The rate and pathway of ferrihydrite transformation in soil depends on the properties of the soil pore water and diffusion processes.
The present review covers developments in studies of nanomaterials (NMs) in the environment since our much cited review in 2008. We discuss novel insights into fate and behavior, metrology, transformations, bioavailability, toxicity mechanisms, and environmental impacts, with a focus on terrestrial and aquatic systems. Overall, the findings were that: 1) despite substantial developments, critical gaps remain, in large part due to the lack of analytical, modeling, and field capabilities, and also due to the breadth and complexity of the area; 2) a key knowledge gap is the lack of data on environmental concentrations and dosimetry generally; 3) substantial evidence shows that there are nanospecific effects (different from the effects of both ions and larger particles) on the environment in terms of fate, bioavailability, and toxicity, but this is not consistent for all NMs, species, and relevant processes; 4) a paradigm is emerging that NMs are less toxic than equivalent dissolved materials but more toxic than the corresponding bulk materials; and 5) translation of incompletely understood science into regulation and policy continues to be challenging. There is a developing consensus that NMs may pose a relatively low environmental risk, but because of uncertainty and lack of data in many areas, definitive conclusions cannot be drawn. In addition, this emerging consensus will likely change rapidly with qualitative changes in the technology and increased future discharges. Environ Toxicol Chem 2018;37:2029\uffe2\uff80\uff932063. \uffc2\uffa9 2018 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals, Inc. on behalf of SETAC.
", "keywords": ["aquatic and soil organisms", "hazard/risk assessment", "Nanoecotoxicity", "Biological Availability", "Environmental Exposure", "Nanometrology", "Aquatic and soil organisms; Nanometrology; Hazard/risk assessment; Nanoecotoxicity; Nanomaterials", "Ecotoxicology", "nanometrology", "01 natural sciences", "Nanostructures", "nanoecotoxicity", "13. Climate action", "Aquatic and soil organisms", "Oxidation-Reduction", "Hazard/risk assessment", "Ecosystem", "Nanomaterials", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://setac.onlinelibrary.wiley.com/doi/pdf/10.1002/etc.4147"}, {"href": "https://doi.org/10.1002/etc.4147"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Toxicology%20and%20Chemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/etc.4147", "name": "item", "description": "10.1002/etc.4147", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/etc.4147"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-04-06T00:00:00Z"}}, {"id": "10.1016/j.scitotenv.2020.140835", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:20Z", "type": "Journal Article", "created": "2020-07-12", "title": "A chemical, microbiological and (eco)toxicological scheme to understand the efficiency of UV-C/H2O2 oxidation on antibiotic-related microcontaminants in treated urban wastewater", "description": "An assessment comprising chemical, microbiological and (eco)toxicological parameters of antibiotic-related microcontaminants, during the application of UV-C/H2O2 oxidation in secondary-treated urban wastewater, is presented. The process was investigated at bench scale under different oxidant doses (0-50\u00a0mg\u00a0L-1) with regard to its capacity to degrade a mixture of antibiotics (i.e. ampicillin, clarithromycin, erythromycin, ofloxacin, sulfamethoxazole, tetracycline and trimethoprim) with an initial individual concentration of 100\u00a0\u03bcg\u00a0L-1. The process was optimized with respect to the oxidant dose. Under the optimum conditions, the inactivation of selected bacteria and antibiotic resistant bacteria (ARB) (i.e. faecal coliforms, Enterococcus spp., Pseudomonasaeruginosa and total heterotrophs), and the reduction of the abundance of selected antibiotic resistance genes (ARGs) (e.g. blaOXA, qnrS, sul1, tetM) were investigated. Also, phytotoxicity against three plant species, ecotoxicity against Daphnia magna, genotoxicity, oxidative stress and cytotoxicity were assessed. Apart from chemical actinometry, computational fluid dynamics (CFD) modelling was applied to estimate the fluence rate. For the given wastewater quality and photoreactor type used, 40\u00a0mg\u00a0L-1 H2O2 were required for the complete degradation of the studied antibiotics after 18.9\u00a0J\u00a0cm-2. Total bacteria and ARB inactivation was observed at UV doses <1.5\u00a0J\u00a0cm-2 with no bacterial regrowth being observed after 24\u00a0h. The abundance of most ARGs was reduced at 16\u00a0J\u00a0cm-2. The process produced a final effluent with lower phytotoxicity compared to the untreated wastewater. The toxicity against Daphnia magna was shown to increase during the chemical oxidation. Although genotoxicity and oxidative stress fluctuated during the treatment, the latter led to the removal of these effects. Overall, it was made apparent from the high UV fluence required, that the particular reactor although extensively used in similar studies, it does not utilize efficiently the incident radiation and thus, seems not to be suitable for this kind of studies.", "keywords": ["Life sciences; biology", "info:eu-repo/classification/ddc/570", "570", "biology", "0211 other engineering and technologies", "Hydrogen Peroxide", "02 engineering and technology", "Wastewater", "Life sciences", "01 natural sciences", "6. Clean water", "Anti-Bacterial Agents", "13. Climate action", "616", "11. Sustainability", "Animals", "ddc:570", "Oxidation-Reduction", "Water Pollutants", " Chemical", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.scitotenv.2020.140835"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.scitotenv.2020.140835", "name": "item", "description": "10.1016/j.scitotenv.2020.140835", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.scitotenv.2020.140835"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-01T00:00:00Z"}}, {"id": "10.1007/s00128-020-02835-8", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-05-30T16:14:49Z", "type": "Journal Article", "created": "2020-03-28", "title": "Fate of 2,4,6-tribromophenol in soil under different redox conditions.", "description": "Fate of 2,4,6-tribromophenol (TBP) in environmental matrices is obscure. We used 14C-tracer to investigated mineralization, transformation, and non-extractable residue (NER)-formation of TBP in a soil under continuously oxic, continuously anoxic, and anoxic-oxic alteration conditions. In all cases, TBP rapidly dissipated, mineralized to CO2, and formed NERs in the soil. Considerable amounts of transformation products (2-12%) were detected during the incubation. Marked mineralization (13-26%) indicated that soil microorganisms used TBP as their energy source. About 62-70% of the initial radioactivity was transformed into NERs, being mainly attributed to binding to humic and fulvic acid fractions. TBP transformation was significantly faster under oxic conditions than under anoxic conditions, and was boosted when the soil redox changed from anoxic to oxic state. The results provide new insights into fate of TBP in soil and suggest the importance to evaluate the stability of NERs for risk assessment of TBP in soil.", "keywords": ["Minerals", "Soil", "Phenols", "0211 other engineering and technologies", "Soil Pollutants", "Benzopyrans", "02 engineering and technology", "Oxidation-Reduction", "01 natural sciences", "Humic Substances", "6. Clean water", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s00128-020-02835-8.pdf"}, {"href": "https://doi.org/10.1007/s00128-020-02835-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bulletin%20of%20Environmental%20Contamination%20and%20Toxicology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00128-020-02835-8", "name": "item", "description": "10.1007/s00128-020-02835-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00128-020-02835-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-03-28T00:00:00Z"}}, {"id": "10.1007/s00253-011-3535-5", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-05-30T16:14:50Z", "type": "Journal Article", "created": "2011-08-17", "title": "Methanotrophic Community Structure And Activity Under Warming And Grazing Of Alpine Meadow On The Tibetan Plateau", "description": "Knowledge about methanotrophs and their activities is important to understand the microbial mediation of the greenhouse gas CH(4) under climate change and human activities in terrestrial ecosystems. The effects of simulated warming and sheep grazing on methanotrophic abundance, community composition, and activity were studied in an alpine meadow soil on the Tibetan Plateau. There was high abundance of methanotrophs (1.2-3.4\u2009\u00d7\u200910(8) pmoA gene copies per gram of dry weight soil) assessed by real-time PCR, and warming significantly increased the abundance regardless of grazing. A total of 64 methanotrophic operational taxonomic units (OTUs) were obtained from 1,439 clone sequences, of these OTUs; 63 OTUs (98.4%) belonged to type I methanotrophs, and only one OTU was Methylocystis of type II methanotrophs. The methanotroph community composition and diversity were not apparently affected by the treatments. Warming and grazing significantly enhanced the potential CH(4) oxidation activity. There were significantly negative correlations between methanotrophic abundance and soil moisture and between methanotrophic abundance and NH(4)-N content. The study suggests that type I methanotrophs, as the dominance, may play a key role in CH(4) oxidation, and the alpine meadow has great potential to consume more CH(4) under future warmer and grazing conditions on the Tibetan Plateau.", "keywords": ["DNA", " Bacterial", "0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Sheep", "Bacteria", "Molecular Sequence Data", "Temperature", "Sequence Analysis", " DNA", "15. Life on land", "Real-Time Polymerase Chain Reaction", "Tibet", "Biota", "Soil", "03 medical and health sciences", "Ammonia", "13. Climate action", "Animals", "Methane", "Oxidation-Reduction", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1007/s00253-011-3535-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Microbiology%20and%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00253-011-3535-5", "name": "item", "description": "10.1007/s00253-011-3535-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00253-011-3535-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-08-17T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2019.02.158", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-05-30T16:16:22Z", "type": "Journal Article", "created": "2019-02-25", "title": "Bioreduction of selenate in an anaerobic biotrickling filter using methanol as electron donor", "description": "The anaerobic bioreduction of selenate, fed in step (up to 60\u202fmg.L-1) or continuous (\u223c7\u202fmg.L-1) trickling mode, in the presence of gas-phase methanol (4.3-50\u202fg\u202fm-3.h-1) was evaluated in a biotrickling filter (BTF). During the 48\u202fd of step-feed and 41\u202fd of continuous-feed operations, average selenate removal efficiencies (RE)\u202f>\u202f90% and \u223c68% was achieved, corresponding to a selenate reduction rate of, respectively, 7.3 and 4.5\u202fmg.L-1.d-1. During the entire period of BTF operation, 65.6% of the total Se fed as SeO42- was recovered. Concerning gas-phase methanol, the maximum elimination capacity (ECmax) was 46.4\u202fg\u202fm-3.h-1, with a RE\u202f>\u202f80%. Methanol was mainly utilized for acetogenesis and converted to volatile fatty acids (VFA) in the liquid-phase. Up to 5000\u202fmg.L-1 of methanol and 800\u202fmg.L-1 of acetate accumulated in the trickling liquid of the BTF.", "keywords": ["Bacteria", "Sewage", "Methanol", "0211 other engineering and technologies", "02 engineering and technology", "Selenic Acid", "Fatty Acids", " Volatile", "Archaea", "01 natural sciences", "6. Clean