{"type": "FeatureCollection", "features": [{"id": "10.1007/s11104-021-05010-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:15:51Z", "type": "Journal Article", "created": "2021-07-07", "title": "Root anatomy and soil resource capture", "description": "Abstract                 Background                 <p>Suboptimal water and nutrient availability are primary constraints in global agriculture. Root anatomy plays key roles in soil resource acquisition. In this article we summarize evidence that root anatomical phenotypes present opportunities for crop breeding.</p>                                Scope                 <p>Root anatomical phenotypes influence soil resource acquisition by regulating the metabolic cost of soil exploration, exploitation of the rhizosphere, the penetration of hard soil domains, the axial and radial transport of water, and interactions with soil biota including mycorrhizal fungi, pathogens, insects, and the rhizosphere microbiome. For each of these topics we provide examples of anatomical phenotypes which merit attention as selection targets for crop improvement. Several cross-cutting issues are addressed including the importance of phenotypic plasticity, integrated phenotypes, C sequestration, in silico modeling, and novel methods to phenotype root anatomy including image analysis tools.</p>                                Conclusions                 <p>An array of anatomical phenes have substantial importance for the acquisition of water and nutrients. Substantial phenotypic variation exists in crop germplasm. New tools and methods are making it easier to phenotype root anatomy, determine its genetic control, and understand its utility for plant fitness. Root anatomical phenotypes are underutilized yet attractive breeding targets for the development of the efficient, resilient crops urgently needed in global agriculture.</p>", "keywords": ["Carbon sequestration", "0106 biological sciences", "0301 basic medicine", "2. Zero hunger", "Root; Anatomy; Water; Nutrients; Transport; Insects; Pathogens; Mycorrhiza; Carbon sequestration; Modeling; Image analysis; Plasticity", "Plasticity", "Modeling", "Water", "Transport", "Nutrients", "15. Life on land", "01 natural sciences", "Image analysis", "Insects", "03 medical and health sciences", "Root", "Anatomy", "Pathogens", "Mycorrhiza"]}, "links": [{"href": "https://doi.org/10.1007/s11104-021-05010-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-021-05010-y", "name": "item", "description": "10.1007/s11104-021-05010-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-021-05010-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-07-07T00:00:00Z"}}, {"id": "10.1016/j.jafr.2023.100732", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:17:10Z", "type": "Journal Article", "created": "2023-08-07", "title": "Aeromycological studies in the crops of the main cereals: A systematic review", "description": "Open AccessLes \u00e9tudes a\u00e9romycologiques sur les cultures c\u00e9r\u00e9ali\u00e8res permettent de d\u00e9terminer la variation temporelle des agents pathog\u00e8nes des plantes affectant la culture et de d\u00e9terminer le moment appropri\u00e9 pour appliquer les fongicides. Cependant, ce sujet n'a pas \u00e9t\u00e9 syst\u00e9matiquement revu. L'objectif de ce travail \u00e9tait d'analyser syst\u00e9matiquement toutes les \u00e9tudes a\u00e9romycologiques r\u00e9alis\u00e9es sur le ma\u00efs, le bl\u00e9, le riz, l'avoine, l'orge, le seigle, le sorgho et le millet. Une recherche syst\u00e9matique a \u00e9t\u00e9 effectu\u00e9e dans Scopus depuis le d\u00e9but de la base de donn\u00e9es jusqu'au 1er ao\u00fbt 2022. Les crit\u00e8res d'inclusion \u00e9taient qu'il s'agissait d'\u00e9tudes a\u00e9romycologiques sur le bl\u00e9 ou le riz ou le ma\u00efs ou l'avoine ou le sorgho ou le seigle ou l'orge ou le millet et d'\u00e9tudes publi\u00e9es dans des revues \u00e0 comit\u00e9 de lecture index\u00e9es dans Journal Citation Reports et r\u00e9dig\u00e9es en anglais ou en espagnol. Quarante-trois \u00e9tudes (21 sur le bl\u00e9, 15 sur le riz, 5 sur le ma\u00efs, 1 sur le sorgho et 2 sur l'orge) r\u00e9pondant \u00e0 tous les crit\u00e8res d'\u00e9ligibilit\u00e9 ont \u00e9t\u00e9 incluses (une des \u00e9tudes sur le ma\u00efs a \u00e9galement \u00e9t\u00e9 men\u00e9e sur le bl\u00e9). Aucune \u00e9tude a\u00e9romycologique n'a \u00e9t\u00e9 trouv\u00e9e chez l'avoine, le seigle et le millet. Il a \u00e9t\u00e9 not\u00e9 que la plupart des recherches a\u00e9romycologiques ont \u00e9t\u00e9 men\u00e9es sur les cultures de bl\u00e9 et principalement dans les pays des Am\u00e9riques. De plus, les propagules fongiques sont principalement collect\u00e9es par des m\u00e9thodes non viables, en utilisant divers types de collecteurs. En g\u00e9n\u00e9ral, les \u00e9tudes visaient \u00e0 