{"type": "FeatureCollection", "features": [{"id": "10.1093/treephys/tpr121", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:36Z", "type": "Journal Article", "created": "2011-12-07", "title": "Leaf-Trait Responses To Irrigation Of The Endemic Fog-Oasis Tree Myrcianthes Ferreyrae: Can A Fog Specialist Benefit From Regular Watering?", "description": "Myrcianthes ferreyrae is an endemic, endangered species, with a small number of individuals located only in hyperarid, fog-oases known as lomas along the Peruvian desert in southern Peru, where fog is the main source of water. Following centuries of severe deforestation, reforestation with this native species was conducted in the Atiquipa lomas, Arequipa-Per\u00fa. On five slopes, five 2-year-old seedlings were irrigated monthly with water trapped by raschel-mesh fog collectors, supplementing natural rainfall with 0, 20, 40, 60 and 80 mm month(-1) from February to August 2008. We measured plant growth, increment in basal diameter, height and five leaf traits: leaf mass area (LMA), leaf carbon isotope composition (\u03b4(13)C), nitrogen per leaf area, total leaf carbon and stomatal density; which are indicative of the physiological changes resulting from increased water supply. Plant growth rates, estimated from the variation of either shoot basal diameter or maximum height, were highly correlated with total biomass. Only LMA and \u03b4(13)C were higher in irrigated than in control plants, but we found no further differences among irrigation treatments. This threshold response suggests an on-off strategy fitted to exploit pulses of fog water, which are always limited in magnitude in comparison with natural rain. The absence of a differential response to increased water supply is in agreement with the low phenotypic plasticity expected in plants from very stressful environments. Our results have practical implications for reforestation projects, since irrigating with 20 mm per month is sufficient to achieve the full growth capacity of this species.", "keywords": ["0106 biological sciences", "Carbon Isotopes", "Principal Component Analysis", "Agricultural Irrigation", "Geography", "Water", "15. Life on land", "01 natural sciences", "Statistics", " Nonparametric", "6. Clean water", "Trees", "Plant Leaves", "Quantitative Trait", " Heritable", "Multivariate Analysis", "Peru", "Plant Stomata", "Biomass", "Weather"]}, "links": [{"href": "https://doi.org/10.1093/treephys/tpr121"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Tree%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/treephys/tpr121", "name": "item", "description": "10.1093/treephys/tpr121", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/treephys/tpr121"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-12-05T00:00:00Z"}}, {"id": "10.1093/treephys/tpr066", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:36Z", "type": "Journal Article", "created": "2011-08-04", "title": "Root Standing Crop And Chemistry After Six Years Of Soil Warming In A Temperate Forest", "description": "Examining the responses of root standing crop (biomass and necromass) and chemistry to soil warming is crucial for understanding root dynamics and functioning in the face of global climate change. We assessed the standing crop, total nitrogen (N) and carbon (C) compounds in tree roots and soil net N mineralization over the growing season after 6 years of experimental soil warming in a temperate deciduous forest in 2008. Roots were sorted into four different categories: live and dead fine roots (\u22641mm in diameter) and live and dead coarse roots (1-4 mm in diameter). Total root standing crop (live plus dead) in the top 10 cm of soil in the warmed area was 42.5% (378.4 vs. 658.5 g m(-2)) lower than in the control area, while live root standing crop in the warmed area was 62% lower than in the control area. Soil net N mineralization over the growing season increased by 79.4% in the warmed relative to the control area. Soil warming did not significantly change the concentrations of C and C compounds (sugar, starch, hemicellulose, cellulose and lignin) in the four root categories. However, total N concentration in the live fine roots in the warmed area was 10.5% (13.7 vs. 12.4 mg g(-1)) higher and C:N ratio was 8.6% (38.5 vs. 42.1) lower than in the control area. The increase in N concentration in the live fine roots could be attributed to the increase in soil N availability due to soil warming. Net N mineralization was negatively correlated with both live and dead fine roots in the mineral soil that is home to the majority of roots, suggesting that soil warming increases N mineralization, decreases fine root biomass and thus decreases C allocation belowground.", "keywords": ["2. Zero hunger", "0106 biological sciences", "Hot Temperature", "Climate Change", "04 agricultural and veterinary sciences", "15. Life on land", "Plant Roots", "01 natural sciences", "Trees", "Soil", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Organic Chemicals", "Nitrogen Compounds"]}, "links": [{"href": "https://doi.org/10.1093/treephys/tpr066"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Tree%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/treephys/tpr066", "name": "item", "description": "10.1093/treephys/tpr066", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/treephys/tpr066"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-07-01T00:00:00Z"}}, {"id": "10.1094/mpmi-03-24-0024-r", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:36Z", "type": "Journal Article", "created": "2024-06-21", "title": "Rhizobial Secretion of Truncated Exopolysaccharides Severely Impairs the Mesorhizobium-Lotus Symbiosis", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p> The symbiosis between Mesorhizobium japonicum R7A and Lotus japonicus Gifu is an important model system for investigating the role of bacterial exopolysaccharides (EPS) in plant-microbe interactions. Previously, we showed that R7A exoB mutants that are affected at an early stage of EPS synthesis and in lipopolysaccharide (LPS) synthesis induce effective nodules on L. japonicus Gifu after a delay, whereas exoU mutants affected in the biosynthesis of the EPS side chain induce small uninfected nodule primordia and are impaired in infection. The presence of a halo around the exoU mutant when grown on Calcofluor-containing media suggested the mutant secreted a truncated version of R7A EPS. A nonpolar \u0394 exoA mutant defective in the addition of the first glucose residue to the EPS backbone was also severely impaired symbiotically. Here, we used a suppressor screen to show that the severe symbiotic phenotype of the exoU mutant was due to the secretion of an acetylated pentasaccharide, as both monomers and oligomers, by the same Wzx/Wzy system that transports wild-type exopolysaccharide. We also present evidence that the \u0394 exoA mutant secretes an oligosaccharide by the same transport system, contributing to its symbiotic phenotype. In contrast, \u0394 exoYF and polar exoA and exoL mutants have a similar phenotype to exoB mutants, forming effective nodules after a delay. These studies provide substantial evidence that secreted incompatible EPS is perceived by the plant, leading to abrogation of the infection process. </p><p> [Formula: see text] Copyright \u00a9 2024 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license . </p></article>", "keywords": ["0301 basic medicine", "0303 health sciences", "exo mutants", "exopolysaccharide secretion", "Polysaccharides", " Bacterial", "Botany", "Mesorhizobium", "Microbiology", "QR1-502", "03 medical and health sciences", "Bacterial Proteins", "QK1-989", "Mutation", "Mesorhizobium-Lotus symbiosis", "Lotus", "truncated exopolysaccharide", "Symbiosis", "Root Nodules", " Plant"]}, "links": [{"href": "https://doi.org/10.1094/mpmi-03-24-0024-r"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Molecular%20Plant-Microbe%20Interactions%C2%AE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1094/mpmi-03-24-0024-r", "name": "item", "description": "10.1094/mpmi-03-24-0024-r", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1094/mpmi-03-24-0024-r"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-09-01T00:00:00Z"}}, {"id": "10.1098/rspa.2017.0178", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:39Z", "type": "Journal Article", "created": "2017-11-22", "title": "Fluid flow in porous media using image-based modelling to parametrize Richards' equation", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The parameters in Richards' equation are usually calculated from experimentally measured values of the soil\u2013water characteristic curve and saturated hydraulic conductivity. The complex pore structures that often occur in porous media complicate such parametrization due to hysteresis between wetting and drying and the effects of tortuosity. Rather than estimate the parameters in Richards' equation from these indirect measurements, image-based modelling is used to investigate the relationship between the pore structure and the parameters. A three-dimensional, X-ray computed tomography image stack of a soil sample with voxel resolution of 6\u2009\u03bcm has been used to create a computational mesh. The Cahn\u2013Hilliard\u2013Stokes equations for two-fluid flow, in this case water and air, were applied to this mesh and solved using the finite-element method in COMSOL Multiphysics. The upscaled parameters in Richards' equation are then obtained via homogenization. The effect on the soil\u2013water retention curve due to three different contact angles, 0\u00b0, 20\u00b0 and 60\u00b0, was also investigated. The results show that the pore structure affects the properties of the flow on the large scale, and different contact angles can change the parameters for Richards' equation.</p></article>", "keywords": ["0301 basic medicine", "Richards\u2019 equation", "330", "EP/M020355/1", "QH301 Biology", "530", "QH301", "03 medical and health sciences", "porous media", "646809DIMR", "Journal Article", "BB/L025620/1", "BB/J00868/1", "NE/L00237/1", "Research Articles", "0303 health sciences", "Civil_env_eng", "Natural Environment Research Council (NERC)", "621", "6. Clean water", "004", "620", "3. Good health", "image-based modelling", "Richards' equation", "Engineering and Physical Sciences Research Council (EPSRC)", "Biotechnology and Biological Sciences Research Council (BBSRC)", "BB/P004180/1", "BB/L025825/1", "European Research Council"]}, "links": [{"href": "https://repository.uwl.ac.uk/id/eprint/4979/1/20170178.full.pdf"}, {"href": "https://eprints.soton.ac.uk/415076/1/ImageBasedRichardsPRST.pdf"}, {"href": "https://eprints.soton.ac.uk/415076/2/SupplementaryFigure.pdf"}, {"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rspa.2017.0178"}, {"href": "https://doi.org/10.1098/rspa.2017.0178"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20Royal%20Society%20A%3A%20Mathematical%2C%20Physical%20and%20Engineering%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rspa.2017.0178", "name": "item", "description": "10.1098/rspa.2017.0178", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rspa.2017.0178"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-11-01T00:00:00Z"}}, {"id": "10.1098/rspa.2018.0149", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:39Z", "type": "Journal Article", "created": "2018-09-05", "title": "The effect of root exudates on rhizosphere water dynamics", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Most water and nutrients essential for plant growth travel across a thin zone of soil at the interface between roots and soil, termed the rhizosphere. Chemicals exuded by plant roots can alter the fluid properties, such as viscosity, of the water phase, potentially with impacts on plant productivity and stress tolerance. In this paper, we study the effects of plant exudates on the macroscale properties of water movement in soil. Our starting point is a microscale description of two fluid flow and exudate diffusion in a periodic geometry composed from a regular repetition of a unit cell. Using multiscale homogenization theory, we derive a coupled set of equations that describe the movement of air and water, and the diffusion of plant exudates on the macroscale. These equations are parametrized by a set of cell problems that capture the flow behaviour. The mathematical steps are validated by comparing the resulting homogenized equations to the original pore scale equations, and we show that the difference between the two models is \u22727% for eight cells. The resulting equations provide a computationally efficient method to study plant\u2013soil interactions. This will increase our ability to predict how contrasting root exudation patterns may influence crop uptake of water and nutrients.</p></article>", "keywords": ["Richards\u2019 equation", "General Mathematics", "Porous media", "General Physics and Astronomy", "630", "646809DIMR", "QD", "BB/L025620/1", "/dk/atira/pure/subjectarea/asjc/2600/2600", "name=General Engineering", "BB/J00868/1", "NE/L00237/1", "/dk/atira/pure/subjectarea/asjc/2200/2200", "Research Articles", "Homogenization", "Natural Environment Research Council (NERC)", "General Engineering", "04 agricultural and veterinary sciences", "15. Life on land", "QD Chemistry", "name=General Mathematics", "EP/P020887/1", "Engineering and Physical Sciences Research Council (EPSRC)", "name=General Physics and Astronomy", "13. Climate action", "Biotechnology and Biological Sciences Research Council (BBSRC)", "0401 agriculture", " forestry", " and fisheries", "/dk/atira/pure/subjectarea/asjc/3100/3100", "BB/P004180/1", "European Research Council"]}, "links": [{"href": "https://eprints.soton.ac.uk/423010/1/Paper_Final.pdf"}, {"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rspa.2018.0149"}, {"href": "https://doi.org/10.1098/rspa.2018.0149"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20Royal%20Society%20A%3A%20Mathematical%2C%20Physical%20and%20Engineering%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rspa.2018.0149", "name": "item", "description": "10.1098/rspa.2018.0149", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rspa.2018.0149"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-09-01T00:00:00Z"}}, {"id": "10.1098/rspb.2016.2570", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:39Z", "type": "Journal Article", "created": "2017-03-29", "title": "Warming magnifies predation and reduces prey coexistence in a model litter arthropod system", "description": "<p>Climate warming can destabilize interactions between competitors as smaller organisms gain advantages in warmer environments. Whether and how warming-induced effects on competitive interactions are modified by predation remains unknown. We hypothesized that predation will offset the competitive advantage of smaller prey species in warmer environments because of their greater vulnerability to predation. To test this, we assembled a litter arthropod community with two Collembola species (Folsomia candidaandProisotoma minuta) of different body sizes across a temperature gradient (three thermal environments) and in the presence and absence of predatory mites. Predatory mites reduced Collembola coexistence with increasing temperatures. Contradicting our hypothesis, the larger prey species always outperformed the smaller prey species in warmer environments with predators. Larger prey probably benefited as they expressed a greater trait (body length) plasticity to warming. Warming can thus magnify predation effects and reduce the probability of prey coexistence.</p>", "keywords": ["0106 biological sciences", "Mites", "Food Chain", "13. Climate action", "Climate Change", "Predatory Behavior", "11. Sustainability", "Animals", "Body Size", "15. Life on land", "Arthropods", "Models", " Biological", "01 natural sciences"]}, "links": [{"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rspb.2016.2570"}, {"href": "https://doi.org/10.1098/rspb.2016.2570"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rspb.2016.2570", "name": "item", "description": "10.1098/rspb.2016.2570", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rspb.2016.2570"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-03-29T00:00:00Z"}}, {"id": "10.1111/ejss.12487", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:52Z", "type": "Journal Article", "created": "2017-10-27", "title": "Plant exudates may stabilize or weaken soil depending on species, origin and time", "description": "Summary<p>We hypothesized that plant exudates could either gel or disperse soil depending on their chemical characteristics. Barley (Hordeum vulgare L. cv. Optic) and maize (Zea mays L. cv. Freya) root exudates were collected using an aerated hydroponic method and compared with chia (Salvia hispanica L.) seed exudate, a commonly used root exudate analogue. Sandy loam soil was passed through a 500\uffe2\uff80\uff90\uffce\uffbcm mesh and treated with each exudate at a concentration of 4.6 mg exudate g\uffe2\uff88\uff921 dry soil. Two sets of soil samples were prepared. One set of treated soil samples was maintained at 4\uffc2\uffb0C to suppress microbial processes. To characterize the effect of decomposition, the second set of samples was incubated at 16\uffc2\uffb0C for 2 weeks at \uffe2\uff88\uff9230 kPa matric potential. Gas chromatography\uffe2\uff80\uff93mass spectrometry (GC\uffe2\uff80\uff93MS) analysis of the exudates showed that barley had the largest organic acid content and chia the largest content of sugars (polysaccharide\uffe2\uff80\uff90derived or free), and maize was in between barley and chia. Yield stress of amended soil samples was measured by an oscillatory strain sweep test with a cone plate rheometer. When microbial decomposition was suppressed at 4\uffc2\uffb0C, yield stress increased 20\uffe2\uff80\uff90fold for chia seed exudate and twofold for maize root exudate compared with the control, whereas for barley root exudate decreased to half. The yield stress after 2 weeks of incubation compared with soil with suppressed microbial decomposition increased by 85% for barley root exudate, but for chia and maize it decreased by 87 and 54%, respectively. Barley root exudation might therefore disperse soil and this could facilitate nutrient release. The maize root and chia seed exudates gelled soil, which could create a more stable soil structure around roots or seeds.