water", "Biodegradation", " Environmental", "Bioreactors", "Oxidation-Reduction", "Filtration", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2019.02.158"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2019.02.158", "name": "item", "description": "10.1016/j.chemosphere.2019.02.158", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2019.02.158"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-06-01T00:00:00Z"}}, {"id": "10.1016/j.biortech.2018.12.056", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:16:16Z", "type": "Journal Article", "created": "2018-12-17", "title": "Assessing arsenic redox state evolution in solution and solid phase during As(III) sorption onto chemically-treated sewage sludge digestate biochars", "description": "This work aimed to determine the arsenic redox state distribution during As(III) sorption onto chemically-modified biochars. A solid-liquid extraction protocol using phosphoric (0.3\u202fM) and ascorbic (0.5\u202fM) acids at 80\u202f\u00b0C for 20\u202fmin was established to ensure a quantitative recovery and stability of As(III) during the extraction. During sorption experiments, the redox conversions of As occurred and As(III) was either stable or partially oxidized in solution. The As distribution strongly varied depending on the biochar chemical treatment performed as well as the selected washing procedures (batch versus column washings). As(III) oxidation was favored with the KOH-modified biochar washed in batch mode. This oxidation was mostly induced by the biochar solid compounds rather than by soluble compounds released in solution. The As redox state distribution of As sorbed onto the biochars was successfully assessed using the extraction procedure. Arsenic was predominantly sorbed as As(III) (76-92%) onto the biochars.", "keywords": ["550", "Sewage", "[SPI.GPROC] Engineering Sciences [physics]/Chemical and Process Engineering", "Charcoal", "[SPI.GPROC]Engineering Sciences [physics]/Chemical and Process Engineering", "Adsorption", "540", "Oxidation-Reduction", "01 natural sciences", "6. Clean water", "Arsenic", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.biortech.2018.12.056"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioresource%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biortech.2018.12.056", "name": "item", "description": "10.1016/j.biortech.2018.12.056", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biortech.2018.12.056"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-03-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2006.03.003", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-05-30T16:16:35Z", "type": "Journal Article", "created": "2006-05-09", "title": "Effect Of Submergence-Emergence Sequence And Organic Matter Or Aluminosilicate Amendment On Metal Uptake By Woody Wetland Plant Species From Contaminated Sediments", "description": "Site-specific hydrological conditions affect the availability of trace metals for vegetation. In a greenhouse experiment, the effect of submersion on the metal uptake by the wetland plant species Salix cinerea and Populus nigra grown on a contaminated dredged sediment-derived soil and on an uncontaminated soil was evaluated. An upland hydrological regime for the polluted sediment caused elevated Cd concentrations in leaves and cuttings for both species. Emergence and soil oxidation after initial submersion of a polluted sediment resulted in comparable foliar Cd and Zn concentrations for S. cinerea as for the constant upland treatment. The foliar Cd and Zn concentrations were clearly higher than for submerged soils after initial upland conditions. These results point at the importance of submergence-emergence sequence for plant metal availability. The addition of foliar-based organic matter or aluminosilicates to the polluted sediment-derived soil in upland conditions did not decrease Cd and Zn uptake by S. cinerea.", "keywords": ["Geologic Sediments", "Biological Availability", "Water", "Salix", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "6. Clean water", "Plant Leaves", "Zinc", "Populus", "13. Climate action", "Metals", " Heavy", "Immersion", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Aluminum Silicates", "Seasons", "Oxidation-Reduction", "Ecosystem", "Plant Shoots", "Cadmium", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2006.03.003"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2006.03.003", "name": "item", "description": "10.1016/j.envpol.2006.03.003", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2006.03.003"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-01-01T00:00:00Z"}}, {"id": "10.1016/j.jhazmat.2009.05.074", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:17:06Z", "type": "Journal Article", "created": "2009-05-23", "title": "Enrichment Of Marsh Soils With Heavy Metals By Effect Of Anthropic Pollution", "description": "The impact of waste disposal on marsh soils was assessed in topsoil samples collected at eight randomly selected points in the salt marsh in Ramallosa (Pontevedra, Spain) at 4-month intervals for 2 years. Polluted soil samples were characterized in physico-chemical terms and their heavy metal contents determined by comparison with control, unpolluted samples. The results revealed a marked effect of waste discharges on the soils in the area, which have low contents in heavy metals under normal environmental conditions. In fact, the studied soils were found to contain substantial amounts of total and DTPA-extractable Cd, Cu, Pb and Zn. Based on the relationship of the redox potential with the DTPA-extractable Cd, Cu, Pb, and Zn contents of the soils, strongly reductive conditions raised the total contents in these elements by effect of their remaining in the soils as precipitated sulphides. Such contents, however, decreased as oxidative conditions gradually prevailed. The contents in DTPA-extractable metals increased with increasing Eh through the release of the metals in ionic form to the soil solution under oxidative conditions. The contents in heavy metals concentrating in the polluted soils were several times higher than those in the control soils (viz. 2 vs. 6 for Cd, 4 vs. 6 for Cu, 4 vs. 20 for Pb, and 2 vs. 15 for Zn, all in mgkg(-1)). This can be expected to influence the amounts of available heavy metals present in the soils, and hence the environmental quality of the area, in the near future. Based on its geoaccumulation index (Class >/=3 for Cd and Cu, and 1-4 for Pb and Zn), the Ramallosa marsh is highly polluted with Cd and moderately to highly polluted with Cu, Pb and Zn. The enrichment factors obtained confirm that the salt marsh is highly polluted (especially with Cd) as the primary result of anthropic activity.", "keywords": ["Industrial Waste", "Reproducibility of Results", "Agriculture", "Pentetic Acid", "15. Life on land", "Waste Disposal", " Fluid", "01 natural sciences", "6. Clean water", "Ion Exchange", "13. Climate action", "Metals", " Heavy", "Wetlands", "Linear Models", "Potentiometry", "Water Pollution", " Chemical", "Soil Pollutants", "Oxidation-Reduction", "Algorithms", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.jhazmat.2009.05.074"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Hazardous%20Materials", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jhazmat.2009.05.074", "name": "item", "description": "10.1016/j.jhazmat.2009.05.074", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jhazmat.2009.05.074"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-10-01T00:00:00Z"}}, {"id": "10.1016/j.scitotenv.2013.10.011", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:17Z", "type": "Journal Article", "created": "2013-10-26", "title": "Shifts In The Abundance And Community Structure Of Soil Ammonia Oxidizers In A Wet Sclerophyll Forest Under Long-Term Prescribed Burning", "description": "Fire shapes global biome distribution and promotes the terrestrial biogeochemical cycles. Ammonia-oxidizing bacteria (AOB) and archaea (AOA) play a vital role in the biogeochemical cycling of nitrogen (N). However, behaviors of AOB and AOA under long-term prescribed burning remain unclear. This study was to examine how fire affected the abundances and communities of soil AOB and AOA. A long-term repeated forest fire experiment with three burning treatments (never burnt, B0; biennially burnt, B2; and quadrennially burnt, B4) was used in this study. The abundances and community structure of soil AOB and AOA were determined using quantitative PCR, restriction fragment length polymorphism and clone library. More frequent fires (B2) increased the abundance of bacterium amoA gene, but tended to decrease archaeal amoA genes. Fire also modified the composition of AOA and AOB communities. Canonical correspondence analysis showed soil pH and dissolved organic C (DOC) strongly affected AOB genotypes, while nitrate-N and DOC shaped the AOA distribution. The increased abundance of bacterium amoA gene by fires may imply an important role of AOB in nitrification in fire-affected soils. The fire-induced shift in the community composition of AOB and AOA demonstrates that fire can disturb nutrient cycles.", "keywords": ["0301 basic medicine", "570", "0303 health sciences", "Bacteria", "Nitrogen", "Forestry", "Biodiversity", "15. Life on land", "Archaea", "Nitrification", "Fires", "Trees", "Soil", "03 medical and health sciences", "Biodegradation", " Environmental", "Soil biology", "Ammonia", "13. Climate action", "Oxidation-Reduction", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1016/j.scitotenv.2013.10.011"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.scitotenv.2013.10.011", "name": "item", "description": "10.1016/j.scitotenv.2013.10.011", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.scitotenv.2013.10.011"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-02-01T00:00:00Z"}}, {"id": "10.1016/j.scitotenv.2021.151567", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:21Z", "type": "Journal Article", "created": "2021-11-08", "title": "Mineral characterization and composition of Fe-rich flocs from wetlands of Iceland: Implications for Fe, C and trace element export", "description": "Open AccessIn freshwater wetlands, redox interfaces characterized by circumneutral pH, steep gradients in O2, and a continual supply of Fe(II) form ecological niches favorable to microaerophilic iron(II) oxidizing bacteria (FeOB) and the formation of flocs; associations of (a)biotic mineral phases, microorganisms, and (microbially-derived) organic matter. On the volcanic island of Iceland, wetlands are replenished with Fe-rich surface-, ground- and springwater. Combined with extensive drainage of lowland wetlands, which forms artificial redox gradients, accumulations of bright orange (a)biotically-derived Fe-rich flocs are common features of Icelandic wetlands. These loosely consolidated flocs are easily mobilized, and, considering the proximity of Iceland's lowland wetlands to the coast, are likely to contribute to the suspended sediment load transported to coastal waters. To date, however, little is known regarding (Fe) mineral and elemental composition of the flocs. In this study, flocs from wetlands (n = 16) across Iceland were analyzed using X-ray diffraction and spectroscopic techniques (X-ray absorption and 57Fe M\u00f6ssbauer) combined with chemical extractions and (electron) microscopy to comprehensively characterize floc mineral, elemental, and structural composition. All flocs were rich in Fe (229\u2013414 mg/g), and floc Fe minerals comprised primarily ferrihydrite and nano-crystalline lepidocrocite, with a single floc sample containing nano-crystalline goethite. Floc mineralogy also included Fe in clay minerals and appreciable poorly-crystalline aluminosilicates, most likely allophane and/or imogolite. Microscopy images revealed that floc (bio)organics largely comprised mineral encrusted microbially-derived components (i.e. sheaths, stalks, and EPS) indicative of common FeOB Leptothrix spp. and Gallionella spp. Trace element contents in the flocs were in the low \u03bcg/g range, however nearly all trace elements were extracted with hydroxylamine hydrochloride. This finding suggests that the (a)biotic reductive dissolution of floc Fe minerals, plausibly driven by exposure to the varied geochemical conditions of coastal waters following floc