PFAS) are a class of persistent organic pollutants that pose a growing threat to environmental and human health. Soil acts as a long-term reservoir for PFAS, potentially impacting soil biodiversity and ecosystem function. Earthworms, as keystone species in soil ecosystems, are particularly vulnerable to PFAS exposure. In this study, we investigated the sublethal effects of three short-chain (C4\u2013C6) next-generation perfluoropropylene oxide acids (PFPOAs) on the earthworm Eisenia fetida, using a legacy perfluoroalkyl carboxylic acid (PFCA), perfluorooctanoic acid (PFOA), as a reference. We assessed a suite of biochemical endpoints, including markers for oxidative stress (catalase and superoxide dismutase activity), immunity (phenol oxidase activity), neurotoxicity (acetylcholinesterase activity), and behavioural endpoints (escape test). Results indicate that all tested PFAS, even at sub-micromolar concentrations, elicited significant effects across multiple physiological domains. Interestingly, HFPO-DA demonstrated the most substantial impact across all endpoints tested, indicating broad and significant biochemical and neurotoxic effects. Our findings underscore the potential risks of both legacy and emerging PFAS to soil ecosystems, emphasising the need for further research to understand the long-term consequences of PFAS contamination.</p></article>", "keywords": ["poly and perfluoroalkyl substance", "catalase", "acetylcholinesterase", "phenol oxidase", "RM1-950", "superoxide dismutase", "01 natural sciences", "immune response", "Article", "poly and perfluoroalkyl substances", "RA1190-1270", "Toxicology. Poisons", "628", "Therapeutics. Pharmacology", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.mdpi.com/2039-4713/15/1/2/pdf"}, {"href": "https://doi.org/11579/199942"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Xenobiotics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "11579/199942", "name": "item", "description": "11579/199942", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/11579/199942"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "10.1097/hjh.0b013e32834786f0", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:17:20Z", "type": "Journal Article", "created": "2011-05-10", "title": "Albumin Overload Activates Intrarenal Renin\u2013Angiotensin System Through Protein Kinase C And Nadph Oxidase-Dependent Pathway", "description": "Inappropriate activation of the intrarenal renin-angiotensin system (RAS) plays an important role in the pathogenesis of hypertension and renal injury. However, the underlying mechanisms remain elusive. Proteinuria has been shown to elicit the renal activation of RAS. The present study was performed to test the intracellular signal pathway involved in albumin-triggered activation of RAS.NRK52E cells, a rat renal proximal tubular cell line, were incubated with increased levels of albumin. The rat model of protein overload was established in female Wistar-Kyoto rats that were subjected to unilateral nephrectomy followed by daily intraperitoneal injection of BSA at various doses (0.5, 1.0, and 5.0 g/kg) or combination with intragastric administration of apocynin (100 mg/kg per day), an inhibitor of NADPH oxidase.Exposure of the cells to high levels of albumin activated the RAS through the endocytic receptors megalin and cubilin. High levels of albumin triggered the production of intracellular reactive oxygen species by a protein kinase C (PKC)-NADPH oxidase-dependent pathway and this, in turn, led to activation of nuclear factor-\u03baB (NF-\u03baB) and activation protein-1 (AP-1). Inhibition of PKC or NADPH oxidase abolished albumin-induced activation of RAS. In a protein overload rat model, activation of RAS in renal proximal tubular cells was significantly increased, coincident with activation of PKC, NADPH oxidase, NF-\u03baB, and AP-1. Chronic inhibition of NADPH oxidase by apocynin largely ameliorated intrarenal activation of RAS.Exposure of renal tubular epithelial cells with high levels of albumin triggers activation of RAS via a PKC-NADPH oxidase-dependent pathway.", "keywords": ["Kidney Tubules", " Proximal", "Renin-Angiotensin System", "03 medical and health sciences", "0302 clinical medicine", "Albumins", "Animals", "NADPH Oxidases", "Female", "Rats", " Inbred WKY", "Protein Kinase C", "Cell Line", "Rats", "3. Good health"]}, "links": [{"href": "https://doi.org/10.1097/hjh.0b013e32834786f0"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Hypertension", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1097/hjh.0b013e32834786f0", "name": "item", "description": "10.1097/hjh.0b013e32834786f0", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1097/hjh.0b013e32834786f0"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-07-01T00:00:00Z"}}, {"id": "10.1111/1462-2920.15751", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:17:28Z", "type": "Journal Article", "created": "2021-09-28", "title": "Novel Alcaligenes ammonioxydans sp. nov. from wastewater treatment sludge oxidizes ammonia to N2 with a previously unknown pathway", "description": "Summary<p>Heterotrophic nitrifiers are able to oxidize and remove ammonia from nitrogen\uffe2\uff80\uff90rich wastewaters but the genetic elements of heterotrophic ammonia oxidation are poorly understood. Here, we isolated and identified a novel heterotrophic nitrifier, Alcaligenes ammonioxydans sp. nov. strain HO\uffe2\uff80\uff901, oxidizing ammonia to hydroxylamine and ending in the production of N2 gas. Genome analysis revealed that strain HO\uffe2\uff80\uff901 encoded a complete denitrification pathway but lacks any genes coding for homologous to known ammonia monooxygenases or hydroxylamine oxidoreductases. Our results demonstrated strain HO\uffe2\uff80\uff901 denitrified nitrite (not nitrate) to N2 and N2O at anaerobic and aerobic conditions respectively. Further experiments demonstrated that inhibition of aerobic denitrification did not stop ammonia oxidation and N2 production. A gene cluster (dnfT1RT2ABCD) was cloned from strain HO\uffe2\uff80\uff901 and enabled E. coli accumulated hydroxylamine. Sub\uffe2\uff80\uff90cloning showed that genetic cluster dnfAB or dnfABC already enabled E. coli cells to produce hydroxylamine and further to 15N2 from (15NH4)2SO4. Transcriptome analysis revealed these three genes dnfA, dnfB and dnfC were significantly upregulated in response to ammonia stimulation. Taken together, we concluded that strain HO\uffe2\uff80\uff901 has a novel dnf genetic cluster for ammonia oxidation and this dnf genetic cluster encoded a previously unknown pathway of direct ammonia oxidation (Dirammox) to N2.