</p>Highlights<p>  <p>Rheological measurements quantified physical behaviour of plant exudates and effect on soil stabilization.</p> <p>Barley root exudates dispersed soil, which could release nutrients and carbon.</p> <p>Maize root and chia seed exudates had a stabilizing effect on soil.</p> <p>Physical engineering of soil in contact with plant roots depends on the nature and origin of exudates.</p>  </p", "keywords": ["construction", "0301 basic medicine", "EP/M020355/1", "seed exudate", "QH301 Biology", "610", "root exudate", "630", "QH301", "03 medical and health sciences", "DIMR 646809", "microbial decompisition", "Physical Processes and Function", "NE/L00237/1", "2. Zero hunger", "soil gelling", "BB/J000868/1", "Civil_env_eng", "Natural Environment Research Council (NERC)", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water", "yield stress", "BB/J011460/1", "BB/L026058/1", "Engineering and Physical Sciences Research Council (EPSRC)", "soil dispersion", "viscosity", "Biotechnology and Biological Sciences Research Council (BBSRC)", "0401 agriculture", " forestry", " and fisheries", "microbial decomposition", "yeild stress", "European Research Council"]}, "links": [{"href": "https://repository.uwl.ac.uk/id/eprint/4980/1/Naveed_et_al-2017-European_Journal_of_Soil_Science.pdf"}, {"href": "https://eprints.soton.ac.uk/414238/1/EJSS_submitted_Manuscript.pdf"}, {"href": "http://onlinelibrary.wiley.com/wol1/doi/10.1111/ejss.12487/fullpdf"}, {"href": "https://doi.org/10.1111/ejss.12487"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/European%20Journal%20of%20Soil%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/ejss.12487", "name": "item", "description": "10.1111/ejss.12487", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/ejss.12487"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-10-27T00:00:00Z"}}, {"id": "10.1098/rstb.2017.0302", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:39Z", "type": "Journal Article", "created": "2018-10-08", "title": "Tropical land carbon cycle responses to 2015/16 El Ni\u00f1o as recorded by atmospheric greenhouse gas and remote sensing data", "description": "<p>             The outstanding tropical land climate characteristic over the past decades is rapid warming, with no significant large-scale precipitation trends. This warming is expected to continue but the effects on tropical vegetation are unknown. El Ni\uffc3\uffb1o-related heat peaks may provide a test bed for a future hotter world. Here we analyse tropical land carbon cycle responses to the 2015/16 El Ni\uffc3\uffb1o heat and drought anomalies using an atmospheric transport inversion. Based on the global atmospheric CO             2             and fossil fuel emission records, we find no obvious signs of anomalously large carbon release compared with earlier El Ni\uffc3\uffb1o events, suggesting resilience of tropical vegetation. We find roughly equal net carbon release anomalies from Amazonia and tropical Africa, approximately 0.5 PgC each, and smaller carbon release anomalies from tropical East Asia and southern Africa. Atmospheric CO anomalies reveal substantial fire carbon release from tropical East Asia peaking in October 2015 while fires contribute only a minor amount to the Amazonian carbon flux anomaly. Anomalously large Amazonian carbon flux release is consistent with downregulation of primary productivity during peak negative near-surface water anomaly (October 2015 to March 2016) as diagnosed by solar-induced fluorescence. Finally, we find an unexpected anomalous positive flux to the atmosphere from tropical Africa early in 2016, coincident with substantial CO release.           </p>           <p>This article is part of a discussion meeting issue \uffe2\uff80\uff98The impact of the 2015/2016 El Ni\uffc3\uffb1o on the terrestrial tropical carbon cycle: patterns, mechanisms and implications\uffe2\uff80\uff99.</p>", "keywords": ["Life Sciences & Biomedicine - Other Topics", "FLUX", "0301 basic medicine", "Hot Temperature", "550", "551", "global warming", "01 natural sciences", "Carbon Cycle", "Greenhouse Gases", "03 medical and health sciences", "[SDU.STU.CL] Sciences of the Universe [physics]/Earth Sciences/Climatology", "CHEMICAL-TRANSPORT MODEL", "carbon cycle", "INVERSION", "Biology", "TEMPERATURE", "11 Medical and Health Sciences", "0105 earth and related environmental sciences", "tropical forests", "El Nino-Southern Oscillation", "Evolutionary Biology", "Tropical Climate", "Science & Technology", "Atmosphere", "PHOTOSYNTHESIS", "EQUATORIAL PACIFIC", "Articles", "06 Biological Sciences", "15. Life on land", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "6. Clean water", "Droughts", "[SDU.STU.CL]Sciences of the Universe [physics]/Earth Sciences/Climatology", "13. Climate action", "PRECIPITATION", "Remote Sensing Technology", "INDUCED CHLOROPHYLL FLUORESCENCE", "CO2", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", "SENSITIVITY", "environment", "Life Sciences & Biomedicine", "fire"]}, "links": [{"href": "https://eprints.whiterose.ac.uk/135234/8/Tropical%20land%20carbon%20cycle%20responses%20to%202015/16%20El%20Ni%C3%B1o%20as%20recorded%20by%20atmospheric%20greenhouse%20gas%20and%20remote%20sensing%20data.pdf"}, {"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rstb.2017.0302"}, {"href": "https://doi.org/10.1098/rstb.2017.0302"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Philosophical%20Transactions%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rstb.2017.0302", "name": "item", "description": "10.1098/rstb.2017.0302", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rstb.2017.0302"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-10-08T00:00:00Z"}}, {"id": "10.1111/gcb.15547", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:57Z", "type": "Journal Article", "created": "2021-02-06", "title": "Feasibility of the 4 per 1000 aspirational target for soil carbon: A case study for France", "description": "Abstract<p>Increasing soil organic carbon (SOC) stocks is a promising way to mitigate the increase in atmospheric CO2 concentration. Based on a simple ratio between CO2 anthropogenic emissions and SOC stocks worldwide, it has been suggested that a 0.4% (4 per 1000) yearly increase in SOC stocks could compensate for current anthropogenic CO2 emissions. Here, we used a reverse RothC modelling approach to estimate the amount of C inputs to soils required to sustain current SOC stocks and to increase them by 4\uffe2\uff80\uffb0 per year over a period of 30\uffc2\uffa0years. We assessed the feasibility of this aspirational target first by comparing the required C input with net primary productivity (NPP) flowing to the soil, and second by considering the SOC saturation concept. Calculations were performed for mainland France, at a 1\uffc2\uffa0km grid cell resolution. Results showed that a 30%\uffe2\uff80\uff9340% increase in C inputs to soil would be needed to obtain a 4\uffe2\uff80\uffb0 increase per year over a 30\uffe2\uff80\uff90year period. 88.4% of cropland areas were considered unsaturated in terms of mineral\uffe2\uff80\uff90associated SOC, but characterized by a below target C balance, that is, less NPP available than required to reach the 4\uffe2\uff80\uffb0 aspirational target. Conversely, 90.4% of unimproved grasslands were characterized by an above target C balance, that is, enough NPP to reach the 4\uffe2\uff80\uffb0 objective, but 59.1% were also saturated. The situation of improved grasslands and forests was more evenly distributed among the four categories (saturated vs. unsaturated and above vs below target C balance). Future data from soil monitoring networks should enable to validate these results. Overall, our results suggest that, for mainland France, priorities should be (1) to increase NPP returns in cropland soils that are unsaturated and have a below target carbon balance and (2) to preserve SOC stocks in other land uses.</p", "keywords": ["[SDV.SA]Life Sciences [q-bio]/Agricultural sciences", "Carbon Sequestration", "550", "[SDE.MCG]Environmental Sciences/Global Changes", "RothC", "01 natural sciences", "630", "climate change mitigation", "12. Responsible consumption", "Soil", "11. Sustainability", "4 per 1000", "net primary productivity", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", " environment", "0105 earth and related environmental sciences", "[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", " Atmosphere", "2. Zero hunger", "[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", "[SDV.SA] Life Sciences [q-bio]/Agricultural sciences", "Atmosphere", "[SDU.OCEAN] Sciences of the Universe [physics]/Ocean", " Atmosphere", "04 agricultural and veterinary sciences", "15. Life on land", "Primary Research Articles", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "Carbon", "soil organic carbon", "[SDE.MCG] Environmental Sciences/Global Changes", "13. Climate action", "SOC saturation", "Feasibility Studies", "0401 agriculture", " forestry", " and fisheries", "France", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", "environment"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.15547"}, {"href": "https://doi.org/10.1111/gcb.15547"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.15547", "name": "item", "description": "10.1111/gcb.15547", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.15547"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-04-08T00:00:00Z"}}, {"id": "10.1097/ss.0b013e318285f59e", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:38Z", "type": "Journal Article", "created": "2013-02-16", "title": "Effects Of Permanent Raised Beds On Soil Chemical Properties In A Wheat-Maize Cropping System", "description": "Traditional tillage (TT) in the North China Plain has maintained grain productivity in the past 50 years. Nonetheless, it has also been a major contributor to global greenhouse gas emissions, biodiversity and soil fertility loss, soil degradation, and even desertification. Permanent raised beds (PRB) have been proposed as a viable solution to achieve sustainable farming in this plain. The effects on soil chemical properties of the PRB treatment and two other treatments, namely, no-tillage and TT treatments, were measured between 2005 and 2011 in the annual double cropping regions of the North China Plain. The soil properties significantly (P  1.35) were significantly (P < 0.05) higher than those under no-tillage and TT. In the cropping zone of PRB, the bulk density was significantly reduced by 14.4%, whereas soil organic carbon, total nitrogen, phosphorus, and potassium and available nitrogen, phosphorus, and potassium in the 0- to 10-cm soil layer were significantly increased by 24.8%, 78.8%, 121.9%, 81.8%, 46.2%, 7.0%, 2.9%, respectively, in comparison with those of TT treatments. Winter wheat and summer maize yields in PRB also underwent a slight increase. Permanent raised beds seem to be an improvement on current farming systems in the North China Plain and valuable for the sustainability of farming in this region.", "keywords": ["2. Zero hunger", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water", "12. Responsible consumption"]}, "links": [{"href": "https://doi.org/10.1097/ss.0b013e318285f59e"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1097/ss.0b013e318285f59e", "name": "item", "description": "10.1097/ss.0b013e318285f59e", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1097/ss.0b013e318285f59e"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-01-01T00:00:00Z"}}, {"id": "10.1098/rsfs.2010.0016", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:38Z", "type": "Journal Article", "created": "2012-01-05", "title": "Can Biofuels Be A Solution To Climate Change? The Implications Of Land Use Change-Related Emissions For Policy", "description": "<p>Biofuels have gained increasing attention as an alternative to fossil fuels for several reasons, one of which is their potential to reduce the greenhouse gas (GHG) emissions from the transportation sector. Recent studies have questioned the validity of claims about the potential of biofuels to reduce GHG emissions relative to the liquid fossil fuels they are replacing when emissions owing to direct (DLUC) and indirect land use changes (ILUC) that accompany biofuels are included in the life cycle GHG intensity of biofuels. Studies estimate that the GHG emissions released from ILUC could more than offset the direct GHG savings by producing biofuels and replacing liquid fossil fuels and create a \uffe2\uff80\uff98carbon debt\uffe2\uff80\uff99 with a long payback period. The estimates of this payback period, however, vary widely across biofuels from different feedstocks and even for a single biofuel across different modelling assumptions. In the case of corn ethanol, this payback period is found to range from 15 to 200 years. We discuss the challenges in estimating the ILUC effect of a biofuel and differences across biofuels, and its sensitivity to the assumptions and policy scenarios considered by different economic models. We also discuss the implications of ILUC for designing policies that promote biofuels and seek to reduce GHG emissions. In a first-best setting, a global carbon tax is needed to set both DLUC and ILUC emissions to their optimal levels. However, it is unclear whether unilateral GHG mitigation policies, even if they penalize the ILUC-related emissions, would increase social welfare and lead to optimal emission levels. In the absence of a global carbon tax, incentivizing sustainable land use practices through certification standards, government regulations and market-based pressures may be a viable option for reducing ILUC.</p>", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "13. Climate action", "11. Sustainability", "0202 electrical engineering", " electronic engineering", " information engineering", "02 engineering and technology", "15. Life on land", "01 natural sciences", "7. Clean energy", "0105 earth and related environmental sciences", "12. Responsible consumption"], "contacts": [{"organization": "Mairi J. Black, Madhu Khanna, Christine L. Crago, Christine L. Crago,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1098/rsfs.2010.0016"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/SSRN%20Electronic%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rsfs.2010.0016", "name": "item", "description": "10.1098/rsfs.2010.0016", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rsfs.2010.0016"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-01-01T00:00:00Z"}}, {"id": "10.1098/rsbl.2008.0373", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:38Z", "type": "Journal Article", "created": "2008-09-13", "title": "Methane Emissions By Alpine Plant Communities In The Qinghai-Tibet Plateau", "description": "<p>             For the first time to our knowledge, we report here methane emissions by plant communities in alpine ecosystems in the Qinghai\uffe2\uff80\uff93Tibet Plateau. This has been achieved through long-term field observations from June 2003 to July 2006 using a closed chamber technique. Strong methane emission at the rate of 26.2\uffc2\uffb11.2 and 7.8\uffc2\uffb11.1\uffe2\uff80\uff8a\uffce\uffbcg CH             4             m             \uffe2\uff88\uff922             \uffe2\uff80\uff8ah             \uffe2\uff88\uff921             was observed for a grass community in a             Kobresia humilis             meadow and a             Potentilla fruticosa             meadow, respectively. A shrub community in the             Potentilla             meadow consumed atmospheric methane at the rate of 5.8\uffc2\uffb11.3\uffe2\uff80\uff8a\uffce\uffbcg CH             4             m             \uffe2\uff88\uff922             \uffe2\uff80\uff8ah             \uffe2\uff88\uff921             on a regional basis; plants from alpine meadows contribute at least 0.13\uffe2\uff80\uff8aTg CH             4             yr             \uffe2\uff88\uff921             in the Tibetan Plateau. This finding has important implications with regard to the regional methane budget and species-level difference should be considered when assessing methane emissions by plants.           </p>", "keywords": ["13. Climate action", "Potentilla", "Cyperaceae", "Volatilization", "15. Life on land", "Tibet", "Methane", "01 natural sciences", "Ecosystem", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1098/rsbl.2008.0373"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rsbl.2008.0373", "name": "item", "description": "10.1098/rsbl.2008.0373", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rsbl.2008.0373"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-08-26T00:00:00Z"}}, {"id": "10.1098/rsfs.2010.0023", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:39Z", "type": "Journal Article", "created": "2011-07-12", "title": "How Can Land-Use Modelling Tools Inform Bioenergy Policies?", "description": "<p>Targets for bioenergy have been set worldwide to mitigate climate change. Although feedstock sources are often ambiguous, pledges in European nations, the United States and Brazil amount to more than 100 Mtoe of biorenewable fuel production by 2020. As a consequence, the biofuel sector is developing rapidly, and it is increasingly important to distinguish bioenergy options that can address energy security and greenhouse gas mitigation from those that cannot. This paper evaluates how bioenergy production affects land-use change (LUC), and to what extent land-use modelling can inform sound decision-making. We identified local and global internalities and externalities of biofuel development scenarios, reviewed relevant data sources and modelling approaches, identified sources of controversy about indirect LUC (iLUC) and then suggested a framework for comprehensive assessments of bioenergy. Ultimately, plant biomass must be managed to produce energy in a way that is consistent with the management of food, feed, fibre, timber and environmental services. Bioenergy production provides opportunities for improved energy security, climate mitigation and rural development, but the environmental and social consequences depend on feedstock choices and geographical location. The most desirable solutions for bioenergy production will include policies that incentivize regionally integrated management of diverse resources with low inputs, high yields, co-products, multiple benefits and minimal risks of iLUC. Many integrated assessment models include energy resources, trade, technological development and regional environmental conditions, but do not account for biodiversity and lack detailed data on the location of degraded and underproductive lands that would be ideal for bioenergy production. Specific practices that would maximize the benefits of bioenergy production regionally need to be identified before a global analysis of bioenergy-related LUC can be accomplished.