mobilization, could lead to the release of associated trace elements. Thus, the flocs should be considered vectors for transport of Fe, organic carbon, and trace elements from Icelandic wetlands to coastal waters.", "keywords": ["Minerals", "Iron", "Iceland", "Freshwater flocs", "04 agricultural and veterinary sciences", "15. Life on land", "Ferric Compounds", "01 natural sciences", "6. Clean water", "Trace Elements", "EXAFS", "13. Climate action", "Freshwater flocs; Fe(II)-oxidizing bacteria; Biominerals; Wetlands; EXAFS; 57Fe M\u00f6ssbauer", "Wetlands", "57Fe M\u00f6ssbauer", "Biominerals", "Fe(II)-oxidizing bacteria", "0401 agriculture", " forestry", " and fisheries", "14. Life underwater", "Oxidation-Reduction", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.scitotenv.2021.151567"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.scitotenv.2021.151567", "name": "item", "description": "10.1016/j.scitotenv.2021.151567", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.scitotenv.2021.151567"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-01T00:00:00Z"}}, {"id": "10.1016/j.scitotenv.2024.177210", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:23Z", "type": "Journal Article", "created": "2024-11-02", "title": "Uranium (VI) reduction by an iron-reducing Desulfitobacterium species as single cells and in artificial multispecies bio-aggregates", "description": "Microbial U(VI) reduction plays a major role in new bioremediation strategies for radionuclide-contaminated environments and can potentially affect the safe disposal of high-level radioactive waste in a deep geological repository. Desulfitobacterium sp. G1-2, isolated from a bentonite sample, was used to investigate its potential to reduce U(VI) in different background electrolytes: bicarbonate buffer, where a uranyl(VI)\u2011carbonate complex predominates, and synthetic Opalinus Clay pore water, where a uranyl(VI)-lactate complex occurs, as confirmed by time-resolved laser-induced fluorescence spectroscopic measurements. While Desulfitobacterium sp. G1-2 rapidly removed almost all U from the supernatants in bicarbonate buffer, only a low amount of U was removed in Opalinus Clay pore water. UV/Vis measurements suggest a speciation-dependent reduction by the microorganism. Scanning transmission electron microscopy coupled with energy-dispersive X-ray spectroscopy revealed the formation of two different U-containing nanoparticles inside the cells. In a subsequent step, artificial multispecies bio-aggregates were formed using derivatized polyelectrolytes with cells of Desulfitobacterium sp. G1-2 and Cobetia marina DSM 50416 to assess their potential for U(VI) reduction under aerobic and anaerobic conditions. These findings provide new perspectives on microbial U(VI) reduction and contribute to the development of a safety concept for high-level radioactive waste repositories, as well as to new bioremediation strategies.", "keywords": ["Biodegradation", " Environmental", "Iron", "Radioactive Waste", "Uranium", "Desulfitobacterium", "Oxidation-Reduction"], "contacts": [{"organization": "Stephan, Hilpmann, Isabelle, Jeschke, Ren\u00e9, H\u00fcbner, Dmitrii, Deev, Maja, Zugan, Toma\u017e, Rijavec, Ale\u0161, Lapanje, Stefan, Schymura, Andrea, Cherkouk,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.scitotenv.2024.177210"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.scitotenv.2024.177210", "name": "item", "description": "10.1016/j.scitotenv.2024.177210", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.scitotenv.2024.177210"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-12-01T00:00:00Z"}}, {"id": "10.1016/j.watres.2017.10.007", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:52Z", "type": "Journal Article", "created": "2017-10-27", "title": "The role of operating parameters and oxidative damage mechanisms of advanced chemical oxidation processes in the combat against antibiotic-resistant bacteria and resistance genes present in urban wastewater", "description": "An upsurge in the study of antibiotic resistance in the environment has been observed in the last decade. Nowadays, it is becoming increasingly clear that urban wastewater is a key source of antibiotic resistance determinants, i.e. antibiotic-resistant bacteria and antibiotic resistance genes (ARB&ARGs). Urban wastewater reuse has arisen as an important component of water resources management in the European Union and worldwide to address prolonged water scarcity issues. Especially, biological wastewater treatment processes (i.e. conventional activated sludge), which are widely applied in urban wastewater treatment plants, have been shown to provide an ideal environment for the evolution and spread of antibiotic resistance. The ability of advanced chemical oxidation processes (AOPs), e.g. light-driven oxidation in the presence of H2O2, ozonation, homogeneous and heterogeneous photocatalysis, to inactivate ARB and remove ARGs in wastewater effluents has not been yet evaluated through a systematic and integrated approach. Consequently, this review seeks to provide an extensive and critical appraisal on the assessment of the efficiency of these processes in inactivating ARB and removing ARGs in wastewater effluents, based on recent available scientific literature. It tries to elucidate how the key operating conditions may affect the process efficiency, while pinpointing potential areas for further research and major knowledge gaps which need to be addressed. Also, this review aims at shedding light on the main oxidative damage pathways involved in the inactivation of ARB and removal of ARGs by these processes. In general, the lack and/or heterogeneity of the available scientific data, as well as the different methodological approaches applied in the various studies, make difficult the accurate evaluation of the efficiency of the processes applied. Besides the operating conditions, the variable behavior observed by the various examined genetic constituents of the microbial community, may be directed by the process distinct oxidative damage mechanisms in place during the application of each treatment technology. For example, it was shown in various studies that the majority of cellular damage by advanced chemical oxidation may be on cell wall and membrane structures of the targeted bacteria, leaving the internal components of the cells relatively intact/able to repair damage. As a result, further in-depth mechanistic studies are required, to establish the optimum operating conditions under which oxidative mechanisms target internal cell components such as genetic material and ribosomal structures more intensively, thus conferring permanent damage and/or death and preventing potential post-treatment re-growth.", "keywords": ["Titanium", "Photolysis", "Bacteria", "Sewage", "Sulfates", "Ultraviolet Rays", "0211 other engineering and technologies", "Drug Resistance", " Microbial", "Hydrogen Peroxide", "02 engineering and technology", "Wastewater", "Oxidants", "01 natural sciences", "6. Clean water", "Water Purification", "12. Responsible consumption", "Oxidative Stress", "Ozone", "Genes", " Bacterial", "13. Climate action", "Antibiotic resistance Advanced chemical oxidation Inactivation mechanisms Wastewater treatment", "Drug Resistance", " Bacterial", "11. Sustainability", "Oxidation-Reduction", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.watres.2017.10.007"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Water%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.watres.2017.10.007", "name": "item", "description": "10.1016/j.watres.2017.10.007", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.watres.2017.10.007"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-02-01T00:00:00Z"}}, {"id": "10.1016/j.watres.2020.116748", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:52Z", "type": "Journal Article", "created": "2020-12-16", "title": "Electro-bioremediation of nitrate and arsenite polluted groundwater.", "description": "The coexistence of different pollutants in groundwater is a common threat. Sustainable and resilient technologies are required for their treatment. The present study aims to evaluate microbial electrochemical technologies (METs) for treating groundwater contaminated with nitrate (NO3-) while containing arsenic (in form of arsenite (As(III)) as a co-contaminant. The treatment was based on the combination of nitrate reduction to dinitrogen gas and arsenite oxidation to arsenate (exhibiting less toxicity, solubility, and mobility), which can be removed more easily in further post-treatment. We operated a bioelectrochemical reactor at continuous-flow mode with synthetic contaminated groundwater (33 mg N-NO3- L-1 and 5 mg As(III) L-1) identifying the key operational conditions. Different hydraulic retention times (HRT) were evaluated, reaching a maximum nitrate reduction rate of 519 g N-NO3- m3Net Cathodic Compartment d-1 at HRT of 2.3 h with a cathodic coulombic efficiency of around 100 %. Simultaneously, arsenic oxidation was complete at all HRT tested down to 1.6 h reaching an oxidation rate of up to 90 g As(III) m-3Net Reactor Volume d -1. Electrochemical and microbiological characterization of single granules suggested that arsenite at 5 mg L-1 did not have an inhibitory effect on a denitrifying biocathode mainly represented by Sideroxydans sp. Although the coexistence of abiotic and biotic arsenic oxidation pathways was shown to be likely, microbial arsenite oxidation linked to denitrification by Achromobacter sp. was the most probable pathway. This research paves the ground towards a real application for treating groundwater with widespread pollutants.", "keywords": ["Nitrates", "Arsenites", "0211 other engineering and technologies", "02 engineering and technology", "Bioremediaci\u00f3", "01 natural sciences", "6. Clean water", "Arsenic", "12. Responsible consumption", "Bioelectrochemistry", "Biodegradation", " Environmental", "13. Climate action", "Aig\u00fces subterr\u00e0nies -- Contaminaci\u00f3", "Denitrification", "Groundwater -- Pollution", "Desnitrificaci\u00f3", "Groundwater", "Oxidation-Reduction", "Bioremediation", "Water Pollutants", " Chemical", "Bioelectroqu\u00edmica", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.watres.2020.116748"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Water%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.watres.2020.116748", "name": "item", "description": "10.1016/j.watres.2020.116748", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.watres.2020.116748"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-01T00:00:00Z"}}, {"id": "10.1016/j.watres.2021.116940", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:52Z", "type": "Journal Article", "created": "2021-02-18", "title": "Micropollutants as internal probe compounds to assess UV fluence and hydroxyl radical exposure in UV/H2O2 treatment", "description": "Open AccessPublished by Elsevier Science, Amsterdam [u.a.]", "keywords": ["info:eu-repo/classification/ddc/550", "Photolysis", "550", "Hydroxyl Radical", "Ultraviolet Rays", "Humans", "Hydrogen Peroxide", "Oxidation-Reduction", "01 natural sciences", "Water Pollutants", " Chemical", "ddc:", "Water Purification", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.watres.2021.116940"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Water%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.watres.2021.116940", "name": "item", "description": "10.1016/j.watres.2021.116940", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.watres.2021.116940"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-05-01T00:00:00Z"}}, {"id": "10.1016/j.watres.2022.118628", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:52Z", "type": "Journal Article", "created": "2022-05-17", "title": "Investigation of hydrodynamic cavitation induced reactive oxygen species production in microchannels via chemiluminescent luminol oxidation reactions", "description": "Hydrodynamic cavitation was evaluated for its reactive oxygen species production in several convergent-divergent microchannel at the transition from micro to milli scale. Channel widths and heights were systematically varied