identifier un agent pathog\u00e8ne sp\u00e9cifique et non \u00e0 la diversit\u00e9 des agents pathog\u00e8nes qui peuvent \u00eatre trouv\u00e9s. La relation des champignons identifi\u00e9s avec les param\u00e8tres m\u00e9t\u00e9orologiques \u00e9tait variable dans les diff\u00e9rentes \u00e9tudes. Cette revue syst\u00e9matique permet de r\u00e9sumer les \u00e9tudes a\u00e9romycologiques qui ont \u00e9t\u00e9 men\u00e9es sur les cultures de bl\u00e9, de riz, de ma\u00efs, de sorgho et d'orge. Il sugg\u00e8re \u00e9galement o\u00f9 les futures \u00e9tudes dans ce domaine devraient \u00eatre dirig\u00e9es, en fonction des limites rencontr\u00e9es.", "keywords": ["Impacts of Elevated CO2 and Ozone on Plant Physiology", "Agriculture (General)", "Health", " Toxicology and Mutagenesis", "Plant Science", "Crop", "S1-972", "Agricultural and Biological Sciences", "Barley", "Biochemistry", " Genetics and Molecular Biology", "TX341-641", "10. No inequality", "Biology", "Sorghum", "2. Zero hunger", "Corn", "Airborne spores", "Nutrition. Foods and food supply", "Life Sciences", "Phylogenetic Analysis", "Cell Biology", "15. Life on land", "2414.06 Hongos", "Agronomy", "3. Good health", "Wheat", "Environmental Science", "Physical Sciences", "Rice", "Indoor Air Quality and Health Effects", "Diversity and Evolution of Fungal Pathogens", "Biotechnology"]}, "links": [{"href": "https://doi.org/10.1016/j.jafr.2023.100732"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Agriculture%20and%20Food%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jafr.2023.100732", "name": "item", "description": "10.1016/j.jafr.2023.100732", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jafr.2023.100732"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-01T00:00:00Z"}}, {"id": "10.1016/j.meatsci.2021.108661", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:17:18Z", "type": "Journal Article", "created": "2021-08-24", "title": "Application of lactic acid bacteria for the biopreservation of meat products: A systematic review", "description": "The increasing concern of consumers about food quality and safety and their rejection of chemical additives has promoted the breakthrough of the biopreservation field and the development of studies on the use of beneficial bacteria and their metabolites as potential natural antimicrobials for shelf life extension and enhanced food safety. Control of foodborne pathogens in meat and meat products represents a serious challenge for the food industry which can be addressed through the intelligent use of bio-compounds or biopreservatives. This article aims to systematically review the available knowledge about biological strategies based on the use of lactic acid bacteria to control the proliferation of undesirable microorganisms in different meat products. The outcome of the literature search evidenced the potential of several strains of lactic acid bacteria and their purified or semi-purified antimicrobial metabolites as biopreservatives in meat products for achieving longer shelf life or inhibiting spoilage and pathogenic bacteria, especially when combined with other technologies to achieve a synergistic effect.", "keywords": ["2. Zero hunger", "Meat", "Natural antimicrobials", "Bacteria", "3309 Tecnolog\u00eda de Los Alimentos", "Tecnolog\u00eda de los alimentos", "04 agricultural and veterinary sciences", "Biopreservation", "Anti-Bacterial Agents", "Meat Products", "Foodborne pathogens", "0404 agricultural biotechnology", "Bacteriocins", "Lactobacillales", "Food Preservation", "Lactic acid bacteria", "Food Microbiology", "Animals"]}, "links": [{"href": "https://doi.org/10.1016/j.meatsci.2021.108661"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Meat%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.meatsci.2021.108661", "name": "item", "description": "10.1016/j.meatsci.2021.108661", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.meatsci.2021.108661"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-01T00:00:00Z"}}, {"id": "10.1038/s41558-020-0759-3", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-24T16:18:23Z", "type": "Journal Article", "created": "2020-05-11", "title": "The proportion of soil-borne pathogens increases with warming at the global scale", "description": "Open AccessPeer reviewed", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Climate and land-use changes", "Warmer temperatures", "Ecolog\u00eda", "15. Life on land", "soilborne plant pathogens", "climatic changes", "Global distribution", "03 medical and health sciences", "13. Climate action", "XXXXXX - Unknown", "Soil-borne