</p>", "keywords": ["[SDV.SA]Life Sciences [q-bio]/Agricultural sciences", "0301 basic medicine", "MISCANTHUS", "330", "550", "AGRICULTURE", "01 natural sciences", "7. Clean energy", "333", "12. Responsible consumption", "ENERGY", "03 medical and health sciences", "ORGANIC-CARBON", "BENEFITS", "11. Sustainability", "feedstocks", "SWITCHGRASS", "indirect land-use change", "0105 earth and related environmental sciences", "2. Zero hunger", "[SDV.SA] Life Sciences [q-bio]/Agricultural sciences", "GREENHOUSE-GAS EMISSIONS", "CLIMATE-CHANGE", "15. Life on land", "biofuels", "NITROGEN", "greenhouse gas", "13. Climate action", "BIOFUEL FEEDSTOCK", "environmental economics", "ecosystem services"]}, "links": [{"href": "https://doi.org/10.1098/rsfs.2010.0023"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Interface%20Focus", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rsfs.2010.0023", "name": "item", "description": "10.1098/rsfs.2010.0023", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rsfs.2010.0023"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-02-02T00:00:00Z"}}, {"id": "10.1098/rstb.2011.0313", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:39Z", "type": "Journal Article", "created": "2012-03-26", "title": "The Role Of N2o Derived From Crop-Based Biofuels, And From Agriculture In General, In Earth'S Climate", "description": "<p>             In earlier work, we compared the amount of newly fixed nitrogen (N, as synthetic fertilizer and biologically fixed N) entering agricultural systems globally to the total emission of nitrous oxide (N             2             O). We obtained an N             2             O emission factor (EF) of 3\uffe2\uff80\uff935%, and applied it to biofuel production. For \uffe2\uff80\uff98first-generation\uffe2\uff80\uff99 biofuels, e.g. biodiesel from rapeseed and bioethanol from corn (maize), that require N fertilizer, N             2             O from biofuel production could cause (depending on N uptake efficiency) as much or more global warming as that avoided by replacement of fossil fuel by the biofuel. Our subsequent calculations in a follow-up paper, using published life cycle analysis (LCA) models, led to broadly similar conclusions. The N             2             O EF applies to agricultural crops in general, not just to biofuel crops, and has made possible a top-down estimate of global emissions from agriculture. Independent modelling by another group using bottom-up IPCC inventory methodology has shown good agreement at the global scale with our top-down estimate. Work by Davidson showed that the rate of accumulation of N             2             O in the atmosphere in the late nineteenth and twentieth centuries was greater than that predicted from agricultural inputs limited to fertilizer N and biologically fixed N (Davidson, E. A. 2009             Nat. Geosci             .             2             , 659\uffe2\uff80\uff93662.). However, by also including soil organic N mineralized following land-use change and NO                            x                          deposited from the atmosphere in our estimates of the reactive N entering the agricultural cycle, we have now obtained a good fit between the observed atmospheric N             2             O concentrations from 1860 to 2000 and those calculated on the basis of a 4 per cent EF for the reactive N.           </p>", "keywords": ["2. Zero hunger", "Air Pollutants", "330", "Climate", "Nitrous Oxide", "Agriculture", "15. Life on land", "Nitrification", "01 natural sciences", "7. Clean energy", "630", "Soil", "13. Climate action", "Biofuels", "Denitrification", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1098/rstb.2011.0313"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Philosophical%20Transactions%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rstb.2011.0313", "name": "item", "description": "10.1098/rstb.2011.0313", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rstb.2011.0313"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-05-05T00:00:00Z"}}, {"id": "10.1098/rstb.2012.0102", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:39Z", "type": "Journal Article", "created": "2012-10-08", "title": "Impact Of Grazing Intensity On Seasonal Variations In Soil Organic Carbon And Soil Co2 Efflux In Two Semiarid Grasslands In Southern Botswana", "description": "<p>             Biological soil crusts (BSCs) are an important source of organic carbon, and affect a range of ecosystem functions in arid and semiarid environments. Yet the impact of grazing disturbance on crust properties and soil CO             2             efflux remain poorly studied, particularly in African ecosystems. The effects of burial under wind-blown sand, disaggregation and removal of BSCs on seasonal variations in soil CO             2             efflux, soil organic carbon, chlorophyll             a             and scytonemin were investigated at two sites in the Kalahari of southern Botswana. Field experiments were employed to isolate CO             2             efflux originating from BSCs in order to estimate the C exchange within the crust. Organic carbon was not evenly distributed through the soil profile but concentrated in the BSC. Soil CO             2             efflux was higher in Kalahari Sand than in calcrete soils, but rates varied significantly with seasonal changes in moisture and temperature. BSCs at both sites were a small net sink of C to the soil. Soil CO             2             efflux was significantly higher in sand soils where the BSC was removed, and on calcrete where the BSC was buried under sand. The BSC removal and burial under sand also significantly reduced chlorophyll             a             , organic carbon and scytonemin             .             Disaggregation of the soil crust, however, led to increases in chlorophyll             a             and organic carbon. The data confirm the importance of BSCs for C cycling in drylands and indicate intensive grazing, which destroys BSCs through trampling and burial, will adversely affect C sequestration and storage. Managed grazing, where soil surfaces are only lightly disturbed, would help maintain a positive carbon balance in African drylands.           </p>", "keywords": ["Chlorophyll", "2. Zero hunger", "Conservation of Natural Resources", "Botswana", "Indoles", "Chlorophyll A", "Temperature", "Water", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "Poaceae", "Carbon", "Fires", "Carbon Cycle", "Soil", "Phenols", "13. Climate action", "Animals", "0401 agriculture", " forestry", " and fisheries", "Herbivory", "Seasons", "Desert Climate", "Ecosystem", "Soil Microbiology"], "contacts": [{"organization": "Andrew D. Thomas", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1098/rstb.2012.0102"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Philosophical%20Transactions%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rstb.2012.0102", "name": "item", "description": "10.1098/rstb.2012.0102", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rstb.2012.0102"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-11-19T00:00:00Z"}}, {"id": "10.1098/rstb.2017.0408", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:39Z", "type": "Journal Article", "created": "2018-10-08", "title": "Widespread reduction in sun-induced fluorescence from the Amazon during the 2015/2016 El Ni\u00f1o", "description": "<p>             The tropical carbon balance dominates year-to-year variations in the CO             2             exchange with the atmosphere through photosynthesis, respiration and fires. Because of its high correlation with gross primary productivity (GPP), observations of sun-induced fluorescence (SIF) are of great interest. We developed a new remotely sensed SIF product with improved signal-to-noise in the tropics, and use it here to quantify the impact of the 2015/2016 El Ni\uffc3\uffb1o\uffc2\uffa0Amazon drought. We find that SIF was strongly suppressed over areas with anomalously high temperatures and decreased levels of water in the soil. SIF went below its climatological range starting from the end of the 2015 dry season (October) and returned to normal levels by February 2016 when atmospheric conditions returned to normal, but well before the end of anomalously low precipitation that persisted through June 2016. Impacts were not uniform across the Amazon basin, with the eastern part experiencing much larger (10\uffe2\uff80\uff9315%) SIF reductions than the western part of the basin (2\uffe2\uff80\uff935%). We estimate the integrated loss of GPP relative to eight previous years to be 0.34\uffe2\uff80\uff930.48 PgC in the three-month period October\uffe2\uff80\uff93November\uffe2\uff80\uff93December 2015.           </p>           <p>This article is part of a discussion meeting issue \uffe2\uff80\uff98The impact of the 2015/2016 El Ni\uffc3\uffb1o on the terrestrial tropical carbon cycle: patterns, mechanisms and implications\uffe2\uff80\uff99.</p>", "keywords": ["0301 basic medicine", "FLUXES", "El Ni\u00f1o-Southern Oscillation", "Amazon rainforest", "sun-induced fluorescence", "El Ni\u00f1o Southern Oscillation", "drought response", "Forests", "SOUTHERN-OSCILLATION", "01 natural sciences", "Fluorescence", "Trees", "SCIAMACHY", "03 medical and health sciences", "GOME-2", "ATMOSPHERIC CARBON-DIOXIDE", "SATELLITE", "0105 earth and related environmental sciences", "El Nino-Southern Oscillation", "Amazone rainforest", "Articles", "15. Life on land", "tropical terrestrial carbon cycle", "gross primary production", "TERRESTRIAL CHLOROPHYLL FLUORESCENCE", "SIMULATIONS", "6. Clean water", "Droughts", "CLIMATE", "13. Climate action", "BALANCE", "Remote Sensing Technology", "Sunlight", "Brazil"]}, "links": [{"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rstb.2017.0408"}, {"href": "https://doi.org/10.1098/rstb.2017.0408"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Philosophical%20Transactions%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rstb.2017.0408", "name": "item", "description": "10.1098/rstb.2017.0408", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rstb.2017.0408"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-10-08T00:00:00Z"}}, {"id": "10.1098/rstb.2020.0169", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:39Z", "type": "Journal Article", "created": "2021-08-08", "title": "The role of soils in delivering Nature's Contributions to People", "description": "<p>             This theme issue provides an assessment of the contribution of soils to Nature's Contributions to People (NCP). The papers in this issue show that soils can contribute positively to the delivery of all NCP. These contributions can be maximized through careful soil management to provide healthy soils, but poorly managed, degraded or polluted soils may contribute negatively to the delivery of NCP. Soils are also shown to contribute positively to the UN Sustainable Development Goals. Papers in the theme issue emphasize the need for careful soil management. Priorities for soil management must include: (i) for healthy soils in natural ecosystems,             protect             them from conversion and degradation, (ii) for managed soils,             manage             in a way to protect and enhance soil biodiversity, health, productivity and sustainability and to prevent degradation, and (iii) for degraded soils,             restore             to full soil health. Our knowledge of what constitutes sustainable soil management is mature enough to implement best management practices, in order to maintain and improve soil health. The papers in this issue show the vast potential of soils to contribute to NCP. This is not only desirable, but essential to sustain a healthy planet and if we are to deliver sustainable development in the decades to come.           </p>           <p>This article is part of the theme issue \uffe2\uff80\uff98The role of soils in delivering Nature\uffe2\uff80\uff99s Contributions to People\uffe2\uff80\uff99.</p", "keywords": ["Conservation of Natural Resources", "Biomedical and clinical sciences", "330", "Life on Land", "QH301 Biology", "General Biochemistry", "Genetics and Molecular Biology", "Medical and Health Sciences", "soil", "12. Responsible consumption", "QH301", "Soil", "11. Sustainability", "774378", "Humans", "European Commission", "Ecosystem", "2. Zero hunger", "Evolutionary Biology", "Biomedical and Clinical Sciences", "soil health", "Biodiversity", "04 agricultural and veterinary sciences", "Biological Sciences", "15. Life on land", "Biological sciences", "Nature's Contributions to People", "13. Climate action", "NCP", "0401 agriculture", " forestry", " and fisheries", "General Agricultural and Biological Sciences"]}, "links": [{"href": "https://escholarship.org/content/qt2ht9h1mh/qt2ht9h1mh.pdf"}, {"href": "https://doi.org/10.1098/rstb.2020.0169"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Philosophical%20Transactions%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rstb.2020.0169", "name": "item", "description": "10.1098/rstb.2020.0169", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rstb.2020.0169"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-08-04T00:00:00Z"}}, {"id": "10.1098/rstb.2020.0185", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:40Z", "type": "Journal Article", "created": "2021-08-08", "title": "Soil-derived Nature's Contributions to People and their contribution to the UN Sustainable Development Goals", "description": "<p>This special issue provides an assessment of the contribution of soils to Nature's Contributions to People (NCP). Here, we combine this assessment and previously published relationships between NCP and delivery on the UN Sustainable Development Goals (SDGs) to infer contributions of soils to the SDGs. We show that in addition to contributing positively to the delivery of all NCP, soils also have a role in underpinning all SDGs. While highlighting the great potential of soils to contribute to sustainable development, it is recognized that poorly managed, degraded or polluted soils may contribute negatively to both NCP and SDGs. The positive contribution, however, cannot be taken for granted, and soils must be managed carefully to keep them healthy and capable of playing this vital role. A priority for soil management must include: (i) for healthy soils in natural ecosystems,protectthem from conversion and degradation; (ii) for managed soils,managein a way to protect and enhance soil biodiversity, health and sustainability and to prevent degradation; and (iii) for degraded soils, restore to full soil health. We have enough knowledge now to move forward with the implementation of best management practices to maintain and improve soil health. This analysis shows that this is not just desirable, it is essential if we are to meet the SDG targets by 2030 and achieve sustainable development more broadly in the decades to come.</p><p>This article is part of the theme issue \uffe2\uff80\uff98The role of soils in delivering Nature's Contributions to People\uffe2\uff80\uff99.</p", "keywords": ["570", "Conservation of Natural Resources", "Biomedical and clinical sciences", "330", "United Nations", "Supplementary Data", "Life on Land", "QH301 Biology", "Sustainable Development Goals", "SDG", "910", "Medical and Health Sciences", "01 natural sciences", "soil", "12. Responsible consumption", "QH301", "Soil", "11. Sustainability", "774378", "Humans", "NE/P01982X/2", "European Commission", "SDG 3", "0105 earth and related environmental sciences", "2. Zero hunger", "Evolutionary Biology", "GE", "Biomedical and Clinical Sciences", "soil health", "Natural Environment Research Council (NERC)", "04 agricultural and veterinary sciences", "Biological Sciences", "Sustainable Development", "15. Life on land", "sustainable development goals", "6. Clean water", "Biological sciences", "Nature's Contribution to People", "Nature's Contributions to People", "13. Climate action", "NCP", "0401 agriculture", " forestry", " and fisheries", "nature\u2019s contributions to people", "GE Environmental Sciences"]}, "links": [{"href": "https://eprints.lancs.ac.uk/id/eprint/160038/1/Smith_PTRSB_preprint.pdf"}, {"href": "https://escholarship.org/content/qt2p2235pf/qt2p2235pf.pdf"}, {"href": "https://doi.org/10.1098/rstb.2020.0185"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Philosophical%20Transactions%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rstb.2020.0185", "name": "item", "description": "10.1098/rstb.2020.0185", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rstb.2020.0185"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-08-04T00:00:00Z"}}, {"id": "10.1099/mgen.0.000363", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:40Z", "type": "Journal Article", "created": "2020-04-02", "title": "Analysis of the biodegradative and adaptive potential of the novel polychlorinated biphenyl degrader Rhodococcus sp. WAY2 revealed by its complete genome sequence", "description": "<p>The complete genome sequence of                                                Rhodococcus                                          sp. WAY2 (WAY2) consists of a circular chromosome, three linear replicons and a small circular plasmid. The linear replicons contain typical actinobacterial invertron-type telomeres with the central CGTXCGC motif. Comparative phylogenetic analysis of the 16S rRNA gene along with phylogenomic analysis based on the genome-to-genome blast distance phylogeny (GBDP) algorithm and digital DNA\uffe2\uff80\uff93DNA hybridization (dDDH) with other                                                Rhodococcus                                          type strains resulted in a clear differentiation of WAY2, which is likely a new species. The genome of WAY2 contains five distinct clusters of bph, etb and nah genes, putatively involved in the degradation of several aromatic compounds. These clusters are distributed throughout the linear plasmids. The high sequence homology of the ring-hydroxylating subunits of these systems with other known enzymes has allowed us to model the range of aromatic substrates they could degrade. Further functional characterization revealed that WAY2 was able to grow with biphenyl, naphthalene and xylene as sole carbon and energy sources, and could oxidize multiple aromatic compounds, including ethylbenzene, phenanthrene, dibenzofuran and toluene. In addition, WAY2 was able to co-metabolize 23 polychlorinated biphenyl congeners, consistent with the five different ring-hydroxylating systems encoded by its genome. WAY2 could also use n-alkanes of various chain-lengths as a sole carbon source, probably due to the presence of alkB and ladA gene copies, which are only found in its chromosome. These results show that WAY2 has a potential to be used for the biodegradation of multiple organic compounds.