to study the influence of geometrical parameters at the transitory scale. A photomultiplier tube was used for time-resolved photon detection and monitoring of the chemiluminescent luminol oxidation reactions, allowing for a contactless and in situ quantization of reactive oxygen species production in the channels. The radical production rates at various flow parameters were evaluated, showing an optimal yield per flow rate exists in the observed geometrical range. While cavitation cloud shedding was the prevailing regime in this type of channels, the photon arrival time analysis allowed for an investigation of the cavitation structure dynamics and their contribution to the chemical yield, revealing that radical production is not linked to the synchronous cavitation cloud collapse events. Instead, individual bubble collapses occurring throughout the cloud formation were recognized to be the source of the reactive oxygen species.", "keywords": ["convergent-divergent channels", "kemoluminiscenca", "free radicals", "Free radicals", "Photon counting", "microscale cavitation", "kavitacija", "info:eu-repo/classification/udc/532.528", "0404 agricultural biotechnology", "Microscale cavitation", "cavitation cloud shedding", "kavitacija", " prosti radikali", " kemoluminiscenca", "photon counting", "Convergent-divergent channels", "[SPI.FLUID] Engineering Sciences [physics]/Reactive fluid environment", "04 agricultural and veterinary sciences", "Luminol chemiluminescence", "Cavitation cloud shedding", "info:eu-repo/classification/udc/532", "Luminescent Measurements", "Hydrodynamics", "luminol chemiluminescence", "cavitation cloud shedding", " free radicals", " photon counting", " microscale cavitation", " luminol chemiluminescence", " convergent-divergent channels", "Luminol", "Reactive Oxygen Species", "0405 other agricultural sciences", "prosti radikali", "Oxidation-Reduction"]}, "links": [{"href": "https://doi.org/10.1016/j.watres.2022.118628"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Water%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.watres.2022.118628", "name": "item", "description": "10.1016/j.watres.2022.118628", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.watres.2022.118628"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-07-01T00:00:00Z"}}, {"id": "10.1021/acs.est.0c05203", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:58Z", "type": "Journal Article", "created": "2021-02-08", "title": "Mercury Reduction by Nanoparticulate Vivianite", "description": "Open AccessISSN:0013-936X", "keywords": ["abiotic Hg II reduction", "Chemical Sciences not elsewhere classified", "Physiology", "0211 other engineering and technologies", "02 engineering and technology", "Hg 0", "Hg II", "PO", "01 natural sciences", "Phosphates", "Environmental Sciences not elsewhere classified", "Ferrous Compounds", "Hg II reducers", "Molecular Biology", "ferrous iron phosphate mineral vivi.", "Ecosystem", "0105 earth and related environmental sciences", "Pharmacology", "Fe II content", "Ecology", "Nanoparticulate Vivianite Mercury", "Cell Biology", "Mercury", "6. Clean water", "Fe II 3", "13. Climate action", "Oxidation-Reduction", "Biological Sciences not elsewhere classified"]}, "links": [{"href": "https://pubs.acs.org/doi/pdf/10.1021/acs.est.0c05203"}, {"href": "https://doi.org/10.1021/acs.est.0c05203"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20%26amp%3B%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1021/acs.est.0c05203", "name": "item", "description": "10.1021/acs.est.0c05203", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1021/acs.est.0c05203"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-08T00:00:00Z"}}, {"id": "10.1021/acs.est.1c08789", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:58Z", "type": "Journal Article", "created": "2022-04-18", "title": "Stabilization of Ferrihydrite and Lepidocrocite by Silicate during Fe(II)-Catalyzed Mineral Transformation: Impact on Particle Morphology and Silicate Distribution", "description": "Open AccessISSN:0013-936X", "keywords": ["Minerals", "magnetite", "Silicates", "elemental mapping", "Water", "Ferric Compounds", "01 natural sciences", "Catalysis", "Ferrosoferric Oxide", "atom exchange", "Soil", "iron", "redox", "goethite", "Oxidation-Reduction", "crystal morphology", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://pubs.acs.org/doi/pdf/10.1021/acs.est.1c08789"}, {"href": "https://doi.org/10.1021/acs.est.1c08789"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20%26amp%3B%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1021/acs.est.1c08789", "name": "item", "description": "10.1021/acs.est.1c08789", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1021/acs.est.1c08789"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-18T00:00:00Z"}}, {"id": "10.1021/acs.est.2c03925", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:58Z", "type": "Journal Article", "created": "2022-08-23", "title": "Coexisting Goethite Promotes Fe(II)-Catalyzed Transformation of Ferrihydrite to Goethite", "description": "Open AccessISSN:0013-936X", "keywords": ["Minerals", "template-directed nucleation", "Fe(II)\u2212Fe(III) electron transfer", "recrystallization", "Water", "electron hopping", "Ferric Compounds", "01 natural sciences", "Catalysis", "Soil", "Isotopes", "13. Climate action", "Ferrous Compounds", "labile Fe(III)", "Oxidation-Reduction", "Iron Compounds", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://pubs.acs.org/doi/pdf/10.1021/acs.est.2c03925"}, {"href": "https://doi.org/10.1021/acs.est.2c03925"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20%26amp%3B%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1021/acs.est.2c03925", "name": "item", "description": "10.1021/acs.est.2c03925", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1021/acs.est.2c03925"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-08-23T00:00:00Z"}}, {"id": "10.1021/acs.est.3c00434", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:58Z", "type": "Journal Article", "created": "2023-06-26", "title": "A New Approach for Investigating Iron Mineral Transformations in Soils and Sediments Using 57Fe-Labeled Minerals and 57Fe M\u00f6ssbauer Spectroscopy", "description": "Open AccessIron minerals in soils and sediments play important roles in many biogeochemical processes and therefore influence the cycling of major and trace elements and the fate of pollutants in the environment. However, the kinetics and pathways of Fe mineral recrystallization and transformation processes under environmentally relevant conditions are still elusive. Here, we present a novel approach enabling us to follow the transformations of Fe minerals added to soils or sediments in close spatial association with complex solid matrices including other minerals, organic matter, and microorganisms. Minerals enriched with the stable isotope 57Fe are mixed with soil or sediment, and changes in Fe speciation are subsequently studied by 57Fe M\u00f6ssbauer spectroscopy, which exclusively detects 57Fe. In this study, 57Fe-labeled ferrihydrite was synthesized, mixed with four soils differing in chemical and physical properties, and incubated for 12+ weeks under anoxic conditions. Our results reveal that the formation of crystalline Fe(III)(oxyhydr)oxides such as lepidocrocite and goethite was strongly suppressed, and instead formation of a green rust-like phase was observed in all soils. These results contrast those from Fe(II)-catalyzed ferrihydrite transformation experiments, where formation of lepidocrocite, goethite, and/or magnetite often occurs. The presented approach allows control over the composition and crystallinity of the initial Fe mineral, and it can be easily adapted to other experimental setups or Fe minerals. It thus offers great potential for future investigations of Fe mineral transformations in situ under environmentally relevant conditions, in both the laboratory and the field.", "keywords": ["Minerals", "550", "Iron", "iron reduction", "01 natural sciences", "Ferric Compounds", "ferrihydrite", "microcosm", "Soil", "Spectroscopy", " Mossbauer", "green rust", "13. Climate action", "Oxidation-Reduction", "Fe(II)-catalyzed transformation", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1021/acs.est.3c00434"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20%26amp%3B%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1021/acs.est.3c00434", "name": "item", "description": "10.1021/acs.est.3c00434", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1021/acs.est.3c00434"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-06-26T00:00:00Z"}}, {"id": "10.1021/acs.est.3c01336", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:58Z", "type": "Journal Article", "created": "2023-06-09", "title": "Coprecipitation with Ferrihydrite Inhibits Mineralization of Glucuronic Acid in an Anoxic Soil", "description": "Open AccessISSN:0013-936X", "keywords": ["Soil", "Minerals", "Iron", "organic carbon", "anoxic soils", "organic carbon; anoxic soils; mineralization; iron minerals", "mineralization", "Ferric Compounds", "Oxidation-Reduction", "iron minerals", "Carbon"]}, "links": [{"href": "https://pubs.acs.org/doi/pdf/10.1021/acs.est.3c01336"}, {"href": "https://doi.org/10.1021/acs.est.3c01336"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20%26amp%3B%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1021/acs.est.3c01336", "name": "item", "description": "10.1021/acs.est.3c01336", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1021/acs.est.3c01336"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-06-09T00:00:00Z"}}, {"id": "10.1021/acs.est.4c01519", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:58Z", "type": "Journal Article", "created": "2024-06-04", "title": "Iron Oxyhydroxide Transformation in a Flooded Rice Paddy Field and the Effect of Adsorbed Phosphate", "description": "Open AccessISSN:0013-936X", "keywords": ["2. Zero hunger", "Minerals", "Iron", "iron reduction", "Oryza", "15. Life on land", "Ferric Compounds", "ferrihydrite", "6. Clean water", "Phosphates", "Mossbauer", "Soil", "Spectroscopy", " Mossbauer", "Fe(II)-catalyzed", "lepidocrocite", "13. Climate action", "microsite", "Adsorption", "isotope", "Oxidation-Reduction"]}, "links": [{"href": "https://pubs.acs.org/doi/pdf/10.1021/acs.est.4c01519"}, {"href": "https://doi.org/10.1021/acs.est.4c01519"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20%26amp%3B%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1021/acs.est.4c01519", "name": "item", "description": "10.1021/acs.est.4c01519", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1021/acs.est.4c01519"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-06-04T00:00:00Z"}}, {"id": "10.1021/acs.est.4c09261", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:17:58Z", "type": "Journal Article", "created": "2024-11-04", "title": "Geochemical Decoupling of Iron and Zinc during Transformation of Zn-Bearing Ferrihydrite in Reducing Sediments", "description": "Open AccessISSN:0013-936X", "keywords": ["Geologic Sediments", "zinc carbonate", "Iron", "Mossbauer spectroscopy", "X-ray absorption spectroscopy", "mineral transformation; Mossbauer spectroscopy; X-ray absorption spectroscopy; environmental speciation; green rust; zinc sulfide; zinc carbonate", "Ferric Compounds", "Zinc", "Spectroscopy", " Mossbauer", "green rust", "X-Ray Absorption Spectroscopy", "zinc sulfide", "Oxidation-Reduction", "mineral transformation", "environmental speciation"], "contacts": [{"organization": "Lefebvre, Pierre, Grigg, Andrew R. C., Kretzschmar, Ruben,", "roles": ["creator"]}]}, "links": [{"href": "https://pubs.acs.org/doi/pdf/10.1021/acs.est.4c09261"}, {"href": "https://doi.org/10.1021/acs.est.4c09261"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20%26amp%3B%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1021/acs.est.4c09261", "name": "item", "description": "10.1021/acs.est.4c09261", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1021/acs.est.4c09261"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-11-04T00:00:00Z"}}, {"id": "10.1021/acs.est.9b00345", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-05-30T16:17:59Z", "type": "Journal