</p>", "keywords": ["Alcaligenes ammonioxydans sp. nov.", "0301 basic medicine", "106014 Genomics", "Nitrogen", "HYDROXYLAMINE OXIDASE", "direct ammonia oxidation (Dirammox)", "OXIDATION", "REDUCTASE", "Water Purification", "THIOSPHAERA-PANTOTROPHA", "PYRUVIC-OXIME", "03 medical and health sciences", "heterotrophic nitrifier", "Ammonia", "106014 Genomik", "Escherichia coli", "Alcaligenes", "wastewater", "Nitrites", "106022 Mikrobiologie", "HETEROTROPHIC NITRIFICATION", "0303 health sciences", "PURIFICATION", "Sewage", "AEROBIC DENITRIFICATION", "Nitrification", "Aerobiosis", "6. Clean water", "NITROGEN", "FAECALIS", "Denitrification", "106022 Microbiology", "Oxidation-Reduction"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.15751"}, {"href": "https://doi.org/10.1111/1462-2920.15751"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.15751", "name": "item", "description": "10.1111/1462-2920.15751", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.15751"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-09-28T00:00:00Z"}}, {"id": "10.1111/mec.15632", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:17:53Z", "type": "Journal Article", "created": "2020-09-27", "title": "Comparison of markers for the monitoring of freshwater benthic biodiversity through DNA metabarcoding", "description": "Abstract<p>Metabarcoding of bulk or environmental DNA has great potential for biomonitoring of freshwater environments. However, successful application of metabarcoding to biodiversity monitoring requires universal primers with high taxonomic coverage that amplify highly variable, short metabarcodes with high taxonomic resolution. Moreover, reliable and extensive reference databases are essential to match the outcome of metabarcoding analyses with available taxonomy and biomonitoring indices. Benthic invertebrates, particularly insects, are key taxa for freshwater bioassessment. Nevertheless, few studies have so far assessed markers for metabarcoding of freshwater macrobenthos. Here we combined in silico and laboratory analyses to test the performance of different markers amplifying regions in the 18S rDNA (Euka02), 16S rDNA (Inse01) and COI (BF1_BR2\uffe2\uff80\uff90COI) genes, and developed an extensive database of benthic macroinvertebrates of France and Europe, with a particular focus on key insect orders (Ephemeroptera, Plecoptera and Trichoptera). Analyses on 1,514 individuals representing different taxa of benthic macroinvertebrates showed very different amplification success across primer combinations. The Euka02 marker showed the highest universality, while the Inse01 marker showed excellent performance for the amplification of insects. BF1_BR2\uffe2\uff80\uff90COI showed the highest resolution, while the resolution of Euka02 was often limited. By combining our data with GenBank information, we developed a curated database including sequences representing 822 genera. The heterogeneous performance of the different primers highlights the complexity in identifying the best markers, and advocates for the integration of multiple metabarcodes for a more comprehensive and accurate understanding of ecological impacts on freshwater biodiversity.</p>", "keywords": ["0106 biological sciences", "570", "amplification rate; biomonitoring; biotic indices; cytochrome c oxidase I; environmental DNA; freshwater biodiversity; macroinvertebrates; primer bias; taxonomic resolution; universality", "500", "Fresh Water", "Biodiversity", "15. Life on land", "01 natural sciences", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "Europe", "Animals", "DNA Barcoding", " Taxonomic", "Humans", "France", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/791349/3/ficetola%20et%20al%202020%20Mol%20Ecol%20submitted.pdf"}, {"href": "https://air.unimi.it/bitstream/2434/791349/4/mec.15632.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/mec.15632"}, {"href": "https://doi.org/10.1111/mec.15632"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Molecular%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/mec.15632", "name": "item", "description": "10.1111/mec.15632", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/mec.15632"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-09-28T00:00:00Z"}}, {"id": "10.1371/journal.pone.0102315", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:18:16Z", "type": "Journal Article", "created": "2014-07-16", "title": "Soil Biochemical Responses To Nitrogen Addition In A Bamboo Forest", "description": "Many vital ecosystem processes take place in the soils and are greatly affected by the increasing active nitrogen (N) deposition observed globally. Nitrogen deposition generally affects ecosystem processes through the changes in soil biochemical properties such as soil nutrient availability, microbial properties and enzyme activities. In order to evaluate the soil biochemical responses to elevated atmospheric N deposition in bamboo forest ecosystems, a two-year field N addition experiment in a hybrid bamboo (Bambusa pervariabilis \u00d7 Dendrocalamopsis daii) plantation was conducted. Four levels of N treatment were applied: (1) control (CK, without N added), (2) low-nitrogen (LN, 50 kg N ha(-1) year(-1)), (3) medium-nitrogen (MN, 150 kg N ha(-1) year(-1)), and (4) high-nitrogen (HN, 300 kg N ha(-1) year(-1)). Results indicated that N addition significantly increased the concentrations of NH4(+), NO3(-), microbial biomass carbon, microbial biomass N, the rates of nitrification and denitrification; significantly decreased soil pH and the concentration of available phosphorus, and had no effect on the total organic carbon and total N concentration in the 0-20 cm soil depth. Nitrogen addition significantly stimulated activities of hydrolytic enzyme that acquiring N (urease) and phosphorus (acid phosphatase) and depressed the oxidative enzymes (phenol oxidase, peroxidase and catalase) activities. Results suggest that (1) this bamboo forest ecosystem is moving towards being limited by P or co-limited by P under elevated N deposition, (2) the expected progressive increases in N deposition may have a potential important effect on forest litter decomposition due to the interaction of inorganic N and oxidative enzyme activities, in such bamboo forests under high levels of ambient N deposition.", "keywords": ["Analysis of Variance", "China", "Atmosphere", "Monophenol Monooxygenase", "Nitrogen", "Science", "Q", "Acid Phosphatase", "R", "04 agricultural and veterinary sciences", "Forests", "15. Life on land", "Catalase", "Nitrification", "Soil", "Ammonia", "Denitrification", "Medicine", "Urea", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Sasa", "Soil Microbiology", "Research Article", "Peroxidase"]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0102315"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0102315", "name": "item", "description": "10.1371/journal.pone.0102315", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0102315"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-07-16T00:00:00Z"}}, {"id": "10.3389/fpls.2021.688318", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:19:17Z", "type": "Journal Article", "created": "2021-10-11", "title": "Involvement of Arabidopsis Multi-Copper Oxidase-Encoding LACCASE12 in Root-to-Shoot Iron Partitioning: A Novel Example of Copper-Iron Crosstalk", "description": "<p>Numerous central biological processes depend on the participation of the essential elements iron (Fe) or copper (Cu), including photosynthesis, respiration, cell wall remodeling and oxidative stress protection. Yet, both Fe and Cu metal cations can become toxic when accumulated in excess. Because of the potent ligand-binding and redox chemistries of these metals, there is a need for the tight and combined homeostatic control of their uptake and distribution. Several known examples pinpoint an inter-dependence of Fe and Cu homeostasis in eukaryotes, mostly in green algae, yeast and mammals, but this is less well understood in multicellular plants to date. In Arabidopsis, Cu deficiency causes secondary Fe deficiency, and this is associated with reduced in vitro ferroxidase activity and decreased root-to-shoot Fe translocation. Here we summarize the current knowledge of the cross-talk between Cu and Fe homeostasis and present a partial characterization of LACCASE12 (LAC12) that encodes a member of the multicopper oxidase (MCO) protein family in Arabidopsis. LAC12 transcript levels increase under Fe deficiency. The phenotypic characterization of two mutants carrying T-DNA insertions suggests a role of LAC12 in root-to-shoot Fe partitioning and in maintaining growth on Fe-deficient substrates. A molecular understanding of the complex interactions between Fe and Cu will be important for combating Fe deficiency in crops and for advancing biofortification approaches.</p", "keywords": ["2. Zero hunger", "iron", "multicopper oxidase", "copper", "homeostasis", "Plant culture", "deficiency", "Plant Science", "16. Peace & justice", "SB1-1110"]}, "links": [{"href": "https://doi.org/10.3389/fpls.2021.688318"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fpls.2021.688318", "name": "item", "description": "10.3389/fpls.2021.688318", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fpls.2021.688318"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-11T00:00:00Z"}}, {"id": "10.3390/jox15010002", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:19:25Z", "type": "Journal Article", "created": "2024-12-26", "title": "Impact of Short-Chain Perfluoropropylene Oxide Acids on Biochemical and Behavioural Parameters in Eisenia fetida (Savigny, 1826)", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Per- and polyfluoroalkyl substances (PFAS) are a class of persistent organic pollutants that pose a growing threat to environmental and human health. Soil acts as a long-term reservoir for PFAS, potentially impacting soil biodiversity and ecosystem function. Earthworms, as keystone species in soil ecosystems, are particularly vulnerable to PFAS exposure. In this study, we investigated the sublethal effects of three short-chain (C4\u2013C6) next-generation perfluoropropylene oxide acids (PFPOAs) on the earthworm Eisenia fetida, using a legacy perfluoroalkyl carboxylic acid (PFCA), perfluorooctanoic acid (PFOA), as a reference. We assessed a suite of biochemical endpoints, including markers for oxidative stress (catalase and superoxide dismutase activity), immunity (phenol oxidase activity), neurotoxicity (acetylcholinesterase activity), and behavioural endpoints (escape test). Results indicate that all tested PFAS, even at sub-micromolar concentrations, elicited significant effects across multiple physiological domains. Interestingly, HFPO-DA demonstrated the most substantial impact across all endpoints tested, indicating broad and significant biochemical and neurotoxic effects. Our findings underscore the potential risks of both legacy and emerging PFAS to soil ecosystems, emphasising the need for further research to understand the long-term consequences of PFAS contamination.