</p", "keywords": ["0301 basic medicine", "0303 health sciences", "PCB", "Whole Genome Sequencing", "AlkB Enzymes", "Rhodococcus; biodegradation; PAH; PCB; hydrocarbons; complete genome", "High-Throughput Nucleotide Sequencing", "PAH", "Naphthalenes", "Xylenes", "Biolog\u00eda y Biomedicina / Biolog\u00eda", "biodegradation", "Polychlorinated Biphenyls", "Hydrocarbons", "Complete genome", "03 medical and health sciences", "Biodegradation", " Environmental", "RNA", " Ribosomal", " 16S", "Biodegradation", "Cluster Analysis", "Rhodococcus", "Phylogeny", "Research Article"]}, "links": [{"href": "https://doi.org/10.1099/mgen.0.000363"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Genomics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1099/mgen.0.000363", "name": "item", "description": "10.1099/mgen.0.000363", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1099/mgen.0.000363"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-01T00:00:00Z"}}, {"id": "10.1108/00070700910992925", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:43Z", "type": "Journal Article", "created": "2009-10-05", "title": "A meta-analysis of the differences in environmental impacts between organic and conventional farming", "description": "Purpose<p>This paper aims to perform a meta\uffe2\uff80\uff90analysis of the literature comparing the environmental impacts of organic and conventional farming and linking these to differences in management practises. The studied environmental impacts are related to land use efficiency, organic matter content in the soil, nitrate and phosphate leaching to the water system, greenhouse gas emissions and biodiversity.</p>Design/methodology/approach<p>The theoretic framework uses the driver\uffe2\uff80\uff90state\uffe2\uff80\uff90response framework and literature data were analysed using meta\uffe2\uff80\uff90analysis methodology. Meta\uffe2\uff80\uff90analysis is the statistical analysis of multiple study results. Data were obtained by screening peer reviewed literature.</p>Findings<p>From the paper's meta\uffe2\uff80\uff90analysis it can conclude that soils in organic farming systems have on average a higher content of organic matter. It can also conclude that organic farming contributes positively to agro\uffe2\uff80\uff90biodiversity (breeds used by the farmers) and natural biodiversity (wild life). Concerning the impact of the organic farming system on nitrate and phosphorous leaching and greenhouse gas emissions the result of the analysis is not that straightforward. When expressed per production area organic farming scores better than conventional farming for these items. However, given the lower land use efficiency of organic farming in developed countries, this positive effect expressed per unit product is less pronounced or not present at all.</p>Original value<p>Given the recent growth of organic farming and the general perception that organic farming is more environment friendly than its conventional counterpart, it is interesting to explore whether it meets the alleged benefits. By combining several studies in one analysis, the technique of meta\uffe2\uff80\uff90analysis is powerful and may allow the generation of more nuanced findings and the generalisation of those findings.</p>", "keywords": ["Agriculture and Food Sciences", "2. Zero hunger", "GREENHOUSE-GAS EMISSIONS", "Environmental management", "NEW-ZEALAND", "CROPPING SYSTEMS", "NITROUS-OXIDE", "SOUTHERN GERMANY", "Agriculture", "SOIL QUALITY INDICATORS", "04 agricultural and veterinary sciences", "MODELING APPROACH", "15. Life on land", "7. Clean energy", "Organic foods", "12. Responsible consumption", "Europe", "13. Climate action", "LEACHING LOSSES", "PHOSPHORUS P", "11. Sustainability", "0401 agriculture", " forestry", " and fisheries", "LONG-TERM CHANGES"], "contacts": [{"organization": "Mondelaers, Koen, Aertsens, Joris, Van Huylenbroeck, Guido,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1108/00070700910992925"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/British%20Food%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1108/00070700910992925", "name": "item", "description": "10.1108/00070700910992925", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1108/00070700910992925"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-09-26T00:00:00Z"}}, {"id": "10.1101/2021.10.19.464992", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:41Z", "type": "Report", "created": "2021-10-20", "title": "Valuation of carbon services produced by wild animals finances conservation", "description": "Abstract<p>Filling the global biodiversity financing gap will require significant investments from financial markets, which demand credible valuations of ecosystem services and natural capital. However, current valuation approaches discourage investment in conservation because their results cannot be verified using market-determined prices. Here, we bridge the gap between finance and conservation by valuing only wild animals\uffe2\uff80\uff99 carbon services for which market prices exist. By projecting the future path of carbon service production using a spatially-explicit demographic model, we place a credible value on the carbon-capture services produced by African forest elephants. If elephants were protected, their services would be worth $35.9 billion (24.3-41.2) and store 377 MtC (318-388) across tropical Africa. Our methodology can also place lower bounds on the social cost of nature degradation. Poaching would result in $10-14 billion of lost carbon services. Our methodology enables the integration of animal services into global financial markets with major implications for conservation, local socio-economies, and conservation.</p", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "13. Climate action", "11. Sustainability", "1. No poverty", "15. Life on land"], "contacts": [{"organization": "Fabio Berzaghi, Ralph Chami, Thomas Cosimano, Connel Fullenkamp,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1101/2021.10.19.464992"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/2021.10.19.464992", "name": "item", "description": "10.1101/2021.10.19.464992", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/2021.10.19.464992"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-20T00:00:00Z"}}, {"id": "10.1101/2022.12.02.518905", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:41Z", "type": "Journal Article", "created": "2022-12-04", "title": "Highly diverse and unknown viruses may enhance Antarctic endoliths\u2019 adaptability", "description": "Abstract<p>Rock-dwelling microorganisms are key players in ecosystem functioning of Antarctic ice free-areas. Yet, little is known about their diversity and ecology. Here, we performed metagenomic analyses on rocks from across Antarctica comprising &gt;75,000 viral operational taxonomic units (vOTUS). We found largely undescribed, highly diverse and spatially structured virus communities potentially influencing bacterial adaptation and biogeochemistry. This catalog lays the foundation for expanding knowledge of the virosphere in extreme environments.</p", "keywords": ["0301 basic medicine", "570", "0303 health sciences", "Ecology", "Brief Report", "Acclimatization", "Climate", "Microbiota", "QR100-130", "500", "Antarctic Regions", "Evolutionary biology", "15. Life on land", "Biological Sciences", "Microbiology", "Bicycling", "Microbial ecology", "03 medical and health sciences", "13. Climate action", "Medical Microbiology", "XXXXXX - Unknown", "2.2 Factors relating to the physical environment", "14. Life underwater", "Infection", "Settore BIO/19 - MICROBIOLOGIA GENERALE"]}, "links": [{"href": "https://openpub.fmach.it/bitstream/10449/83877/1/2023%20M%20Donati.pdf"}, {"href": "https://escholarship.org/content/qt65p0p1x8/qt65p0p1x8.pdf"}, {"href": "https://doi.org/10.1101/2022.12.02.518905"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/2022.12.02.518905", "name": "item", "description": "10.1101/2022.12.02.518905", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/2022.12.02.518905"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-12-03T00:00:00Z"}}, {"id": "10.1101/2023.10.03.560709", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:41Z", "type": "Journal Article", "created": "2023-10-04", "title": "Bacteria face trade-offs in the decomposition of complex biopolymers", "description": "Abstract<p>Although depolymerization of complex carbohydrates is a growth-limiting bottleneck for microbial decomposers, we still lack understanding about how the production of different types of extracellular enzymes affect individual microbes and in turn the performance of whole decomposer communities. In this work we use a theoretical model to evaluate the potential trade-offs faced by microorganisms in biopolymer decomposition which arise due to the varied biochemistry of different depolymerizing enzyme classes. We specifically consider two broad classes of depolymerizing extracellular enzymes, which are widespread across microbial taxa: exo-enzymes that cleave small units from the ends of polymer chains and endo-enzymes that act at random positions generating degradation products of varied sizes. Our results demonstrate a fundamental trade-off in the production of these enzymes, which is independent of system\uffe2\uff80\uff99s complexity and which appears solely from the intrinsically different temporal depolymerization dynamics. As a consequence, specialists that produce either exo- or only endo-enzymes limit their growth to high or low substrate conditions, respectively. Conversely, generalists that produce both enzymes in an optimal ratio expand their niche and benefit from the synergy between the two enzymes. Finally, our results show that, in spatially-explicit environments, consortia composed of endo- and exo-specialists can only exist under oligotrophic conditions. In summary, our analysis demonstrates that the (evolutionary or ecological) selection of a depolymerization pathway will affect microbial fitness under low- or high substrate conditions, with impacts on the ecological dynamics of microbial communities. It provides a possible explanation why many polysaccharide degraders in nature show the genetic potential to produce both of these enzyme classes.</p>Author summary<p>The decomposition of polysaccharides by microbes is a key process in the global carbon cycle. It requires the joint action of a variety of microbially-produced extracellular enzymes. They can be broadly classified into endo-enzymes, that act in the middle of polymers, and exo-enzymes, that cleave units from polymer ends. Little is known about the benefits for microbes producing a certain enzyme type and the interplay between enzyme producing strategies in mixed communities. This hampers our comprehensive understanding of decomposition in terrestrial and marine ecosystems and thus limits the prediction of decomposition processes, for example in a changing climate.</p><p>Based on theoretical modelling, we revealed a fundamental trade-off in the action of these enzymes. While exo-enzymes are more efficient at high substrate conditions, endo-enzymes perform better when substrate is low. Generalists producing both enzymes expand their ecological niche of substrate availability compared to specialists only producing one of the two types. Complementary specialists only co-exist in oligotrophic conditions. We conclude that producing enzymes for specific steps within polymer degradation represents relevant ecological strategies for microbes in decomposer communities.</p", "keywords": ["2. Zero hunger", "106022 Mikrobiologie", "decomposition", "Bacteria", "Polymers", "QH301-705.5", "complex biopolymers", "Monomers", "Computational Biology", "Chitin", "Models", " Biological", "Enzymes", "Biopolymers", "Consortia", "106026 \u00d6kosystemforschung", "Oligomers", "106022 Microbiology", "14. Life underwater", "Biology (General)", "106026 Ecosystem research", "bacteria", "Depolymerization", "Research Article"]}, "links": [{"href": "https://doi.org/10.1101/2023.10.03.560709"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20Computational%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/2023.10.03.560709", "name": "item", "description": "10.1101/2023.10.03.560709", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/2023.10.03.560709"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-10-03T00:00:00Z"}}, {"id": "10.1101/2024.05.03.592357", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:41Z", "type": "Journal Article", "created": "2025-06-27", "title": "The evolutionary history and functional specialization of microRNA genes inArabidopsis halleriandA. lyrata", "description": "Abstract                <p>MicroRNAs (miRNAs) are a class of small non-coding RNAs that play important regulatory roles in plant genomes. While some miRNA genes are deeply conserved, the majority appear to be species-specific, raising the question of how they emerge and integrate into cellular regulatory networks. To address this question, we first performed a detailed annotation of miRNA genes in the closely related Arabidopsis halleri and A. lyrata, then evaluated their phylogenetic conservation across 87 plant species. We then characterized the process by which newly emerged miRNA genes progressively acquire the properties of \uffe2\uff80\uff9ccanonical\uffe2\uff80\uff9d miRNA genes, in terms of size and stability of the hairpin precursor, loading of their cleavage products into Argonaute proteins, and potential to regulate downstream target genes. Analysis of nucleotide polymorphism distribution along the hairpin sequence (stem, mature miRNA, terminal loop) revealed that the selective constraints on recently emerged miRNA genes were initially weak, gradually increasing toward evolutionarily conserved miRNA genes. Our results illustrate the rapid birth-and-death of miRNA genes in plant genomes, and provide a detailed picture of the evolutionary progression toward canonical miRNAs by which a small fraction of de novo formed miRNA genes eventually integrate into \uffe2\uff80\uff9ccore\uffe2\uff80\uff9d biological processes.</p", "keywords": ["[SDV] Life Sciences [q-bio]", "0301 basic medicine", "arabidopsis", "0303 health sciences", "03 medical and health sciences", "microRNA", "evolution", "species-specific genes", "[SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry", " Molecular Biology/Genomics [q-bio.GN]", "15. Life on land", "polymorphism", "[SDV.BV.BOT] Life Sciences [q-bio]/Vegetal Biology/Botanics"]}, "links": [{"href": "https://doi.org/10.1101/2024.05.03.592357"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Plant%20Cell", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/2024.05.03.592357", "name": "item", "description": "10.1101/2024.05.03.592357", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/2024.05.03.592357"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-05-05T00:00:00Z"}}, {"id": "10.1101/523977", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-04-03T16:19:42Z", "type": "Report", "created": "2019-05-24", "title": "Seasonal microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments", "description": "Abstract<p>Winemakers have long used copper as a fungicide on grapevine. However, the potential of copper to accumulate on soil and affect the biota poses a challenge to achieving sustainable agriculture. One recently developed option is the use of biocontrol agents to replace or complement traditional methods. In the present study, a field experiment was conducted in South Africa in which the leaves in two blocks of a vineyard were periodically treated with either copper sulphate or sprayed withLactobacillus plantarumMW-1 as a biocontrol agent. This study evaluated the impact of the two treatments on the bacterial and fungal communities as they changed during the growing season. To do this, NGS was combined with quantitative strain-specific and community qPCRs. The results revealed the progression of the microbial communities throughout the season and how the different treatments affected the microbiota. Bacteria appeared to be relatively stable at the different time points, with the only taxa that systematically changed between treatments beingLactobacillaceae, which included reads from the biocontrol agent. Cells ofLactobacillus plantarumMW-1 were only detected on treated leaves using strain-specific qPCR, with its amount spanning from 103to 105cells/leaves. Conversely the fungal community was largely shaped by a succession of different dominant taxa over the months. Between treatments, only a few fungal taxa appeared to change significantly and the number of ITS copies was also comparable. In this regards, the two treatments seemed to affect the microbial community similarly, revealing the potential of this biocontrol strain as a promising alternative among sustainable fungicide treatments, although further investigation is required.</p>", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "03 medical and health sciences", "15. Life on land", "6. Clean water", "12. Responsible consumption"], "contacts": [{"organization": "Alex, Gobbi, Ifigeneia, Kyrkou, Elisa, Filippi, Lea, Ellegaard-Jensen, Hestbjerg, Hansen Lars,", "roles": ["creator"]}]}, "links": [{"href": "https://www.biorxiv.org/content/10.1101/523977v1.full.pdf"}, {"href": "https://doi.org/10.1101/523977"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/523977", "name": "item", "description": "10.1101/523977", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/523977"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-01-18T00:00:00Z"}}, {"id": "10.1101/728261", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:42Z", "type": "Journal Article", "created": "2020-05-29", "title": "\"Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, \\\"\"Silenusvirus\\\"\".