{"type": "FeatureCollection", "features": [{"id": "10.1002/jpln.202000183", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:14:07Z", "type": "Journal Article", "created": "2020-10-09", "title": "Effects of water deficit and nitrogen application on leaf gas exchange, phytohormone signaling, biomass and water use efficiency of oat plants", "description": "Abstract<p>Background: Water and nitrogen (N) are essential resources influencing plant growth and yield. To improve their efficiencies in crop production is challenging because the physiological mechanisms of water and N coupling and their interactive effect on crop water use efficiency (WUE) are not well understood yet.</p><p>Aim: The aim of this study was to investigate the physiological responses and phytohormones signaling in oats in response to soil water status and N supply under fertigation, to explore the mechanisms regulating plant growth and WUE.</p><p>Methods: Oat plants were subjected to the factorial combination of three soil moisture regimes (50, 70, and 90% of soil water holding capacity, SWHC) and three N levels (fertilized with 74, 149, and 298 mg kg\uffe2\uff88\uff921).</p><p>Results: The stomatal conductance (gs) was significantly decreased by soil water deficit, and also by the highest N level, whereas photosynthesis rate (An) was unaffected by neither water nor N. Consequently, intrinsic WUE (WUEint, An/gs) was highest under reduced irrigation and high N fertilization. This effect at stomatal level was affirmed by responses in whole plant WUE (WUEb), which was positively correlated with shoot \uffce\uffb413C. A positive correlation between \uffce\uffb418O and \uffce\uffb413C in shoots further indicated that decreases of gs rather than changes in An contributed to the enhanced WUE.</p><p>Conclusion: Moderate soil water deficit and sufficient N supply is recommended for saving irrigation water and improving WUE on fertigated oat plants without compromising biomass accumulation to any large extent.</p", "keywords": ["2. Zero hunger", "0106 biological sciences", "0301 basic medicine", "HORMONAL CHANGES", "STABLE OXYGEN", "ROOT-GROWTH", "SOLANUM-TUBEROSUM L.", "STOMATAL CONDUCTANCE", "drought stress", "15. Life on land", "ABSCISIC-ACID", "WINTER-WHEAT", "phytohormone", "CARBON-ISOTOPE DISCRIMINATION", "01 natural sciences", "6. Clean water", "nitrogen", "03 medical and health sciences", "DURUM-WHEAT", "delta C-13", "TRANSPIRATION EFFICIENCY"]}, "links": [{"href": "https://doi.org/10.1002/jpln.202000183"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Plant%20Nutrition%20and%20Soil%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/jpln.202000183", "name": "item", "description": "10.1002/jpln.202000183", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/jpln.202000183"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-01T00:00:00Z"}}, {"id": "10.1002/jsfa.5647", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:14:08Z", "type": "Journal Article", "created": "2012-03-19", "title": "Influence Of Rootstock On Drought Response In Young \u2018Gale Gala\u2019 Apple (Malus Domestica Borkh.) Trees", "description": "Abstract<p>BACKGROUND: Drought is a major environmental stress limiting plant growth, productivity, and survival worldwide. Rootstocks are widely used to enhance plants resistance to drought stresses. This study determined influence of rootstock on drought responses in 1\uffe2\uff80\uff90year\uffe2\uff80\uff90old \uffe2\uff80\uff98Gale Gala\uffe2\uff80\uff99 apple trees grafted onto Malus sieversii or M. hupehensis.</p><p>RESULTS: Choice of rootstock resulted in differential response to drought stress. Specifically, M. sieversii caused less drought\uffe2\uff80\uff90induced reduction in relative growth rate, biomass accumulation, leaf area, leaf chlorophyll content, relative water content, photosynthesis rate and maximum chlorophyll fluorescence yield but greater increase in whole\uffe2\uff80\uff90plant water use efficiency compared to M. hupehensis. Secondly, compared with M. hupehensis, M. sieversii caused less drought\uffe2\uff80\uff90induced accumulation of reactive oxygen species but more increase in activities of antioxidant enzymes. In addition, xylem sap abscisic acid concentration was greater in trees grafted onto M. hupehensis than in those grafted onto M. sieversii under drought stress.</p><p>CONCLUSION: \uffe2\uff80\uff98Gale Gala\uffe2\uff80\uff99 trees' response to drought stress was associated with the rootstock's genotype onto which it was grafted. Trees with M. sieversii as rootstock are more drought resistant than trees with M. hupehensis as rootstock, which suggests that M. sieversii can be widely used as rootstock in arid and semi\uffe2\uff80\uff90arid regions. Copyright \uffc2\uffa9 2012 Society of Chemical Industry</p>", "keywords": ["Chlorophyll", "0301 basic medicine", "Plant Roots", "Antioxidants", "Fluorescence", "Trees", "03 medical and health sciences", "Species Specificity", "Stress", " Physiological", "Xylem", "Biomass", "Photosynthesis", "2. Zero hunger", "0402 animal and dairy science", "Water", "04 agricultural and veterinary sciences", "15. Life on land", "Adaptation", " Physiological", "6. Clean water", "Droughts", "Plant Leaves", "Malus", "0401 agriculture", " forestry", " and fisheries", "0405 other agricultural sciences", "Reactive Oxygen Species", "Abscisic Acid"], "contacts": [{"organization": "Binghua Liu, Fengwang Ma, Dong Liang, Yangjun Zou, Liang Cheng,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1002/jsfa.5647"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20the%20Science%20of%20Food%20and%20Agriculture", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/jsfa.5647", "name": "item", "description": "10.1002/jsfa.5647", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/jsfa.5647"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-03-19T00:00:00Z"}}, {"id": "10.1002/smll.201902081", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:14:12Z", "type": "Journal Article", "created": "2019-06-18", "title": "Untangling Cooperative Effects of Pyridinic and Graphitic Nitrogen Sites at Metal\u2010Free N\u2010Doped Carbon Electrocatalysts for the Oxygen Reduction Reaction", "description": "Abstract<p>Metal\uffe2\uff80\uff90free carbon electrodes with well\uffe2\uff80\uff90defined composition and smooth topography are prepared via sputter deposition followed by thermal treatment with inert and reactive gases. X\uffe2\uff80\uff90ray photoelectron spectroscopy (XPS) and Raman spectroscopy show that three carbons of similar N/C content that differ in N\uffe2\uff80\uff90site composition are thus prepared: an electrode consisting of almost exclusively graphitic\uffe2\uff80\uff90N (NG), an electrode with predominantly pyridinic\uffe2\uff80\uff90N (NP), and one with \uffe2\uff89\uff881:1 NG:NP composition. These materials are used as model systems to investigate the activity of N\uffe2\uff80\uff90doped carbons in the oxygen reduction reaction (ORR) using voltammetry. Results show that selectivity toward 4e\uffe2\uff80\uff90reduction of O2 is strongly influenced by the NG/NP site composition, with the material possessing nearly uniform NG/NP composition being the only one yielding a 4e\uffe2\uff80\uff90reduction. Computational studies on model graphene clusters are carried out to elucidate the effect of N\uffe2\uff80\uff90site homogeneity on the reaction pathway. Calculations show that for pure NG\uffe2\uff80\uff90doping or NP\uffe2\uff80\uff90doping of model graphene clusters, adsorption of hydroperoxide and hydroperoxyl radical intermediates, respectively, is weak, thus favoring desorption prior to complete 4e\uffe2\uff80\uff90reduction to hydroxide. Clusters with mixed NG/NP sites display synergistic effects, suggesting that co\uffe2\uff80\uff90presence of these sites improves activity and selectivity by achieving high theoretical reduction potentials while facilitating retention of intermediates.</p>", "keywords": ["Synergistic", "N-doped carbon", "Nanoscience & Materials", "Smart & Sustainable Planet", "Density functional theory", "02 engineering and technology", "540", "Electrocatalysis", "0210 nano-technology", "530", "7. Clean energy", "Oxygen reduction reaction"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/smll.201902081"}, {"href": "https://doi.org/10.1002/smll.201902081"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Small", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/smll.201902081", "name": "item", "description": "10.1002/smll.201902081", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/smll.201902081"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-06-18T00:00:00Z"}}, {"id": "10.1007/s00442-007-0750-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:14:36Z", "type": "Journal Article", "created": "2007-05-09", "title": "Mangrove Growth In New Zealand Estuaries: The Role Of Nutrient Enrichment At Sites With Contrasting Rates Of Sedimentation", "description": "Mangrove forest coverage is increasing in the estuaries of the North Island of New Zealand, causing changes in estuarine ecosystem structure and function. Sedimentation and associated nutrient enrichment have been proposed to be factors leading to increases in mangrove cover, but the relative importance of each of these factors is unknown. We conducted a fertilization study in estuaries with different sedimentation histories in order to determine the role of nutrient enrichment in stimulating mangrove growth and forest development. We expected that if mangroves were nutrient-limited, nutrient enrichment would lead to increases in mangrove growth and forest structure and that nutrient enrichment of trees in our site with low sedimentation would give rise to trees and sediments that converged in terms of functional characteristics on control sites in our high sedimentation site. The effects of fertilizing with nitrogen (N) varied among sites and across the intertidal zone, with enhancements in growth, photosynthetic carbon gain, N resorption prior to leaf senescence and the leaf area index of canopies being significantly greater at the high sedimentation sites than at the low sedimentation sites, and in landward dwarf trees compared to seaward fringing trees. Sediment respiration (CO(2) efflux) was higher at the high sedimentation site than at the low one sedimentation site, but it was not significantly affected by fertilization, suggesting that the high sedimentation site supported greater bacterial mineralization of sediment carbon. Nutrient enrichment of the coastal zone has a role in facilitating the expansion of mangroves in estuaries of the North Island of New Zealand, but this effect is secondary to that of sedimentation, which increases habitat area and stimulates growth. In estuaries with high sediment loads, enrichment with N will cause greater mangrove growth and further changes in ecosystem function.", "keywords": ["nutrient resorption efficiency", "Whangapoua", "0106 biological sciences", "Geologic Sediments", "Nitrogen", "Performance", "soil respiration", "01 natural sciences", "Rhizophora-mangle", "C1", "Oxygen Consumption", "Plant-growth", "Herbivory", "Photosynthesis", "Deposition", "Ecosystem", "580", "photosynthesis", "Avicenna marina", "Ecology", "leaf area index", "Plant Stems", "Phosphorus", "Soil respiration", "Limitation", "15. Life on land", "Carbon", "Plant Leaves", "Leaf area index", "770400 Coastal and Estuarine Environment", "Nutrient resorption efficiency", "Waikopua", "Avicennia", "Seasons", "270402 Plant Physiology", "New Zealand"]}, "links": [{"href": "https://doi.org/10.1007/s00442-007-0750-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-007-0750-y", "name": "item", "description": "10.1007/s00442-007-0750-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-007-0750-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-05-10T00:00:00Z"}}, {"id": "10.1016/j.bioelechem.2021.107937", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:16:13Z", "type": "Journal Article", "created": "2021-08-21", "title": "Nanoscaffold effects on the performance of air-cathodes for microbial fuel cells: Sustainable Fe/N-carbon electrocatalysts for the oxygen reduction reaction under neutral pH conditions", "description": "Nanostructured electrocatalysts for microbial fuel cell air-cathodes were obtained via use of conductive carbon blacks for the synthesis of high performing 3D conductive networks. We used two commercially available nanocarbons, Black Pearls 2000 and multiwalled carbon nanotubes, as conductive scaffolds for the synthesis of nanocomposite electrodes by combining: a hydrothermally carbonized resin, a sacrificial polymeric template, a nitrogenated organic precursor and iron centers. The resulting materials are micro-mesoporous, possess high specific surface area and display N-sites (N/C of 3-5 at%) and Fe-centers (Fe/C\u00a0<\u00a01.5at.%) at the carbon surface as evidenced from characterization methods. Voltammetry studies of oxygen reduction reaction activity were carried out at neutral pH, which is relevant to microbial fuel cell applications, and activity trends are discussed in light of catalyst morphology and composition. Tests of the electrocatalyst using microbial fuel cell devices indicate that optimization of the nanocarbon scaffold for the Pt-free carbon-based electrocatalysts results in maximum power densities that are 25% better than those of Pt/C cathodes, at a fraction of the materials costs. Therefore, the proposed Fe/N-carbon catalysts are promising and sustainable high-performance cathodic materials for microbial fuel cells.", "keywords": ["Bioelectric Energy Sources", "Nanotubes", " Carbon", "Microbial fuel cells", "Electric Conductivity", "7. Clean energy", "01 natural sciences", "Carbon", "Catalysis", "Oxygen reduction reaction", "[PHYS] Physics [physics]", "12. Responsible consumption", "0104 chemical sciences", "Air cathode; Carbon; Electrocatalysis; Microbial fuel cells; Oxygen reduction reaction", "13. Climate action", "[CHIM] Chemical Sciences", "Air cathode", "Electrocatalysis"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/868457/2/1-s2.0-S1567539421002000-main.pdf"}, {"href": "https://doi.org/10.1016/j.bioelechem.2021.107937"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioelectrochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.bioelechem.2021.107937", "name": "item", "description": "10.1016/j.bioelechem.2021.107937", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.bioelechem.2021.107937"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-12-01T00:00:00Z"}}, {"id": "10.1890/10-2076.1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:21:23Z", "type": "Journal Article", "created": "2011-04-29", "title": "No Evidence That Chronic Nitrogen Additions Increase Photosynthesis In Mature Sugar Maple Forests", "description": "Atmospheric nitrogen (N) deposition can increase forest growth. Because N deposition commonly increases foliar N concentrations, it is thought that this increase in forest growth is a consequence of enhanced leaf-level photosynthesis. However, tests of this mechanism have been infrequent, and increases in photosynthesis have not been consistently observed in mature forests subject to chronic N deposition. In four mature northern hardwood forests in the north-central United States, chronic N additions (30 kg N ha(-1) yr(-1) as NaNO3 for 14 years) have increased aboveground growth but have not affected canopy leaf biomass or leaf area index. In order to understand the mechanism behind the increases in growth, we hypothesized that the NO3(-) additions increased foliar N concentrations and leaf-level photosynthesis in the dominant species in these forests (sugar maple, Acer saccharum). The NO3(-) additions significantly increased foliar N. However, there was no significant difference between the ambient and +NO3(-) treatments in two seasons (2006-2007) of instantaneous measurements of photosynthesis from either canopy towers or excised branches. In measurements on excised branches, photosynthetic nitrogen use efficiency (micromol CO2 s(-1) g(-1) N) was significantly decreased (-13%) by NO3(-) additions. Furthermore, we found no consistent NO3(-) effect across all sites in either current foliage or leaf litter collected annually throughout the study (1993-2007) and analyzed for delta 13C and delta 18O, isotopes that can be used together to integrate changes in photosynthesis over time. We observed a small but significant NO3(-) effect on the average area and mass of individual leaves from the excised branches, but these differences varied by site and were countered by changes in leaf number. These photosynthesis and leaf area data together suggest that NO3(-) additions have not stimulated photosynthesis. There is no evidence that nutrient deficiencies have developed at these sites, so unlike other studies of photosynthesis in N-saturated forests, we cannot attribute the lack of a stimulation of photosynthesis to nutrient limitations. Rather than increases in C assimilation, the observed increases in aboveground growth at our study sites are more likely due to shifts in C allocation.", "keywords": ["0106 biological sciences", "Carbon Isotopes", "Michigan", "Nitrates", "Time Factors", "Nitrogen", "Acer", "04 agricultural and veterinary sciences", "Oxygen Isotopes", "15. Life on land", "01 natural sciences", "Carbon", "Trees", "Oxygen", "Plant Leaves", "0401 agriculture", " forestry", " and fisheries", "Photosynthesis", "Fertilizers"]}, "links": [{"href": "https://doi.org/10.1890/10-2076.1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecological%20Applications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1890/10-2076.1", "name": "item", "description": "10.1890/10-2076.1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1890/10-2076.1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-10-01T00:00:00Z"}}, {"id": "10.1007/s42832-022-0157-z", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-03T16:15:32Z", "type": "Journal Article", "created": "2022-12-29", "title": "Trade-off between microbial carbon use efficiency and specific nutrient-acquiring extracellular enzyme activities under reduced oxygen", "description": "\u2022 Reduced oxygen increased microbial metabolic quotient (qCO2).