</p></article>", "keywords": ["poly and perfluoroalkyl substance", "catalase", "acetylcholinesterase", "phenol oxidase", "RM1-950", "superoxide dismutase", "01 natural sciences", "immune response", "Article", "poly and perfluoroalkyl substances", "RA1190-1270", "Toxicology. Poisons", "628", "Therapeutics. Pharmacology", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.mdpi.com/2039-4713/15/1/2/pdf"}, {"href": "https://doi.org/10.3390/jox15010002"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Xenobiotics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/jox15010002", "name": "item", "description": "10.3390/jox15010002", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/jox15010002"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "10.3389/fpls.2021.813380", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:19:18Z", "type": "Journal Article", "created": "2021-12-03", "title": "Corrigendum: Involvement of Arabidopsis Multi-Copper Oxidase-Encoding LACCASE12 in Root-to-Shoot Iron Partitioning: A Novel Example of Copper-Iron Crosstalk", "description": "2 Pags.- 1 Fig.   \u00a9 2021 Bernal and Kr\u00e4mer. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). A Corrigendum on Involvement of Arabidopsis Multi-Copper Oxidase-Encoding LACCASE12 in Root-to-Shoot Iron Partitioning: A Novel Example of Copper-Iron Crosstalk / by Bernal, M., and Kr\u00e4mer, U. (2021). Front. Plant Sci. 12:688318. doi: 10.3389/fpls.2021.688318.       In the original article, there was a mistake in Figure 2B as published. The panel B showed the positive control of panel A and it was accidentally taken from a different experiment when the figure was prepared. The corrected Figure 2 with the correct positive control plate appears below. Peer reviewed", "keywords": ["iron", "multicopper oxidase", "copper", "homeostasis", "Plant culture", "deficiency", "Plant Science", "SB1-1110"]}, "links": [{"href": "https://doi.org/10.3389/fpls.2021.813380"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fpls.2021.813380", "name": "item", "description": "10.3389/fpls.2021.813380", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fpls.2021.813380"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-12-03T00:00:00Z"}}, {"id": "10.5061/dryad.c85gk", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:19:47Z", "type": "Dataset", "title": "Data from: Plant-soil interactions shape the identity and persistence of soil organic carbon in invaded ecosystems: implication for legacy effects", "description": "unspecified1. Introduced, invasive plants can alter local soil chemistry and  microbial communities, but the underlying mechanisms and extent of these  changes are largely unknown. Based on characteristics associated with  invasiveness in plants, it was hypothesized that introduced species that  produce large amounts of litter with distinctive secondary compounds can  a) alter the chemistry of both extractable and bulk carbon in the soil, b)  shift microbial communities towards microbes better able to metabolize the  compounds in the litter, and c) cause soil carbon chemistry and microbial  communities to shift to relatively uniform, novel states at multiple  sites. 2. Composition of phenolics in senescent tissues (leaves and roots)  of Polygonum cuspidatum was compared to the composition of extractable  phenolics and non-extractable bulk organic carbon in soils under and  adjacent to large, long-established stands of P. cuspidatum at four sites  in the eastern U.S. Rates of degradation of phenolics, activities of  enzymes associated with the breakdown of phenolics, and shifts in  microbial community composition were also measured at the sites. 3. Soils  under P. cuspidatum stands contained twice as much phenolics as adjacent  soils, but the composition of phenolics differed greatly between soils  under stands and senescent tissues of P. cuspidatum. Flavonoids and  proanthocyanidins constituted &gt;90% of the identified phenolics in  P. cuspidatum tissues, whereas monophenolic compounds accounted for  &gt; 90% of the phenolics in soils under stands. Soils under and  adjacent to stands also exhibited distinctive compositions of relatively  persistent bulk organic carbon; composition differed less between soils  under stands at different sites than between soils under and adjacent to  stands at the same site. 4. Soils under P. cuspidatum had 2.8 times  greater abundance of fungi than soils adjacent to stands, and fungal  markers showed clear separation of soils under and adjacent to P.  cuspidatum. However, the potential activity of enzymes that degrade  polyphenols was lower in soils under stands. Exogenously applied  chemically complex polyphenols persisted in both P. cuspidatum invaded and  adjacent non-invaded soils, whereas less complex compounds rapidly  disappeared from both soils. 5. Synthesis. Results suggest that  interactions between plant inputs, abiotic reactions, and biotic  transformations may create and maintain new states in invaded soils that  are chemically and biologically less diverse. In the case of polyphenol  rich, fast growing invasive species, these interactions may alter the  composition of bulk soil organic matter that has slower turnover rates,  resulting in legacy effects. Restoration could thus require, not just  removal of the species, but also post-removal interventions such as soil  amendments.", "keywords": ["Flavonoids", "Peroxidases", "Mass spectrometry", "tannins", "Fallopia japonica", "Japanese knotweed", "Reynoutria japonica", "Polyphenols", "home-field advantage", "Legacy effect", "15. Life on land", "soil enzymes"], "contacts": [{"organization": "Suseela, Vidya, Alpert, Peter, Nakatsu, Cindy H., Armstrong, Arthur, Tharayil, Nishanth,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.c85gk"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.c85gk", "name": "item", "description": "10.5061/dryad.c85gk", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.c85gk"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-09-24T00:00:00Z"}}, {"id": "10261/394805", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:22:07Z", "type": "Journal