Article", "created": "2019-05-30", "title": "Cathode-Introduced Atomic H* for Fe(II)-Complex Regeneration to Effective Electro-Fenton Process at a Natural pH", "description": "Promotion of iron solubility using ligands is the preliminary step in the homogeneous electro-Fenton (EF) process at a mild pH, but the chelate efficiencies of most organic ligands are unsatisfactory, resulting in insufficient Fe(II) availability. In this study, atomic H* was, for the first time, introduced to the EF process to accelerate the regeneration of the Fe(II)-complex at a mild pH using a Ni-deposited carbon felt (Ni-CF) cathode. The introduction of atomic H* significantly elevated total organic carbon (TOC) abatement of ciprofloxacin (CIP) from 42% (CF) to 81% (Ni-CF) at a natural pH. In the presence of humic acids (HAs), atomic H* introduced via Ni-CF enhanced the CIP degradation rate to 10 times that of the CF at a mild pH. The electron spin resonance (ESR), density functional theory (DFT) calculations, electrochemical characterization, and in situ electrochemical Raman study clearly demonstrated that the atomic H* generated from the Ni-CF cathode was highly efficient at reducing Fe(III)-complexes at a natural pH. Additionally, the Ni-CF could generate atomic H* without significant nickel leaching. Thus, the atomic H* could continuously facilitate iron cycling and, consequently, enhance pollutant mineralization via the homogeneous EF process at a mild pH in an environmentally friendly manner.", "keywords": ["0211 other engineering and technologies", "Ferrous Compounds", "Hydrogen Peroxide", "02 engineering and technology", "Hydrogen-Ion Concentration", "Electrodes", "Ferric Compounds", "Oxidation-Reduction", "01 natural sciences", "Water Pollutants", " Chemical", "0105 earth and related environmental sciences"], "contacts": [{"organization": "Xiao-Cheng Liu, Wen-Qiang Li, Yi-Ran Wang, Guan-Nan Zhou, Yi-Xuan Wang, Chuan-Shu He, Gong-Ming Wang, Yang Mu,", "roles": ["creator"]}]}, "links": [{"href": "https://pubs.acs.org/doi/pdf/10.1021/acs.est.9b00345"}, {"href": "https://doi.org/10.1021/acs.est.9b00345"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20%26amp%3B%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1021/acs.est.9b00345", "name": "item", "description": "10.1021/acs.est.9b00345", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1021/acs.est.9b00345"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-05-22T00:00:00Z"}}, {"id": "10.1038/s41396-023-01467-0", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:18:18Z", "type": "Journal Article", "created": "2023-07-14", "title": "Nitrification and beyond: metabolic versatility of ammonia oxidising archaea", "description": "AbstractAmmonia oxidising archaea are among the most abundant living organisms on Earth and key microbial players in the global nitrogen cycle. They carry out oxidation of ammonia to nitrite, and their activity is relevant for both food security and climate change. Since their discovery nearly 20 years ago, major insights have been gained into their nitrogen and carbon metabolism, growth preferences and their mechanisms of adaptation to the environment, as well as their diversity, abundance and activity in the environment. Despite significant strides forward through the cultivation of novel organisms and omics-based approaches, there are still many knowledge gaps on their metabolism and the mechanisms which enable them to adapt to the environment. Ammonia oxidising microorganisms are typically considered metabolically streamlined and highly specialised. Here we review the physiology of ammonia oxidising archaea, with focus on aspects of metabolic versatility and regulation, and discuss these traits in the context of nitrifier ecology.Under controlled laboratory conditions, high and low ammonium availability are known to favor soil ammonia-oxidizing bacteria (AOB) and archaea (AOA) communities, respectively. However, whether this niche segregation is maintained under field conditions in terrestrial ecosystems remains unresolved, particularly at the global scale. We hypothesized that perennial vegetation might favor AOB vs. AOA communities compared with adjacent open areas devoid of perennial vegetation (i.e., bare soil) via several mechanisms, including increasing the amount of ammonium in soil. To test this niche-differentiation hypothesis, we conducted a global field survey including 80 drylands from 6 continents. Data supported our hypothesis, as soils collected under plant canopies had higher levels of ammonium, as well as higher richness (number of terminal restriction fragments; T-RFs) and abundance (qPCR amoA genes) of AOB, and lower richness and abundance of AOA, than those collected in open areas located between plant canopies. Some of the reported associations between plant canopies and AOA and AOB communities can be a consequence of the higher organic matter and available N contents found under plant canopies. Other aspects of soils associated with vegetation including shading and microclimatic conditions might also help explain our results. Our findings provide strong evidence for niche differentiation between AOA and AOB communities in drylands worldwide, advancing our understanding of their ecology and biogeography at the global scale.Significant rates of atmospheric dihydrogen (H2) consumption have been observed in temperate soils due to the activity of high-affinity enzymes, such as the group 1h [NiFe]-hydrogenase. We designed broadly inclusive primers targeting the large subunit gene (hhyL) of group 1h [NiFe]-hydrogenases for long-read sequencing to explore its taxonomic distribution across soils. This approach revealed a diverse collection of microorganisms harboring hhyL, including previously unknown groups and taxonomically not assignable sequences. Acidobacterial group 1h [NiFe]-hydrogenase genes were abundant and expressed in temperate soils. To support the participation of acidobacteria in H2 consumption, we studied two representative mesophilic soil acidobacteria, which expressed group 1h [NiFe]-hydrogenases and consumed atmospheric H2 during carbon starvation. This is the first time mesophilic acidobacteria, which are abundant in ubiquitous temperate soils, have been shown to oxidize H2 down to below atmospheric concentrations. As this physiology allows bacteria to survive periods of carbon starvation, it could explain the success of soil acidobacteria. With our long-read sequencing approach of group 1h [NiFe]-hydrogenase genes, we show that the ability to oxidize atmospheric levels of H2 is more widely distributed among soil bacteria than previously recognized and could represent a common mechanism enabling bacteria to persist during periods of carbon deprivation.Nitrification, the oxidation of ammonia to nitrate, is an essential process in the biogeochemical nitrogen cycle. The first step of nitrification, ammonia oxidation, is performed by three, often co-occurring guilds of chemolithoautotrophs: ammonia-oxidizing bacteria (AOB), archaea (AOA), and complete ammonia oxidizers (comammox). Substrate kinetics are considered to be a major niche-differentiating factor between these guilds, but few AOA strains have been kinetically characterized. Here, the ammonia oxidation kinetic properties of 12 AOA representing all major cultivated phylogenetic lineages were determined using microrespirometry. Members of the genus Nitrosocosmicus have the lowest affinity for both ammonia and total ammonium of any characterized AOA, and these values are similar to previously determined ammonia and total ammonium affinities of AOB. This contrasts previous assumptions that all AOA possess much higher substrate affinities than their comammox or AOB counterparts. The substrate affinity of ammonia oxidizers correlated with their cell surface area to volume ratios. In addition, kinetic measurements across a range of pH values supports the hypothesis that\uffe2\uff80\uff94like for AOB\uffe2\uff80\uff94ammonia and not ammonium is the substrate for the ammonia monooxygenase enzyme of AOA and comammox. Together, these data will facilitate predictions and interpretation of ammonia oxidizer community structures and provide a robust basis for establishing testable hypotheses on competition between AOB, AOA, and comammox.Archaeal (AOA) and bacterial (AOB) ammonia-oxidizer responses to long-term field fertilization in a Mollisol soil were assessed through pyrosequencing of amoA genes. Long-term fertilization treatments including chemical fertilizer (NPK), NPK plus manure (NPKM) and no fertilization over 23 years altered soil properties resulting in significant shifts in AOA and AOB community composition and abundance. NPK exhibited a strong influence on AOA and AOB composition while the addition of manure neutralized the community change induced by NPK. NPK also led to significant soil acidification and enrichment of Nitrosotalea. Nitrosospira cluster 9 and 3c were the most abundant AOB populations with opposing responses to fertilization treatments. NPKM had the largest abundance of ammonia-oxidizers and highest potential nitrification activity (PNA), suggesting high N loss potential due to a doubling of nutrient input compared to NPK. PNA was strongly correlated to AOA and AOB community composition indicating that both were important in ammonium oxidization in this Mollisol soil. Total N and organic C were the most important factors driving shifts in AOA and AOB community composition. The AOA community was strongly correlated to the activities of all sugar hydrolysis associated soil enzymes and was more responsive to C and N input than AOB.
", "keywords": ["0301 basic medicine", "2. Zero hunger", "Bacteria", "Agriculture", "Sequence Analysis", " DNA", "04 agricultural and veterinary sciences", "15. Life on land", "Archaea", "Biota", "Article", "6. Clean water", "Genes", " Archaeal", "03 medical and health sciences", "Ammonia", "Genes", " Bacterial", "0401 agriculture", " forestry", " and fisheries", "Fertilizers", "Oxidation-Reduction", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1038/srep28981"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Scientific%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/srep28981", "name": "item", "description": "10.1038/srep28981", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/srep28981"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-06-30T00:00:00Z"}}, {"id": "10.1038/srep32791", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:18:26Z", "type": "Journal Article", "created": "2016-09-06", "title": "Responses Of Soil Hydrolytic Enzymes, Ammonia-Oxidizing Bacteria And Archaea To Nitrogen Applications In A Temperate Grassland In Inner Mongolia", "description": "AbstractWe used a seven-year urea gradient applied field experiment to investigate the effects of nitrogen (N) applications on soil N hydrolytic enzyme activity and ammonia-oxidizing microbial abundance in a typical steppe ecosystem in Inner Mongolia. The results showed that N additions inhibited the soil N-related hydrolytic enzyme activities, especially in 392\uffe2\uff80\uff89kg N ha\uffe2\uff88\uff921\uffe2\uff80\uff89yr\uffe2\uff88\uff921 treatment. As N additions increased, the amoA gene copy ratios of ammonia-oxidizing archaea (AOA) to ammonia-oxidizing bacteria (AOB) decreased from 1.13 to 0.65. Pearson correlation analysis showed that the AOA gene copies were negatively related with NH4+-N content. However, the AOB gene copies were positively correlated with NO3\uffe2\uff88\uff92-N content. Moderate N application rates (56\uffe2\uff80\uff93224\uffe2\uff80\uff89kg N ha\uffe2\uff88\uff921\uffe2\uff80\uff89yr\uffe2\uff88\uff921) accompanied by P additions are beneficial to maintaining the abundance of AOB, as opposed to the inhibition of highest N application rate (392\uffe2\uff80\uff89kg N ha\uffe2\uff88\uff921\uffe2\uff80\uff89yr\uffe2\uff88\uff921) on the abundance of AOB. This study suggests that the abundance of AOB and AOA would not decrease unless N applications exceed 224\uffe2\uff80\uff89kg N ha\uffe2\uff88\uff921\uffe2\uff80\uff89yr\uffe2\uff88\uff921 in temperate grasslands in Inner Mongolia.