<br/><br/>\u2022 Reduced oxygen enhanced microbial specific C-, N- and P-acquiring enzyme activity.<br/><br/>\u2022 Reduced oxygen increased microbial C relative to N and P limitation. \u2022 Reduced oxygen increased microbial N relative to P limitation. \u2022 Specific enzyme activity was positively related to qCO2 under reduced oxygen.<br/><br/>Mangroves are one of the most ecologically sensitive ecosystems to global climate change, which have cascading impacts on soil carbon (C), nitrogen (N) and phosphorus (P) cycling. Moreover, mangroves are experiencing increasing N and P loadings and reduced oxygen availability due to intensified climate change and human activities. However, both direct and interactive effects of these perturbations on microbially mediated soil C, N and P cycling are poorly understood. Here, we simultaneously investigated the effects of N and P loadings and reduced oxygen on microbial biomass, microbial respiration, and extracellular enzyme activities (EEAs) in mangrove soils. We calculated the microbial metabolic quotient (qCO2), which is regarded as a useful inverse metric of microbial C use efficiency (CUE). Our results show that reduced oxygen significantly increases both qCO2 and microbial specific EEAs (enzyme activity per unit of microbial biomass) for C-, N- and P-acquisition regardless of N or P loadings. Furthermore, we found that qCO2 positively correlated with microbial specific EEAs under reduced oxygen, whereas no clear relationship was detected under ambient oxygen. These results suggest that reduced oxygen increases microbial specific EEAs at the expense of increasing microbial respiration per unit biomass, indicating higher energy cost per unit enzyme production.", "keywords": ["mangrove", "nutrient acquisition", "microbial respiration", "nutrient addition", "13. Climate action", "extracellular enzyme", "0401 agriculture", " forestry", " and fisheries", "reduced oxygen", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1007/s42832-022-0157-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s42832-022-0157-z", "name": "item", "description": "10.1007/s42832-022-0157-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s42832-022-0157-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-12-29T00:00:00Z"}}, {"id": "10.5061/dryad.c2fqz61cf", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:23:13Z", "type": "Dataset", "title": "Oxygen availability regulates the quality of soil dissolved organic matter by mediating microbial metabolism and iron oxidation", "description": "Dissolved organic matter (DOM) plays a vital role in biogeochemical  processes and in determining the responses of soil organic matter (SOM) to  global change. Although the quantity of soil DOM has been inventoried  across diverse spatio-temporal scales, the underlying mechanisms  accounting for variability in DOM dynamics remain unclear, especially in  upland ecosystems. Here, a gradient of SOM storage across twelve croplands  in northeast China was used to understand links between DOM dynamics,  microbial metabolism, and abiotic conditions. We assessed the composition,  biodegradability and key biodegradable components of DOM. In addition, SOM  and mineral-associated organic matter (MAOM) composition, soil enzyme  activities, oxygen availability, soil texture, iron (Fe), Fe-bound organic  matter and nutrient concentrations were quantified to clarify the drivers  of DOM quality (composition and biodegradability). The proportion of  biodegradable DOM increased exponentially with decreasing initial DOM  concentration due to larger fractions of depolymerized DOM that was rich  in small-molecular phenols and proteinaceous components. Unexpectedly, the  composition of DOM was decoupled from that of SOM or MAOM, but  significantly related to enzymatic properties. These results indicate that  microbial metabolism exhibited a dominant role in DOM generation. As DOM  concentration declined, increased soil oxygen availability regulated DOM  composition and enhanced its biodegradability mainly through mediating  microbial metabolism and Fe oxidation. The oxygen-induced oxidation of  Fe(II) to Fe(III) removed complex DOM compounds with large molecular  weight. Moreover, increased oxygen availability stimulated  oxidase-catalyzed depolymerization of aromatic substances, and promoted  production of protein-like DOM components due to lower enzymatic C/N  acquisition ratio. As global changes in temperature and moisture will have  large impacts on soil oxygen availability, the role of oxygen in  regulating DOM dynamics highlights the importance of integrating soil  oxygen supply with microbial metabolism and Fe redox status to improve  model predictions of soil carbon under climate change.", "keywords": ["2. Zero hunger", "soil organic carbon", "iron cycling", "13. Climate action", "FOS: Agricultural sciences", "Biodegradation", "oxygen availability", "enzymatic stoichiometry", "15. Life on land", "dissolved organic matter", "6. Clean water"], "contacts": [{"organization": "Li, Ye, Chen, Zengming, Chen, Ji, Castellano, Michael J., Ye, Chenglong, Zhang, Nan, Miao, Yuncai, Zheng, Huijie, Li, Junjie, Ding, Weixin,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.c2fqz61cf"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.c2fqz61cf", "name": "item", "description": "10.5061/dryad.c2fqz61cf", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.c2fqz61cf"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-10-23T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2006.03.038", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:16:22Z", "type": "Journal Article", "created": "2006-05-09", "title": "Decomposition Of Heavy Metal Contaminated Nettles (Urtica Dioica L.) In Soils Subjected To Heavy Metal Pollution By River Sediments", "description": "Two incubation experiments were conducted to evaluate differences in the microbial use of non-contaminated and heavy metal contaminated nettle (Urtica dioica L.) shoot residues in three soils subjected to heavy metal pollution (Zn, Pb, Cu, and Cd) by river sediments. The microbial use of shoot residues was monitored by changes in microbial biomass C, biomass N, biomass P, ergosterol, N mineralisation, CO(2) production and O(2) consumption rates. Microbial biomass C, N, and P were estimated by fumigation extraction. In the non-amended soils, the mean microbial biomass C to soil organic C ratio decreased from 2.3% in the low metal soil to 1.1% in the high metal soils. In the 42-d incubation experiment, the addition of 2% nettle residues resulted in markedly increased contents of microbial biomass P (+240%), biomass C (+270%), biomass N (+310%), and ergosterol (+360%). The relative increase in the four microbial properties was similar for the three soils and did not show any clear heavy metal effect. The contents of microbial biomass C, N and P and ergosterol contents declined approximately by 30% during the incubation as in the non-amended soils. The ratios microbial biomass C to N, microbial biomass C to P, and ergosterol to microbial biomass C remained constant at 5.2, 26, and 0.5%, respectively. In the 6-d incubation experiment, the respiratory quotient CO(2)/O(2) increased from 0.74 in the low metal soil to 1.58 in the high metal soil in the non-amended soils. In the treatments amended with 4% nettle residues, the respiratory quotient was constant at 1.13, without any effects of the three soils or the two nettle treatments. Contaminated nettle residues led generally to significantly lower N mineralisation, CO(2) production and O(2) consumption rates than non-contaminated nettle residues. However, the absolute differences were small.", "keywords": ["2. Zero hunger", "Geologic Sediments", "Minerals", "Time Factors", "Nitrogen", "Urtica dioica", "04 agricultural and veterinary sciences", "Carbon Dioxide", "01 natural sciences", "6. Clean water", "12. Responsible consumption", "Oxygen", "Rivers", "13. Climate action", "Ergosterol", "Metals", " Heavy", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Soil Microbiology", "Environmental Monitoring", "0105 earth and related environmental sciences"], "contacts": [{"organization": "Rainer Georg Joergensen, Khalid Saifullah Khan,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2006.03.038"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2006.03.038", "name": "item", "description": "10.1016/j.chemosphere.2006.03.038", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2006.03.038"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-11-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2024.143131", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:16:23Z", "type": "Journal Article", "created": "2024-08-19", "title": "Photoaging of polystyrene-based microplastics amplifies inflammatory response in macrophages", "description": "The continuous release of municipal and industrial products into the environment poses a growing concern for public health. Among environmental pollutants, polystyrene (PS) stands out as a primary constituent of environmental plastic waste, given its widespread use and high production rates owing to its durability and user-friendly properties. The detection of polystyrene microparticles (PS-MPs) in various living organisms has been well-documented, posing a serious threat due to their potential passage into the human ecosystem. In this manuscript, we aimed to study the toxicological effects of low concentrations of pristine and photoaged PS-MPs in a murine macrophage cell line. To this purpose, PS-MPs were photoaged by indoor exposure to visible light to simulate environmental weathering due to solar irradiation (PS-MPs3h). Physical characterization revealed that the irradiation treatment results in particle degradation and the possible release of nanoparticles. Monocultures of the RAW264.7\u00a0cell line were then exposed to PS-MPs and PS-MPs3h at concentrations comparable to experimental measurements from biological samples, to assess cytotoxicity, intracellular oxidative stress, primary genotoxicity, and inflammatory effects. Significant toxicity-related outcomes were observed in cells treated with both pristine PS-MPs and PS-MPs3h even at low concentrations (0,10\u00a0\u03bcg/ml and 1\u00a0\u03bcg/ml). PS-MPs3h exhibited greater adverse effects compared to PS-MPs, including reduced cell viability, increased ROS production, elevated DNA damage, and upregulation of IL-6 and NOS2 gene expression. Therefore, we can conclude that changes induced by environmental aging in the physicochemical composition of PS microplastics play a crucial role in the adverse health outcomes associated with microplastic exposure.", "keywords": ["Inflammation", "Mice", "Oxidative Stress", "RAW 264.7 Cells", "microplastics", " polystyrene", " macrophages", "Cell Survival", "Microplastics", "Macrophages", "Polystyrenes", "Animals", "Environmental Pollutants", "Reactive Oxygen Species", "DNA Damage"]}, "links": [{"href": "https://iris.cnr.it/bitstream/20.500.14243/493702/1/Aloi%20et%20al%20Chemospere%202024.pdf"}, {"href": "https://doi.org/10.1016/j.chemosphere.2024.143131"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2024.143131", "name": "item", "description": "10.1016/j.chemosphere.2024.143131", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2024.143131"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "10.1016/j.jhazmat.2019.05.059", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:17:16Z", "type": "Journal Article", "created": "2019-05-25", "title": "Release of tetrabromobisphenol A (TBBPA)-derived non-extractable residues in oxic soil and the effects of the TBBPA-degrading bacterium Ochrobactrum sp. strain T", "description": "Tetrabromobisphenol A (TBBPA) forms large amount of non-extractable residues (NER) in soil. However, the stability of TBBPA-NER with TBBPA degrader in soil had not been determined. In this study, a 14C-tracer was used to follow the release and alteration of TBBPA-derived NER during 214 days of incubation in oxic soil and in the presence or absence of the TBBPA-degrading bacterium Ochrobatrum sp. strain T. In the absence of strain T, 1.89% of the TBBPA and its metabolites were slowly released from the NER, with TBBPA as the predominant component, accompanied by 2.47% mineralization by day 91 of the incubation. The addition of active cells strongly stimulated the release and mineralization of NER (10.93% and 4.64%, respectively), reduced the amount of the ester-linked fraction, and transformed NER from humin-bound to HA-bound forms. Cells added to the soil in sterilized form had much smaller effects on the stability and internal alterations of NER. Among the ester-linked compounds, 47.4% consisted of TBBPA; two metabolites were so detected. These results provide new information on the stability and internal transformation of TBBPA-NER in soil during its long-term incubation and underlines the importance of microbial TBBPA degraders in determining the composition of NER in soil.", "keywords": ["Bacteria", "Polybrominated Biphenyls", "0211 other engineering and technologies", "02 engineering and technology", "Ochrobactrum", "01 natural sciences", "6. Clean water", "Oxygen", "Soil", "Biodegradation", " Environmental", "Soil Pollutants", "Humic Substances", "Soil Microbiology", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.jhazmat.2019.05.059"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Hazardous%20Materials", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jhazmat.2019.05.059", "name": "item", "description": "10.1016/j.jhazmat.2019.05.059", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jhazmat.2019.05.059"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-10-01T00:00:00Z"}}, {"id": "10.1016/j.proci.2018.05.125", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:17:23Z", "type": "Journal Article", "created": "2018-06-21", "title": "Upward-and-downward spread of smoldering peat fire", "description": "Abstract   Smoldering is the dominant combustion process in peat fire, releasing a large amount of carbon and smoke into the atmosphere. The spread of smoldering in peatland is a multi-dimensional process, which is slow, low-temperature, persistent, and difficult to detect. In this work, we investigate the upward spread of peat fire from the underground to the surface after forced ignition which is a relevant configuration but rarely studied. In the experiment, ignition is not possible if the igniter is deeper than 15\u202fcm below the free surface, regardless of moisture content or density. Once ignited, the 1st-stage upward fire spread is initiated towards the free surface (opposed smoldering) with a peak temperature of 300\u202f\u00b0C, leaving behind a char structure that does not collapse. Then, a 2nd-stage downward spread (forward smoldering) is activated with a peak temperature of 600\u202f\u00b0C and regression of free surface. The upward spread is faster than the downward spread. The rates of both upward and downward spread decrease as the peat density or depth is increased. These experimental observations are successfully captured by a 1D computational model of heat and mass transfer with 5-step kinetics. Modelling results further suggest that (1) the oxygen diffusion controls the entire upward-to-downward spread of peat fire, (2) the oxidation of peat sustains the 1st-stage upward spread, and (3) the oxidation of char sustains the 2nd-stage downward spread. This is the first study investigating the upward spread of peat fire, which helps understand the persistence of peat fire and guide the fire prevention and suppression strategies.", "keywords": ["570", "Technology", "Engineering", " Chemical", "Energy & Fuels", "0904 Chemical Engineering", "Density", "Chemical", "02 engineering and technology", "MOISTURE", "0902 Automotive Engineering", "530", "Modelling", "OXYGEN", "0201 civil engineering", "COMBUSTION", "Engineering", "0204 chemical engineering", "Science & Technology", "Critical depth", "ROLES", "Opposed and forward smoldering", "BURN", "Mechanical", "Engineering", " Mechanical", "SOIL", "DENSITY", "Physical Sciences", "DEPTH", "Thermodynamics", "Wildland fire", "0913 Mechanical Engineering"]}, "links": [{"href": "https://doi.org/10.1016/j.proci.2018.05.125"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20Combustion%20Institute", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.proci.2018.05.125", "name": "item", "description": "10.1016/j.proci.2018.05.125", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.proci.2018.05.125"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-01-01T00:00:00Z"}}, {"id": "10.1016/j.scitotenv.2006.08.033", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:17:26Z", "type": "Journal Article", "created": "2006-10-05", "title": "Changes In Lead Availability Affect Bacterial Community Structure But Not Basal Respiration In A Microcosm Study With Forest Soils", "description": "This study investigates the effects of Pb during time on the bacterial communities of forest soils using water-extractable Pb concentrations in the soil