pathogens"]}, "links": [{"href": "http://www.nature.com/articles/s41558-020-0759-3.pdf"}, {"href": "https://doi.org/10.1038/s41558-020-0759-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Climate%20Change", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41558-020-0759-3", "name": "item", "description": "10.1038/s41558-020-0759-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41558-020-0759-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-05-11T00:00:00Z"}}, {"id": "10.1080/01140671.2016.1229345", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:18:50Z", "type": "Journal Article", "created": "2016-09-16", "title": "A Long-Term Vegetable Crop Rotation Study To Determine Effects On Soil Microbial Communities And Soilborne Diseases Of Potato And Onion", "description": "ABSTRACTA rotation trial spanning nine consecutive growing seasons was established in 2004 to study cumulative effects of specific onion- and potato-focused crop rotations on soil nutrient levels, soil biological communities, plant productivity and soilborne diseases. Soil microbial activity, as determined by fluorescein diacetate hydrolysis, was greatest in the \u2018sustainable\u2019 potato rotation in five of the 6 years that the test was carried out. Rhizoctonia solani anastomosis group 3 DNA was first detected in potato monoculture soils in the fifth year, with numbers increasing from then on, but was not detected in the onion monoculture throughout the trial period. Potato yields were greater when a crop other than potato was grown in the previous year compared with when potatoes were the preceding crop. After 2005, mean annual onion yields from the onion monoculture were less than yields from the other rotations. Black scurf on potato tubers was the primary soilborne disease observed during the study, and th...", "keywords": ["soil microflora", "ANZSRC::3004 Crop and pasture production", "2. Zero hunger", "crop rotations", "onion production", "potato production", "ANZSRC::3008 Horticultural production", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "soilborne pathogens", "15. Life on land", "630"]}, "links": [{"href": "https://doi.org/10.1080/01140671.2016.1229345"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Zealand%20Journal%20of%20Crop%20and%20Horticultural%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1080/01140671.2016.1229345", "name": "item", "description": "10.1080/01140671.2016.1229345", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1080/01140671.2016.1229345"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-09-16T00:00:00Z"}}, {"id": "10.1111/1541-4337.12727", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:19:15Z", "type": "Journal Article", "created": "2021-03-05", "title": "Antimicrobial nanoparticles and biodegradable polymer composites for active food packaging applications", "description": "Abstract<p>The food industry faces numerous challenges to assure provision of tasty and convenient food that possesses extended shelf life and shows long\uffe2\uff80\uff90term high\uffe2\uff80\uff90quality preservation. Research and development of antimicrobial materials for food applications have provided active antibacterial packaging technologies that are able to meet these challenges. Furthermore, consumers expect and demand sustainable packaging materials that would reduce environmental problems associated with plastic waste. In this review, we discuss antimicrobial composite materials for active food packaging applications that combine highly efficient antibacterial nanoparticles (i.e., metal, metal oxide, mesoporous silica and graphene\uffe2\uff80\uff90based nanomaterials) with biodegradable and environmentally friendly green polymers (i.e., gelatin, alginate, cellulose, and chitosan) obtained from plants, bacteria, and animals. In addition, innovative syntheses and processing techniques used to obtain active and safe packaging are showcased. Implementation of such green active packaging can significantly reduce the risk of foodborne pathogen outbreaks, improve food safety and quality, and minimize product losses, while reducing waste and maintaining sustainability.</p", "keywords": ["0301 basic medicine", "Polymers", "PFAS", "polyvinil alcohol", "EFSA", "MRSA", "02 engineering and technology", "multiwalled carbon nanotubes NP", "European Food Safety Agency", "perfluoroalkyl substances PGA", "food industry", " food safety", " agriculture", "cinnamon essential oil CNT", "reduced graphene oxide ROS", "biodegradable natural polymers", "Anti-Infective Agents", "polybutylene succinate", "biodegradable natural polymers CEO", "ultraviolet", "poly(glycolic acid) PHB", "generally recognized as safe MSN", "methicillin-resistant Staphylococcus aureus MWCNTs", "PBS", "perfluoroalkyl substances", "CEO", "reactive oxygen species", "2. Zero hunger", "generally recognized as safe", "PHBV", "cinnamon essential oil", "PGA", "Food and Drug Administration", "poly(3-hydroxybutyrate-co-3-hydroxyvalerate)", "Food Packaging", "PLGA", "600", "ROS", "European