\"", "description": "Abstract<p>Bacteria of Lactobacillus sp. are very useful to humans. However, the biology and genomic diversity of their (bacterio)phage enemies remains understudied. Knowledge on Lactobacillus phage diversity should broaden to develop efficient phage control strategies. To this end, organic waste samples were screened for phages against two wine-related Lactobacillus plantarum strains. Isolates were shotgun sequenced and compared against the phage database and each other by phylogenetics and comparative genomics. The new isolates had only three distant relatives from the database, but displayed a high overall degree of genomic similarity amongst them. The latter allowed for the use of one isolate as a representative to conduct transmission electron microscopy and structural protein sequencing, and to study phage adsorption and growth kinetics. The microscopy and proteomics tests confirmed the observed diversity of the new isolates and supported their classification to the family Siphoviridae and the proposal of the new phage genus \uffe2\uff80\uff9cSilenusvirus\uffe2\uff80\uff9d.</p>", "keywords": ["0301 basic medicine", "0303 health sciences", "FRAMESHIFT", "Denmark", "BACTERIOPHAGES", "PROTEIN", "Wine", "Genome", " Viral", "Viral Plaque Assay", "SEQUENCE", "CLASSIFICATION", "Article", "12. Responsible consumption", "Microscopy", " Electron", "Waste Disposal Facilities", "03 medical and health sciences", "Bacteriolysis", "Species Specificity", "DNA", " Viral", "Bacteriophages", "Adsorption", "Phylogeny", "Lactobacillus plantarum"]}, "links": [{"href": "https://www.biorxiv.org/content/10.1101/728261v1.full.pdf"}, {"href": "https://doi.org/10.1101/728261"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Scientific%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/728261", "name": "item", "description": "10.1101/728261", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/728261"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-08-07T00:00:00Z"}}, {"id": "10.1103/physrevlett.123.033901", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:43Z", "type": "Journal Article", "created": "2019-07-15", "title": "Spontaneous Emission and Resonant Scattering in Transition from Type I to Type II Photonic Weyl Systems", "description": "Spontaneous emission and scattering behavior of an emitter or a resonant scatterer strongly depend on the density of states of the surrounding medium. It has been shown that the resonant scattering cross section (RSC) may diverge at the Weyl frequency of a type I Weyl system due to the diminishing density of states. Here we study the spontaneous emission (SE) and RSC in a photonic metacrystal across the critical transition between type I and type IIWeyl systems. Theoretical results show that the SE rate of an emitter in a type I Weyl system diminishes to zero at the Weyl frequency. When the system is tuned towards the transition point between type I and type II Weyl point, the dip in the SE spectrum at the Weyl frequency becomes infinitely sharp. The dip vanishes at the critical transition, and transforms into a peak when the system changes into a type II Weyl system. We further show that the resonant scattering cross section also exhibits dramatically different spectral features across the transition. Our study demonstrates the ability to tune SE and RSC through altering the dispersion of the Weyl medium between type I and type II, which provides a fundamentally new route in manipulating light-matter interactions.", "keywords": ["0103 physical sciences", "metamaterials; topological", "01 natural sciences"]}, "links": [{"href": "https://doi.org/10.1103/physrevlett.123.033901"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Physical%20Review%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1103/physrevlett.123.033901", "name": "item", "description": "10.1103/physrevlett.123.033901", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1103/physrevlett.123.033901"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-07-15T00:00:00Z"}}, {"id": "10.1108/14777831311291122", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:43Z", "type": "Journal Article", "created": "2012-12-18", "title": "Assessing Environmental Impacts Of Biofuels Using Lifecycle\u2010Based Approaches", "description": "Purpose \u2013 The purpose of this paper is to inform decision makers about the data and information generated by commonly\u2010used, holistic environmental assessment approaches.Design/methodology/approach \u2013 Descriptions of eight types of lifecycle\u2010based methods are provided: Carbon/Greenhouse Gas (GHG) Management, Ecological Footprint, Energy Assessments, Fuel Cycle Analysis, Life Cycle Assessment (LCA), Life Cycle Risk Management (LCRM), Material Flow Analysis (MFA), and Sustainability Indicators. Example assessments of bio\u2010based products are provided because of the current environmental and socio\u2010economic relevance of bio\u2010feedstocks.Findings \u2013 Assessment methods that focus on single impact indicators, such as air emissions (Carbon Management and Fuel Cycle Analysis) and energy, typically show biofuels in a favorable light compared to conventional gasoline (petrol). Ecological Footprint addresses land use implications; LCRM addresses possible impacts to human and ecological health due to chemical contaminant exp...", "keywords": ["13. Climate action", "11. Sustainability", "7. Clean energy", "01 natural sciences", "12. Responsible consumption", "0105 earth and related environmental sciences"], "contacts": [{"organization": "Mary Ann Curran", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1108/14777831311291122"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Management%20of%20Environmental%20Quality%3A%20An%20International%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1108/14777831311291122", "name": "item", "description": "10.1108/14777831311291122", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1108/14777831311291122"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-12-28T00:00:00Z"}}, {"id": "10.1104/pp.18.01546", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:43Z", "type": "Journal Article", "created": "2019-06-04", "title": "Abscisic Acid Coordinates Dose-Dependent Developmental and Hydraulic Responses of Roots to Water Deficit.", "description": "Root water uptake is influenced by root system architecture, which is determined by root growth and branching and the hydraulics of root cells and tissues. The phytohormone abscisic acid (ABA) plays a major role in the adaptation of plants to water deficit (WD). Here we addressed at the whole-root level in Arabidopsis (Arabidopsis thaliana) the regulatory role of ABA in mechanisms that determine root hydraulic architecture. Root system architecture and root hydraulic conductivity (Lpr) were analyzed in hydroponically grown plants subjected to varying degrees of WD induced by various polyethylene glycol (PEG) concentrations. The majority of root traits investigated, including first- and second-order lateral root production and elongation and whole-root hydraulics, had a bell-shaped dependency on WD, displaying stimulation under mild WD conditions (25 g PEG L-1) and repression under more severe conditions. These traits also showed a bell-shaped dependency on exogenous ABA, and their regulation by WD was attenuated in genotypes altered in ABA biosynthesis and response. Thus, we propose that ABA acts as a coordinator and an integrator of most root responses to mild and moderate WD, whereas responses to strong WD (150 g PEG L-1) are largely ABA independent. We also found that roots exhibit different growth responses to both WD and ABA depending on their rank and age. Taken together, our results give further insights into the coordinated water acquisition strategies of roots deployed in relation to WD intensity.", "keywords": ["580", "2. Zero hunger", "0301 basic medicine", "0303 health sciences", "[SDV]Life Sciences [q-bio]", "Water", "15. Life on land", "Plant Roots", "6. Clean water", "Polyethylene Glycols", "[SDV] Life Sciences [q-bio]", "03 medical and health sciences", "Gene Expression Regulation", " Plant", "[SDV.BV]Life Sciences [q-bio]/Vegetal Biology", "[SDV.BV] Life Sciences [q-bio]/Vegetal Biology", "Abscisic Acid"]}, "links": [{"href": "https://hal.science/hal-02139355/file/Rosales-A.M.-et%20al-PostPrint-PlantPhysiol-2019.pdf"}, {"href": "https://doi.org/10.1104/pp.18.01546"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1104/pp.18.01546", "name": "item", "description": "10.1104/pp.18.01546", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1104/pp.18.01546"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-06-04T00:00:00Z"}}, {"id": "10.1109/aero55745.2023.10115851", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:44Z", "type": "Journal Article", "created": "2023-05-15", "title": "Performance and Early Results from the Earth Surface Mineral Dust Source Investigation (EMIT) Imaging Spectroscopy Mission", "description": "RestrictedThe authors gratefully acknowledge all the elements of the National Aeronautics and Space Administration, our partners, and the science community who have contributed to the development of the EMIT mission. EMIT is supported by the National Aeronautics and Space Administration Earth Venture Instrument Program under the Earth Science Division of the Science Mission Directorate. This research was performed at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration.", "keywords": ["Mineral dusts", "550", "500", "15. Life on land", "7. Clean energy", "Spectrometer", "3. Good health", "Earth (Planet)--Surface", "Espect\u00f2metres", "13. Climate action", "Terra (Planeta)--Superf\u00edcie", "11. Sustainability", "\u00c0rees tem\u00e0tiques de la UPC::F\u00edsica::Astronomia i astrof\u00edsica", "14. Life underwater", "Pols minerals"]}, "links": [{"href": "http://xplorestaging.ieee.org/ielx7/10115529/10115530/10115851.pdf?arnumber=10115851"}, {"href": "https://doi.org/10.1109/aero55745.2023.10115851"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2023%20IEEE%20Aerospace%20Conference", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1109/aero55745.2023.10115851", "name": "item", "description": "10.1109/aero55745.2023.10115851", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1109/aero55745.2023.10115851"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-03-04T00:00:00Z"}}, {"id": "10.1109/JSTSP.2021.3054314", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:44Z", "type": "Journal Article", "created": "2021-01-25", "title": "Tensor Decomposition Learning for Compression of Multidimensional Signals", "description": "Multidimensional signals like multispectral images and color videos are becoming ubiquitous in modern times, constantly introducing challenges in data storage and transfer, and therefore demanding efficient compression strategies. Such high dimensional observations can be naturally encoded as tensors, exhibiting significant redundancies across dimensions. This property is exploited by tensor decomposition techniques that are being increasingly used for compactly encoding large multidimensional arrays. While efficient, these methods are incapable of utilizing prior information present in training data. In this paper, a novel tensor decomposition learning method is proposed for the compression of high dimensional signals. Specifically, instead of extracting independent bases for each example, our method learns an appropriate basis for each dimension from a set of training samples by solving a constrained optimization problem. As such, each sample is quantized and encoded into a reduced-size core tensor of coefficients that corresponds to the multilinear combination of the learned basis matrices. Furthermore, the proposed method employs a symbol encoding dictionary for binarizing the decomposition outputs. Experimental results on synthetic data and real satellite multispectral image sequences demonstrate the efficacy of our method, surpassing competing compression methods while offering the flexibility to handle arbitrary high dimensional data structures.", "keywords": ["Signal Processing", "Mathematical analysis", "0211 other engineering and technologies", "0202 electrical engineering", " electronic engineering", " information engineering", "Tensor decomposition", "02 engineering and technology", "Electrical and Electronic Engineering", "Compression (physics)", "Mathematics"]}, "links": [{"href": "http://xplorestaging.ieee.org/ielx7/4200690/9393360/09335033.pdf?arnumber=9335033"}, {"href": "https://doi.org/10.1109/JSTSP.2021.3054314"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/IEEE%20Journal%20of%20Selected%20Topics%20in%20Signal%20Processing", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1109/JSTSP.2021.3054314", "name": "item", "description": "10.1109/JSTSP.2021.3054314", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1109/JSTSP.2021.3054314"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-04-01T00:00:00Z"}}, {"id": "10.1109/JURSE.2017.7924592", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:44Z", "type": "Journal Article", "created": "2017-05-12", "title": "EO-based products in support of urban heat fluxes estimation", "description": "Presently, there is a growing need for information suitable to effectively characterize the Urban Energy Budget (UEB) and, hence, to properly estimate the magnitude of the anthropogenic heat flux Q F . Indeed, a precise knowledge of Q F  - whose implications for urban planners are still prone to large uncertainties - is fundamental for implementing effective strategies to improve thermal comfort and energy efficiency. To address this challenging issue, the Horizon 2020 URBANFLUXES project aims at developing a novel methodology for accurately estimating the different terms of the UEB based on the use of Earth Observation (EO) data and, hence, at reliably characterizing the Q F  spatiotemporal patterns and its implications on urban climate. In this paper, we aim at giving an overview of the EO-based products which have been identified as the most useful in the framework of the considered study. In particular, the suite which has been implemented so far in the first phase of the project includes biophysical parameters, morphology parameters as well as land-cover maps.", "keywords": ["Anthropogenic Heat Flux", "H2020 URBANFLUXES", "13. Climate action", "11. Sustainability", "0211 other engineering and technologies", "Earth Observation", "Urban Remote Sensing", "02 engineering and technology", "01 natural sciences", "7. Clean energy", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://xplorestaging.ieee.org/ielx7/7919506/7924526/07924592.pdf?arnumber=7924592"}, {"href": "https://doi.org/10.1109/JURSE.2017.7924592"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2017%20Joint%20Urban%20Remote%20Sensing%20Event%20%28JURSE%29", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1109/JURSE.2017.7924592", "name": "item", "description": "10.1109/JURSE.2017.7924592", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1109/JURSE.2017.7924592"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-03-01T00:00:00Z"}}, {"id": "10.1109/PLANS46316.2020.9109895", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:44Z", "type": "Journal Article", "created": "2020-06-08", "title": "Approach for Autonomous Robot Navigation in Greenhouse Environment for Integrated Pest Management", "description": "The use of autonomous robots for certain tasks within agriculture applications can bring many advantages. The H2020-funded GreenPatrol project has developed an autonomous system for pest detection and treatment within commercial greenhouses. In this system the robot will navigate autonomously and regularly inspect crops using an array of cameras and algorithms to detect and treat pests at an early stage in order to improve yield, reduce pesticide use and improve worker conditions. A key enabler for this application is the localization and navigation function of the robot platform. In order to operate independently and autonomously, the robot must know in real-time its precise location and direction of pointing, it must be able to plan a route through the greenhouse from its current location to where it needs to go, it must be able to control its movements to reach its required destination, and it must be able to identify and avoid obstacles that may obstruct its route. In order to achieve these goals the robot sub-systems include an absolute localization function, to provide precise absolute position and heading in a global reference frame in real-time, a relative localization function, to provide more fidelity of the exact location and orientation of the robot with respect to its surroundings in the greenhouse, and a navigation function, to plan the route through the greenhouse and provide movement instructions to the robot platform. This paper describes the localization system of the GreenPatrol robot and presents results of testing for each of the functions. The tests include simulations as well as data collections and tests of the real-time system using the robot platform. The results show the high performance of the positioning capability and heading information for the individual systems.", "keywords": ["0209 industrial biotechnology", "GNSS", "Galileo", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "02 engineering and technology", "Precise positioning", "Autonomous navigation"]}, "links": [{"href": "http://xplorestaging.ieee.org/ielx7/9102203/9109801/09109895.pdf?arnumber=9109895"}, {"href": "https://doi.org/10.1109/PLANS46316.2020.9109895"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2020%20IEEE/ION%20Position%2C%20Location%20and%20Navigation%20Symposium%20%28PLANS%29", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1109/PLANS46316.2020.9109895", "name": "item", "description": "10.1109/PLANS46316.2020.9109895", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1109/PLANS46316.2020.9109895"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-01T00:00:00Z"}}, {"id": "10.1111/1365-2745.13028", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2018-08-14", "title": "A competition-defence trade-off both promotes and weakens coexistence in an annual plant community", "description": "Abstract<p>   <p>Competition\uffe2\uff80\uff93defence trade\uffe2\uff80\uff90offs have long been thought to promote plant coexistence and increase species diversity. However, insights from modern coexistence theory clarify that such trade\uffe2\uff80\uff90offs alone cannot sustain coexistence. Coexistence also requires stabilising niche differences and the ability of competitor populations to persist under consumer pressure. Despite the breadth of potential consequences of competition\uffe2\uff80\uff93defence trade\uffe2\uff80\uff90offs, we have little mechanistic understanding of how they affect diversity in natural communities.