solution as predictors of Pb bioavailability. In a microcosm experiment we applied increasing concentrations of Pb(NO(3))(2) solutions (0.5, 2, 8, 32 mM) to 5 forest soils of pH<5 and to a calcareous soil of pH>6.5. Sampling of the microcosms was performed after 3, 30 and 90 days of incubation. Community analysis included basal respiration rates and changes in the structure of the bacterial communities through T-RFLP fingerprinting. We also investigated functional stability in terms of resistance, expressed as the effects on basal respiration after 3 days of incubation, and of resilience, expressed as the recovery of bacterial community structure and of respiration rates after 90 days of incubation. Water-extractable Pb increased with time in most of the soils, in parallel with an increase of water-extractable dissolved organic carbon (DOC). The increased concentrations slightly affected bacterial community structure, although OTU (operational taxonomic unit) richness was not significantly reduced with Pb concentrations in any of the soils. The highest Pb treatment (32 mM) caused significant effects on basal respiration in some of the acidic soils, but no clear trend was observed in relation to increased Pb bioavailability with time. Resistance to Pb additions was evident in five of the six soils, but only two showed resilience after 90 days. This is the first study showing the effects of time on Pb bioavailability in soils and on the resulting reactions of the soil microbial communities.", "keywords": ["DNA", " Bacterial", "Nitrates", "04 agricultural and veterinary sciences", "15. Life on land", "Models", " Biological", "6. Clean water", "Trees", "Oxygen", "RNA", " Bacterial", "Soil", "Lead", "RNA", " Ribosomal", " 16S", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Ecosystem", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1016/j.scitotenv.2006.08.033"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.scitotenv.2006.08.033", "name": "item", "description": "10.1016/j.scitotenv.2006.08.033", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.scitotenv.2006.08.033"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-12-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2023.109259", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:17:50Z", "type": "Journal Article", "created": "2023-12-01", "title": "A pulse of simulated root exudation alters the composition and temporal dynamics of microbial metabolites in its immediate vicinity", "description": "Root exudation increases the concentration of readily available carbon (C) compounds in its immediate environment. This creates \u2018hotspots\u2019 of microbial activity characterized by accelerated soil organic matter turnover with direct implications for nutrient availability for plants. However, our knowledge of the microbial metabolic processes occurring in the immediate vicinity of roots during and after a root exudation event is still limited.<br/><br/>Using reverse microdialysis, we simulated root exudation by releasing a13C-labelled mix of low-molecular-weight organic C compounds at mm-sized locations in undisturbed soil. Combined with stable isotope tracing, we investigated the fine-scale temporal and spatial response of microbial metabolism, soil chemistry, and traced microbial respiration and uptake of exuded compounds.<br/><br/>Our results show that a 9-h simulated root exudation pulse leads to i) a large local respiration event and ii) alteration of the temporal dynamics of soil metabolites over the following 12\u202fday\u202fat the exudation spot. Notably, we observed a threefold increase in ammonium concentrations at 12\u202fh and increased nitrate concentrations five days after the pulse. Moreover, various short-chain fatty acids (acetate, propionate, formate) increased over the following days, indicating altered microbial metabolic pathways and activity. Phospholipid and neutral lipid fatty acids (PLFAs, NLFAs) of all major microbial groups were significantly 13C-enriched within a 5\u202fmm radius around the microdialysis probes, but not beyond. The highest relative 13C enrichment was observed in fungal NLFAs, indicating that a significant proportion of the exuded compounds had been incorporated into fungal storage compounds.<br/><br/>Our findings indicate that the punctual release of low-molecular-weight organic C compounds into intact soil significantly changes microbial metabolism and activity in its immediate surroundings, enhancing mineralization of native organic nitrogen. This highlights the versatility of microbial metabolic pathways in response to rapidly changing C availability and their effectiveness in increasing nutrient availability near plant roots.", "keywords": ["Oxygen depletion", "2. Zero hunger", "570", "106022 Mikrobiologie", "Root exudation", "short-chain fatty acids", "Reverse microdialysis", "reverse microdialysis", "[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study", "15. Life on land", "root exudation", "6. Clean water", "Short-chain fatty acids", "Sugar metabolism", "106026 \u00d6kosystemforschung", "thizosphere priming effect", "crabtree effect", "sugar metabolism", "106022 Microbiology", "[SDV.SA.SDS] Life Sciences [q-bio]/Agricultural sciences/Soil study", "106026 Ecosystem research", "Rhizosphere priming effect"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2023.109259"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2023.109259", "name": "item", "description": "10.1016/j.soilbio.2023.109259", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2023.109259"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-02-01T00:00:00Z"}}, {"id": "10.1038/s41396-022-01211-0", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:18:37Z", "type": "Journal Article", "created": "2022-03-22", "title": "Identification of active gaseous alkane degraders at natural gas seeps", "description": "Abstract                <p>Natural gas seeps release significant amounts of methane and other gases including ethane and propane contributing to global climate change. In this study, bacterial actively\uffc2\uffa0consuming short-chain alkanes were identified by cultivation, whole-genome sequencing, and stable-isotope probing (SIP)-metagenomics using 13C-propane and 13C-ethane from two different natural gas seeps, Pipe Creek and Andreiasu Everlasting Fire. Nearly 100 metagenome-assembled genomes (MAGs) (completeness 70\uffe2\uff80\uff9399%) were recovered from both sites. Among these, 16 MAGs had genes encoding the soluble di-iron monooxygenase (SDIMO). The MAGs were affiliated to Actinobacteria (two MAGs), Alphaproteobacteria (ten MAGs), and Gammaproteobacteria (four MAGs). Additionally, three gaseous-alkane degraders were isolated in pure culture, all of which could grow on ethane, propane, and butane and possessed SDIMO-related genes. Two Rhodoblastus strains (PC2 and PC3) were from Pipe Creek and a Mycolicibacterium strain (ANDR5) from Andreiasu. Strains PC2 and PC3 encoded putative butane monooxygenases (MOs) and strain ANDR5 contained a propane MO. Mycolicibacterium strain ANDR5 and MAG19a, highly abundant in incubations with 13C-ethane, share an amino acid identity (AAI) of 99.3%. We show using a combination of enrichment and isolation, and cultivation-independent techniques, that these natural gas seeps contain a diverse community of active bacteria oxidising\uffc2\uffa0gaseous-alkanes, which play an important role in biogeochemical cycling of natural gas.</p>", "keywords": ["0301 basic medicine", "570", "Ethane", "0303 health sciences", "Bacteria", "Natural Gas", "Article", "Mixed Function Oxygenases", "Propane", "03 medical and health sciences", "13. Climate action", "Alkanes", "Butanes", "Gases", "Phylogeny"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/84325/1/s41396_022_01211_0.pdf"}, {"href": "https://www.nature.com/articles/s41396-022-01211-0.pdf"}, {"href": "https://doi.org/10.1038/s41396-022-01211-0"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20ISME%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41396-022-01211-0", "name": "item", "description": "10.1038/s41396-022-01211-0", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41396-022-01211-0"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-03-22T00:00:00Z"}}, {"id": "10.1016/j.watres.2022.118628", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:18:08Z", "type": "Journal Article", "created": "2022-05-17", "title": "Investigation of hydrodynamic cavitation induced reactive oxygen species production in microchannels via chemiluminescent luminol oxidation reactions", "description": "Hydrodynamic cavitation was evaluated for its reactive oxygen species production in several convergent-divergent microchannel at the transition from micro to milli scale. Channel widths and heights were systematically varied to study the influence of geometrical parameters at the transitory scale. A photomultiplier tube was used for time-resolved photon detection and monitoring of the chemiluminescent luminol oxidation reactions, allowing for a contactless and in situ quantization of reactive oxygen species production in the channels. The radical production rates at various flow parameters were evaluated, showing an optimal yield per flow rate exists in the observed geometrical range. While cavitation cloud shedding was the prevailing regime in this type of channels, the photon arrival time analysis allowed for an investigation of the cavitation structure dynamics and their contribution to the chemical yield, revealing that radical production is not linked to the synchronous cavitation cloud collapse events. Instead, individual bubble collapses occurring throughout the cloud formation were recognized to be the source of the reactive oxygen species.", "keywords": ["convergent-divergent channels", "kemoluminiscenca", "free radicals", "Free radicals", "Photon counting", "microscale cavitation", "kavitacija", "info:eu-repo/classification/udc/532.528", "0404 agricultural biotechnology", "Microscale cavitation", "cavitation cloud shedding", "kavitacija", " prosti radikali", " kemoluminiscenca", "photon counting", "Convergent-divergent channels", "[SPI.FLUID] Engineering Sciences [physics]/Reactive fluid environment", "04 agricultural and veterinary sciences", "Luminol chemiluminescence", "Cavitation cloud shedding", "info:eu-repo/classification/udc/532", "Luminescent Measurements", "Hydrodynamics", "luminol chemiluminescence", "cavitation cloud shedding", " free radicals", " photon counting", " microscale cavitation", " luminol chemiluminescence", " convergent-divergent channels", "Luminol", "Reactive Oxygen Species", "0405 other agricultural sciences", "prosti radikali", "Oxidation-Reduction"]}, "links": [{"href": "https://doi.org/10.1016/j.watres.2022.118628"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Water%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.watres.2022.118628", "name": "item", "description": "10.1016/j.watres.2022.118628", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.watres.2022.118628"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-07-01T00:00:00Z"}}, {"id": "10.1021/es061765v", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:18:17Z", "type": "Journal Article", "created": "2007-03-29", "title": "Interactions Between Elevated Co2 And Warming Could Amplify Doc Exports From Peatland Catchments", "description": "Peatlands export more dissolved organic carbon (DOC) than any other biome, contributing 20% of all terrestrial DOC exported to the oceans. Both warming and elevated atmospheric CO2 (eCO2) can increase DOC exports, but their interaction is poorly understood. Peat monoliths were, therefore, exposed to eCO2, warming and eCO2 + warming (combined). The combined treatment produced a synergistic (i.e., significant interaction) rise in DOC concentrations available for export (119% higher than the control, interaction P < 0.05) and enriched this pool with phenolic compounds (284%). We attribute this to increased plant inputs, coupled with impaired microbial degradation induced by competition with the vegetation for nutrients and inhibitory phenolics. Root biomass showed a synergistic increase (407% relative to the control, P < 0.1 only), while exudate inputs increased additively. Phenol oxidase was suppressed synergistically (58%, interaction P < 0.1 only) and beta-glucosidase (27%) additively, while microbial nutritional stress increased (51%) additively. Such results suggest intensified carbon exports from peatlands, with potentially widespread ramifications for aquatic processes in the receiving waters.", "keywords": ["Nitrogen", "litter decomposition", "Bryophyta", "01 natural sciences", "sphagnum", "soil", "Magnoliopsida", "Soil", "Phenols", "0105 earth and related environmental sciences", "Monophenol Monooxygenase", "beta-Glucosidase", "Temperature", "temperature", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "dissolved organic carbon", "matter", "Carbon", "Phosphoric Monoester Hydrolases", "6. Clean water", "enzyme", "bog", "13. Climate action", "community", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://doi.org/10.1021/es061765v"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20%26amp%3B%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1021/es061765v", "name": "item", "description": "10.1021/es061765v", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1021/es061765v"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-03-29T00:00:00Z"}}, {"id": "10.3390/polym9090415", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:22:40Z", "type": "Journal Article", "created": "2017-09-05", "title": "The Effect of Moisture on Cellulose Nanocrystals Intended as a High Gas Barrier Coating on Flexible Packaging Materials", "description": "<p>Cellulose nanocrystals (CNCs) exhibit outstanding gas barrier properties, which supports their use as a biobased and biodegradable barrier coating on flexible food packaging materials. As highly hydrophilic biopolymers, however, CNCs have a strong sensitivity to water that can be detrimental to applications with fresh foods and in moist conditions due to the loss of barrier properties. In this work, the oxygen and water vapor permeability of polyethylene terephthalate (PET) films coated with CNCs obtained from cotton linters were measured at varying levels of relative humidity, both in adsorption and desorption, and from these data, the diffusion and solubility coefficients were estimated. Therefore, the characterization of CNCs was aimed at understanding the fundamentals of the water-CNCs interaction and proposing counteractions. The CNCs\uffe2\uff80\uff99 moisture absorption and desorption isotherms at 25 \uffc2\uffb0C were collected in the range of relative humidity 0\uffe2\uff80\uff9397% using different techniques and analyzed through GAB (Guggenheim-Anderson-de Boer) and Oswin models. The effects of moisture on the water status, following the freezable water index, and on the crystal structure of CNCs were investigated by Differential Scanning Calorimetry and by X-ray Powder Diffraction, respectively. These findings point to the opportunity of coupling CNCs with hydrophobic layers in order to boost their capabilities as barrier packaging materials.