Food Safety Agency FDA", "Anti-Bacterial Agents", "mesoporous silica nanoparticles MRSA", "[SDV] Life Sciences [q-bio]", "food safety", "GO", "PCL", "nanoparticles PBS", "graphene oxide", "PLA", "shelf life", "poly(lactic acid)", "Food and Drug Administration GO", "0210 nano-technology", "FDA", "poly(\u03b5-caprolactone) PFAS", "nanofillers", "polybutylene succinate PCL", "CNT", "PHB", "graphene oxide GRAS", "multiwalled carbon nanotubes", "methicillin-resistant Staphylococcus aureus", "poly(hydroxybutyrate)", "reduced graphene oxide", "NP", "12. Responsible consumption", "03 medical and health sciences", "poly(hydroxybutyrate) PHBV", "rGO", "GRAS", "nanocomposites", "Animals", "poly(lactide-co-glycolide)", "carbon nanotube", "MSN", "MWCNTs", "mesoporous silica nanoparticles", "foodborne pathogens", "poly(3-hydroxybutyrate-co-3-hydroxyvalerate) PLA", "carbon nanotube EFSA", "664", "polyvinil alcohol rGO", "UV", "poly(lactic acid) PLGA", "reactive oxygen species UV", "food industry", "  food safety", " agriculture", "poly(glycolic acid)", "shelf life BNP", "13. Climate action", "PVA", "Nanoparticles", "nanoparticles", "poly(lactide-co-glycolide) PVA", "poly(\u03b5-caprolactone)"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1541-4337.12727"}, {"href": "https://doi.org/10.1111/1541-4337.12727"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Comprehensive%20Reviews%20in%20Food%20Science%20and%20Food%20Safety", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1541-4337.12727", "name": "item", "description": "10.1111/1541-4337.12727", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1541-4337.12727"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-04T00:00:00Z"}}, {"id": "10.1111/aab.12599", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-24T16:19:16Z", "type": "Journal Article", "created": "2020-04-28", "title": "Coexistent Mediterranean woody species as a driving factor of Phytophthora cinnamomi infectivity and survival", "description": "Abstract<p>The long\uffe2\uff80\uff90term conservation of Mediterranean mixed oak forests is seriously threatened by the massive mortality of Quercus suber caused by the exotic pathogen Phytophthora cinnamomi. This species frequently grows in mixed forests under natural conditions, but nothing is known about how its level of disease might be altered by the diversity and identity of coexisting neighbours varying in susceptibility to the exotic pathogen. Here we analysed the individual and combined effects of Q. suber and the main coexisting tree species (Quercus canariensis and Olea europaea subsp. europaea var. sylvestris) in mixed forests of southern Spain on the production of infective and survival spores of P. cinnamomi. Through in vitro experiments, it was demonstrated that mixtures of Q. suber and Q. canariensis highly stimulated the production of P. cinnamomi zoospores in comparison with both species in monocultures. Olea europaea did not stimulate zoospore production. Under controlled conditions, the initial and final densities of inoculum in soil planted with monocultures of O. europaea and Q. canariensis did not differ. However, inoculum densities significantly decreased along the experiment in Q. suber mixtures with O. europaea and Q. canariensis. Phytophthora cinnamomi was able to infect and cause root rot symptoms on all tree species, including O. europaea var. sylvestris. We concluded that mixed stands of Q. suber and Q. canariensis are able to stimulate P. cinnamomi infectivity and survival much more than monospecific stands, and consequently under favourable conditions for root disease development, the coexistence of Q. suber and Q. canariensis might exacerbate Mediterranean forests decline. This study also constitutes the first report of O. europaea var. sylvestris as host and inductor of P. cinnamomi sporulation under controlled conditions.</p>", "keywords": ["0301 basic medicine", "Europaea var", "0303 health sciences", "03 medical and health sciences", "Quercus suber", "olea europaea subsp", "Quercus canariensis", "Sylvestris", "Olea europaea subsp. europaea var. sylvestris", " Phytophthora interactions", " Quercus canariensis", " Quercus suber", " soil pathogens", "Phytophthora interactions", "15. Life on land", "Soil pathogens"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/aab.12599"}, {"href": "https://doi.org/10.1111/aab.12599"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Annals%20of%20Applied%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/aab.12599", "name": "item", "description": "10.1111/aab.12599", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/aab.12599"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-05-05T00:00:00Z"}}, {"id": "10.1111/nph.16768", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:19:44Z", "type": "Journal Article", "created": "2020-07-03", "title": "Phylogenetic signals and predictability in plant\u2013soil feedbacks", "description": "Summary<p><p>There is strong evidence for a phylogenetic signal in the degree to which species share co\uffe2\uff80\uff90evolved biotic partners and in the outcomes of biotic interactions. This implies there should be a phylogenetic signal in the outcome of feedbacks between plants and the soil microbiota they cultivate. However, attempts to identify a phylogenetic signal in plant\uffe2\uff80\uff93soil feedbacks have produced mixed results.