Article", "created": "2025-07-11", "title": "Morphological and molecular characterisation of Neothada olearum sp. nov. (Nematoda: Tylenchidae) from Spain", "description": "Abstract    <p>During nematode surveys conducted to investigate the biodiversity of plant-parasitic nematodes in Mediterranean olive groves with different management strategies (organic and conventional), a nematode population of the genus Neothada was detected in southern Spain. Application of integrative taxonomical approaches clearly demonstrated that it is a new species described herein as Neothada olearum sp. nov., also representing the first report of the genus in Spain. The new species is amphimictic, characterised by a short body (563\uffe2\uff80\uff93774 \uffce\uffbcm); cuticle widely annulated (2.5\uffe2\uff80\uff933.0 \uffce\uffbcm); total number of body annuli 214\uffe2\uff80\uff93226; 16 longitudinal ridges giving a tessellate body surface; stylet without distinct basal knobs (9.0\uffe2\uff80\uff9311.0 \uffce\uffbcm); and tail elongate-conoid, with tip bluntly rounded. The results of molecular analysis of D2-D3 28S rRNA, ITS rRNA, partial 18S rRNA, and cytochrome oxidase c subunit 1 (COI) gene sequences support for the new species status and clearly separated from N. major and other species within Neothada. Phylogenetic analyses of ribosomal and mitochondrial markers of this study suggested that Neothada is a monophyletic genus, clearly separated from Thada.</p", "keywords": ["Cytochrome oxidase c subunit 1", "D2-D3 of 28S rRNA", "Description", "Olive", "ITS rRNA"]}, "links": [{"href": "https://doi.org/10261/394805"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Helminthology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10261/394805", "name": "item", "description": "10261/394805", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10261/394805"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-01-01T00:00:00Z"}}, {"id": "10261/270558", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:22:03Z", "type": "Journal Article", "created": "2021-12-03", "title": "Corrigendum: Involvement of Arabidopsis Multi-Copper Oxidase-Encoding LACCASE12 in Root-to-Shoot Iron Partitioning: A Novel Example of Copper-Iron Crosstalk", "description": "2 Pags.- 1 Fig.   \u00a9 2021 Bernal and Kr\u00e4mer. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). A Corrigendum on Involvement of Arabidopsis Multi-Copper Oxidase-Encoding LACCASE12 in Root-to-Shoot Iron Partitioning: A Novel Example of Copper-Iron Crosstalk / by Bernal, M., and Kr\u00e4mer, U. (2021). Front. Plant Sci. 12:688318. doi: 10.3389/fpls.2021.688318.       In the original article, there was a mistake in Figure 2B as published. The panel B showed the positive control of panel A and it was accidentally taken from a different experiment when the figure was prepared. The corrected Figure 2 with the correct positive control plate appears below. Peer reviewed", "keywords": ["iron", "multicopper oxidase", "copper", "homeostasis", "Plant culture", "deficiency", "Plant Science", "SB1-1110"]}, "links": [{"href": "https://doi.org/10261/270558"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10261/270558", "name": "item", "description": "10261/270558", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10261/270558"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-12-03T00:00:00Z"}}, {"id": "10261/256035", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:22:03Z", "type": "Journal Article", "created": "2021-10-11", "title": "Involvement of Arabidopsis Multi-Copper Oxidase-Encoding LACCASE12 in Root-to-Shoot Iron Partitioning: A Novel Example of Copper-Iron Crosstalk", "description": "<p>Numerous central biological processes depend on the participation of the essential elements iron (Fe) or copper (Cu), including photosynthesis, respiration, cell wall remodeling and oxidative stress protection. Yet, both Fe and Cu metal cations can become toxic when accumulated in excess. Because of the potent ligand-binding and redox chemistries of these metals, there is a need for the tight and combined homeostatic control of their uptake and distribution. Several known examples pinpoint an inter-dependence of Fe and Cu homeostasis in eukaryotes, mostly in green algae, yeast and mammals, but this is less well understood in multicellular plants to date. In Arabidopsis, Cu deficiency causes secondary Fe deficiency, and this is associated with reduced in vitro ferroxidase activity and decreased root-to-shoot Fe translocation. Here we summarize the current knowledge of the cross-talk between Cu and Fe homeostasis and present a partial characterization of LACCASE12 (LAC12) that encodes a member of the multicopper oxidase (MCO) protein family in Arabidopsis. LAC12 transcript levels increase under Fe deficiency. The phenotypic characterization of two mutants carrying T-DNA insertions suggests a role of LAC12 in root-to-shoot Fe partitioning and in maintaining growth on Fe-deficient substrates. A molecular understanding of the complex interactions between Fe and Cu will be important for combating Fe deficiency in crops and for advancing biofortification approaches.