</p>", "keywords": ["cellulose nanocrystals; flexible packaging materials; oxygen barrier; moisture effects", "cellulose nanocrystals; flexible packaging materials; moisture effects; oxygen barrier; chemistry (all); polymers and plastics", "02 engineering and technology", "0210 nano-technology", "Article"]}, "links": [{"href": "http://www.mdpi.com/2073-4360/9/9/415/pdf"}, {"href": "https://air.unimi.it/bitstream/2434/557567/2/polymers_09_00415.pdf"}, {"href": "https://doi.org/10.3390/polym9090415"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Polymers", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/polym9090415", "name": "item", "description": "10.3390/polym9090415", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/polym9090415"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-09-05T00:00:00Z"}}, {"id": "10.1029/2010jg001494", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:18:29Z", "type": "Journal Article", "created": "2011-02-03", "title": "Nitrous Oxide Emissions And Isotopic Composition In Urban And Agricultural Systems In Southern California", "description": "[1]\u00a0Nitrous oxide (N2O) is a powerful greenhouse gas increasing in atmospheric mixing ratio and linked to increasing amounts of reactive N in the environment, particularly fertilizer use in agriculture. The consequences of urbanization of agricultural land for global and regional N2O emissions are unclear, due to high spatial and temporal variability of fluxes from different ecosystems and relatively few studies of urban ecosystems. We measured fluxes and the stable isotope composition (\u03b415N and \u03b418O) of N2O over 1 year in urban (ornamental lawns and athletic fields) and agricultural (corn and vegetable fields) ecosystems near Los Angeles, California, United States. We found that urban landscapes (lawns and athletic fields) have annual N2O fluxes equal to or greater than agricultural fields. Fertilization rates of urban landscapes were equal to or greater than agricultural fields, with comparable N2O emissions factors. \u03b415N and \u03b418O of N2O varied widely in all ecosystems, and were not consistent with ecosystem type, season, soil moisture, or temperature. There was, however, a consistent response of \u03b415N-N2O to pulses of N2O emission following fertilization, with an initial depletion in \u03b415N relative to prefertilization values, then gradual enrichment to background values within about 1 week. Preliminary scaling calculations indicated that N2O emissions from urban landscapes are approximately equal to or greater than agricultural emissions in urbanized areas of southern California, which further implies that current estimates of regional N2O emissions (based on agricultural land area) may be too low.", "keywords": ["2. Zero hunger", "long-term", "denitrification", "variability", "methane", "cycle (with supplement)", "04 agricultural and veterinary sciences", "15. Life on land", "carbon-dioxide", "7. Clean energy", "01 natural sciences", "nitrification", "13. Climate action", "11. Sustainability", "global n2o budget", "soil-moisture", "0401 agriculture", " forestry", " and fisheries", "oxygen-exchange", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://escholarship.org/content/qt7q9586fd/qt7q9586fd.pdf"}, {"href": "https://doi.org/10.1029/2010jg001494"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Geophysical%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2010jg001494", "name": "item", "description": "10.1029/2010jg001494", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2010jg001494"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-02-04T00:00:00Z"}}, {"id": "10.1038/417279a", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:18:34Z", "type": "Journal Article", "created": "2002-07-26", "title": "Nonlinear Grassland Responses To Past And Future Atmospheric Co2", "description": "Carbon sequestration in soil organic matter may moderate increases in atmospheric CO(2) concentrations (C(a)) as C(a) increases to more than 500 micromol mol(-1) this century from interglacial levels of less than 200 micromol mol(-1) (refs 1 6). However, such carbon storage depends on feedbacks between plant responses to C(a) and nutrient availability. Here we present evidence that soil carbon storage and nitrogen cycling in a grassland ecosystem are much more responsive to increases in past C(a) than to those forecast for the coming century. Along a continuous gradient of 200 to 550 micromol mol(-1) (refs 9, 10), increased C(a) promoted higher photosynthetic rates and altered plant tissue chemistry. Soil carbon was lost at subambient C(a), but was unchanged at elevated C(a) where losses of old soil carbon offset increases in new carbon. Along the experimental gradient in C(a) there was a nonlinear, threefold decrease in nitrogen availability. The differences in sensitivity of carbon storage to historical and future C(a) and increased nutrient limitation suggest that the passive sequestration of carbon in soils may have been important historically, but the ability of soils to continue as sinks is limited.", "keywords": ["2. Zero hunger", "Atmosphere", "Nitrogen", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "Poaceae", "01 natural sciences", "Carbon", "Oxygen", "Soil", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Photosynthesis", "Ecosystem", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1038/417279a"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/417279a", "name": "item", "description": "10.1038/417279a", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/417279a"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2002-05-01T00:00:00Z"}}, {"id": "10.1038/s41396-018-0072-6", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:18:37Z", "type": "Journal Article", "created": "2018-02-14", "title": "Microbial cycling of isoprene, the most abundantly produced biological volatile organic compound on Earth", "description": "Abstract<p>Isoprene (2-methyl-1,3-butadiene), the most abundantly produced biogenic volatile organic compound (BVOC) on Earth, is highly reactive and can have diverse and often detrimental atmospheric effects, which impact on climate and health. Most isoprene is produced by terrestrial plants, but (micro)algal production is important in aquatic environments, and the relative bacterial contribution remains unknown. Soils are a sink for isoprene, and bacteria that can use isoprene as a carbon and energy source have been cultivated and also identified using cultivation-independent methods from soils, leaves and coastal/marine environments. Bacteria belonging to the Actinobacteria are most frequently isolated and identified, and Proteobacteria have also been shown to degrade isoprene. In the freshwater-sediment isolate, Rhodococcus strain AD45, initial oxidation of isoprene to 1,2-epoxy-isoprene is catalyzed by a multicomponent isoprene monooxygenase encoded by the genes isoABCDEF. The resultant epoxide is converted to a glutathione conjugate by a glutathione S-transferase encoded by isoI, and further degraded by enzymes encoded by isoGHJ. Genome sequence analysis of actinobacterial isolates belonging to the genera Rhodococcus, Mycobacterium and Gordonia has revealed that isoABCDEF and isoGHIJ are linked in an operon, either on a plasmid or the chromosome. In Rhodococcus strain AD45 both isoprene and epoxy-isoprene induce a high level of transcription of 22 contiguous genes, including isoABCDEF and isoGHIJ. Sequence analysis of the isoA gene, encoding the large subunit of the oxygenase component of isoprene monooxygenase, from isolates has facilitated the development of PCR primers that are proving valuable in investigating the ecology of uncultivated isoprene-degrading bacteria.</p>", "keywords": ["2. Zero hunger", "0301 basic medicine", "570", "0303 health sciences", "550", "QH301 Biology", "Review Article", "Plants", "15. Life on land", "6. Clean water", "Mixed Function Oxygenases", "Actinobacteria", "Soil", "03 medical and health sciences", "Hemiterpenes", "13. Climate action", "Pentanes", "11. Sustainability", "Butadienes", "Microalgae", "Rhodococcus"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/66436/1/Published_manuscript.pdf"}, {"href": "http://www.nature.com/articles/s41396-018-0072-6.pdf"}, {"href": "https://repository.essex.ac.uk/21526/1/s41396-018-0072-6.pdf"}, {"href": "https://doi.org/10.1038/s41396-018-0072-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20ISME%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41396-018-0072-6", "name": "item", "description": "10.1038/s41396-018-0072-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41396-018-0072-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-02-20T00:00:00Z"}}, {"id": "10.1038/s41467-017-00192-5", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:18:38Z", "type": "Journal Article", "created": "2017-08-02", "title": "Zhamanshin astrobleme provides evidence for carbonaceous chondrite and post-impact exchange between ejecta and Earth\u2019s atmosphere", "description": "Abstract<p>Chemical fingerprints of impacts are usually compromised by extreme conditions in the impact plume, and the contribution of projectile matter to impactites does not often exceed a fraction of per cent. Here we use chromium and oxygen isotopes to identify the impactor and impact-plume processes for Zhamanshin astrobleme, Kazakhstan. \uffce\uffb554Cr values up to 1.54 in irghizites, part of the fallback ejecta, represent the54Cr-rich extremity of the Solar System range and suggest a CI-like chondrite impactor. \uffce\uff9417O values as low as \uffe2\uff88\uff920.22\uffe2\uff80\uffb0 in irghizites, however, are incompatible with a CI-like impactor. We suggest that the observed17O depletion in irghizites relative to the terrestrial range is caused by partial isotope exchange with atmospheric oxygen (\uffce\uff9417O\uffe2\uff80\uff89=\uffe2\uff80\uff89\uffe2\uff88\uff920.47\uffe2\uff80\uffb0) following material ejection. In contrast, combined \uffce\uff9417O\uffe2\uff80\uff93\uffce\uffb554Cr data for central European tektites (distal ejecta) fall into the terrestrial range and neither impactor fingerprint nor oxygen isotope exchange with the atmosphere are indicated.</p>", "keywords": ["OXYGEN-ISOTOPE COMPOSITION", "NORDLINGER RIES IMPACT", "ORIGIN", "FRACTIONATION", "carbonaceous chondrite; post-impact exchange; ejecta; Earth\u2019s atmosphere", "Science", "Q", "TARGET ROCKS", "[SDU.ASTR.EP] Sciences of the Universe [physics]/Astrophysics [astro-ph]/Earth and Planetary Astrophysics [astro-ph.EP]", "551", "01 natural sciences", "Article", "IVORY-COAST TEKTITES", "13. Climate action", "CRATER", "GLASSES", "ELEMENTS", "WATER", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.nature.com/articles/s41467-017-00192-5.pdf"}, {"href": "https://doi.org/10.1038/s41467-017-00192-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Communications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41467-017-00192-5", "name": "item", "description": "10.1038/s41467-017-00192-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41467-017-00192-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-08-09T00:00:00Z"}}, {"id": "10.1071/fp22294", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:04Z", "type": "Journal Article", "created": "2023-05-10", "title": "A meta-analysis of plant tissue O2 dynamics", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Adequate tissue O2 supply is crucial for plant function. We aimed to identify the environmental conditions and plant characteristics that affect plant tissue O2 status. We extracted data and performed meta-analysis on &gt;1500 published tissue O2 measurements from 112 species. Tissue O2 status ranged from anoxic conditions in roots to &gt;53\u00a0kPa in submerged, photosynthesising shoots. Using information-theoretic model selection, we identified \u2018submergence\u2019, \u2018light\u2019, \u2018tissue type\u2019 as well as \u2018light\u00a0\u00d7\u00a0submergence\u2019 interaction as significant drivers of tissue O2 status. Median O2 status were especially low (&lt;50% of atmospheric equilibrium) in belowground rhizomes, potato (Solanum tuberosum) tubers and root nodules. Mean shoot and root O2 were ~25% higher in light than in dark when shoots had atmospheric contact. However, light showed a significant interaction with submergence on plant O2, with a submergence-induced 44% increase in light, compared with a 42% decline in dark, relative to plants with atmospheric contact. During submergence, ambient water column O2 and shoot tissue O2 correlated stronger in darkness than in light conditions. Although use of miniaturised Clark-type O2 electrodes has enhanced understanding of plant O2 dynamics, application of non-invasive methods in plants is still lacking behind its widespread use in mammalian tissues.</p></article>", "keywords": ["Oxygen", "0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Water", "15. Life on land", "Photosynthesis", "Darkness", "Plant Roots"]}, "links": [{"href": "https://air.uniud.it/bitstream/11390/1246924/1/FP22294.pdf"}, {"href": "https://doi.org/10.1071/fp22294"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Functional%20Plant%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1071/fp22294", "name": "item", "description": "10.1071/fp22294", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1071/fp22294"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-05-10T00:00:00Z"}}, {"id": "10.1073/pnas.1812668115", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:10Z", "type": "Journal Article", "created": "2018-11-30", "title": "Poplar phyllosphere harbors disparate isoprene-degrading bacteria", "description": "<p>             The climate-active gas isoprene (2-methyl-1,3-butadiene) is released to the atmosphere in huge quantities, almost equaling that of methane, yet we know little about the biological cycling of isoprene in the environment. Although bacteria capable of growth on isoprene as the sole source of carbon and energy have previously been isolated from soils and sediments, no microbiological studies have targeted the major source of isoprene and examined the phyllosphere of isoprene-emitting trees for the presence of degraders of this abundant carbon source. Here, we identified isoprene-degrading bacteria in poplar tree-derived microcosms by DNA stable isotope probing. The genomes of isoprene-degrading taxa were reconstructed, putative isoprene metabolic genes were identified, and isoprene-related gene transcription was analyzed by shotgun metagenomics and metatranscriptomics. Gram-positive bacteria of the genus             Rhodococcus             proved to be the dominant isoprene degraders, as previously found in soil. However, a wider diversity of isoprene utilizers was also revealed, notably             Variovorax             , a genus not previously associated with this trait. This finding was confirmed by expression of the isoprene monooxygenase from             Variovorax             in a heterologous host. A             Variovorax             strain that could grow on isoprene as the sole carbon and energy source was isolated. Analysis of its genome confirmed that it contained isoprene metabolic genes with an identical layout and high similarity to those identified by DNA-stable isotope probing and metagenomics. This study provides evidence of a wide diversity of isoprene-degrading bacteria in the isoprene-emitting tree phyllosphere and greatly enhances our understanding of the biodegradation of this important metabolite and climate-active gas.           </p>", "keywords": ["DNA", " Bacterial", "0301 basic medicine", "2. Zero hunger", "570", "0303 health sciences", "QH301 Biology", "Biological Sciences", "15. Life on land", "Mixed Function Oxygenases", "Comamonadaceae", "03 medical and health sciences", "Biodegradation", " Environmental", "Hemiterpenes", "Populus", "13. Climate action", "Butadienes", "Rhodococcus", "Metagenomics", "Genome", " Bacterial", "Phylogeny", "Soil Microbiology"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/69197/1/Published_manuscript.pdf"}, {"href": "https://pnas.org/doi/pdf/10.1073/pnas.1812668115"}, {"href": "https://repository.essex.ac.uk/23631/1/1812668115.full.pdf"}, {"href": "https://doi.org/10.1073/pnas.1812668115"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20National%20Academy%20of%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1073/pnas.1812668115", "name": "item", "description": "10.1073/pnas.1812668115", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1073/pnas.1812668115"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-11-29T00:00:00Z"}}, {"id": "10.1073/pnas.2201072119", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:10Z", "type": "Journal Article", "created": "2022-07-18", "title": "Ethylene inhibits rice root elongation in compacted soil via ABA- and auxin-mediated mechanisms", "description": "<p>             Soil compaction represents a major agronomic challenge, inhibiting root elongation and impacting crop yields. Roots use ethylene to sense soil compaction as the restricted air space causes this gaseous signal to accumulate around root tips. Ethylene inhibits root elongation and promotes radial expansion in compacted soil, but its mechanistic basis remains unclear. Here, we report that ethylene promotes abscisic acid (ABA) biosynthesis and cortical cell radial expansion. Rice mutants of ABA biosynthetic genes had attenuated cortical cell radial expansion in compacted soil, leading to better penetration. Soil compaction-induced ethylene also up-regulates the auxin biosynthesis gene             OsYUC8             . Mutants lacking OsYUC8 are better able to penetrate compacted soil. The auxin influx transporter OsAUX1 is also required to mobilize auxin from the root tip to the elongation zone during a root compaction response. Moreover,             osaux1             mutants penetrate compacted soil better than the wild-type roots and do not exhibit cortical cell radial expansion. We conclude that ethylene uses auxin and ABA as downstream signals to modify rice root cell elongation and radial expansion, causing root tips to swell and reducing their ability to penetrate compacted soil.           </p", "keywords": ["roots", "0301 basic medicine", "570", "Cell biology", "Arabidopsis", "Biophysics", "Plant Science", "Plant Roots", "Biochemistry", "Gene", "Catalysis", "Mixed Function Oxygenases", "Molecular Mechanisms of Plant Development and Regulation", "soil compaction", "Agricultural and Biological Sciences", "Soil", "Abscisic acid", "Ethylene", "03 medical and health sciences", "aba", "ethylene", "Auxin", "Elongation", "Biology", "Plant Proteins", "580", "2. Zero hunger", "0303 health sciences", "Multidisciplinary", "Indoleacetic Acids", "Mutant", "Life Sciences", "Oryza", "Plant Nutrient Uptake and Signaling Pathways", "Biological Sciences", "Ethylenes", "15. Life on land", "Materials science", "Root Aeration", "Chemistry", "ABA", "Plant Responses to Flooding Stress", "Ultimate tensile strength", "Mutation", "Metallurgy", "auxin", "Abscisic Acid"]}, "links": [{"href": "https://pnas.org/doi/pdf/10.1073/pnas.2201072119"}, {"href": "https://doi.org/10.1073/pnas.2201072119"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20National%20Academy%20of%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1073/pnas.2201072119", "name": "item", "description": "10.1073/pnas.2201072119", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1073/pnas.2201072119"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-07-18T00:00:00Z"}}, {"id": "10.1079/bjn19710051", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:11Z", "type": "Journal Article", "created": "2005-05-24", "title": "The Effect Of Tertiary Branched-Chain Carboxylic Acids On The Energy Metabolism Of Sheep", "description": "<p>1. The introduction of certain tertiary branched-chain carboxylic acids into the rumen of sheep, either by continuous infusion or by direct incorporation of the acids in the concentrate food mixture, had no effect on the oxygen consumption or carbon dioxide production of the sheep. Methane production was depressed, the extent of the depression increasing with the molecular weight of the carboxylic acid.