</p><p>Here we clarify how phylogenetic signals could arise in plant\uffe2\uff80\uff93soil feedbacks and use a recent compilation of data from feedback experiments to identify: whether there is a phylogenetic signal in the outcome of plant\uffe2\uff80\uff93soil feedbacks; and whether any signal arises through directional or divergent changes in feedback outcomes with evolutionary time.</p><p>We find strong evidence for a divergent phylogenetic signal in feedback outcomes. Distantly related plant species show more divergent responses to each other\uffe2\uff80\uff99s soil microbiota compared with closely related plant species. The pattern of divergence implies occasional co\uffe2\uff80\uff90evolutionary shifts in how plants interact with soil microbiota, with strongly contrasting feedback responses among some plant lineages.</p><p>Our results highlight that it is difficult to predict feedback outcomes from phylogeny alone, other than to say that more closely related species tend to have more similar responses.</p></p", "keywords": ["580", "2. Zero hunger", "0106 biological sciences", "570", "Research", "pathogens", "plant\u2013soil interactions", "symbioses", "Plants", "15. Life on land", "01 natural sciences", "Feedback", "biotic interactions", "Soil", "Brownian evolution", "international", "pairwise feedbacks", "Plan_S-Compliant_TA", "Phylogeny", "Soil Microbiology", "mutualisms"]}, "links": [{"href": "https://eprints.whiterose.ac.uk/163293/8/nph.16768.pdf"}, {"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.16768"}, {"href": "https://doi.org/10.1111/nph.16768"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.16768", "name": "item", "description": "10.1111/nph.16768", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.16768"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-07-31T00:00:00Z"}}, {"id": "10.1111/nph.18118", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:19:45Z", "type": "Journal Article", "created": "2022-03-26", "title": "Deciphering the role of specialist and generalist plant\u2013microbial interactions as drivers of plant\u2013soil feedback", "description": "Summary<p>Feedback between plants and soil microbial communities can be a powerful driver of vegetation dynamics. Plants elicit changes in the soil microbiome that either promote or suppress conspecifics at the same location, thereby regulating population density\uffe2\uff80\uff90dependence and species co\uffe2\uff80\uff90existence. Such effects are often attributed to the accumulation of host\uffe2\uff80\uff90specific antagonistic or beneficial microbiota in the rhizosphere. However, the identity and host\uffe2\uff80\uff90specificity of the microbial taxa involved are rarely empirically assessed. Here we review the evidence for host\uffe2\uff80\uff90specificity in plant\uffe2\uff80\uff90associated microbes and propose that specific plant\uffe2\uff80\uff93soil feedbacks can also be driven by generalists. We outline the potential mechanisms by which generalist microbial pathogens, mutualists and decomposers can generate differential effects on plant hosts and synthesize existing evidence to predict these effects as a function of plant investments into defence, microbial mutualists and dispersal. Importantly, the capacity of generalist microbiota to drive plant\uffe2\uff80\uff93soil feedbacks depends not only on the traits of individual plants but also on the phylogenetic and functional diversity of plant communities. Identifying factors that promote specialization or generalism in plant\uffe2\uff80\uff93microbial interactions and thereby modulate the impact of microbiota on plant performance will advance our understanding of the mechanisms underlying plant\uffe2\uff80\uff93soil feedback and the ways it contributes to plant co\uffe2\uff80\uff90existence.