</p", "keywords": ["2. Zero hunger", "iron", "multicopper oxidase", "copper", "homeostasis", "Plant culture", "deficiency", "Plant Science", "16. Peace & justice", "SB1-1110"]}, "links": [{"href": "https://doi.org/10261/256035"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10261/256035", "name": "item", "description": "10261/256035", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10261/256035"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-11T00:00:00Z"}}, {"id": "10261/398717", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:22:07Z", "type": "Other", "title": "Morphological and molecular characterisation of Ditylenchoides morocciensis sp. nov. (Nematoda: Anguinoidea) from Morocco", "description": "Open AccessPeer reviewed", "keywords": ["Morphology", "Cytochrome oxidase c subunit 1", "D2-D3 of 28S rRNA", "Description", "Olive", "ITS rRNA"], "contacts": [{"organization": "Salazar-Garc\u00eda, Rosana, Palomares Rius, Juan E., Bajoub, A, Ajal, E. A., Cantalapiedra-Navarrete, C., Criado-Navarro, Inmaculada, Li\u00e9banas, Gracia, Castillo, Pablo, Archidona-Yuste, Antonio,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10261/398717"}, {"rel": "self", "type": "application/geo+json", "title": "10261/398717", "name": "item", "description": "10261/398717", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10261/398717"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-01-01T00:00:00Z"}}, {"id": "16698151", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:22:24Z", "type": "Journal Article", "created": "2006-05-19", "title": "Intestinal anti-inflammatory activity of combined quercitrin and dietary olive oil supplemented with fish oil, rich in EPA and DHA (n-3) polyunsaturated fatty acids, in rats with DSS-induced colitis", "description": "Previous studies have described the intestinal anti-inflammatory effects exerted by the bioflavonoid quercitrin (QR) and by an n-3 polyunsaturated fatty acids (PUFA)-enriched diet in experimental models of rat colitis. The aim of the present study was to test if the combination of both treatments would result in an improvement in the intestinal anti-inflammatory effect achieved separately.Colitis was induced in female Wistar rats by incorporating dextran sodium sulfate (DSS) in drinking water at 5% (w/v) for 5 days and at 2% (w/v) for the following 10 days. Five groups of rats (n=10) were used: two of them received an olive-oil-based diet with fish oil, rich in n-3 PUFA (FO diet) for 2 weeks before colitis induction and until the end of the experiment, and one of those also was administered daily QR (1mg/kg, PO), starting when DSS concentration was changed. DSS colitis was induced in other two groups fed with standard rat diet, one of them being administered QR as before. A non-colitic group fed standard diet was also included. After that period, the rats were sacrificed and colonic damage was assessed both histologically and biochemically.The concurrent administration of FO diet and QR exhibited an intestinal anti-inflammatory effect, as evidenced by a significant improvement of all biochemical parameters of colonic inflammation assayed in comparison with non-treated colitic rats. Thus, both colonic myeloperoxidase (MPO) and alkaline phosphatase (AP) activities were significantly reduced compared with untreated colitic rats. In addition, a complete restoration of colonic glutathione content, which was depleted as a consequence of the colonic insult, was obtained in rats treated with QR plus FO diet; this content was even higher than that obtained when colitic rats were treated with FO diet alone. When compared with the control colitic group, the combined treatment was also associated with a lower colonic nitric oxide synthase and cyclooxygenase-2 expression as well as with a significant reduction in different colonic proinflammatory mediators assayed, i.e. leukotriene B(4), tumor necrosis factor alpha and interleukin 1beta, showing a significantly greater inhibitory effect of the latter in comparison with rats receiving FO diet without the flavonoid.These results support the potential synergism between the administration of the flavonoid and the incorporation of olive oil and n-3 PUFA to the diet for the treatment of these intestinal inflammatory disorders.", "keywords": ["0301 basic medicine", "0303 health sciences", "Docosahexaenoic Acids", "Colon", "Dextran Sulfate", "Anti-Inflammatory Agents", "Alkaline Phosphatase", "Colitis", "Diet", "Rats", "3. Good health", "Kinetics", "03 medical and health sciences", "Fish Oils", "Eicosapentaenoic Acid", "Dietary Supplements", "Fatty Acids", " Omega-3", "Animals", "Plant Oils", "Female", "Quercetin", "Rats", " Wistar", "Olive Oil", "Peroxidase"]}, "links": [{"href": "https://doi.org/16698151"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Clinical%20Nutrition", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "16698151", "name": "item", "description": "16698151", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/16698151"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-06-01T00:00:00Z"}}, {"id": "3207696996", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:23:14Z", "type": "Journal Article", "created": "2021-10-11", "title": "Involvement of Arabidopsis Multi-Copper Oxidase-Encoding LACCASE12 in Root-to-Shoot Iron Partitioning: A Novel Example of Copper-Iron Crosstalk", "description": "<p>Numerous central biological processes depend on the participation of the essential elements iron (Fe) or copper (Cu), including photosynthesis, respiration, cell wall remodeling and oxidative stress protection. Yet, both Fe and Cu metal cations can become toxic when accumulated in excess. Because of the potent ligand-binding and redox chemistries of these metals, there is a need for the tight and combined homeostatic control of their uptake and distribution. Several known examples pinpoint an inter-dependence of Fe and Cu homeostasis in eukaryotes, mostly in green algae, yeast and mammals, but this is less well understood in multicellular plants to date. In Arabidopsis, Cu deficiency causes secondary Fe deficiency, and this is associated with reduced in vitro ferroxidase activity and decreased root-to-shoot Fe translocation. Here we summarize the current knowledge of the cross-talk between Cu and Fe homeostasis and present a partial characterization of LACCASE12 (LAC12) that encodes a member of the multicopper oxidase (MCO) protein family in Arabidopsis. LAC12 transcript levels increase under Fe deficiency. The phenotypic characterization of two mutants carrying T-DNA insertions suggests a role of LAC12 in root-to-shoot Fe partitioning and in maintaining growth on Fe-deficient substrates. A molecular understanding of the complex interactions between Fe and Cu will be important for combating Fe deficiency in crops and for advancing biofortification approaches.