</p><p>2. There was a small decrease in the apparent digestibility of the food and a small increase in urinary energy output.</p><p>3. There was no significant increase in the metabolizable energy intake of the sheep. There was, however, a small increase in the amount of energy stored in the body. This small increase was about 84 % of the gross energy of the branched-chain acids added.</p><p>4. It is concluded that any practical advantage to be gained from the addition of branched-chain carboxylic acids to the diet of ruminants remains unproven.</p>", "keywords": ["2. Zero hunger", "Sheep", "Fatty Acids", "Carboxylic Acids", "0402 animal and dairy science", "04 agricultural and veterinary sciences", "Carbon Dioxide", "Urine", "Molecular Weight", "Feces", "Oxygen Consumption", "Animals", "Animal Nutritional Physiological Phenomena", "Methane", "Stearic Acids"], "contacts": [{"organization": "J. L. Clapperton, J. W. Czerkawski,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1079/bjn19710051"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/British%20Journal%20of%20Nutrition", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1079/bjn19710051", "name": "item", "description": "10.1079/bjn19710051", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1079/bjn19710051"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1971-11-01T00:00:00Z"}}, {"id": "10.1079/bjn20051517", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:11Z", "type": "Journal Article", "created": "2005-11-03", "title": "Effect Of Ruminal Administration Of Escherichia Coli Wild Type Or A Genetically Modified Strain With Enhanced High Nitrite Reductase Activity On Methane Emission And Nitrate Toxicity In Nitrate-Infused Sheep", "description": "<p>The effects of two kinds ofEscherichia coli(E. coli) strain, wild-typeE. coliW3110 andE. colinir-Ptac, which has enhanced NO2reduction activity, on oral CH4emission and NO3toxicity in NO3-treated sheep were assessed in a respiratory hood system in a 4\uffc3\uff976 Youden square design. NO3(1\uffc2\uffb73g NaNO3/kg0\uffc2\uffb775body weight) and/orE. colistrains were delivered into the rumen through a fistula as a single dose 30min after the morning meal.Escherichia colicells were inoculated for sheep to provide an initialE. colicell density of optical density at 660nm of 2, which corresponded to 2\uffc3\uff971010cells/ml. The six treatments consisted of saline,E. coliW3110,E. colinir-Ptac, NO3, NO3plusE. coliW3110, and NO3plusE. colinir-Ptac. CH4emission from sheep was reduced by the inoculation ofE. coliW3110 orE. colinir-Ptac by 6% and 12%, respectively. NO3markedly inhibited CH4emission from sheep. Compared with sheep given NO3alone, the inoculation ofE. coliW3110 to NO3-infused sheep lessened ruminal and plasma toxic NO2accumulation and blood methaemoglobin production, while keeping ruminal methanogenesis low. Ruminal and plasma toxic NO2accumulation and blood methaemoglobin production in sheep were unaffected by the inoculation ofE. colinir-Ptac. These results suggest that ruminal methanogenesis may be reduced by the inoculation ofE. coliW3110 orE. colinir-Ptac. The inoculation ofE. coliW3110 may abate NO3toxicity when NO3is used to inhibit CH4emission from ruminants.</p>", "keywords": ["Male", "2. Zero hunger", "Nitrates", "Rumen", "Sheep", "Metabolic Clearance Rate", "0402 animal and dairy science", "04 agricultural and veterinary sciences", "Carbon Dioxide", "Nitrate Reductase", "3. Good health", "Oxygen Consumption", "Fermentation", "Escherichia coli", "Animals", "Infusions", " Parenteral", "Methane", "Methemoglobin", "Nitrites"], "contacts": [{"organization": "Junichi Takahashi, I. Shinzato, Y. Asakura, C. Sar, B. Pen, R. Morikawa, B. Mwenya, A. Tsujimoto, K. Kuwaki, K. Takaura, N. Isogai, Yasuhiko Toride,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1079/bjn20051517"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/British%20Journal%20of%20Nutrition", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1079/bjn20051517", "name": "item", "description": "10.1079/bjn20051517", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1079/bjn20051517"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-11-01T00:00:00Z"}}, {"id": "10.1093/aob/mcab107", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:29Z", "type": "Journal Article", "created": "2021-08-17", "title": "Disentangling water sources in a gypsum plant community. Gypsum crystallization water is a key source of water for shallow-rooted plants", "description": "AbstractBackground and Aims<p>Gypsum drylands are widespread worldwide. In these arid ecosystems, the ability of different species to access different water sources during drought is a key determining factor of the composition of plant communities. Gypsum crystallization water could be a relevant source of water for shallow-rooted plants, but the segregation in the use of this source of water among plants remains unexplored. We analysed the principal water sources used by 20 species living in a gypsum hilltop, the effect of rooting depth and gypsum affinity, and the interaction of the plants with the soil beneath them.</p>Methods<p>We characterized the water stable isotope composition, \uffce\uffb4\uffe2\uff80\uff8a2H and \uffce\uffb4\uffe2\uff80\uff8a18O, of plant xylem water and related it to the free and gypsum crystallization water extracted from different depths throughout the soil profile and the groundwater, in both spring and summer. Bayesian isotope mixing models were used to estimate the contribution of water sources to plant xylem sap.</p>Key Results<p>In spring, all species used free water from the top soil as the main source. In summer, there was segregation in water sources used by different species depending on their rooting depth, but not on their gypsum affinity. Gypsum crystallization water was the main source for most shallow-rooted species, whereas free water from 50 to 100 cm depth was the main source for deep-rooted species. We detected plant\uffe2\uff80\uff93soil interactions in spring, and indirect evidence of possible hydraulic lift by deep-rooted species in summer.</p>Conclusions<p>Plants coexisting in gypsum communities segregate their hydrological niches according to their rooting depth. Crystallization water of gypsum represents an unaccounted for, vital source for most of the shallow-rooted species growing on gypsum drylands. Thus, crystallization water helps shallow-rooted species to endure arid conditions, which eventually accounts for the maintenance of high biodiversity in these specialized ecosystems.</p", "keywords": ["0106 biological sciences", "Root depth", "Water stable isotopes", "Enraizamiento", "Oxygen Isotopes", "Calcium Sulfate", "Plant Roots", "01 natural sciences", "Drought", " gypsum crystallization water", "Soil", "Ecosystem", "Hlant community", "Water", "Bayes Theorem", "Yeso", "Original Articles", "04 agricultural and veterinary sciences", "15. Life on land", "Water sources", "6. Clean water", "Tierras de secano", "Relaciones planta suelo", "0401 agriculture", " forestry", " and fisheries", "Hydrological niche", "Gypsum affinity", "Crystallization"]}, "links": [{"href": "https://academic.oup.com/aob/article-pdf/129/1/87/42111311/mcab107.pdf"}, {"href": "https://doi.org/10.1093/aob/mcab107"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Annals%20of%20Botany", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/aob/mcab107", "name": "item", "description": "10.1093/aob/mcab107", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/aob/mcab107"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-08-18T00:00:00Z"}}, {"id": "10.1093/femsec/fiae152", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:30Z", "type": "Journal Article", "created": "2024-11-19", "title": "A respiro-fermentative strategy to survive nanoxia in Acidobacterium capsulatum", "description": "Abstract                <p>Microbial soil habitats are characterized by rapid shifts in substrate and nutrient availabilities, as well as chemical and physical parameters. One such parameter that can vary in soil is oxygen; thus, microbial survival is dependent on adaptation to this substrate. To better understand the metabolic abilities and adaptive strategies to oxygen-deprived environments, we combined genomics with transcriptomics of a model organism, Acidobacterium capsulatum, to explore the effect of decreasing, environmentally relevant oxygen concentrations. The decrease from 10 to 0.1\uffc2\uffa0\uffc2\uffb5M oxygen (3.6 to 0.036 pO2% present atmospheric level, respectively) caused the upregulation of the transcription of genes involved in signal transduction mechanisms, energy production and conversion and secondary metabolites biosynthesis, transport, and catabolism based on clusters of orthologous group categories. Contrary to established observations for aerobic metabolism, key genes in oxidative stress response were significantly upregulated at lower oxygen concentrations, presumably due to an NADH/NAD+ redox ratio imbalance as the cells transitioned into nanoxia. Furthermore, A. capsulatum adapted to nanoxia by inducing a respiro-fermentative metabolism and rerouting fluxes of its central carbon and energy pathways to adapt to high NADH/NAD+ redox ratios. Our results reveal physiological features and metabolic capabilities that allowed A. capsulatum to adapt to oxygen-limited conditions, which could expand into other environmentally relevant soil strains.</p", "keywords": ["0301 basic medicine", "106022 Mikrobiologie", "0303 health sciences", "Acidobacteriota", "NADH imbalances", "microaerobic respiration", "Gene Expression Regulation", " Bacterial", "Adaptation", " Physiological", "oxygen limitation", "Acidobacteria", "Oxygen", "Oxidative Stress", "03 medical and health sciences", "106026 \u00d6kosystemforschung", "Fermentation", "106022 Microbiology", "106026 Ecosystem research", "fermentation", "transcriptome", "Oxidation-Reduction", "Soil Microbiology", "Research Article"]}, "links": [{"href": "https://doi.org/10.1093/femsec/fiae152"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/FEMS%20Microbiology%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/femsec/fiae152", "name": "item", "description": "10.1093/femsec/fiae152", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/femsec/fiae152"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-11-18T00:00:00Z"}}, {"id": "10.1093/jxb/erad014", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:32Z", "type": "Journal Article", "created": "2023-01-11", "title": "Responses of key root traits in the genusOryzato soil flooding mimicked by stagnant, deoxygenated nutrient solution", "description": "Abstract<p>Excess water can induce flooding stress resulting in yield loss, even in wetland crops such as rice (Oryza). However, traits from species of wild Oryza have already been used to improve tolerance to abiotic stress in cultivated rice. This study aimed to establish root responses to sudden soil flooding among eight wild relatives of rice with different habitat preferences benchmarked against three genotypes of O. sativa. Plants were raised hydroponically, mimicking drained or flooded soils, to assess the plasticity of adventitious roots. Traits included were apparent permeance (PA) to O2 of the outer part of the roots, radial water loss, tissue porosity, apoplastic barriers in the exodermis, and root anatomical traits. These were analysed using a plasticity index and hierarchical clustering based on principal component analysis. For example, O. brachyantha, a wetland species, possessed very low tissue porosity compared with other wetland species, whereas dryland species O. latifolia and O. granulata exhibited significantly lower plasticity compared with wetland species and clustered in their own group. Most species clustered according to growing conditions based on PA, radial water loss, root porosity, and key anatomical traits, indicating strong anatomical and physiological responses to sudden soil flooding.</p", "keywords": ["2. Zero hunger", "Oxygen", "0301 basic medicine", "Soil", "03 medical and health sciences", "Water", "Oryza", "Nutrients", "15. Life on land", "Research Papers", "Plant Roots", "6. Clean water", "Aerenchyma; barrier to radial oxygen loss; phenotypic plasticity; radial oxygen loss; radial water loss; rice; root porosity; root respiration; waterlogging"]}, "links": [{"href": "https://air.uniud.it/bitstream/11390/1246806/2/Tong_Responses%20of%20key%20root%20traits_2023.pdf"}, {"href": "https://academic.oup.com/jxb/article-pdf/74/6/2112/49702123/erad014.pdf"}, {"href": "https://doi.org/10.1093/jxb/erad014"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Experimental%20Botany", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/jxb/erad014", "name": "item", "description": "10.1093/jxb/erad014", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/jxb/erad014"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-11T00:00:00Z"}}, {"id": "10.1093/jxb/erq249", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:32Z", "type": "Journal Article", "created": "2010-08-27", "title": "Plant Physiology And Proteomics Reveals The Leaf Response To Drought In Alfalfa (Medicago Sativa L.)", "description": "Despite its relevance, protein regulation, metabolic adjustment, and the physiological status of plants under drought is not well understood in relation to the role of nitrogen fixation in nodules. In this study, nodulated alfalfa plants were exposed to drought conditions. The study determined the physiological, metabolic, and proteomic processes involved in photosynthetic inhibition in relation to the decrease in nitrogenase (N(ase)) activity. The deleterious effect of drought on alfalfa performance was targeted towards photosynthesis and N(ase) activity. At the leaf level, photosynthetic inhibition was mainly caused by the inhibition of Rubisco. The proteomic profile and physiological measurements revealed that the reduced carboxylation capacity of droughted plants was related to limitations in Rubisco protein content, activation state, and RuBP regeneration. Drought also decreased amino acid content such as asparagine, and glutamic acid, and Rubisco protein content indicating that N availability limitations were caused by N(ase) activity inhibition. In this context, drought induced the decrease in Rubisco binding protein content at the leaf level and proteases were up-regulated so as to degrade Rubisco protein. This degradation enabled the reallocation of the Rubisco-derived N to the synthesis of amino acids with osmoregulant capacity. Rubisco degradation under drought conditions was induced so as to remobilize Rubisco-derived N to compensate for the decrease in N associated with N(ase) inhibition. Metabolic analyses showed that droughted plants increased amino acid (proline, a major compound involved in osmotic regulation) and soluble sugar (D-pinitol) levels to contribute towards the decrease in osmotic potential (\u03a8(s)). At the nodule level, drought had an inhibitory effect on N(ase) activity. This decrease in N(ase) activity was not induced by substrate shortage, as reflected by an increase in total soluble sugars (TSS) in the nodules. Proline accumulation in the nodule could also be associated with an osmoregulatory response to drought and might function as a protective agent against ROS. In droughted nodules, the decrease in N(2) fixation was caused by an increase in oxygen resistance that was induced in the nodule. This was a mechanism to avoid oxidative damage associated with reduced respiration activity and the consequent increase in oxygen content. This study highlighted that even though drought had a direct effect on leaves, the deleterious effects of drought on nodules also conditioned leaf responsiveness.", "keywords": ["Proteomics", "0301 basic medicine", "570", "Rubisco", "Proteome", "[SDV]Life Sciences [q-bio]", "proteome", "N-2 FIXATION RESPONSE", "drought", "N2 fixation", "03 medical and health sciences", "XANTHOPHYLL CYCLE", "N-2 fixation", "2-CYSTEINE PEROXIREDOXIN", "Nitrogenase", "oxidative stress", "AMINO-ACIDS", "Photosynthesis", "climate", "agriculture", "Plant Proteins", "580", "N remobilization", "2. Zero hunger", "0303 health sciences", "photosynthesis", "PINITOL ACCUMULATION", "Drought", "RIBULOSE-1", "5-BISPHOSPHATE CARBOXYLASE-OXYGENASE", "Water", "BRASSICA-NAPUS", "N(O)-TERT-BUTYLDIMETHYLSILYL DERIVATIVES", "15. Life on land", "Research Papers", "6. Clean water", "Droughts", "[SDV] Life Sciences [q-bio]", "Plant Leaves", "nitrogen fixation", "Oxidative stress", "rubisco", "NITROGEN-FIXATION", "WATER-WATER CYCLE", "Medicago sativa"]}, "links": [{"href": "https://doi.org/10.1093/jxb/erq249"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Experimental%20Botany", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/jxb/erq249", "name": "item", "description": "10.1093/jxb/erq249", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/jxb/erq249"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-08-25T00:00:00Z"}}, {"id": "10.1093/plphys/kiae458", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:34Z", "type": "Journal Article", "created": "2024-08-28", "title": "Leaf Gas Film 1 promotes glycerol ester accumulation and formation of a tight root barrier to radial O2 loss in rice", "description": "Abstract                <p>Rice (Oryza sativa L.) and many other wetland plants form an apoplastic barrier in the outer parts of the roots to restrict radial O2 loss to the rhizosphere during soil flooding. This barrier facilitates longitudinal internal O2 diffusion via gas-filled tissues from shoot to root apices, enabling root growth in anoxic soils. We tested the hypothesis that Leaf Gas Film 1 (LGF1), which influences leaf hydrophobicity in rice, plays a crucial role in tight outer apoplastic barrier formation in rice roots. We examined the roots of a rice mutant (dripping wet leaf 7, drp7) lacking functional LGF1, its wild type, and an LGF1 overexpression line for their capacity to develop outer apoplastic barriers that restrict radial O2 loss. We quantified the chemical composition of the outer part of the root and measured radial O2 diffusion from intact roots. The drp7 mutant exhibited a weak barrier to radial O2 loss compared to the wild type. However, introducing functional LGF1 into the mutant fully restored tight barrier function. The formation of a tight barrier to radial O2 loss was associated with increased glycerol ester levels in exodermal cells, rather than differences in total root suberization or lignification. These results demonstrate that, in addition to its role in leaf hydrophobicity regulation, LGF1 plays an important role in controlling the function of the outer apoplastic barriers in roots. Our study suggests that increased deposition of glycerol esters in the suberized root exodermis establishes a tight barrier to radial O2 loss in rice roots.