", "keywords": ["2. Zero hunger", "China", "Bacteria", "Nitrogen", "Hydrolysis", "04 agricultural and veterinary sciences", "15. Life on land", "Archaea", "Grassland", "Nitrification", "Article", "Soil", "Ammonia", "0401 agriculture", " forestry", " and fisheries", "Fertilizers", "Oxidation-Reduction", "Ecosystem", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1038/srep32791"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Scientific%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/srep32791", "name": "item", "description": "10.1038/srep32791", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/srep32791"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-09-06T00:00:00Z"}}, {"id": "10.1039/d2em00290f", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:18:28Z", "type": "Journal Article", "created": "2022-09-22", "title": "Ferrihydrite transformations in flooded paddy soils: rates, pathways, and product spatial distributions", "description": "The rate and pathway of ferrihydrite transformation in soil depends on the properties of the soil pore water and diffusion processes.
We studied the transformation of 57Fe-labelled ferrihydrite and lepidocrocite mixed with a flooded paddy soil by using 57Fe-M\uffc3\uffb6ssbauer spectroscopy.Ferrihydrite, a poorly crystalline Fe(iii)-oxyhydroxide, is abundant in soils and is often found associated with organic matter. Siderite is stabilised against oxidation in the presence of Low Molecular Weight Organic Acids (LMWOAs) with implications for iron mineral transformations and therefore contaminant and nutrient cycling.
Microbial soil habitats are characterized by rapid shifts in substrate and nutrient availabilities, as well as chemical and physical parameters. One such parameter that can vary in soil is oxygen; thus, microbial survival is dependent on adaptation to this substrate. To better understand the metabolic abilities and adaptive strategies to oxygen-deprived environments, we combined genomics with transcriptomics of a model organism, Acidobacterium capsulatum, to explore the effect of decreasing, environmentally relevant oxygen concentrations. The decrease from 10 to 0.1\uffc2\uffa0\uffc2\uffb5M oxygen (3.6 to 0.036 pO2% present atmospheric level, respectively) caused the upregulation of the transcription of genes involved in signal transduction mechanisms, energy production and conversion and secondary metabolites biosynthesis, transport, and catabolism based on clusters of orthologous group categories. Contrary to established observations for aerobic metabolism, key genes in oxidative stress response were significantly upregulated at lower oxygen concentrations, presumably due to an NADH/NAD+ redox ratio imbalance as the cells transitioned into nanoxia. Furthermore, A. capsulatum adapted to nanoxia by inducing a respiro-fermentative metabolism and rerouting fluxes of its central carbon and energy pathways to adapt to high NADH/NAD+ redox ratios. Our results reveal physiological features and metabolic capabilities that allowed A. capsulatum to adapt to oxygen-limited conditions, which could expand into other environmentally relevant soil strains.Ammonia-oxidising archaea (AOA) are environmentally important microorganisms involved in the biogeochemical cycling of nitrogen. Routine cultivation of AOA is exclusively performed in liquid cultures and reports on their growth on solid medium are scarce. The ability to grow AOA on solid medium would be beneficial for not only the purification of enrichment cultures but also for developing genetic tools. The aim of this study was to develop a reliable method for growing individual colonies from AOA cultures on solid medium. Three phylogenetically distinct AOA strains were tested: \uffe2\uff80\uff98Candidatus Nitrosocosmicus franklandus C13\uffe2\uff80\uff99, Nitrososphaera viennensis EN76 and \uffe2\uff80\uff98Candidatus Nitrosotalea sinensis Nd2\uffe2\uff80\uff99. Of the gelling agents tested, agar and Bacto-agar severely inhibited growth of all three strains. In contrast, both \uffe2\uff80\uff98Ca. N. franklandus C13\uffe2\uff80\uff99 and N. viennensis EN76 tolerated Phytagel\uffe2\uff84\uffa2 while the acidophilic \uffe2\uff80\uff98Ca. N. sinensis Nd2\uffe2\uff80\uff99 was completely inhibited. Based on these observations, we developed a Liquid-Solid (LS) method that involves immobilising cells in Phytagel\uffe2\uff84\uffa2 and overlaying with liquid medium. This approach resulted in the development of visible distinct colonies from \uffe2\uff80\uff98Ca. N. franklandus C13\uffe2\uff80\uff99 and N. viennensis EN76 cultures and lays the groundwork for the genetic manipulation of this group of microorganisms.Ammonia oxidizers are key players in the global nitrogen cycle and are responsible for the oxidation of ammonia to nitrite, which is further oxidized to nitrate by other microorganisms. Their activity can lead to adverse effects on some human-impacted environments, including water pollution through leaching of nitrate and emissions of the greenhouse gas nitrous oxide (N2O). Ammonia monooxygenase (AMO) is the key enzyme in microbial ammonia oxidation and shared by all groups of aerobic ammonia oxidizers. The AMO has not been purified in an active form, and much of what is known about its potential structure and function comes from studies on its interactions with inhibitors. The archaeal AMO is less well studied as ammonia oxidizing archaea were discovered much more recently than their bacterial counterparts. The inhibition of ammonia oxidation by aliphatic alcohols (C1-C8) using the model terrestrial ammonia oxidizing archaeon \uffe2\uff80\uff98Candidatus Nitrosocosmicus franklandus\uffe2\uff80\uff99 C13 and the ammonia oxidizing bacterium Nitrosomonas europaea was examined in order to expand knowledge about the range of inhibitors of ammonia oxidizers. Methanol was the most potent specific inhibitor of the AMO in both ammonia oxidizers, with half-maximal inhibitory concentrations (IC50) of 0.19 and 0.31\uffe2\uff80\uff89mM, respectively. The inhibition was AMO-specific in \uffe2\uff80\uff98Ca. N. franklandus\uffe2\uff80\uff99 C13 in the presence of C1-C2 alcohols, and in N. europaea in the presence of C1-C3 alcohols. Higher chain-length alcohols caused non-specific inhibition and also inhibited hydroxylamine oxidation. Ethanol was tolerated by \uffe2\uff80\uff98Ca. N. franklandus\uffe2\uff80\uff99 C13 at a higher threshold concentration than other chain-length alcohols, with 80\uffe2\uff80\uff89mM ethanol being required for complete inhibition of ammonia oxidation.Heterotrophic nitrifiers are able to oxidize and remove ammonia from nitrogen\uffe2\uff80\uff90rich wastewaters but the genetic elements of heterotrophic ammonia oxidation are poorly understood. Here, we isolated and identified a novel heterotrophic nitrifier, Alcaligenes ammonioxydans sp. nov. strain HO\uffe2\uff80\uff901, oxidizing ammonia to hydroxylamine and ending in the production of N2 gas. Genome analysis revealed that strain HO\uffe2\uff80\uff901 encoded a complete denitrification pathway but lacks any genes coding for homologous to known ammonia monooxygenases or hydroxylamine oxidoreductases. Our results demonstrated strain HO\uffe2\uff80\uff901 denitrified nitrite (not nitrate) to N2 and N2O at anaerobic and aerobic conditions respectively. Further experiments demonstrated that inhibition of aerobic denitrification did not stop ammonia oxidation and N2 production. A gene cluster (dnfT1RT2ABCD) was cloned from strain HO\uffe2\uff80\uff901 and enabled E. coli accumulated hydroxylamine. Sub\uffe2\uff80\uff90cloning showed that genetic cluster dnfAB or dnfABC already enabled E. coli cells to produce hydroxylamine and further to 15N2 from (15NH4)2SO4. Transcriptome analysis revealed these three genes dnfA, dnfB and dnfC were significantly upregulated in response to ammonia stimulation. Taken together, we concluded that strain HO\uffe2\uff80\uff901 has a novel dnf genetic cluster for ammonia oxidation and this dnf genetic cluster encoded a previously unknown pathway of direct ammonia oxidation (Dirammox) to N2.
", "keywords": ["Alcaligenes ammonioxydans sp. nov.", "0301 basic medicine", "106014 Genomics", "Nitrogen", "HYDROXYLAMINE OXIDASE", "direct ammonia oxidation (Dirammox)", "OXIDATION", "REDUCTASE", "Water Purification", "THIOSPHAERA-PANTOTROPHA", "PYRUVIC-OXIME", "03 medical and health sciences", "heterotrophic nitrifier", "Ammonia", "106014 Genomik", "Escherichia coli", "Alcaligenes", "wastewater", "Nitrites", "106022 Mikrobiologie", "HETEROTROPHIC NITRIFICATION", "0303 health sciences", "PURIFICATION", "Sewage", "AEROBIC DENITRIFICATION", "Nitrification", "Aerobiosis", "6. Clean water", "NITROGEN", "FAECALIS", "Denitrification", "106022 Microbiology", "Oxidation-Reduction"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.15751"}, {"href": "https://doi.org/10.1111/1462-2920.15751"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.15751", "name": "item", "description": "10.1111/1462-2920.15751", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.15751"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-09-28T00:00:00Z"}}, {"id": "10.1111/1462-2920.16316", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:19:16Z", "type": "Journal Article", "created": "2023-01-04", "title": "The effect of methane and methanol on the terrestrial ammonia\u2010oxidizing archaeon \u2018Candidatus Nitrosocosmicus franklandus C13\u2019", "description": "AbstractThe ammonia monooxygenase (AMO) is a key enzyme in ammonia\uffe2\uff80\uff90oxidizing archaea, which are abundant and ubiquitous in soil environments. The AMO belongs to the copper\uffe2\uff80\uff90containing membrane monooxygenase (CuMMO) enzyme superfamily, which also contains particulate methane monooxygenase (pMMO). Enzymes in the CuMMO superfamily are promiscuous, which results in co\uffe2\uff80\uff90oxidation of alternative substrates. The phylogenetic and structural similarity between the pMMO and the archaeal AMO is well\uffe2\uff80\uff90established, but there is surprisingly little information on the influence of methane and methanol on the archaeal AMO and terrestrial nitrification. The aim of this study was to examine the effects of methane and methanol on the soil ammonia\uffe2\uff80\uff90oxidizing archaeon \uffe2\uff80\uff98Candidatus Nitrosocosmicus franklandus C13\uffe2\uff80\uff99. We demonstrate that both methane and methanol are competitive inhibitors of the archaeal AMO. The inhibition constants (Ki) for methane and methanol were 2.2 and 20\uffe2\uff80\uff89\uffce\uffbcM, respectively, concentrations which are environmentally relevant and orders of magnitude lower than those previously reported for ammonia\uffe2\uff80\uff90oxidizing bacteria. Furthermore, we demonstrate that a specific suite of proteins is upregulated and downregulated in \uffe2\uff80\uff98Ca. Nitrosocosmicus franklandus C13\uffe2\uff80\uff99 in the presence of methane or methanol, which provides a foundation for future studies into metabolism of one\uffe2\uff80\uff90carbon (C1) compounds in ammonia\uffe2\uff80\uff90oxidizing archaea.Ammonia\uffe2\uff80\uff90oxidising archaea (AOA) are important microorganisms contributing towards the nitrogen flux in the environment. Unlike archaea from other major phyla, genetic tools are yet to be developed for the AOA, and identification of antibiotic resistance markers for selecting mutants is required for a genetic system. The aim of this study was to test the effects of selected antibiotics (hygromycin B, neomycin, apramycin, puromycin, novobiocin) on pure cultures of three well studied AOA strains, \uffe2\uff80\uff98Candidatus Nitrosocosmicus franklandianus C13\uffe2\uff80\uff99, Nitrososphaera viennensis EN76 and Nitrosopumilus maritimus SCM1. Puromycin, hygromycin B and neomycin inhibited some but not all tested archaeal strains. All strains were resistant to apramycin and inhibited by novobiocin to various degrees. As N. viennensis EN76 was relatively more resistant to the tested antibiotics, a wider range of concentrations and compounds (chloramphenicol, trimethoprim, statins) was tested against this strain. N. viennensis EN76 was inhibited by trimethoprim, but not by chloramphenicol, and growth recovered within days in the presence of simvastatin, suggesting either degradation of, or spontaneous resistance against, this compound. This study highlights the physiological differences between different genera of AOA and has identified new candidate antibiotics for selective enrichment and the development of selectable markers for genetic systems in AOA.Anthropogenic nitrogen (N) loading alters soil ammonia\uffe2\uff80\uff90oxidizing archaea (AOA) and bacteria (AOB) abundances, likely leading to substantial changes in soil nitrification. However, the factors and mechanisms determining the responses of soil AOA:AOB and nitrification to N loading are still unclear, making it difficult to predict future changes in soil nitrification. Herein, we synthesize\uffc2\uffa068 field studies around the world to evaluate the impacts of N loading on soil ammonia oxidizers and nitrification. Across a wide range of biotic and abiotic factors, climate is the most important driver of the responses of AOA:AOB to N loading. Climate does not directly affect the N\uffe2\uff80\uff90stimulation of nitrification, but does so via climate\uffe2\uff80\uff90related shifts in AOA:AOB. Specifically, climate modulates the responses of AOA:AOB to N loading by affecting soil pH, N\uffe2\uff80\uff90availability and moisture. AOB play a dominant role in affecting nitrification in dry climates, while the impacts from AOA can exceed AOB in humid climates. Together, these results suggest that climate\uffe2\uff80\uff90related shifts in soil ammonia\uffe2\uff80\uff90oxidizing community maintain the N\uffe2\uff80\uff90stimulation of nitrification, highlighting the importance of microbial community composition in mediating the responses of the soil N cycle to N loading.