</p>  <p>We investigated the effects of seed harvesting by ants on coexistence in an annual plant community. We parameterised a model of plant competitive population dynamics with data from two field experiments: (a) plant demographic rates and competition coefficients determined by growing plants alone and against intra\uffe2\uff80\uff90 and interspecific competitor density gradients; (b) plant fitness losses to ant consumers determined by measuring seed removal from experimental depots. We tested for a trade\uffe2\uff80\uff90off between a plant species\uffe2\uff80\uff99 demographic potential and its susceptibility to consumption and then determined the bounds of ant effects on pairwise and multispecies coexistence by comparing model projections with and without seed consumption.</p>  <p>Ants harvested seeds of all plant species, but they strongly preferred the competitively superior large seeded species, inducing a competition\uffe2\uff80\uff93defence trade\uffe2\uff80\uff90off. Unequal seed loss to ants changed competition\uffe2\uff80\uff90based fitness hierarchies, affecting both the number and identities of plant species pairs that were predicted to coexist compared to a scenario without ants. The trade\uffe2\uff80\uff90off most often prevented coexistence by severely disadvantaging the superior competitor or excluding species directly through overconsumption, and a simulated reduction in the overall consumption rate opened few additional opportunities for coexistence. Ant exacerbation of average fitness differences was particularly disruptive to multispecies coexistence, where niche differences were insufficient to stabilise the coexistence of plant triplets and quadruplets.</p>  <p>Synthesis. Our results show that the presence of a competition\uffe2\uff80\uff93defence trade\uffe2\uff80\uff90off in a community with stabilising niche differences does not always increase diversity. Instead, the full range of diversity outcomes\uffe2\uff80\uff94positive and negative changes in species number and changes in the identity of the dominant\uffe2\uff80\uff94are possible. Taken together, our results support the emerging paradigm that consumers have wide\uffe2\uff80\uff90ranging impacts on plant diversity and suggest that variation in consumer pressure may be an important driver of large\uffe2\uff80\uff90scale diversity patterns.</p>  </p>", "keywords": ["Annual plants", "0106 biological sciences", "2. Zero hunger", "Seed depot", "Competition", "Competition\u2013defence trade-off", "Harvester ant", "15. Life on land", "Granivory", "01 natural sciences", "Coexistence", "Fitness hierarchy"]}, "links": [{"href": "https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/1365-2745.13028"}, {"href": "https://doi.org/10.1111/1365-2745.13028"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2745.13028", "name": "item", "description": "10.1111/1365-2745.13028", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2745.13028"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-08-13T00:00:00Z"}}, {"id": "10.1109/jphotov.2019.2943706", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:45Z", "type": "Journal Article", "created": "2019-10-23", "title": "Extracting and Generating PV Soiling Profiles for Analysis, Forecasting, and Cleaning Optimization", "description": "<p>&lt;div&gt;&lt;div&gt;&lt;div&gt;&lt;div&gt;The identification and prediction of the daily soiling profiles of a photovoltaic site is essential to plan the optimal cleaning schedule. In this article, we analyze and propose various methods to extract and generate photovoltaic soiling profiles, in order to improve the analysis and the forecast of the losses. New soiling rate extraction methods are proposed to reflect the seasonal variability of the soiling rates and, for this reason, are found to identify the most convenient cleaning day with the highest accuracy for the investigated sites. Also, we present an approach that could be used to predict future soiling losses through the implementation of stochastic weather generation algorithms whose ability to identify in advance the best cleaning schedule is also successfully tested. The methods presented in this article can optimize the operation and maintenance schedule and could make it possible, in the future, to predict soiling losses through analysis based only on environmental parameters, such as rainfall and particulate matter, without the need of long-term soiling data.&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;&lt;/div&gt;</p>", "keywords": ["Optimization", "Power", " Energy and Industry Applications", "Schedules", "Rain", "Cleaning", "Field Performance", "solar energy", "0211 other engineering and technologies", "02 engineering and technology", "Prediction methods", "7. Clean energy", "13. Climate action", "Soil measurements", "time series analysis", "0202 electrical engineering", " electronic engineering", " information engineering", "soiling", "stochastic processes", "Data mining", "Photovoltaic systems", "field performance; optimization; photovoltaic (PV) systems; prediction methods; soiling; solar energy; stochastic processes; time series analysis"]}, "links": [{"href": "https://iris.uniroma1.it/bitstream/11573/1625584/3/Micheli_postprint_Extracting_2020.pdf"}, {"href": "http://xplorestaging.ieee.org/ielx7/5503869/8939133/08880477.pdf?arnumber=8880477"}, {"href": "https://doi.org/10.1109/jphotov.2019.2943706"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/IEEE%20Journal%20of%20Photovoltaics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1109/jphotov.2019.2943706", "name": "item", "description": "10.1109/jphotov.2019.2943706", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1109/jphotov.2019.2943706"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-11-03T00:00:00Z"}}, {"id": "10.1109/jstars.2024.3422494", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:45Z", "type": "Journal Article", "created": "2024-07-03", "title": "Soil Texture and pH Mapping Using Remote Sensing and Support Sampling", "description": "Soil pH and texture are valuable information for agriculture, supporting the achievement of high productivity and low environmental impact, which is the basis for sustainable agricultural production. In this study, we present novel soil mapping techniques that integrate high-spatial-resolution satellite and ground data, surpassing traditional methods in precision and reliability. By synergizing remote sensing data, including polarimetric synthetic aperture and multispectral imagery, with climate and terrain information, alongside coarse-resolution soil data, we achieved high accuracy, with an average error of less than 6&#x0025;, in predicting soil pH and texture parameters. Notably, the approach allows for detailed mapping at the pixel level, revealing nuanced variability within 10&#x00D7;10 m field pixels. Considering the accuracy, the method establishes itself as a benchmark for field management guidelines integrating a precision sampling approach, offering actual and high spatial resolution information crucial for sustainable agricultural practices. This holistic approach allows new opportunities to revolutionize soil management practices, facilitating variable rate applications, soil moisture, and fertilization mapping and ultimately enhancing agri-environmental sustainability.", "keywords": ["2. Zero hunger", "precision agriculture", "STEROPES", "soil health", "QC801-809", "Geophysics. Cosmic physics", "Machine learning (ML)", "04 agricultural and veterinary sciences", "Remote sensing", "15. Life on land", "01 natural sciences", "soil mapping", "12. Responsible consumption", "Machine Learning", "Ocean engineering", "remote sensing", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "TC1501-1800", "0105 earth and related environmental sciences"], "contacts": [{"organization": "Y\u00fcz\u00fcg\u00fcll\u00fc, Onur, Fajraoui, Noura, Liebisch, Frank,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1109/jstars.2024.3422494"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/IEEE%20Journal%20of%20Selected%20Topics%20in%20Applied%20Earth%20Observations%20and%20Remote%20Sensing", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1109/jstars.2024.3422494", "name": "item", "description": "10.1109/jstars.2024.3422494", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1109/jstars.2024.3422494"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "10.1109/lgrs.2021.3073484", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:45Z", "type": "Journal Article", "created": "2021-06-10", "title": "Sentinel-1 Backscatter Assimilation Using Support Vector Regression or the Water Cloud Model at European Soil Moisture Sites", "description": "Sentinel-1 backscatter observations were assimilated into the Global Land Evaporation Amsterdam Model (GLEAM) using an ensemble Kalman filter. As a forward operator, which is required to simulate backscatter from soil moisture and leaf area index (LAI), we evaluated both the traditional water cloud model (WCM) and the support vector regression (SVR). With SVR, a closer fit between backscatter observations and simulations was achieved. The impact on the correlation between modeled and in situ soil moisture measurements was similar when assimilating the Sentinel data using WCM (\u0394 R = +0.037) or SVR (\u0394 R = +0.025).", "keywords": ["Vegetation mapping", "support vector regression (SVR)", "Technology and Engineering", "Data models", "0211 other engineering and technologies", "Computational modeling", "02 engineering and technology", "15. Life on land", "Geotechnical Engineering and Engineering Geology", "01 natural sciences", "Backscatter", "radar backscatter", "Soil", "Earth and Environmental Sciences", "LAND EVAPORATION", "Data assimilation", "Soil moisture", "Electrical and Electronic Engineering", "soil moisture", "Moisture", "SMOS", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://xplorestaging.ieee.org/ielx7/8859/9651998/09451176.pdf?arnumber=9451176"}, {"href": "https://doi.org/10.1109/lgrs.2021.3073484"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/IEEE%20Geoscience%20and%20Remote%20Sensing%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1109/lgrs.2021.3073484", "name": "item", "description": "10.1109/lgrs.2021.3073484", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1109/lgrs.2021.3073484"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-01T00:00:00Z"}}, {"id": "10.1111/1365-2435.14178", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:47Z", "type": "Journal Article", "created": "2022-09-10", "title": "Nitrogen loading enhances phosphorus limitation in terrestrial ecosystems with implications for soil carbon cycling", "description": "Abstract<p>   <p>Increased human\uffe2\uff80\uff90derived nitrogen (N) loading in terrestrial ecosystems has caused widespread ecosystem\uffe2\uff80\uff90level phosphorus (P) limitation. In response, plants and soil micro\uffe2\uff80\uff90organisms adopt a series of P\uffe2\uff80\uff90acquisition strategies to offset N loading\uffe2\uff80\uff90induced P limitation. Many of these strategies impose costs on carbon (C) allocation by plants and soil micro\uffe2\uff80\uff90organisms; however, it remains unclear how P\uffe2\uff80\uff90acquisition strategies affect soil C cycling. Herein, we review the literature on the effects of N loading on P limitation and outline a conceptual overview of how plant and microbial P\uffe2\uff80\uff90acquisition strategies may affect soil organic carbon (SOC) stabilization and decomposition in terrestrial ecosystems.</p>  <p>Excessive input of N significantly enhances plant biomass production, soil acidification, and produces plant litterfall with high N/P ratios, which can aggravate ecosystem\uffe2\uff80\uff90level P limitation.</p>  <p>Long\uffe2\uff80\uff90term N loading can cause plants and soil micro\uffe2\uff80\uff90organisms to alter their functional traits to increase P acquisition. Plants can release carboxylate exudates and phosphatases, modify root morphological traits, facilitate the formation of symbiotic associations with mycorrhizal fungi and stimulate the abundance of P\uffe2\uff80\uff90mineralizing and P\uffe2\uff80\uff90solubilizing micro\uffe2\uff80\uff90organisms. Releasing carboxylate exudates and phosphatases could accelerate SOC decomposition, whereas changing symbiotic associations and root morphological traits (e.g. an increase in fine root length) may contribute to higher SOC stabilization. Increased relative abundances of P\uffe2\uff80\uff90mineralizing and P\uffe2\uff80\uff90solubilizing bacteria can accelerate P mining and SOC decay, which may decrease microbial C use efficiency and subsequently lower SOC sequestration.</p>  <p>The trade\uffe2\uff80\uff90offs between different plant P\uffe2\uff80\uff90acquisition strategies under N loading should be among future research priorities due to their cascading impacts on soil C storage. Quantifying ecosystem thresholds for P adaption to increased N loading is important because P\uffe2\uff80\uff90acquisition strategies are effective when N loading is below the N threshold. Moreover, understanding the response of P\uffe2\uff80\uff90acquisition strategies at different levels of native soil N availability could provide insight to divergent P\uffe2\uff80\uff90acquisition strategies across sites and ecosystems. Altogether, P\uffe2\uff80\uff90acquisition strategies should be explicitly considered in Earth System Models to generate more realistic predictions of the effects of N loading on soil C cycling.</p>  </p><p>Read the free Plain Language Summary for this article on the Journal blog.</p", "keywords": ["2. Zero hunger", "nitrogen loading", "N ADDITION", "ACQUISITION", "phosphorus limitation", "ROOT MORPHOLOGY", "04 agricultural and veterinary sciences", "extracellular enzyme activity", "15. Life on land", "phosphorus-acquisition strategies", "01 natural sciences", "ARBUSCULAR MYCORRHIZAL FUNGI", "ORGANIC-MATTER", "symbiotic association", "P DEMAND", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "ENZYME-ACTIVITIES", "PINUS-TABULIFORMIS", "DEPOSITION", "PLANT", "carboxylate exudation", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1111/1365-2435.14178"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Functional%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2435.14178", "name": "item", "description": "10.1111/1365-2435.14178", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2435.14178"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-09-19T00:00:00Z"}}, {"id": "10.1111/1365-2435.14304", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:47Z", "type": "Journal Article", "created": "2023-02-21", "title": "Functional traits explain both seedling and adult plant spatial patterns in gypsum annual species", "description": "Abstract<p>   <p>Ecological processes such as seed dispersal or plant\uffe2\uff80\uff93plant interactions and environmental constraints such as climate or soil heterogeneity are known to influence establishment, and thus the spatial patterns of plant communities and populations. In this study, we hypothesized that key functional traits such as the specific leaf area (SLA), reproductive ratio (reproductive/vegetative biomass), seed mass and maximum plant height would influence the spatial patterns of individual species in annual, gypsophilous plant communities, and that these effects would be modulated by both the soil surface structure (biocrust) and climate (precipitation) conditions.</p>  <p>We mapped the spatial patterns of all plants found in six 1\uffe2\uff80\uff89\uffc3\uff97\uffe2\uff80\uff891\uffc2\uffa0m plots (more than 1000 individuals per plot) in both the seedling (autumn) and adult stages (spring) under two biocrust experimental conditions (intact vs. disturbed biocrust) during two consecutive years which were contrasted in term of precipitation (dry year and wet year). To assess the spatial patterns of seedlings and adults, we fitted four different spatial point pattern models (i.e. Poisson, inhomogeneous Poisson, Poisson cluster and inhomogeneous Poisson cluster processes) to each of the 242 populations of the 26 most abundant species that had more than 15 individuals per plot.</p>  <p>Most seedling populations exhibited clustered spatial patterns that persisted in the adult stage, which suggests that short\uffe2\uff80\uff90distance dispersal is an adaptive trait for soil specialists such as gypsophilous plants. One\uffe2\uff80\uff90third of the populations fitted an inhomogeneous model best but the physical structure of the biocrust was not related to them. More importantly, we found a connection between the functional strategies of species and the spatial distribution of plants. In particular, during the dry year, irrespective of the biocrust conditions, species with a high SLA and high Rep/Veg mainly exhibited clustered spatial patterns, whereas low SLA and low Rep/Veg were associated with random distributions. Species with heavy and light seed masses had random and clustered patterns, respectively. In both the dry and wet years, species with lower maximum heights had clustered patterns, whereas taller species exhibited random patterns. In addition, species with heavier seeds and greater maximum heights had the largest cluster sizes.</p>  <p>Our results confirm that the spatial patterns of seedlings and adult plants are significantly determined by the functional strategy of each species.</p>  </p><p>Read the free Plain Language Summary for this article on the Journal blog.