</p", "keywords": ["Oxygen", "Glycerol", "Plant Leaves", "2. Zero hunger", "0106 biological sciences", "Mutation", "Oryza", "Esters", "15. Life on land", "Plant Roots", "01 natural sciences", "Research Article", "Plant Proteins"]}, "links": [{"href": "https://academic.oup.com/plphys/article-pdf/196/4/2437/60933328/kiae458.pdf"}, {"href": "https://doi.org/10.1093/plphys/kiae458"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/plphys/kiae458", "name": "item", "description": "10.1093/plphys/kiae458", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/plphys/kiae458"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-08-28T00:00:00Z"}}, {"id": "10.1093/treephys/tpn046", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:36Z", "type": "Journal Article", "created": "2009-01-28", "title": "Morphological And Physiological Responses Of Scots Pine Fine Roots To Water Supply In A Dry Climatic Region In Switzerland", "description": "In recent decades, Scots pine (Pinus sylvestris L.) forests in inner-Alpine dry valleys of Switzerland have suffered from drought and elevated temperatures, resulting in a higher mortality rate of trees than the mean mortality rate in Switzerland. We investigated the responses of fine roots (standing crop, morphological and physiological features) to water supply in a Scots pine forest in the Rhone valley. Before irrigation started in 2003, low- and high-productivity Scots pine trees were selected based on their crown transparency. The fine root standing crop measured in spring from 2003 to 2005 was unaffected by the irrigation treatment. However, irrigation significantly enhanced the fine root standing crop during the vegetation period when values from spring were compared with values from fall in 2005. Irrigation slightly increased specific root length but decreased root tissue density. Fine root O2-consumption capacity decreased slightly in response to the irrigation treatment. Using ingrowth cores to observe the responses of newly produced fine roots, irrigation had a significantly positive effect on the length of fine roots, but there were no differences between the low- and high-productivity trees. In contrast to the weak response of fine roots to irrigation, the aboveground parts responded positively to irrigation with more dense crowns. The lack of a marked response of the fine root biomass to irrigation in the low- and high-productivity trees suggests that fine roots have a high priority for within-tree carbon allocation.", "keywords": ["0106 biological sciences", "Meteorological Concepts", "Climate", "Temperature", "Water", "Pinus sylvestris", "15. Life on land", "Plant Roots", "01 natural sciences", "Carbon", "6. Clean water", "Droughts", "Oxygen", "Soil", "Biomass", "Switzerland"]}, "links": [{"href": "https://doi.org/10.1093/treephys/tpn046"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Tree%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/treephys/tpn046", "name": "item", "description": "10.1093/treephys/tpn046", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/treephys/tpn046"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-02-04T00:00:00Z"}}, {"id": "10.1104/pp.19.01464", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:43Z", "type": "Journal Article", "created": "2020-03-04", "title": "How Plants Sense and Respond to Stressful Environments", "description": "Plants are exposed to an ever-changing environment to which they have to adjust accordingly. Their response is tightly regulated by complex signaling pathways that all start with stimulus perception. Here, we give an overview of the latest developments in the perception of various abiotic stresses, including drought, salinity, flooding, and temperature stress. We discuss whether proposed perception mechanisms are true sensors, which is well established for some abiotic factors but not yet fully elucidated for others. In addition, we review the downstream cellular responses, many of which are shared by various stresses but result in stress-specific physiological and developmental output. New sensing mechanisms have been identified, including heat sensing by the photoreceptor phytochrome B, salt sensing by glycosylinositol phosphorylceramide sphingolipids, and drought sensing by the specific calcium influx channel OSCA1. The simultaneous occurrence of multiple stress conditions shows characteristic downstream signaling signatures that were previously considered general signaling responses. The integration of sensing of multiple stress conditions and subsequent signaling responses is a promising venue for future research to improve the understanding of plant abiotic stress perception.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Stress", " Physiological", "Life Science", "Calcium", "Environment", "Plants", "15. Life on land", "Reactive Oxygen Species", "Signal Transduction"]}, "links": [{"href": "https://doi.org/10.1104/pp.19.01464"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1104/pp.19.01464", "name": "item", "description": "10.1104/pp.19.01464", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1104/pp.19.01464"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-03-04T00:00:00Z"}}, {"id": "10.1111/1462-2920.13842", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2017-06-27", "title": "Identification and characterisation of isoprene-degrading bacteria in an estuarine environment", "description": "Summary<p>Approximately one\uffe2\uff80\uff90third of volatile organic compounds (VOCs) emitted to the atmosphere consists of isoprene, originating from the terrestrial and marine biosphere, with a profound effect on atmospheric chemistry. However, isoprene provides an abundant and largely unexplored source of carbon and energy for microbes. The potential for isoprene degradation in marine and estuarine samples from the Colne Estuary, UK, was investigated using DNA\uffe2\uff80\uff90Stable Isotope Probing (DNA\uffe2\uff80\uff90SIP). Analysis at two timepoints showed the development of communities dominated by Actinobacteria including members of the genera Mycobacterium, Rhodococcus, Microbacterium and Gordonia. Representative isolates, capable of growth on isoprene as sole carbon and energy source, were obtained from marine and estuarine locations, and isoprene\uffe2\uff80\uff90degrading strains of Gordonia and Mycobacterium were characterised physiologically and their genomes were sequenced. Genes predicted to be required for isoprene metabolism, including four\uffe2\uff80\uff90component isoprene monooxygenases (IsoMO), were identified and compared with previously characterised examples. Transcriptional and activity assays of strains growing on isoprene or alternative carbon sources showed that growth on isoprene is an inducible trait requiring a specific IsoMO. This study is the first to identify active isoprene degraders in estuarine and marine environments using DNA\uffe2\uff80\uff90SIP and to characterise marine isoprene\uffe2\uff80\uff90degrading bacteria at the physiological and molecular level.</p>", "keywords": ["0301 basic medicine", "570", "Volatile Organic Compounds", "0303 health sciences", "550", "Base Sequence", "610", "QR Microbiology", "Sequence Analysis", " DNA", "Environment", "6. Clean water", "Mixed Function Oxygenases", "Mycobacterium", "03 medical and health sciences", "Hemiterpenes", "13. Climate action", "Pentanes", "Butadienes", "Rhodococcus", "14. Life underwater", "Gordonia Bacterium", "Research Articles", "Genome", " Bacterial", "GE Environmental Sciences"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/63998/4/Published_manuscript.pdf"}, {"href": "http://onlinelibrary.wiley.com/wol1/doi/10.1111/1462-2920.13842/fullpdf"}, {"href": "https://doi.org/10.1111/1462-2920.13842"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.13842", "name": "item", "description": "10.1111/1462-2920.13842", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.13842"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-07-21T00:00:00Z"}}, {"id": "10.1111/1541-4337.12727", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2021-03-05", "title": "Antimicrobial nanoparticles and biodegradable polymer composites for active food packaging applications", "description": "Abstract<p>The food industry faces numerous challenges to assure provision of tasty and convenient food that possesses extended shelf life and shows long\uffe2\uff80\uff90term high\uffe2\uff80\uff90quality preservation. Research and development of antimicrobial materials for food applications have provided active antibacterial packaging technologies that are able to meet these challenges. Furthermore, consumers expect and demand sustainable packaging materials that would reduce environmental problems associated with plastic waste. In this review, we discuss antimicrobial composite materials for active food packaging applications that combine highly efficient antibacterial nanoparticles (i.e., metal, metal oxide, mesoporous silica and graphene\uffe2\uff80\uff90based nanomaterials) with biodegradable and environmentally friendly green polymers (i.e., gelatin, alginate, cellulose, and chitosan) obtained from plants, bacteria, and animals. In addition, innovative syntheses and processing techniques used to obtain active and safe packaging are showcased. Implementation of such green active packaging can significantly reduce the risk of foodborne pathogen outbreaks, improve food safety and quality, and minimize product losses, while reducing waste and maintaining sustainability.</p", "keywords": ["0301 basic medicine", "Polymers", "PFAS", "polyvinil alcohol", "EFSA", "MRSA", "02 engineering and technology", "multiwalled carbon nanotubes NP", "European Food Safety Agency", "perfluoroalkyl substances PGA", "food industry", " food safety", " agriculture", "cinnamon essential oil CNT", "reduced graphene oxide ROS", "biodegradable natural polymers", "Anti-Infective Agents", "polybutylene succinate", "biodegradable natural polymers CEO", "ultraviolet", "poly(glycolic acid) PHB", "generally recognized as safe MSN", "methicillin-resistant Staphylococcus aureus MWCNTs", "PBS", "perfluoroalkyl substances", "CEO", "reactive oxygen species", "2. Zero hunger", "generally recognized as safe", "PHBV", "cinnamon essential oil", "PGA", "Food and Drug Administration", "poly(3-hydroxybutyrate-co-3-hydroxyvalerate)", "Food Packaging", "PLGA", "600", "ROS", "European Food Safety Agency FDA", "Anti-Bacterial Agents", "mesoporous silica nanoparticles MRSA", "[SDV] Life Sciences [q-bio]", "food safety", "GO", "PCL", "nanoparticles PBS", "graphene oxide", "PLA", "shelf life", "poly(lactic acid)", "Food and Drug Administration GO", "0210 nano-technology", "FDA", "poly(\u03b5-caprolactone) PFAS", "nanofillers", "polybutylene succinate PCL", "CNT", "PHB", "graphene oxide GRAS", "multiwalled carbon nanotubes", "methicillin-resistant Staphylococcus aureus", "poly(hydroxybutyrate)", "reduced graphene oxide", "NP", "12. Responsible consumption", "03 medical and health sciences", "poly(hydroxybutyrate) PHBV", "rGO", "GRAS", "nanocomposites", "Animals", "poly(lactide-co-glycolide)", "carbon nanotube", "MSN", "MWCNTs", "mesoporous silica nanoparticles", "foodborne pathogens", "poly(3-hydroxybutyrate-co-3-hydroxyvalerate) PLA", "carbon nanotube EFSA", "664", "polyvinil alcohol rGO", "UV", "poly(lactic acid) PLGA", "reactive oxygen species UV", "food industry", "  food safety", " agriculture", "poly(glycolic acid)", "shelf life BNP", "13. Climate action", "PVA", "Nanoparticles", "nanoparticles", "poly(lactide-co-glycolide) PVA", "poly(\u03b5-caprolactone)"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1541-4337.12727"}, {"href": "https://doi.org/10.1111/1541-4337.12727"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Comprehensive%20Reviews%20in%20Food%20Science%20and%20Food%20Safety", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1541-4337.12727", "name": "item", "description": "10.1111/1541-4337.12727", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1541-4337.12727"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-04T00:00:00Z"}}, {"id": "10.1111/1758-2229.13212", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2023-11-08", "title": "Whole\u2010cell studies of substrate and inhibitor specificity of isoprene monooxygenase and related enzymes", "description": "Abstract<p>Co\uffe2\uff80\uff90oxidation of a range of alkenes, dienes, and aromatic compounds by whole cells of the isoprene\uffe2\uff80\uff90degrading bacterium Rhodococcus sp. AD45 expressing isoprene monooxygenase was investigated, revealing a relatively broad substrate specificity for this soluble diiron centre monooxygenase. A range of 1\uffe2\uff80\uff90alkynes (C2\uffe2\uff80\uff93C8) were tested as potential inhibitors. Acetylene, a potent inhibitor of the related enzyme soluble methane monooxygenase, had little inhibitory effect, whereas 1\uffe2\uff80\uff90octyne was a potent inhibitor of isoprene monooxygenase, indicating that 1\uffe2\uff80\uff90octyne could potentially be used as a specific inhibitor to differentiate between isoprene consumption by bona fide isoprene degraders and co\uffe2\uff80\uff90oxidation of isoprene by other oxygenase\uffe2\uff80\uff90containing bacteria, such as methanotrophs, in environmental samples. The isoprene oxidation kinetics of a variety of monooxygenase\uffe2\uff80\uff90expressing bacteria were also investigated, revealing that alkene monooxygenase from Xanthobacter and soluble methane monooxygenases from Methylococcus and Methylocella, but not particulate methane monooxygenases from Methylococcus or Methylomicrobium, could co\uffe2\uff80\uff90oxidise isoprene at appreciable rates. Interestingly the ammonia monooxygenase from the nitrifier Nitrosomonas europaea could also co\uffe2\uff80\uff90oxidise isoprene at relatively high rates, suggesting that co\uffe2\uff80\uff90oxidation of isoprene by additional groups of bacteria, under the right conditions, might occur in the environment.</p", "keywords": ["570", "Bacteria", "Alkynes", "Oxygenases", "Brief Reports", "540", "Methane", "Mixed Function Oxygenases"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/93925/1/Environ_Microbiol_Rep_2023_Sims_Whole_cell_studies_of_substrate_and_inhibitor_specificity_of_isoprene_monooxygenase.pdf"}, {"href": "https://doi.org/10.1111/1758-2229.13212"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1758-2229.13212", "name": "item", "description": "10.1111/1758-2229.13212", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1758-2229.13212"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-11-07T00:00:00Z"}}, {"id": "10.1128/msystems.00562-19", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:31Z", "type": "Journal Article", "created": "2020-01-13", "title": "Transcriptomic Response of Nitrosomonas europaea Transitioned from Ammonia- to Oxygen-Limited Steady-State Growth", "description": "<p>             Nitrification is a ubiquitous microbially mediated process in the environment and an essential process in engineered systems such as wastewater and drinking water treatment plants. However, nitrification also contributes to fertilizer loss from agricultural environments, increasing the eutrophication of downstream aquatic ecosystems, and produces the greenhouse gas nitrous oxide. As ammonia-oxidizing bacteria are the most dominant ammonia-oxidizing microbes in fertilized agricultural soils, understanding their responses to a variety of environmental conditions is essential for curbing the negative environmental effects of nitrification. Notably, oxygen limitation has been reported to significantly increase nitric oxide and nitrous oxide production during nitrification. Here, we investigate the physiology of the best-characterized ammonia-oxidizing bacterium,             Nitrosomonas europaea             , growing under oxygen-limited conditions.           </p", "keywords": ["OXIDIZING BACTERIUM", "0301 basic medicine", "nitrificatio", "Nitrosomonas europaea", "ammonia and oxygen limitation", "NITRIFICATION", "Microbiology", "CYTOCHROME-C", "03 medical and health sciences", "NITROUS-OXIDE PRODUCTION", "SDG 13 - Climate Action", "COMPLETE GENOME SEQUENCE", "ELECTRON-TRANSFER", "14. Life underwater", "SDG 2 \u2013 Kein Hunger", "SDG 2 - Zero Hunger", "Ammonia-oxidizing bacteria", "2. Zero hunger", "106022 Mikrobiologie", "chemostat", "0303 health sciences", "NITRIC-OXIDE", "N2O-PRODUCING PATHWAYS", "15. Life on land", "Ammonia and oxygen limitation", "Nitrification", "HYDROXYLAMINE OXIDOREDUCTASE", "nitrification", "QR1-502", "6. Clean water", "Chemostat", "13. Climate action", "SDG 13 \u2013 Ma\u00dfnahmen zum Klimaschutz", "ammonia-oxidizing bacteria", "106022 Microbiology", "Transcriptome", "transcriptome", "NO REDUCTASE-ACTIVITY", "COMPLETE NITRIFICATION", "Research Article"]}, "links": [{"href": "https://www.biorxiv.org/content/10.1101/765727v1.full.pdf"}, {"href": "https://journals.asm.org/doi/pdf/10.1128/mSystems.00562-19"}, {"href": "https://doi.org/10.1128/msystems.00562-19"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/mSystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/msystems.00562-19", "name": "item", "description": "10.1128/msystems.00562-19", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/msystems.00562-19"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-09-11T00:00:00Z"}}, {"id": "10.1111/j.1365-3040.2008.01869.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:11Z", "type": "Journal Article", "created": "2008-08-05", "title": "Fine-Root Respiration In A Loblolly Pine (Pinus Taedal.) Forest Exposed To Elevated Co2and N Fertilization", "description": "ABSTRACT<p>Forest ecosystems release large amounts of carbon to the atmosphere from fine\uffe2\uff80\uff90root respiration (Rr), but the control of this flux and its temperature sensitivity (Q10) are poorly understood. We attempted to: (1) identify the factors limiting this flux using additions of glucose and an electron transport uncoupler (carbonyl cyanide m\uffe2\uff80\uff90chlorophenylhydrazone); and (2) improve yearly estimates of Rr by directly measuring its Q10in situ using temperature\uffe2\uff80\uff90controlled cuvettes buried around intact, attached roots. The proximal limits of Rr of loblolly pine (Pinus taeda L.) trees exposed to free\uffe2\uff80\uff90air CO2 enrichment (FACE) and N fertilization were seasonally variable; enzyme capacity limited Rr in the winter, and a combination of substrate supply and adenylate availability limited Rr in summer months. The limiting factors of Rr were not affected by elevated CO2 or N fertilization. Elevated CO2 increased annual stand\uffe2\uff80\uff90level Rr by 34% whereas the combination of elevated CO2 and N fertilization reduced Rr by 40%. Measurements of in situ Rr with high temporal resolution detected diel patterns that were correlated with canopy photosynthesis with a lag of 1\uffe2\uff80\uff83d or less as measured by eddy covariance, indicating a dynamic link between canopy photosynthesis and root respiration. These results suggest that Rr is coupled to daily canopy photosynthesis and increases with carbon allocation below ground.</p>", "keywords": ["580", "0106 biological sciences", "Analysis of Variance", "Nitrates", "Atmosphere", "Nitrogen", "Cell Respiration", "Temperature", "Pinus taeda", "Carbon Dioxide", "15. Life on land", "Plant Roots", "01 natural sciences", "Carbon", "Trees", "Glucose", "Oxygen Consumption", "050101 - Ecological Impacts of Climate Change", "13. Climate action", "North Carolina", "Seasons", "Least-Squares Analysis", "Photosynthesis", "Fertilizers", "Ecosystem"]}, "links": [{"href": "https://doi.org/10.1111/j.1365-3040.2008.01869.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%2C%20Cell%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-3040.2008.01869.x", "name": "item", "description": "10.1111/j.1365-3040.2008.01869.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-3040.2008.01869.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-10-06T00:00:00Z"}}, {"id": "10.1111/nph.17474", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:24Z", "type": "Journal Article", "created": "2021-05-20", "title": "Novel functions of the root barrier to radial oxygen loss \u2013 radial diffusion resistance to H2 and water vapour", "description": "Summary<p>   <p>The root barrier to radial O2 loss (ROL) is a trait enabling waterlogging tolerance of plants. The ROL barrier restricts O2 diffusion to the anoxic soil so that O2 is retained inside root tissues.</p>  <p>We hypothesised that the ROL barrier can also restrict radial diffusion of other gases (H2 and water vapour) in rice roots with a barrier to ROL. We used O2 and H2 microsensors to measure ROL and permeability of rice roots, and gravimetric measurements to assess the influence of the ROL barrier on radial water loss (RWL).</p>  <p>The ROL barrier greatly restricted radial diffusion of O2 as well as H2. At 60\uffc2\uffa0kPa pO2, we found no radial diffusion of O2 across the barrier, and for H2 the barrier reduced radial diffusion by 73%. Similarly, RWL was reduced by 93% in roots with a ROL barrier.</p>  <p>Our study showed that the root barrier to ROL not only completely blocks radial O2 diffusion under steep concentration gradients but is also a diffusive barrier to H2 and to water vapour. The strong correlation between ROL and RWL presents a case in which simple measurements of RWL can be used to predict ROL in screening studies with a focus on waterlogging tolerance.</p>  </p", "keywords": ["Oxygen", "0106 biological sciences", "0301 basic medicine", "Soil", "Steam", "03 medical and health sciences", "Oryza", "gas diffusion; Oryza sativa; radial O; 2; loss (ROL); radial water loss (RWL); waterlogging", "15. Life on land", "Plant Roots", "01 natural sciences"]}, "links": [{"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.17474"}, {"href": "https://doi.org/10.1111/nph.17474"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.17474", "name": "item", "description": "10.1111/nph.17474", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.17474"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-06-21T00:00:00Z"}}, {"id": "10.1128/aem.00029-22", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2022-03-14", "title": "Purification and characterisation of the isoprene monooxygenase from Rhodococcus sp. AD45", "description": "<p>Isoprene is a highly abundant climate-active gas and a carbon source for some bacteria. Analyses of the genes encoding isoprene monooxygenase (IsoMO) indicate this enzyme is a soluble diiron center monooxygenase in the same family of oxygenases as soluble methane monooxygenase, alkene monooxygenase, and toluene monooxygenase.</p>", "keywords": ["0301 basic medicine", "570", "0303 health sciences", "03 medical and health sciences", "Hemiterpenes", "Butadienes", "Oxygenases", "Rhodococcus", "Enzymology and Protein Engineering", "540", "Carbon", "Mixed Function Oxygenases", "3. Good health"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/84237/1/Published_Version.pdf"}, {"href": "https://journals.asm.org/doi/pdf/10.1128/aem.00029-22"}, {"href": "https://doi.org/10.1128/aem.00029-22"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.00029-22", "name": "item", "description": "10.1128/aem.00029-22", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.00029-22"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-12T00:00:00Z"}}, {"id": "10.1128/aem.00698-21", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2021-06-23", "title": "Limitation of Microbial Processes at Saturation-Level Salinities in a Microbial Mat Covering a Coastal Salt Flat", "description": "<p>             Due to their abilities to survive intense radiation and low water availability, hypersaline microbial mats are often suggested to be analogs of potential extraterrestrial life. However, even on Earth, the limitations imposed on microbial processes by saturation-level salinity have rarely been studied             in situ             .           </p", "keywords": ["aerobic respiration", "primary and secondary production", "0301 basic medicine", "Geologic Sediments", "hypersaline microbial mats", "microbial communities", "Sodium Chloride", "extremophiles/extremophily", "03 medical and health sciences", "CYANOBACTERIAL MATS", "REDUCING BACTERIA", "uncultured microbes", "BACTERIUM DESULFOVIBRIO-OXYCLINAE", "Environmental Microbiology", "14. Life underwater", "Photosynthesis", "Phylogeny", "DISSIMILATORY SULFATE REDUCTION", "106022 Mikrobiologie", "Bacteria", "Microbiota", "ANOXYGENIC PHOTOSYNTHESIS", "15. Life on land", "Archaea", "biofilm biology", "6. Clean water", "Oxygen", "sulfide microprofiles", "13. Climate action", "CHLOROFLEXUS-LIKE BACTERIA", "106022 Microbiology", "sulfate reduction rate", "GEN. NOV.", "sulfur cycling", "PHYSIOLOGICAL CHARACTERIZATION", "DUNALIELLA", "microbiology of unexplored habitats", "biofilm biology; element cycles and biogeochemical processes; extremophiles/extremophily; microbial communities; microbiology of unexplored habitats; primary and secondary production; uncultured microbes", "element cycles and biogeochemical processes", "key biogeochemical processes", "OXYGENIC PHOTOSYNTHESIS", "Sulfur"]}, "links": [{"href": "https://journals.asm.org/doi/pdf/10.1128/AEM.00698-21"}, {"href": "https://doi.org/10.1128/aem.00698-21"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.00698-21", "name": "item", "description": "10.1128/aem.00698-21", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.00698-21"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-08-11T00:00:00Z"}}, {"id": "10.1128/aem.02218-17", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2017-11-27", "title": "Impact of Peat Mining and Restoration on Methane Turnover Potential and Methane-Cycling Microorganisms in a Northern Bog", "description": "ABSTRACT           <p>             Ombrotrophic peatlands are a recognized global carbon reservoir. Without restoration and peat regrowth, harvested peatlands are dramatically altered, impairing their carbon sink function, with consequences for methane turnover. Previous studies determined the impact of commercial mining on the physicochemical properties of peat and the effects on methane turnover. However, the response of the underlying microbial communities catalyzing methane production and oxidation have so far received little attention. We hypothesize that with the return of             Sphagnum             spp. postharvest, methane turnover potential and the corresponding microbial communities will converge in a natural and restored peatland. To address our hypothesis, we determined the potential methane production and oxidation rates in natural (as a reference), actively mined, abandoned, and restored peatlands over two consecutive years. In all sites, the methanogenic and methanotrophic population sizes were enumerated using quantitative PCR (qPCR) assays targeting the             mcrA             and             pmoA             genes, respectively. Shifts in the community composition were determined using Illumina MiSeq sequencing of the             mcrA             gene and a             pmoA             -based terminal restriction fragment length polymorphism (t-RFLP) analysis, complemented by cloning and sequence analysis of the             mmoX             gene. Peat mining adversely affected methane turnover potential, but the rates recovered in the restored site. The recovery in potential activity was reflected in the methanogenic and methanotrophic abundances. However, the microbial community composition was altered, being more pronounced for the methanotrophs. Overall, we observed a lag between the recovery of the methanogenic/methanotrophic activity and the return of the corresponding microbial communities, suggesting that a longer duration (&gt;15 years) is needed to reverse mining-induced effects on the methane-cycling microbial communities.           </p>           <p>             IMPORTANCE             Ombrotrophic peatlands are a crucial carbon sink, but this environment is also a source of methane, an important greenhouse gas. Methane emission in peatlands is regulated by methane production and oxidation catalyzed by methanogens and methanotrophs, respectively. Methane-cycling microbial communities have been documented in natural peatlands. However, less is known of their response to peat mining and of the recovery of the community after restoration. Mining exerts an adverse impact on potential methane production and oxidation rates and on methanogenic and methanotrophic population abundances. Peat mining also induced a shift in the methane-cycling microbial community composition. Nevertheless, with the return of             Sphagnum             spp. in the restored site after 15 years, methanogenic and methanotrophic activity and population abundance recovered well. The recovery, however, was not fully reflected in the community composition, suggesting that &gt;15 years are needed to reverse mining-induced effects.           </p>", "keywords": ["0301 basic medicine", "570", "oxidation", "hiili", "ta1172", "Euryarchaeota", "630", "Mining", "Soil", "03 medical and health sciences", "Sphagnum", "Bacterial Proteins", "Nitrogen Fixation", "Sphagnopsida", "14. Life underwater", "ennallistaminen", "turvemaat", "Ecosystem", "Phylogeny", "Soil Microbiology", "0303 health sciences", "nifH", "methane", "Microbiota", "ta1182", "land use", "methanogenesis", "15. Life on land", "Carbon", "kasvihuonekaasup\u00e4\u00e4st\u00f6t", "nitrogen fixation", "13. Climate action", "international", "Wetlands", "Oxygenases", "ta1181", "Methane", "Oxidation-Reduction"]}, "links": [{"href": "https://journals.asm.org/doi/pdf/10.1128/AEM.02218-17"}, {"href": "https://doi.org/10.1128/aem.02218-17"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.02218-17", "name": "item", "description": "10.1128/aem.02218-17", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.02218-17"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-02-01T00:00:00Z"}}, {"id": "10.1128/aem.65.8.3599-3604.1999", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:31Z", "type": "Journal Article", "created": "2019-12-19", "title": "Evidence For Involvement Of Gut-Associated Denitrifying Bacteria In Emission Of Nitrous Oxide (N2o) By Earthworms Obtained From Garden And Forest Soils", "description": "ABSTRACT<p>Earthworms (Aporrectodea caliginosa,Lumbricus rubellus, andOctolasion lacteum) obtained from nitrous oxide (N2O)-emitting garden soils emitted 0.14 to 0.87 nmol of N2O h\uffe2\uff88\uff921g (fresh weight)\uffe2\uff88\uff921under in vivo conditions.L. rubellusobtained from N2O-emitting forest soil also emitted N2O, which confirmed previous observations (G. R. Karsten and H. L. Drake, Appl. Environ. Microbiol. 63:1878\uffe2\uff80\uff931882, 1997). In contrast, commercially obtainedLumbricus terrestrisdid not emit N2O; however, such worms emitted N2O when they were fed (i.e., preincubated in) garden soils.A. caliginosa,L. rubellus, andO. lacteumsubstantially increased the rates of N2O emission of garden soil columns and microcosms. Extrapolation of the data to in situ conditions indicated that N2O emission by earthworms accounted for approximately 33% of the N2O emitted by garden soils. In vivo emission of N2O by earthworms obtained from both garden and forest soils was greatly stimulated when worms were moistened with sterile solutions of nitrate or nitrite; in contrast, ammonium did not stimulate in vivo emission of N2O. In the presence of nitrate, acetylene increased the N2O emission rates of earthworms; in contrast, in the presence of nitrite, acetylene had little or no effect on emission of N2O. In vivo emission of N2O decreased by 80% when earthworms were preincubated in soil supplemented with streptomycin and tetracycline. On a fresh weight basis, the rates of N2O emission of dissected earthworm gut sections were substantially higher than the rates of N2O emission of dissected worms lacking gut sections, indicating that N2O production occurred in the gut rather than on the worm surface. In contrast to living earthworms and gut sections that produced N2O under oxic conditions (i.e., in the presence of air), fresh casts (feces) from N2O-emitting earthworms produced N2O only under anoxic conditions. Collectively, these results indicate that gut-associated denitrifying bacteria are responsible for the in vivo emission of N2O by earthworms and contribute to the N2O that is emitted from certain terrestrial ecosystems.