A large fraction of plant litter comprises recalcitrant aromatic compounds (lignin and other phenolics). Quantifying the fate of aromatic compounds is difficult, because oxidative degradation of aromatic carbon (C) is a costly but necessary endeavor for microorganisms, and we do not know when gains from the decomposition of aromatic C outweigh energetic costs.
To evaluate these tradeoffs, we developed a litter decomposition model in which the aromatic C decomposition rate is optimized dynamically to maximize microbial growth for the given costs of maintaining ligninolytic activity. We tested model performance against >\uffe2\uff80\uff89200 litter decomposition datasets collected from published literature and assessed the effects of climate and litter chemistry on litter decomposition.
The model predicted a time\uffe2\uff80\uff90varying ligninolytic oxidation rate, which was used to calculate the lag time before the decomposition of aromatic C is initiated. Warmer conditions increased decomposition rates, shortened the lag time of aromatic C oxidation, and improved microbial C\uffe2\uff80\uff90use efficiency by decreasing the costs of oxidation. Moreover, a higher initial content of aromatic C promoted an earlier start of aromatic C decomposition under any climate.
With this contribution, we highlight the application of eco\uffe2\uff80\uff90evolutionary approaches based on optimized microbial life strategies as an alternative parametrization scheme for litter decomposition models.
Ombrotrophic peatlands are a recognized global carbon reservoir. Without restoration and peat regrowth, harvested peatlands are dramatically altered, impairing their carbon sink function, with consequences for methane turnover. Previous studies determined the impact of commercial mining on the physicochemical properties of peat and the effects on methane turnover. However, the response of the underlying microbial communities catalyzing methane production and oxidation have so far received little attention. We hypothesize that with the return of Sphagnum spp. postharvest, methane turnover potential and the corresponding microbial communities will converge in a natural and restored peatland. To address our hypothesis, we determined the potential methane production and oxidation rates in natural (as a reference), actively mined, abandoned, and restored peatlands over two consecutive years. In all sites, the methanogenic and methanotrophic population sizes were enumerated using quantitative PCR (qPCR) assays targeting the mcrA and pmoA genes, respectively. Shifts in the community composition were determined using Illumina MiSeq sequencing of the mcrA gene and a pmoA -based terminal restriction fragment length polymorphism (t-RFLP) analysis, complemented by cloning and sequence analysis of the mmoX gene. Peat mining adversely affected methane turnover potential, but the rates recovered in the restored site. The recovery in potential activity was reflected in the methanogenic and methanotrophic abundances. However, the microbial community composition was altered, being more pronounced for the methanotrophs. Overall, we observed a lag between the recovery of the methanogenic/methanotrophic activity and the return of the corresponding microbial communities, suggesting that a longer duration (>15 years) is needed to reverse mining-induced effects on the methane-cycling microbial communities.IMPORTANCE Ombrotrophic peatlands are a crucial carbon sink, but this environment is also a source of methane, an important greenhouse gas. Methane emission in peatlands is regulated by methane production and oxidation catalyzed by methanogens and methanotrophs, respectively. Methane-cycling microbial communities have been documented in natural peatlands. However, less is known of their response to peat mining and of the recovery of the community after restoration. Mining exerts an adverse impact on potential methane production and oxidation rates and on methanogenic and methanotrophic population abundances. Peat mining also induced a shift in the methane-cycling microbial community composition. Nevertheless, with the return of Sphagnum spp. in the restored site after 15 years, methanogenic and methanotrophic activity and population abundance recovered well. The recovery, however, was not fully reflected in the community composition, suggesting that >15 years are needed to reverse mining-induced effects.
", "keywords": ["0301 basic medicine", "570", "oxidation", "hiili", "ta1172", "Euryarchaeota", "630", "Mining", "Soil", "03 medical and health sciences", "Sphagnum", "Bacterial Proteins", "Nitrogen Fixation", "Sphagnopsida", "14. Life underwater", "ennallistaminen", "turvemaat", "Ecosystem", "Phylogeny", "Soil Microbiology", "0303 health sciences", "nifH", "methane", "Microbiota", "ta1182", "land use", "methanogenesis", "15. Life on land", "Carbon", "kasvihuonekaasup\u00e4\u00e4st\u00f6t", "nitrogen fixation", "13. Climate action", "international", "Wetlands", "Oxygenases", "ta1181", "Methane", "Oxidation-Reduction"]}, "links": [{"href": "https://journals.asm.org/doi/pdf/10.1128/AEM.02218-17"}, {"href": "https://doi.org/10.1128/aem.02218-17"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.02218-17", "name": "item", "description": "10.1128/aem.02218-17", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.02218-17"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-02-01T00:00:00Z"}}, {"id": "10.1128/aem.71.5.2713-2722.2005", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:19:56Z", "type": "Journal Article", "created": "2005-05-03", "title": "Changes In Nitrogen-Fixing And Ammonia-Oxidizing Bacterial Communities In Soil Of A Mixed Conifer Forest After Wildfire", "description": "ABSTRACTThis study was undertaken to examine the effects of forest fire on two important groups of N-cycling bacteria in soil, the nitrogen-fixing and ammonia-oxidizing bacteria. Sequence and terminal restriction fragment length polymorphism (T-RFLP) analysis of nifH and amoA PCR amplicons was performed on DNA samples from unburned, moderately burned, and severely burned soils of a mixed conifer forest. PCR results indicated that the soil biomass and proportion of nitrogen-fixing and ammonia-oxidizing species was less in soil from the fire-impacted sites than from the unburned sites. The number of dominant nifH sequence types was greater in fire-impacted soils, and nifH sequences that were most closely related to those from the spore-forming taxa Clostridium and Paenibacillus were more abundant in the burned soils. In T-RFLP patterns of the ammonia-oxidizing community, terminal restriction fragments (TRFs) representing amoA cluster 1, 2, or 4 Nitrosospira spp. were dominant (80 to 90%) in unburned soils, while TRFs representing amoA cluster 3A Nitrosospira spp. dominated (65 to 95%) in fire-impacted soils. The dominance of amoA cluster 3A Nitrosospira spp. sequence types was positively correlated with soil pH (5.6 to 7.5) and NH 3 -N levels (0.002 to 0.976 ppm), both of which were higher in burned soils. The decreased microbial biomass and shift in nitrogen-fixing and ammonia-oxidizing communities were still evident in fire-impacted soils collected 14 months after the fire.
", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Bacteria", "Base Sequence", "Molecular Sequence Data", "15. Life on land", "Polymerase Chain Reaction", "Fires", "Trees", "Soil", "03 medical and health sciences", "Ammonia", "Nitrogen Fixation", "Oxidoreductases", "Oxidation-Reduction", "Polymorphism", " Restriction Fragment Length", "Soil Microbiology"], "contacts": [{"organization": "Chris M. Yeager, Diana E. Northup, Susan M. Barns, Cheryl R. Kuske, Christy C. Grow,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1128/aem.71.5.2713-2722.2005"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.71.5.2713-2722.2005", "name": "item", "description": "10.1128/aem.71.5.2713-2722.2005", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.71.5.2713-2722.2005"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-05-01T00:00:00Z"}}, {"id": "10.1631/jzus.b1200013", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:20:36Z", "type": "Journal Article", "created": "2012-10-03", "title": "Abundance And Composition Of Ammonia-Oxidizing Bacteria And Archaea In Different Types Of Soil In The Yangtze River Estuary", "description": "Tidal flats are soil resources of great significance. Nitrification plays a central role in the nitrogen cycle and is often a critical first step in nitrogen removal from estuarine and coastal environments. We determined the abundance as well as composition of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) in different soils during land reclamation process. The abundance of AOA was higher than that of AOB in farm land and wild land while AOA was not detected in tidal flats using real-time polymerase chain reaction (PCR). The different abundances of AOB and AOA were negatively correlated with the salinity. The diversities of AOB and AOA were also investigated using clone libraries by amplification of amoA gene. Among AOB, nearly all sequences belonged to the Nitrosomonas lineage in the initial land reclamation process, i.e., tidal flats, while both Nitrosomonas and Nitrosospira lineages were detected in later and transition phases of land reclamation process, farm land and wild land. The ratio of the numbers of sequences of Nitrosomonas and Nitrosospira lineages was positively correlated with the salinity and the net nitrification rate. As for AOA, there was no obvious correlation with the changes in the physicochemical properties of the soil. This study suggests that AOB may be more import than AOA with respect to influencing the different land reclamation process stages.", "keywords": ["DNA", " Bacterial", "0301 basic medicine", "China", "Conservation of Natural Resources", "Archaeal Proteins", "Molecular Sequence Data", "Genes", " Archaeal", "03 medical and health sciences", "Bacterial Proteins", "Rivers", "Ammonia", "14. Life underwater", "Phylogeny", "0303 health sciences", "Bacteria", "Biodiversity", "Nitrogen Cycle", "15. Life on land", "Archaea", "Nitrification", "6. Clean water", "DNA", " Archaeal", "Genes", " Bacterial", "13. Climate action", "Estuaries", "Oxidoreductases", "Oxidation-Reduction"]}, "links": [{"href": "https://doi.org/10.1631/jzus.b1200013"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Zhejiang%20University%20SCIENCE%20B", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1631/jzus.b1200013", "name": "item", "description": "10.1631/jzus.b1200013", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1631/jzus.b1200013"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-10-01T00:00:00Z"}}, {"id": "2311.04674", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:26:56Z", "type": "Journal Article", "created": "2024-04-09", "title": "Direct electrochemical reduction of graphene oxide thin film for aptamer-based selective and highly sensitive detection of matrix metalloproteinase 2", "description": "Simple and low-cost biosensing solutions are suitable for point-of-care applications aiming to overcome the gap between scientific concepts and technological production. To compete with sensitivity and selectivity of golden standards, such as liquid chromatography, the functionalization of biosensors is continuously optimized to enhance the signal and improve their performance, often leading to complex chemical assay development. In this research, the efforts are made on optimizing the methodology for electrochemical reduction of graphene oxide to produce thin film-modified gold electrodes. Under the employed specific conditions, 20 cycles of cyclic voltammetry (CV) are shown to be optimal for superior electrical activation of graphene oxide into electrochemically reduced graphene oxide (ERGO). This platform is further used to develop a matrix metalloproteinase 2 (MMP-2) biosensor, where specific anti-MMP2 aptamers are utilized as a biorecognition element. MMP-2 is a protein which is typically overexpressed in tumor tissues, with important roles in tumor invasion, metastasis as well as in tumor angiogenesis. Based on impedimetric measurements, we were able to detect as low as 3.32 pg/mL of MMP-2 in PBS with a dynamic range of 10 pg/mL - 10 ng/mL. Besides high specificity, ERGO-based aptasensor showed a potential of reuse due to demonstrated successful signal restoration after experimental detection of MMP-2.", "keywords": ["Physics - Instrumentation and Detectors", "FOS: Physical sciences", "Biomolecules (q-bio.BM)", "Physics - Applied Physics", "Electrochemical Techniques", "Biosensing Techniques", "02 engineering and technology", "Applied Physics (physics.app-ph)", "Instrumentation and Detectors (physics.ins-det)", "Aptamers", " Nucleotide", "01 natural sciences", "0104 chemical sciences", "03 medical and health sciences", "0302 clinical medicine", "Quantitative Biology - Biomolecules", "Limit of Detection", "FOS: Biological sciences", "Matrix Metalloproteinase 2", "Humans", "Graphite", "Gold", "0210 nano-technology", "Oxidation-Reduction", "Electrodes"]}, "links": [{"href": "https://doi.org/2311.04674"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Talanta", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2311.04674", "name": "item", "description": "2311.04674", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2311.04674"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-07-01T00:00:00Z"}}, {"id": "10.2134/jeq2006.0501", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-05-30T16:21:00Z", "type": "Journal Article", "created": "2007-10-17", "title": "Methane Oxidation In An Intensively Cropped Tropical Rice Field Soil Under Long-Term Application Of Organic And Mineral Fertilizers", "description": "AbstractMethane (CH4) oxidation is the only known biological sink process for mitigating atmospheric and terrestrial emissions of CH4, a major greenhouse gas. Methane oxidation in an alluvial soil planted to rice (Oryza sativaL.) under long\uffe2\uff80\uff90term application of organic (compost with a C/N ratio of 21.71), and mineral fertilizers was measured in a field\uffe2\uff80\uff90cum\uffe2\uff80\uff90laboratory incubation study. Oxidation rates were quantified in terms of decrease in the concentration of CH4in the headspace of incubation vessels and expressed as half\uffe2\uff80\uff90life (t\uffc2\uffbd) values. Methane oxidation rates significantly differed among the treatments and growth stages of the rice crop. Methane oxidation rates were high at the maximum tillering and maturity stages, whereas they were low at grain\uffe2\uff80\uff90filling stage. Methane oxidation was low (t\uffc2\uffbd= 15.76 d) when provided with low concentration of CH4On the contrary, high concentration of CH4resulted in faster oxidation (t\uffc2\uffbd= 6.67 d), suggesting the predominance of \uffe2\uff80\uff9clow affinity oxidation\uffe2\uff80\uff9d in rice fields. Methane oxidation was stimulated following the application of mineral fertilizers or compost implicating nutrient limitation as one of the factors affecting the process. Combined application of compost and mineral fertilizer, however, inhibited CH4oxidation probably due to N immobilization by the added compost. The positive effect of mineral fertilizer on CH4oxidation rate was evident only at high CH4concentration (t\uffc2\uffbd= 4.80 d), while at low CH4concentration their was considerable suppression (t\uffc2\uffbd= 17.60 d). Further research may reveal that long\uffe2\uff80\uff90term application of fertilizers, organic or inorganic, may not inhibit CH4oxidation.
", "keywords": ["Crops", " Agricultural", "2. Zero hunger", "Minerals", "Tropical Climate", "Time Factors", "Chemical Phenomena", "Chemistry", " Physical", "Oryza", "04 agricultural and veterinary sciences", "Hydrogen-Ion Concentration", "15. Life on land", "01 natural sciences", "6. Clean water", "Soil", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Food", " Organic", "Fertilizers", "Oxidoreductases", "Methane", "Oxidation-Reduction", "Soil Microbiology", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.2134/jeq2006.0501"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environmental%20Quality", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2134/jeq2006.0501", "name": "item", "description": "10.2134/jeq2006.0501", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2134/jeq2006.0501"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-11-01T00:00:00Z"}}, {"id": "10.2134/jeq2008.0517", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-05-30T16:21:00Z", "type": "Journal Article", "created": "2009-08-25", "title": "Nitrogen, Tillage, And Crop Rotation Effects On Carbon Dioxide And Methane Fluxes From Irrigated Cropping Systems", "description": "Long\uffe2\uff80\uff90term effects of tillage intensity, N fertilization, and crop rotation on carbon dioxide (CO2) and methane (CH4) flux from semiarid irrigated soils are poorly understood. We evaluated effects of: (i) tillage intensity [no\uffe2\uff80\uff90till (NT) and conventional moldboard plow tillage (CT)] in a continuous corn rotation; (ii) N fertilization levels [0\uffe2\uff80\uff93246 kg N ha\uffe2\uff88\uff921 for corn (Zea mays L.); 0 and 56 kg N ha\uffe2\uff88\uff921 for dry bean (Phaseolus vulgaris L.); 0 and 112 kg N ha\uffe2\uff88\uff921 for barley (Hordeum distichon L.)]; and (iii) crop rotation under NT soil management [corn\uffe2\uff80\uff90barley (NT\uffe2\uff80\uff90CB); continuous corn (NT\uffe2\uff80\uff90CC); corn\uffe2\uff80\uff90dry bean (NT\uffe2\uff80\uff90CDb)] on CO2 and CH4 flux from a clay loam soil. Carbon dioxide and CH4 fluxes were monitored one to three times per week using vented nonsteady state closed chambers. No\uffe2\uff80\uff90till reduced (14%) growing season (154 d) cumulative CO2 emissions relative to CT (NT: 2.08 Mg CO2\uffe2\uff80\uff93C ha\uffe2\uff88\uff921; CT: 2.41 Mg CO2\uffe2\uff80\uff93C ha\uffe2\uff88\uff921), while N fertilization had no effect. Significantly lower (18%) growing season CO2 fluxes were found in NT\uffe2\uff80\uff90CDb than NT\uffe2\uff80\uff90CC and NT\uffe2\uff80\uff90CB (11.4, 13.2 and 13.9 kg CO2\uffe2\uff80\uff93C ha\uffe2\uff88\uff921d\uffe2\uff88\uff921 respectively). Growing season CH4 emissions were higher in NT (20.2 g CH4 ha\uffe2\uff88\uff921) than in CT (1.2 g CH4 ha\uffe2\uff88\uff921). Nitrogen fertilization and cropping rotation did not affect CH4 flux. Implementation of NT for 7 yr with no N fertilization was not adequate for restoring the CH4 oxidation capacity of this clay loam soil relative to CT plowed and fertilized soil.
", "keywords": ["2. Zero hunger", "Nitrogen", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Agriculture", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "Fertilizers", "Methane", "Oxidation-Reduction", "6. Clean water"], "contacts": [{"organization": "ALLUVIONE, Francesco, A. D. Halvorson, S. J. Del Grosso,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.2134/jeq2008.0517"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environmental%20Quality", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2134/jeq2008.0517", "name": "item", "description": "10.2134/jeq2008.0517", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2134/jeq2008.0517"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-09-01T00:00:00Z"}}, {"id": "20.500.11850/705672", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:26:40Z", "type": "Journal Article", "created": "2024-11-04", "title": "Geochemical Decoupling of Iron and Zinc during Transformation of Zn-Bearing Ferrihydrite in Reducing Sediments", "description": "Open AccessISSN:0013-936X", "keywords": ["Geologic Sediments", "zinc carbonate", "Iron", "Mossbauer spectroscopy", "X-ray absorption spectroscopy", "mineral transformation; Mossbauer spectroscopy; X-ray absorption spectroscopy; environmental speciation; green rust; zinc sulfide; zinc carbonate", "Ferric Compounds", "Zinc", "Spectroscopy", " Mossbauer", "green rust", "X-Ray Absorption Spectroscopy", "zinc sulfide", "Oxidation-Reduction", "mineral transformation", "environmental speciation"]}, "links": [{"href": "https://pubs.acs.org/doi/pdf/10.1021/acs.est.4c09261"}, {"href": "https://doi.org/20.500.11850/705672"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20%26amp%3B%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "20.500.11850/705672", "name": "item", "description": "20.500.11850/705672", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/20.500.11850/705672"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-11-04T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Oxidation-Reduction&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Oxidation-Reduction&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Oxidation-Reduction&", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Oxidation-Reduction&offset=50", "hreflang": "en-US"}], "numberMatched": 81, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-05-30T17:28:38.512350Z"}