</p", "keywords": ["2. Zero hunger", "0106 biological sciences", "point pattern analysis", "04 agricultural and veterinary sciences", "15. Life on land", "seed mass", "01 natural sciences", "maximum plant height", "biological soil crust", "seed dispersal", "reproductive/vegetative biomass ratio", "gypsophyte", "0401 agriculture", " forestry", " and fisheries", "specific leaf area"]}, "links": [{"href": "https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/1365-2435.14304"}, {"href": "https://doi.org/10.1111/1365-2435.14304"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Functional%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2435.14304", "name": "item", "description": "10.1111/1365-2435.14304", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2435.14304"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-04-13T00:00:00Z"}}, {"id": "10.1111/1365-2435.14512", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:47Z", "type": "Journal Article", "created": "2024-02-07", "title": "Trait\u2010based mechanistic approach highlights global patterns and losses of herbivore biomass functional diversity", "description": "Abstract<p>   <p>Mammalian herbivores play a pivotal role in Earth System processes by affecting biogeochemical cycles and ecosystem functioning, potentially leading to significant repercussions on atmosphere\uffe2\uff80\uff93biosphere feedbacks. Global dynamic models of mammalian populations can improve our understanding of their ecological role at large scales and the consequences of their extinctions. However, such models are still lacking and mammals are poorly integrated in Earth System Science.</p>  <p>We developed a mechanistic global model of terrestrial herbivore populations simulated with 37 functional groups defined through the analysis of eco\uffe2\uff80\uff90physiological traits across all extant herbivores (2599 species). We coupled this model with a global vegetation model to predict herbivores' maximum potential biomass in pre\uffe2\uff80\uff90industrial and at present\uffe2\uff80\uff90day and to study the environmental drivers explaining the distribution of herbivore biomass. Present\uffe2\uff80\uff90day biomass was estimated by accounting for anthropogenic activity causing habitat and range losses.</p>  <p>We show that natural ecosystems could have sustained a potential wild herbivore wet biomass of 330 Mt (95% CI: 245\uffe2\uff80\uff93417), comprised of 193 Mt (95% CI: 177\uffe2\uff80\uff93208) by large species (body mass &gt;1\uffe2\uff80\uff9310\uffe2\uff80\uff89kg, depending on functional group) and 138 Mt (95% CI: 68\uffe2\uff80\uff93209) by small species. We estimate that the remaining present\uffe2\uff80\uff90day large herbivores biomass is 82 Mt (95% CI: 32\uffe2\uff80\uff93133), reduced by 57% due to anthropogenic activity; consequently, small herbivores currently dominate global herbivore biomass with 98 Mt (95% CI: 91\uffe2\uff80\uff93106, \uffe2\uff88\uff9229%). Losses vary greatly across climatic zones and functional groups, suggesting that size is not the only discriminant feature of biomass decline.</p>  <p>Actual evapotranspiration is the most important driver of total, large and small herbivore biomass and explains 64%, 59% and 49% of its variation, respectively. Distribution of modelled and observed large herbivores' biomass suggested a high dependency on energy and water with more biomass in hot and wet areas. These results challenge the notion that large herbivore biomass peaks primarily in ecosystems with intermediate precipitation levels such as savannas.</p>  <p>Outside Africa and the Tropics, pre\uffe2\uff80\uff90industrial biomass hotspots occur in areas today dominated by humans; this could undermine the recovery of larger species biomass in certain areas. Our herbivore biomass estimates provide a quantitative benchmark for setting conservation and rewilding goals at large spatial scales. The herbivore model and functional classification create new opportunities to integrate mammals into Earth System Science and models.</p>  </p><p>Read the free Plain Language Summary for this article on the Journal blog.</p", "keywords": ["0106 biological sciences", "0301 basic medicine", "2. Zero hunger", "[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", "570", "550", "Atmosphere", "[SDU.OCEAN] Sciences of the Universe [physics]/Ocean", " Atmosphere", "15. Life on land", "01 natural sciences", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "12. Responsible consumption", "03 medical and health sciences", "13. Climate action", "14. Life underwater", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", "environment"]}, "links": [{"href": "https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/1365-2435.14512"}, {"href": "https://doi.org/10.1111/1365-2435.14512"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Functional%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2435.14512", "name": "item", "description": "10.1111/1365-2435.14512", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2435.14512"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-20T00:00:00Z"}}, {"id": "10.1111/1467-7660.00151", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2003-03-11", "title": "Resettlement, Opium And Labour Dependence: Akha-Tai Relations In Northern Laos", "description": "<p>Forestry is a major source of revenue for the Lao People\uffe2\uff80\uff99s Democratic Republic. The Government\uffe2\uff80\uff99s view is that shifting cultivation in the highlands is the primary cause of deforestation and erosion; this has led it to establish a policy of eliminating shifting cultivation by the resettlement of highland people in or near the lowlands. Here, it is assumed, the highlanders will be able to lead a more sedentary existence, cultivate wet rice, and benefit from various forms of development assistance. In the district of Muang Sing in northern Laos this policy has been partly responsible for the movement of large numbers of Akha people downhill to settle on the lower slopes of the highlands, at the periphery of the lowlands. This movement has been further encouraged by the low productivity of the Akha swidden economy. This article argues that Akha expectations of a more secure livelihood have not been fulfilled due to the ravages of disease, high rates of opium addiction, and the lack of government assistance. Instead, the Akha of the lower slopes have become an impoverished labour force, exploited for the benefit of the politically and economically dominant Tai lowlanders.</p>", "keywords": ["2. Zero hunger", "0502 economics and business", "05 social sciences", "0507 social and economic geography", "1. No poverty", "15. Life on land"], "contacts": [{"organization": "Paul T. Cohen", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1111/1467-7660.00151"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Development%20and%20Change", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1467-7660.00151", "name": "item", "description": "10.1111/1467-7660.00151", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1467-7660.00151"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2000-01-01T00:00:00Z"}}, {"id": "10.1111/1365-2435.12475", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:47Z", "type": "Journal Article", "created": "2015-05-12", "title": "Nitrogen Saturation In Humid Tropical Forests After 6years Of Nitrogen And Phosphorus Addition: Hypothesis Testing", "description": "Summary<p>   <p>Nitrogen (N) saturation hypothesis suggests that when an ecosystem reaches N\uffe2\uff80\uff90saturation, continued N input will cause increased N leaching, nitrous oxide (N2O) emission, and N mineralization and nitrification rates. It also suggests that a different element will become the main limiting factor when N saturation has been reached. Although this hypothesis has been tested in temperate forests, whether they can be directly applied to N\uffe2\uff80\uff90saturated tropical forests remain poorly addressed.</p>  <p>To test this hypothesis, soil inorganic N, soil N mineralization and nitrification rate, soil N2O emission rate and nitrate () leaching rate were measured in an N\uffe2\uff80\uff90saturated old\uffe2\uff80\uff90growth tropical forest in southern China, after 6\uffc2\uffa0years of N and P addition. We hypothesized that N addition would stimulate further N saturation, but P addition might alleviate N saturation.</p>  <p>As expected, our results showed that six continuous years of experimental N addition did cause further N saturation, which was indicated by significant increases in soil inorganic N concentration, N2O emission and nitrate () leaching. However, in contrast to our expectations, N addition significantly decreased in\uffc2\uffa0situ rates of net N mineralization and nitrification, which could be related to associated changes in enzyme activity and microbial community composition. On the other hand, P addition mitigated N saturation, as expected. Soil inorganic N concentration, N2O emission and  leaching decreased significantly after P addition, but the net rates of N mineralization and nitrification were significantly increased.</p>  <p>Our results provide a new understanding of the N saturation hypothesis, suggesting that the effects of long\uffe2\uff80\uff90term N deposition on net N mineralization and nitrification rates in N\uffe2\uff80\uff90saturated tropical forests can be negative and that P addition can alleviate N saturation in such tropical systems.</p>  </p>", "keywords": ["China", "Nitrogen mineralization and nitrification", "Tropical forest", "Nitrogen saturation", "13. Climate action", "Phosphorus addition", "0401 agriculture", " forestry", " and fisheries", "N 2 O emission", "04 agricultural and veterinary sciences", "15. Life on land", "Nitrogen deposition"]}, "links": [{"href": "https://doi.org/10.1111/1365-2435.12475"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Functional%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2435.12475", "name": "item", "description": "10.1111/1365-2435.12475", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2435.12475"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-06-06T00:00:00Z"}}, {"id": "10.1111/1365-2656.12746", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:47Z", "type": "Journal Article", "created": "2017-08-18", "title": "Invasive earthworms erode soil biodiversity: A meta-analysis", "description": "Abstract<p>   <p>Biological invasions pose a serious threat to biodiversity and ecosystem functioning across ecosystems. Invasions by ecosystem engineers, in particular, have been shown to have dramatic effects in recipient ecosystems. For instance, invasion by earthworms, a below\uffe2\uff80\uff90ground invertebrate ecosystem engineer, in previously earthworm\uffe2\uff80\uff90free ecosystems alters the physico\uffe2\uff80\uff90chemical characteristics of the soil. Studies have shown that such alterations in the soil can have far\uffe2\uff80\uff90reaching impacts on soil organisms, which form a major portion of terrestrial biodiversity.</p>  <p>Here, we present the first quantitative synthesis of earthworm invasion effects on soil micro\uffe2\uff80\uff90organisms and soil invertebrates based on 430 observations from 30 independent studies.</p>  <p>Our meta\uffe2\uff80\uff90analysis shows a significant decline of the diversity and density of soil invertebrates in response to earthworm invasion with anecic and endogeic earthworms causing the strongest effects. Earthworm invasion effects on soil micro\uffe2\uff80\uff90organisms were context\uffe2\uff80\uff90dependent, such as depending on functional group richness of invasive earthworms and soil depth. Microbial biomass and diversity increased in mineral soil layers, with a weak negative effect in organic soil layers, indicating that the mixing of soil layers by earthworms (bioturbation) may homogenize microbial communities across soil layers.</p>  <p>Our meta\uffe2\uff80\uff90analysis provides a compelling evidence for negative effects of a common invasive below\uffe2\uff80\uff90ground ecosystem engineer on below\uffe2\uff80\uff90ground biodiversity of recipient ecosystems, which could potentially alter the ecosystem functions and services linked to soil biota.</p>  </p>", "keywords": ["Biodiversity change", "0106 biological sciences", "2. Zero hunger", "Soil invertebrates", "Population Dynamics", "Soil micro-organisms", "Biodiversity", "04 agricultural and veterinary sciences", "15. Life on land", "Invertebrates", "01 natural sciences", "Chemistry", "Soil", "Ecosystem engineer", "13. Climate action", "Animals", "0401 agriculture", " forestry", " and fisheries", "Oligochaeta", "Introduced Species", "Biology", "Biological invasion", "Ecosystem", "Soil Microbiology"]}, "links": [{"href": "https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/1365-2656.12746"}, {"href": "https://doi.org/10.1111/1365-2656.12746"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Animal%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2656.12746", "name": "item", "description": "10.1111/1365-2656.12746", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2656.12746"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-09-28T00:00:00Z"}}, {"id": "10.1111/1365-2664.13839", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:47Z", "type": "Journal Article", "created": "2021-01-19", "title": "Effects of microplastics and drought on soil ecosystem functions and multifunctionality", "description": "Abstract<p>   <p>Microplastics in soils have become an important threat for terrestrial systems as they may potentially alter the geochemical/biophysical soil environment and can interact with drought. As microplastics may affect soil water content, this could exacerbate the well\uffe2\uff80\uff90known negative effects of drought on ecosystem functionality. Thus, functions including litter decomposition, soil aggregation or those related with nutrient cycling can be altered. Despite this potential interaction, we know relatively little about how microplastics, under different soil water conditions, affect ecosystem functions and multifunctionality.</p>  <p>To address this gap, we performed an experiment using grassland plant communities growing in microcosms. Microplastic fibres (absent, present) and soil water conditions (well\uffe2\uff80\uff90watered, drought) were applied in a fully factorial design. At harvest, we measured soil ecosystem functions related to nutrient cycling (\uffce\uffb2\uffe2\uff80\uff90glucosaminidase, \uffce\uffb2\uffe2\uff80\uff90D\uffe2\uff80\uff90cellobiosidase, phosphatase, \uffce\uffb2\uffe2\uff80\uff90glucosidase enzymes), respiration, nutrient retention, pH, litter decomposition and soil aggregation (water stable aggregates). As terrestrial systems provide these functions simultaneously, we also assessed ecosystem multifunctionality, an index that encompasses the array of ecosystem functions measured here.</p>  <p>We found that the interaction between microplastic fibres and drought affected ecosystem functions and multifunctionality. Drought had negatively affected nutrient cycling by decreasing enzymatic activities by up to ~39%, while microplastics increased soil aggregation by ~18%, soil pH by ~4% and nutrient retention by up to ~70% by diminishing nutrient leaching. Microplastic fibres also impacted soil enzymes, respiration and ecosystem multifunctionality, but importantly, the direction of these effects depended on soil water status. That is, under well\uffe2\uff80\uff90watered conditions, these functions decreased with microplastic fibres by up to ~34% while under drought they had similar values irrespective of the microplastic presence, or tended to increase with microplastics. Litter decomposition had a contrary pattern increasing with microplastics by ~6% under well\uffe2\uff80\uff90watered conditions while decreasing to a similar percentage under drought.</p>  <p>Synthesis and applications. Single ecosystem functions can be positively or negatively affected by microplastics fibres depending on soil water status. However, our results suggest that microplastic fibres may cause negative effects on ecosystem soil multifunctionality of a similar magnitude as drought. Thus, strategies to counteract this new global change factor are necessary.</p>  </p>", "keywords": ["2. Zero hunger", "570", "ddc:630", "nutrient cycling", "litter decomposition", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie", "04 agricultural and veterinary sciences", "15. Life on land", "soil respiration", "01 natural sciences", "6. Clean water", "soil aggregation", "soil pH", "grasslands ecosystem", "13. Climate action", "nutrient leaching", "0401 agriculture", " forestry", " and fisheries", "ddc:570", "Institut f\u00fcr Biochemie und Biologie", "enzymatic activities", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/1365-2664.13839"}, {"href": "https://doi.org/10.1111/1365-2664.13839"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Applied%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2664.13839", "name": "item", "description": "10.1111/1365-2664.13839", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2664.13839"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-10T00:00:00Z"}}, {"id": "10.1111/1365-2745.12053", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:47Z", "type": "Journal Article", "created": "2013-05-10", "title": "Strong Congruence In Tree And Fern Community Turnover In Response To Soils And Climate In Central Panama", "description": "Summary<p>   <p>Plant species turnover in central Panamanian forests has been principally attributed to the effects of dispersal limitation and a strong Caribbean to Pacific gradient in rainfall seasonality. Despite marked geological heterogeneity, the role of soil variation has not been rigorously examined.</p>  <p>We modelled the compositional turnover of trees and ferns in the Panama Canal watershed as a function of soil chemistry, climate and geographical separation, using generalized dissimilarity models (GDMs).</p>  <p>Predictability in both plant groups was strong, with 74% of turnover explained in trees and 49% in ferns. Major trends in the two plant groups were strikingly similar. The independent effects of soils, and of climate for trees, were sizeable, but those of geographical distance were minor. In both plant groups, distance and climatic effects on species turnover covaried strongly.