</p>", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Bacteria", "Acetylene", "Nitrous Oxide", "15. Life on land", "Anti-Bacterial Agents", "Oxygen", "Soil", "03 medical and health sciences", "Animals", "Salts", "Oligochaeta", "Digestive System", "Ecosystem"], "contacts": [{"organization": "Martina Schmittroth, Carola Matthies, Anja Grie\u00dfhammer, Harold L. Drake,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1128/aem.65.8.3599-3604.1999"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.65.8.3599-3604.1999", "name": "item", "description": "10.1128/aem.65.8.3599-3604.1999", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.65.8.3599-3604.1999"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1999-08-01T00:00:00Z"}}, {"id": "10.3389/fmicb.2018.00703", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:22:18Z", "type": "Journal Article", "created": "2018-04-30", "title": "Evaluation of Primers Targeting the Diazotroph Functional Gene and Development of NifMAP \u2013 A Bioinformatics Pipeline for Analyzing nifH Amplicon Data", "description": "Diazotrophic microorganisms introduce biologically available nitrogen (N) to the global N cycle through the activity of the nitrogenase enzyme. The genetically conserved dinitrogenase reductase (nifH) gene is phylogenetically distributed across four clusters (I-IV) and is widely used as a marker gene for N2 fixation, permitting investigators to study the genetic diversity of diazotrophs in nature and target potential participants in N2 fixation. To date there have been limited, standardized pipelines for analyzing the nifH functional gene, which is in stark contrast to the 16S rRNA gene. Here we present a bioinformatics pipeline for processing nifH amplicon datasets - NifMAP ('NifH MiSeq Illumina Amplicon Analysis Pipeline'), which as a novel aspect uses Hidden-Markov Models to filter out homologous genes to nifH. By using this pipeline, we evaluated the broadly inclusive primer pairs (Ueda19F-R6, IGK3-DVV, and F2-R6) that target the nifH gene. To evaluate any systematic biases, the nifH gene was amplified with the aforementioned primer pairs in a diverse collection of environmental samples (soils, rhizosphere and roots samples, biological soil crusts and estuarine samples), in addition to a nifH mock community consisting of six phylogenetically diverse members. We noted that all primer pairs co-amplified nifH homologs to varying degrees; up to 90% of the amplicons were nifH homologs with IGK3-DVV in some samples (rhizosphere and roots from tall oat-grass). In regards to specificity, we observed some degree of bias across the primer pairs. For example, primer pair F2-R6 discriminated against cyanobacteria (amongst others), yet captured many sequences from subclusters IIIE and IIIL-N. These aforementioned subclusters were largely missing by the primer pair IGK3-DVV, which also tended to discriminate against Alphaproteobacteria, but amplified sequences within clusters IIIC (affiliated with Clostridia) and clusters IVB and IVC. Primer pair Ueda19F-R6 exhibited the least bias and successfully captured diazotrophs in cluster I and subclusters IIIE, IIIL, IIIM, and IIIN, but tended to discriminate against Firmicutes and subcluster IIIC. Taken together, our newly established bioinformatics pipeline, NifMAP, along with our systematic evaluations of nifH primer pairs permit more robust, high-throughput investigations of diazotrophs in diverse environments.", "keywords": ["0301 basic medicine", "DIVERSITY", "nifH gene", "Microbiology", "03 medical and health sciences", "NifMAP", "Nitrogen fixation", "PARTICULATE METHANE MONOOXYGENASE", "MOLYBDENUM-NITROGENASE", "Primer evaluation", "MICROORGANISMS", "NifH gene", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "SEQUENCES", "GROUP-IV NITROGENASE", "AMPLIFICATION", "PERFORMANCE", "16. Peace & justice", "QR1-502", "primer evaluation", "nitrogen fixation", "106022 Microbiology", "COMMUNITIES", "N-2 FIXATION", "Illumina amplicon sequencing"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2018.00703"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2018.00703", "name": "item", "description": "10.3389/fmicb.2018.00703", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2018.00703"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-04-30T00:00:00Z"}}, {"id": "10.1186/s40168-018-0607-0", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:42Z", "type": "Journal Article", "created": "2018-12-07", "title": "Gene probing reveals the widespread distribution, diversity and abundance of isoprene-degrading bacteria in the environment", "description": "Approximately 500\u00a0Tg of isoprene are emitted to the atmosphere annually, an amount similar to that of methane, and despite its significant effects on the climate, very little is known about the biological degradation of isoprene in the environment. Isolation and characterisation of isoprene degraders at the molecular level has allowed the development of probes targeting isoA encoding the \u03b1-subunit of the isoprene monooxygenase. This enzyme belongs to the soluble diiron centre monooxygenase family and catalyses the first step in the isoprene degradation pathway. The use of probes targeting key metabolic genes is a successful approach in molecular ecology to study specific groups of bacteria in complex environments. Here, we developed and tested a novel isoA PCR primer set to study the distribution, abundance, and diversity of isoprene degraders in a wide range of environments.The new isoA probes specifically amplified isoA genes from taxonomically diverse isoprene-degrading bacteria including members of the genera Rhodococcus, Variovorax, and Sphingopyxis. There was no cross-reactivity with genes encoding related oxygenases from non-isoprene degraders. Sequencing of isoA amplicons from DNA extracted from environmental samples enriched with isoprene revealed that most environments tested harboured a considerable variety of isoA sequences, with poplar leaf enrichments containing more phylogenetically diverse isoA genes. Quantification by qPCR using these isoA probes revealed that isoprene degraders are widespread in the phyllosphere, terrestrial, freshwater and marine environments. Specifically, soils in the vicinity of high isoprene-emitting trees contained the highest number of isoprene-degrading bacteria.This study provides the molecular ecology tools to broaden our knowledge of the distribution, abundance and diversity of isoprene degraders in the environment, which is a fundamental step necessary to assess the impact that microbes have in mitigating the effects of this important climate-active gas.", "keywords": ["0301 basic medicine", "570", "Isoprene", "Climate", "Mixed Function Oxygenases", "Microbial ecology", "Comamonadaceae", "03 medical and health sciences", "Hemiterpenes", "Bacterial Proteins", "Butadienes", "Isoprene monooxygenase", "Rhodococcus", "Gene probes", "14. Life underwater", "Phylogeny", "Soil Microbiology", "DNA Primers", "0303 health sciences", "Bacteria", "Research", "isoA", "QR100-130", "QR Microbiology", "Sequence Analysis", " DNA", "15. Life on land", "Sphingomonadaceae", "Biodegradation", " Environmental", "13. Climate action"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/69294/1/Published_manuscript.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1186/s40168-018-0607-0.pdf"}, {"href": "https://repository.essex.ac.uk/23630/1/s40168-018-0607-0.pdf"}, {"href": "https://doi.org/10.1186/s40168-018-0607-0"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40168-018-0607-0", "name": "item", "description": "10.1186/s40168-018-0607-0", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40168-018-0607-0"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-12-01T00:00:00Z"}}, {"id": "10.1186/s40793-021-00386-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:43Z", "type": "Journal Article", "created": "2021-08-26", "title": "Isoprene-degrading bacteria associated with the phyllosphere of Salix fragilis, a high isoprene-emitting willow of the northern hemisphere", "description": "AbstractBackground<p>Isoprene accounts for about half of total biogenic volatile organic compound emissions globally, and as a climate active gas it plays a significant and varied role in atmospheric chemistry. Terrestrial plants are the largest source of isoprene, with willow (Salix) making up one of the most active groups of isoprene producing trees. Bacteria act as a biological sink for isoprene and those bacteria associated with high isoprene-emitting trees may provide further insight into its biodegradation.</p>Results<p>A DNA-SIP experiment incubating willow (Salix fragilis) leaves with13C-labelled isoprene revealed an abundance ofComamonadaceae, Methylobacterium, MycobacteriumandPolaromonasin the isoprene degrading community when analysed by 16S rRNA gene amplicon sequencing. Metagenomic analysis of13C-enriched samples confirmed the abundance ofComamonadaceae, Acidovorax, Polaromonas, VariovoraxandRamlibacter. MycobacteriumandMethylobacteriumwere also identified after metagenomic analysis and aMycobacteriummetagenome-assembled genome (MAG) was recovered. This contained two complete isoprene degradation metabolic gene clusters, along with a propane monooxygenase gene cluster. Analysis of the abundance of the alpha subunit of the isoprene monooxygenase,isoA,in unenriched DNA samples revealed that isoprene degraders associated with willow leaves are abundant, making up nearly 0.2% of the natural bacterial community.</p>Conclusions<p>Analysis of the isoprene degrading community associated with willow leaves using DNA-SIP and focused metagenomics techniques enabled recovery of the genome of an active isoprene-degradingMycobacteriumspecies and provided valuable insight into bacteria involved in degradation of isoprene on the leaves of a key species of isoprene-emitting tree in the northern hemisphere.</p>", "keywords": ["Salix fragilis", "2. Zero hunger", "0301 basic medicine", "570", "0303 health sciences", "isoprene monooxygenase", "Isoprene", "Climate", "isoA", "15. Life on land", "Microbiology", "630", "QR1-502", "6. Clean water", "Environmental sciences", "03 medical and health sciences", "Willow tree", "13. Climate action", "Isoprene monooxygenase", "GE1-350", "willow tree", "isoprene", "climate", "DNA stable isotope probing", "Research Article"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/81258/1/Published_Version.pdf"}, {"href": "https://link.springer.com/content/pdf/10.1186/s40793-021-00386-x.pdf"}, {"href": "https://doi.org/10.1186/s40793-021-00386-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40793-021-00386-x", "name": "item", "description": "10.1186/s40793-021-00386-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40793-021-00386-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-08-26T00:00:00Z"}}, {"id": "10.1371%2fjournal.pone.0044697", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:49Z", "type": "Journal Article", "created": "2012-09-11", "title": "A Novel Stress-Induced Sugarcane Gene Confers Tolerance To Drought, Salt And Oxidative Stress In Transgenic Tobacco Plants", "description": "Drought is a major abiotic stress that affects crop productivity worldwide. Sugarcane can withstand periods of water scarcity during the final stage of culm maturation, during which sucrose accumulation occurs. Meanwhile, prolonged periods of drought can cause severe plant losses.In a previous study, we evaluated the transcriptome of drought-stressed plants to better understand sugarcane responses to drought. Among the up-regulated genes was Scdr1 (sugarcane drought-responsive 1). The aim of the research reported here was to characterize this gene. Scdr1 encodes a putative protein containing 248 amino acids with a large number of proline (19%) and cysteine (13%) residues. Phylogenetic analysis showed that ScDR1is in a clade with homologs from other monocotyledonous plants, separate from those of dicotyledonous plants. The expression of Scdr1 in different varieties of sugarcane plants has not shown a clear association with drought tolerance.The overexpression of Scdr1 in transgenic tobacco plants increased their tolerance to drought, salinity and oxidative stress, as demonstrated by increased photosynthesis, water content, biomass, germination rate, chlorophyll content and reduced accumulation of ROS. Physiological parameters, such as transpiration rate (E), net photosynthesis (A), stomatal conductance (gs) and internal leaf CO(2) concentration, were less affected by abiotic stresses in transgenic Scdr1 plants compared with wild-type plants. Overall, our results indicated that Scdr1 conferred tolerance to multiple abiotic stresses, highlighting the potential of this gene for biotechnological applications.", "keywords": ["Chlorophyll", "Nicotiana", "0301 basic medicine", "Sucrose", "Science", "Molecular Sequence Data", "03 medical and health sciences", "Amino Acid Sequence", "Biomass", "Transgenes", "Photosynthesis", "Phylogeny", "Plant Proteins", "2. Zero hunger", "0303 health sciences", "Base Sequence", "Sequence Homology", " Amino Acid", "Q", "R", "Water", "15. Life on land", "Plants", " Genetically Modified", "6. Clean water", "Droughts", "Saccharum", "Oxidative Stress", "Medicine", "Salts", "Reactive Oxygen Species", "Research Article", "Biotechnology"]}, "links": [{"href": "https://doi.org/10.1371%2fjournal.pone.0044697"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371%2fjournal.pone.0044697", "name": "item", "description": "10.1371%2fjournal.pone.0044697", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371%2fjournal.pone.0044697"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-09-11T00:00:00Z"}}, {"id": "10.1371/journal.pone.0102315", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:53Z", "type": "Journal Article", "created": "2014-07-16", "title": "Soil Biochemical Responses To Nitrogen Addition In A Bamboo Forest", "description": "Many vital ecosystem processes take place in the soils and are greatly affected by the increasing active nitrogen (N) deposition observed globally. Nitrogen deposition generally affects ecosystem processes through the changes in soil biochemical properties such as soil nutrient availability, microbial properties and enzyme activities. In order to evaluate the soil biochemical responses to elevated atmospheric N deposition in bamboo forest ecosystems, a two-year field N addition experiment in a hybrid bamboo (Bambusa pervariabilis \u00d7 Dendrocalamopsis daii) plantation was conducted. Four levels of N treatment were applied: (1) control (CK, without N added), (2) low-nitrogen (LN, 50 kg N ha(-1) year(-1)), (3) medium-nitrogen (MN, 150 kg N ha(-1) year(-1)), and (4) high-nitrogen (HN, 300 kg N ha(-1) year(-1)). Results indicated that N addition significantly increased the concentrations of NH4(+), NO3(-), microbial biomass carbon, microbial biomass N, the rates of nitrification and denitrification; significantly decreased soil pH and the concentration of available phosphorus, and had no effect on the total organic carbon and total N concentration in the 0-20 cm soil depth. Nitrogen addition significantly stimulated activities of hydrolytic enzyme that acquiring N (urease) and phosphorus (acid phosphatase) and depressed the oxidative enzymes (phenol oxidase, peroxidase and catalase) activities. Results suggest that (1) this bamboo forest ecosystem is moving towards being limited by P or co-limited by P under elevated N deposition, (2) the expected progressive increases in N deposition may have a potential important effect on forest litter decomposition due to the interaction of inorganic N and oxidative enzyme activities, in such bamboo forests under high levels of ambient N deposition.", "keywords": ["Analysis of Variance", "China", "Atmosphere", "Monophenol Monooxygenase", "Nitrogen", "Science", "Q", "Acid Phosphatase", "R", "04 agricultural and veterinary sciences", "Forests", "15. Life on land", "Catalase", "Nitrification", "Soil", "Ammonia", "Denitrification", "Medicine", "Urea", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Sasa", "Soil Microbiology", "Research Article", "Peroxidase"]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0102315"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0102315", "name": "item", "description": "10.1371/journal.pone.0102315", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0102315"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-07-16T00:00:00Z"}}, {"id": "10.1371/journal.pone.0219479", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:54Z", "type": "Journal Article", "created": "2019-07-23", "title": "An integrated assessment of nitrogen source, transformation and fate within an intensive dairy system to inform management change", "description": "From an environmental perspective optimised dairy systems, which follow current regulations, still have low nitrogen (N) use efficiency, high N surplus (kg N ha-1) and enable ad-hoc delivery of direct and indirect reactive N losses to water and the atmosphere. The objective of the present study was to divide an intensive dairy farm into N attenuation capacity areas based on this ad-hoc delivery. Historical and current spatial and temporal multi-level data- sets (stable isotope and dissolved gas) were combined and interpreted. Results showed that the farm had four distinct attenuation areas: high N attenuation: characterised by ammonium-N (NH4+-N) below 0.23 mg NH4+-N l-1 and nitrate (NO3--N) below 5.65 mg NO3-- N l-1 in surface, drainage and groundwater, located on imperfectly to moderately-well drained soils with high denitrification potential and low nitrous oxide (N2O) emissions (av. 0.0032 mg N2O-N l-1); moderate N attenuation: characterised by low NO3--N concentration in drainage water but high N2O production (0.0317 mg N2O-N l-1) and denitrification potential lower than group 1 (av. \u03b415N-NO3-: 16.4 , av. \u03b418O-NO3-: 9.2 ), on well to moderately drained soils; low N attenuation area 1: characterised by high NO3--N (av. 6.90 mg NO3--N l-1) in drainage water from well to moderately-well drained soils, with low denitrification potential (av. \u03b415N-NO3-: 9.5 , av. \u03b418O-NO3-: 5.9 ) and high N2O emissions (0.0319 mg N2O l-1); and low N attenuation area 2: characterised by high NH4+-N (av. 3.93 mg NH4+-N l-1 and high N2O emissions (av. 0.0521 mg N2O l-1) from well to imperfectly drained soil. N loads on site should be moved away from low attenuation areas and emissions to air and water should be assessed.", "keywords": ["dairy systems", "Farms", "Time Factors", "550", "Nitrogen", "Science", "Nitrous Oxide", "management change", "Oxygen Isotopes", "01 natural sciences", "Permeability", "nitrogen", "dissimilatory nitrate reduction to ammonium", "soil", "Dairy system", "Soil", "Isotopes", "Waste Management", "Oxygen Radioisotopes", "Ammonium Compounds", "0105 earth and related environmental sciences", "2. Zero hunger", "Nitrates", "Geography", "Stable Isotopes", "Q", "R", "Water", "Agriculture", "15. Life on land", "nitrification", "6. Clean water", "Management", "DNRA", "Dairying", "Milk", "Slurries", "13. 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