</p", "keywords": ["2. Zero hunger", "iron", "multicopper oxidase", "copper", "homeostasis", "Plant culture", "deficiency", "Plant Science", "16. Peace & justice", "SB1-1110"]}, "links": [{"href": "https://doi.org/3207696996"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3207696996", "name": "item", "description": "3207696996", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3207696996"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-11T00:00:00Z"}}, {"id": "2592633727", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:22:50Z", "type": "Journal Article", "created": "2017-03-09", "title": "Drought stress obliterates the preference for ammonium as an N source in the C 4 plant Spartina alterniflora", "description": "The C4 grass Spartina alterniflora is known for its unique salt tolerance and strong preference for ammonium (NH4+) as a nitrogen (N) source. We here examined whether Spartina's unique preference for NH4+ results in improved performance under drought stress. Manipulative greenhouse experiments were carried out to measure the effects of variable water availability and inorganic N sources on plant performance (growth, photosynthesis, antioxidant, and N metabolism). Drought strongly reduced leaf number and area, plant fresh and dry weight, and photosynthetic activity on all N sources, but the reduction was most pronounced on NH4+. Indeed, the growth advantage seen on NH4+ in the absence of drought, producing nearly double the biomass compared to growth on NO3-, was entirely obliterated under both intermediate and severe drought conditions (50 and 25% field capacity, respectively). Both fresh and dry weight became indistinguishable among N sources under drought. Major markers of the antioxidant capacity of the plant, the activities of the enzymes superoxide dismutase, catalase, ascorbate peroxidase, and glutathione reductase, showed higher constitutive levels on NH4+. Catalase and glutathione reductase were specifically upregulated in NH4+-fed plants with increasing drought stress. This upregulation, however, failed to protect the plants from drought stress. Nitrogen metabolism was characterized by lower constitutive levels of glutamine synthetase in NH4+-fed plants, and a rise in glutamate dehydrogenase (GDH) activity under drought, accompanied by elevated proline levels in leaves. Our results support postulates on the important role of GDH induction, and its involvement in the synthesis of compatible solutes, under abiotic stress. We show that, despite this metabolic shift, S. alterniflora's sensitivity to drought does not benefit from growth on NH4+ and that the imposition of drought stress equalizes all N-source-related growth differences observed under non-drought conditions.", "keywords": ["2. Zero hunger", "0106 biological sciences", "Nitrogen", "Superoxide Dismutase", "15. Life on land", "Catalase", "Poaceae", "01 natural sciences", "Antioxidants", "6. Clean water", "Droughts", "Plant Leaves", "Ascorbate Peroxidases", "Glutamate Dehydrogenase", "Gene Expression Regulation", " Plant", "Ammonium Compounds", "Photosynthesis"]}, "links": [{"href": "https://doi.org/2592633727"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Plant%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2592633727", "name": "item", "description": "2592633727", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2592633727"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-06-01T00:00:00Z"}}, {"id": "28342331", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:22:54Z", "type": "Journal Article", "created": "2017-03-09", "title": "Drought stress obliterates the preference for ammonium as an N source in the C4 plant Spartina alterniflora", "description": "The C4 grass Spartina alterniflora is known for its unique salt tolerance and strong preference for ammonium (NH4+) as a nitrogen (N) source. We here examined whether Spartina's unique preference for NH4+ results in improved performance under drought stress. Manipulative greenhouse experiments were carried out to measure the effects of variable water availability and inorganic N sources on plant performance (growth, photosynthesis, antioxidant, and N metabolism). Drought strongly reduced leaf number and area, plant fresh and dry weight, and photosynthetic activity on all N sources, but the reduction was most pronounced on NH4+. Indeed, the growth advantage seen on NH4+ in the absence of drought, producing nearly double the biomass compared to growth on NO3-, was entirely obliterated under both intermediate and severe drought conditions (50 and 25% field capacity, respectively). Both fresh and dry weight became indistinguishable among N sources under drought. Major markers of the antioxidant capacity of the plant, the activities of the enzymes superoxide dismutase, catalase, ascorbate peroxidase, and glutathione reductase, showed higher constitutive levels on NH4+. Catalase and glutathione reductase were specifically upregulated in NH4+-fed plants with increasing drought stress. This upregulation, however, failed to protect the plants from drought stress. Nitrogen metabolism was characterized by lower constitutive levels of glutamine synthetase in NH4+-fed plants, and a rise in glutamate dehydrogenase (GDH) activity under drought, accompanied by elevated proline levels in leaves. Our results support postulates on the important role of GDH induction, and its involvement in the synthesis of compatible solutes, under abiotic stress. We show that, despite this metabolic shift, S. alterniflora's sensitivity to drought does not benefit from growth on NH4+ and that the imposition of drought stress equalizes all N-source-related growth differences observed under non-drought conditions.", "keywords": ["0106 biological sciences", "2. Zero hunger", "Nitrogen", "Superoxide Dismutase", "15. Life on