</p>  <p>Including floristic dissimilarity of the other taxon as a predictor increased explained deviance to 81% in trees and 59% in ferns. Controlling for differences in plant density among plots reduced deviance explained by climate and distance, while soil effects remained strong. Limiting the analyses to soils of volcanic origin increased deviance explained by climate, soils and distance, but their effects covaried strongly. Independent soil effects on tree turnover were reduced, but their effects on fern turnover remained pronounced.</p>  <p>Dry season length was the most important climatic predictor for both taxa, and P and pH were the most important soil predictors. Particularly, rapid species turnover was associated with the driest end of the seasonality gradient, linked to declining individual densities and species richness, and with the low end of the phosphorus gradient.</p>  <p>Synthesis. While changes in rainfall and seasonality undoubtedly limit plant distributions in this region, soil effects are at least as important, and interactions between the two are sizeable. This is likely to hold elsewhere in the Caribbean region, where mosaics of marine and volcanic soils combined with pronounced rainfall gradients are common. Strong congruence between our focal taxa suggests that our results can be extrapolated to other plant groups, particularly as trees and ferns are distantly related and represent different life\uffe2\uff80\uff90forms.</p>  </p>", "keywords": ["0106 biological sciences", "biotic interactions", " determinants of plant community diversity and structure", " edaphic variation", " environmental control", " matrix regression", " precipitation", " Pteridophyta", " seed and spore dispersal", " tropical forests", " turnover rates", "15. Life on land", "01 natural sciences"]}, "links": [{"href": "https://doi.org/10.1111/1365-2745.12053"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2745.12053", "name": "item", "description": "10.1111/1365-2745.12053", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2745.12053"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-01-14T00:00:00Z"}}, {"id": "10.1111/1365-2745.12593", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:47Z", "type": "Journal Article", "created": "2016-04-22", "title": "Drought History Affects Grassland Plant And Microbial Carbon Turnover During And After A Subsequent Drought Event", "description": "Summary<p>   <p>Drought periods are projected to become more severe and more frequent in many European regions. While effects of single strong droughts on plant and microbial carbon (C) dynamics have been studied in some detail, impacts of recurrent drought events are still little understood.</p>  <p>We tested whether the legacy of extreme experimental drought affects responses of plant and microbial C and nitrogen (N) turnover to further drought and rewetting. In a mountain grassland, we conducted a 13C pulse\uffe2\uff80\uff90chase experiment during a naturally occurring drought and rewetting event in plots previously exposed to experimental droughts and in ambient controls (AC). After labelling, we traced 13C below\uffe2\uff80\uff90ground allocation and incorporation into soil microbes using phospholipid fatty acid biomarkers.</p>  <p>Drought history (DH) had no effects on the standing shoot and fine root plant biomass. However, plants with experimental DH displayed decreased shoot N concentrations and increased fine root N concentrations relative to those in AC. During the natural drought, plants with DH assimilated and allocated less 13C below\uffe2\uff80\uff90ground; moreover, fine root respiration was reduced and not fuelled by fresh C compared to plants in AC.</p>  <p>Regardless of DH, microbial biomass remained stable during natural drought and rewetting. Although microbial communities initially differed in their composition between soils with and without DH, they responded to the natural drought and rewetting in a similar way: gram\uffe2\uff80\uff90positive bacteria increased, while fungal and gram\uffe2\uff80\uff90negative bacteria remained stable. In soils with DH, a strongly reduced uptake of recent plant\uffe2\uff80\uff90derived 13C in microbial biomarkers was observed during the natural drought, pointing to a smaller fraction of active microbes or to a microbial community that is less dependent on plant C.</p>  <p>Synthesis. Drought history can induce changes in above\uffe2\uff80\uff90 vs. below\uffe2\uff80\uff90ground plant N concentrations and affect the response of plant C turnover to further droughts and rewetting by decreasing plant C uptake and below\uffe2\uff80\uff90ground allocation. DH does not affect the responses of the microbial community to further droughts and rewetting, but alters microbial functioning, particularly the turnover of recent plant\uffe2\uff80\uff90derived carbon, during and after further drought periods.</p>  </p>", "keywords": ["0301 basic medicine", "plant-soil (below-ground) interactions", "NITROGEN TURNOVER", "Biomass Allocation", "microbial community composition", "Negibacteria", "drought", "phospholipid fatty acid", "nitrogen", "Microbial community composition", "Plant\u2013Soil (Below\u2010ground) Interactions", "Recovery", "ROOT RESPIRATION", "Plant-soil (below-ground) interactions", "CLIMATE EXTREMES", "C pulse labelling", "Below-ground carbon allocation", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "SOIL INTERACTIONS", "below-ground carbon allocation", "C-13 pulse labelling", "Grassland", "6. Clean water", "Europe", "Phospholipid", "ORGANIC-MATTER", "Mountain Region", "Posibacteria", "DIOXIDE PULSES", "Phospholipid fatty acid", "106022 Microbiology", "Root/shoot Ratio", "Belowground Biomass", "Ecosystem Resilience", "Nitrogen", "Microbial Community", "Carbon Isotope", "Soil-vegetation Interaction", "recovery", "SUMMER DROUGHT", "03 medical and health sciences", "Rewetting", "Community Composition", "plant\u2013soil (below-ground) interactions", "WATER-STRESS", "resilience", "Drought", "Resilience", "RESILIENCE", "15. Life on land", "Turnover", "Microbial Activity", "13. Climate action", "Fatty Acid", "RESPONSES"]}, "links": [{"href": "https://doi.org/10.1111/1365-2745.12593"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2745.12593", "name": "item", "description": "10.1111/1365-2745.12593", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2745.12593"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-05-24T00:00:00Z"}}, {"id": "10.1111/1477-8947.12071", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:49Z", "type": "Journal Article", "created": "2015-08-19", "title": "Resource Conservation Strategies For Rice-Wheat Cropping Systems On Partially Reclaimed Sodic Soils Of The Indo-Gangetic Region, And Their Effects On Soil Carbon", "description": "Abstract<p>The Indo\uffe2\uff80\uff90Gangetic plain is characterized by intensive agriculture, largely by resource\uffe2\uff80\uff90poor small and marginal farmers. Vast swathes of salt\uffe2\uff80\uff90affected areas in the region provide both challenges and opportunities to bolster food security and sequester carbon after reclamation. Sustainable management of reclaimed soils via resource conservation strategies, such as residue retention, is key to the prosperity of the farmer, as well as increases the efficiency of expensive initiatives to further reclaim sodic land areas, which currently lay barren. After five years of experimentation on resource conservation strategies for rice\uffe2\uff80\uff90wheat systems on partially reclaimed sodic soils of the Indo\uffe2\uff80\uff90Gangetic region, we evaluated changes in different soil carbon pools and crop yield. Out of all resource conservation techniques which were tested, rice\uffe2\uff80\uff90wheat crop residue addition (30% of total production) was most effective in increasing soil organic carbon (SOC). In rice, without crop residue addition (WCR), soils under zero\uffe2\uff80\uff90tillage with transplanting, summer ploughing with transplanting and direct seeding with brown manuring showed a significant increase in SOC over the control (puddling in rice, conventional tillage in wheat). In these treatments relatively higher levels of carbon were attained in all aggregate fractions compared to the control. Soil aggregate sizes in meso (0.25\uffe2\uff80\uff902.0\uffe2\uff80\uff89mm) and macro (2\uffe2\uff80\uff908\uffe2\uff80\uff89mm) ranges increased, whereas micro (&lt; 0.25\uffe2\uff80\uff89mm) fractions decreased in soils under zero\uffe2\uff80\uff90till practices, both with and without crop residue addition. Direct seeding with brown manuring and zero tillage with transplanting also showed an increase of 135% and 95%, respectively, over the control in microbial biomass carbon, without crop residue incorporation. In zero tillage with transplanting treatment, both with and without crop residue showed significant increase in soil carbon sequestration potential. Though the changes in accrued soil carbon did not bring about significant differences in terms of grain yield, overall synthesis in terms of balance between yield and carbon sequestration indicated that summer ploughing with transplanting and zero tillage with transplanting sequestered significantly higher rates of carbon, yet yielded on par with conventional practices. These could be appropriate alternatives to immediately replace conventional tillage and planting practices for rice\uffe2\uff80\uff90wheat cropping systems in the sodic soils of the Indo\uffe2\uff80\uff90Gangetic region.</p>", "keywords": ["2. Zero hunger", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water", "12. Responsible consumption"]}, "links": [{"href": "https://doi.org/10.1111/1477-8947.12071"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Natural%20Resources%20Forum", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1477-8947.12071", "name": "item", "description": "10.1111/1477-8947.12071", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1477-8947.12071"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-05-01T00:00:00Z"}}, {"id": "10.1111/1462-2920.13842", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2017-06-27", "title": "Identification and characterisation of isoprene-degrading bacteria in an estuarine environment", "description": "Summary<p>Approximately one\uffe2\uff80\uff90third of volatile organic compounds (VOCs) emitted to the atmosphere consists of isoprene, originating from the terrestrial and marine biosphere, with a profound effect on atmospheric chemistry. However, isoprene provides an abundant and largely unexplored source of carbon and energy for microbes. The potential for isoprene degradation in marine and estuarine samples from the Colne Estuary, UK, was investigated using DNA\uffe2\uff80\uff90Stable Isotope Probing (DNA\uffe2\uff80\uff90SIP). Analysis at two timepoints showed the development of communities dominated by Actinobacteria including members of the genera Mycobacterium, Rhodococcus, Microbacterium and Gordonia. Representative isolates, capable of growth on isoprene as sole carbon and energy source, were obtained from marine and estuarine locations, and isoprene\uffe2\uff80\uff90degrading strains of Gordonia and Mycobacterium were characterised physiologically and their genomes were sequenced. Genes predicted to be required for isoprene metabolism, including four\uffe2\uff80\uff90component isoprene monooxygenases (IsoMO), were identified and compared with previously characterised examples. Transcriptional and activity assays of strains growing on isoprene or alternative carbon sources showed that growth on isoprene is an inducible trait requiring a specific IsoMO. This study is the first to identify active isoprene degraders in estuarine and marine environments using DNA\uffe2\uff80\uff90SIP and to characterise marine isoprene\uffe2\uff80\uff90degrading bacteria at the physiological and molecular level.</p>", "keywords": ["0301 basic medicine", "570", "Volatile Organic Compounds", "0303 health sciences", "550", "Base Sequence", "610", "QR Microbiology", "Sequence Analysis", " DNA", "Environment", "6. Clean water", "Mixed Function Oxygenases", "Mycobacterium", "03 medical and health sciences", "Hemiterpenes", "13. Climate action", "Pentanes", "Butadienes", "Rhodococcus", "14. Life underwater", "Gordonia Bacterium", "Research Articles", "Genome", " Bacterial", "GE Environmental Sciences"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/63998/4/Published_manuscript.pdf"}, {"href": "http://onlinelibrary.wiley.com/wol1/doi/10.1111/1462-2920.13842/fullpdf"}, {"href": "https://doi.org/10.1111/1462-2920.13842"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.13842", "name": "item", "description": "10.1111/1462-2920.13842", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.13842"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-07-21T00:00:00Z"}}, {"id": "10.1111/1462-2920.15647", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2021-06-17", "title": "\u2018Cry\u2010for\u2010help\u2019 in contaminated soil: a dialogue among plants and soil microbiome to survive in hostile conditions", "description": "Summary<p>An open question in environmental ecology regards the mechanisms triggered by root chemistry to drive the assembly and functionality of a beneficial microbiome to rapidly adapt to stress conditions. This phenomenon, originally described in plant defence against pathogens and predators, is encompassed in the \uffe2\uff80\uff98cry\uffe2\uff80\uff90for\uffe2\uff80\uff90help\uffe2\uff80\uff99 hypothesis. Evidence suggests that this mechanism may be part of the adaptation strategy to ensure the holobiont fitness in polluted environments. Polychlorinated biphenyls (PCBs) were considered as model pollutants due to their toxicity, recalcitrance and poor phyto\uffe2\uff80\uff90extraction potential, which lead to a plethora of phytotoxic effects and rise environmental safety concerns. Plants have inefficient detoxification processes to catabolize PCBs, even leading to by\uffe2\uff80\uff90products with a higher toxicity. We propose that the \uffe2\uff80\uff98cry\uffe2\uff80\uff90for\uffe2\uff80\uff90help\uffe2\uff80\uff99 mechanism could drive the exudation\uffe2\uff80\uff90mediated recruitment and sustainment of the microbial services for PCBs removal, exerted by an array of anaerobic and aerobic microbial degrading populations working in a complex metabolic network. Through this synergistic interaction, the holobiont copes with the soil contamination, releasing the plant from the pollutant stress by the ecological services provided by the boosted metabolism of PCBs microbial degraders. Improving knowledge of root chemistry under PCBs stress is, therefore, advocated to design rhizoremediation strategies based on plant microbiome engineering.</p>", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Microbiota", "Minireviews", "15. Life on land", "Polychlorinated Biphenyls", "6. Clean water", "Soil", "03 medical and health sciences", "Biodegradation", " Environmental", "13. Climate action", "Soil Pollutants", "Environmental Pollution", "Soil Microbiology"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/857922/2/Rolli%20et%20al.%202021_EM.pdf"}, {"href": "https://air.unimi.it/bitstream/2434/857922/4/1462-2920.15647.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.15647"}, {"href": "https://doi.org/10.1111/1462-2920.15647"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.15647", "name": "item", "description": "10.1111/1462-2920.15647", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.15647"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-06-23T00:00:00Z"}}, {"id": "10.1111/1462-2920.15132", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:19:48Z", "type": "Journal Article", "created": "2020-06-18", "title": "Trait\u2010based approaches reveal fungal adaptations to nutrient\u2010limiting conditions", "description": "Summary<p>The dependency of microbial activity on nutrient availability in soil is only partly understood, but highly relevant for nutrient cycling dynamics. In order to achieve more insight on microbial adaptations to nutrient limiting conditions, precise physiological knowledge is needed. Therefore, we developed an experimental system assessing traits of 16 saprobic fungal isolates in nitrogen (N) limited conditions. We tested the hypotheses that (1) fungal traits are negatively affected by N deficiency to a similar extent and (2) fungal isolates respond in a phylogenetically conserved fashion. Indeed, mycelial density, spore production and fungal activity (respiration and enzymatic activity) responded similarly to limiting conditions by an overall linear decrease. By contrast, mycelial extension and hyphal elongation peaked at lowest N supply (C:N 200), causing maximal biomass production at intermediate N contents. Optimal N supply rates differed among isolates, but only the extent of growth reduction was phylogenetically conserved. In conclusion, growth responses appeared as a switch from explorative growth in low nutrient conditions to exploitative growth in nutrient\uffe2\uff80\uff90rich patches, as also supported by responses to phosphorus and carbon limitations. This detailed trait\uffe2\uff80\uff90based pattern will not only improve fungal growth models, but also may facilitate interpretations of microbial responses observed in field studies.</p>", "keywords": ["0106 biological sciences", "0301 basic medicine", "2. Zero hunger", "Nitrogen", "Fungi", "577", "Phosphorus", "Nutrients", "Spores", " Fungal", "15. Life on land", "microbial activity", "01 natural sciences", "Carbon", "Soil", "fungal adaptations", "03 medical and health sciences", "Biomass", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::577 \u00d6kologie", "Soil Microbiology", "nutrient\u2010limiting conditions"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1462-2920.15132"}, {"href": "https://doi.org/10.1111/1462-2920.15132"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.15132", "name": "item", "description": "10.1111/1462-2920.15132", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.15132"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-07-08T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=PO&offset=1950&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=PO&offset=1950&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "prev", "title": "items (prev)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=PO&offset=1900", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=PO&offset=2000", "hreflang": "en-US"}], "numberMatched": 6346, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-04-04T12:38:01.567534Z"}