land", "Catalase", "Poaceae", "01 natural sciences", "Antioxidants", "6. Clean water", "Droughts", "Plant Leaves", "Ascorbate Peroxidases", "Glutamate Dehydrogenase", "Gene Expression Regulation", " Plant", "Ammonium Compounds", "Photosynthesis"]}, "links": [{"href": "https://doi.org/28342331"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Plant%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "28342331", "name": "item", "description": "28342331", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/28342331"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-06-01T00:00:00Z"}}, {"id": "39847881", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:23:25Z", "type": "Journal Article", "created": "2024-09-10", "title": "Strategies of Physiological, Morpho-Anatomical and Biochemical Adaptation in Seedlings of Native Species Exposed to Mining Waste", "description": "Seeds of four native species of trees and shrubs (Larrea cuneifolia, Bulnesia retama, Plectrocarpa tetracantha and Prosopis flexuosa) were exposed to soil contaminated with As, Cu, Cd, and Zn from an abandoned gold mine to identify adaptation strategies. Several physiological, morpho-anatomical, and biochemical parameters were determined. The seed germination of L. cuneifolia, B. retama, and P. tetracantha was fully inhibited in 100\u202f% contaminated soil. Toxicological endpoints as NOEC, LOEC and IC50 ranged from 10\u202f% to 25\u202f% of soil contaminated with mining waste. Radicle elongation was the most sensitive variable to high metal(loid) concentrations, except for L. cuneifolia that hypocotyl elongation was the most affected parameter. P. flexuosa was selected to evaluate biochemical biomarkers and morpho-anatomical parameters. It showed an increase in radicle diameter and central radicle cylinder. A concentration-dependent increase in the O2\u00b7- production was observed in radicle and cotyledon. A peak of the enzymatic activity of guaiacol peroxidase, ascorbate peroxidase and catalase enzymes in P. flexuosa seedlings showed a negative relationship between metal(loid) concentration and exposure time. After a drop in the enzymatic activity, an increase in the malondialdehyde content (lipid peroxidation) was observed. The tested native species could be useful for phytoremediation of soils with a very high degree of metal contamination. A further investigation should focus on strategies to improve soil physicochemical characteristics for plant survival at highest contamination levels.", "keywords": ["Metal", "Soil pollution", "Germination", "Catalase", "Adaptation", " Physiological", "Environmental pollution", "Mining", "Phytoremediation", "Environmental sciences", "Soil", "Prosopis", "Ascorbate Peroxidases", "TD172-193.5", "Oxidative stress", "Seedlings", "Phytotoxicity", "Metals", " Heavy", "Seeds", "Arid environment", "Soil Pollutants", "GE1-350", "Peroxidase"]}, "links": [{"href": "https://doi.org/39847881"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecotoxicology%20and%20Environmental%20Safety", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "39847881", "name": "item", "description": "39847881", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/39847881"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "PMC8544784", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-21T16:24:43Z", "type": "Journal Article", "created": "2021-10-11", "title": "Involvement of Arabidopsis Multi-Copper Oxidase-Encoding LACCASE12 in Root-to-Shoot Iron Partitioning: A Novel Example of Copper-Iron Crosstalk", "description": "<p>Numerous central biological processes depend on the participation of the essential elements iron (Fe) or copper (Cu), including photosynthesis, respiration, cell wall remodeling and oxidative stress protection. Yet, both Fe and Cu metal cations can become toxic when accumulated in excess. Because of the potent ligand-binding and redox chemistries of these metals, there is a need for the tight and combined homeostatic control of their uptake and distribution. Several known examples pinpoint an inter-dependence of Fe and Cu homeostasis in eukaryotes, mostly in green algae, yeast and mammals, but this is less well understood in multicellular plants to date. In Arabidopsis, Cu deficiency causes secondary Fe deficiency, and this is associated with reduced in vitro ferroxidase activity and decreased root-to-shoot Fe translocation. Here we summarize the current knowledge of the cross-talk between Cu and Fe homeostasis and present a partial characterization of LACCASE12 (LAC12) that encodes a member of the multicopper oxidase (MCO) protein family in Arabidopsis. LAC12 transcript levels increase under Fe deficiency. The phenotypic characterization of two mutants carrying T-DNA insertions suggests a role of LAC12 in root-to-shoot Fe partitioning and in maintaining growth on Fe-deficient substrates. A molecular understanding of the complex interactions between Fe and Cu will be important for combating Fe deficiency in crops and for advancing biofortification approaches.</p", "keywords": ["2. Zero hunger", "iron", "multicopper oxidase", "copper", "homeostasis", "Plant culture", "deficiency", "Plant Science", "16. Peace & justice", "SB1-1110"]}, "links": [{"href": "https://doi.org/PMC8544784"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC8544784", "name": "item", "description": "PMC8544784", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC8544784"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-11T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Oxidase&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Oxidase&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Oxidase&", "hreflang": "en-US"}, {"rel": "last", "type": "application/geo+json", "title": "items (last)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Oxidase&offset=26", "hreflang": "en-US"}], "numberMatched": 26, "numberReturned": 26, "distributedFeatures": [], "timeStamp": "2026-09-21T18:42:15.183586Z"}