</p", "keywords": ["0106 biological sciences", "0301 basic medicine", "570", "Physiology", "Plant Science", "litter decomposition", "plant\u2013soil interactions", "root exudates", "Plant Roots", "01 natural sciences", "Feedback", "Soil", "03 medical and health sciences", "Taverne", "functional traits", "Symbiosis", "Phylogeny", "Soil Microbiology", "580", "2. Zero hunger", "generalist microbiota", "Plants", "15. Life on land", "mycorrhizal fungi", "Rhizosphere", "fungal pathogens", "host-specificity"]}, "links": [{"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.18118"}, {"href": "https://doi.org/10.1111/nph.18118"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.18118", "name": "item", "description": "10.1111/nph.18118", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.18118"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-16T00:00:00Z"}}, {"id": "10.1126/sciadv.adj8016", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:19:49Z", "type": "Journal Article", "created": "2023-11-29", "title": "Connecting the multiple dimensions of global soil fungal diversity", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering the management of this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate the distributions and drivers of different levels of taxonomic and phylogenetic diversity of fungi and their ecological groups. We show the impact of precipitation and temperature interactions on local fungal species richness (alpha diversity) across different climates. Our findings reveal how temperature drives fungal compositional turnover (beta diversity) and phylogenetic diversity, linking them with regional species richness (gamma diversity). We integrate fungi into the principles of global biodiversity distribution and present detailed maps for biodiversity conservation and modeling of global ecological processes.</p></article>", "keywords": ["Supplementary Data", "biodiversity", " fungi", " ecology", "QH301 Biology", "Diversity (politics)", "Plant Science", "Biodiversity conservation", "Fungal Diversity", "Agricultural and Biological Sciences", "Soil", "Life", "Sociology", "WATER", "Global biodiversity distribution", "Fungal diversity", "Phylogeny", "Soil Microbiology", "2. Zero hunger", "Multidisciplinary", "Earth", " Environmental", " Ecological", " and Space Sciences", "Geography", "Ecology", "soil fungal diversity", "4. Education", "SPECIES RICHNESS", "Life Sciences", "https://www.science.org/doi/suppl/10.1126/sciadv.adj8016/suppl_file/sciadv.adj8016_sm.pdf", "Biodiversity", "FOS: Sociology", "global biodiversity distribution", "sienet", "https://www.science.org/doi/suppl/10.1126/sciadv.adj8016/suppl_file/sciadv.adj8016_tables_s1_to_s13.zip", "Diversity and Evolution of Fungal Pathogens", "570", "Supplementary Information", "DNA markers", "QH301", "Sequencing high-resolution DNA", "Biochemistry", " Genetics and Molecular Biology", "monimuotoisuus", "Mycorrhizal Fungi and Plant Interactions", "Life Science", "Humans", "14. Life underwater", "General", "Global ecological processes", "Biology", "Ecosystem", "Ecology", " Evolution", " Behavior and Systematics", "global ecological processes", "Soil fungal diversity", "microbiology", "Fungi", "Water", "Cell Biology", "15. Life on land", "luonnon monimuotoisuus", "Agronomy", "biodiversiteetti", "LIFE", "ekosysteemit (ekologia)", "Evolution and Ecology of Endophyte-Grass Symbiosis", "13. Climate action", "Ecology", " evolutionary biology", "Earth and Environmental Sciences", "FOS: Biological sciences", "Anthropology", "ta1181", "biodiversity conservation", "Species richness"]}, "links": [{"href": "https://www.science.org/doi/epdf/10.1126/sciadv.adj8016"}, {"href": "https://www.science.org/doi/pdf/10.1126/sciadv.adj8016"}, {"href": "https://doi.org/10.1126/sciadv.adj8016"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20Advances", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1126/sciadv.adj8016", "name": "item", "description": "10.1126/sciadv.adj8016", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1126/sciadv.adj8016"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-01T00:00:00Z"}}, {"id": "10.15482/usda.adc/1518485", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:20:21Z", "type": "Dataset", "title": "Data from: Genome sequence of the chestnut blight fungus Cryphonectria parasitica EP155: A fundamental resource for an archetypical invasive plant pathogen", "description": "The ascomycete fungus Cryphonectria parasitica is the causal agent of chestnut blight disease. This deadly fungal pathogen was introduced into North America from Asia before the turn of the 20th century, quickly spreading throughout the natural range of the American chestnut tree. In the course of a single generation, chestnut blight destroyed billions of American chestnut trees in forests across North America, driving it almost to extinction. The genome assembly for C. parasitica EP155 (v. 2.0, available at https://mycocosm.jgi.doe.gov/Crypa2/Crypa2.info.html) contains 26 main genome scaffolds totaling 43.9 Mb, and was sequenced at the U.S. Department of Energy Joint Genome Institute. The information and documents contained within this Ag Data Commons dataset provide supplementary data about the EP155 genome assembly, including scaffold summaries, genetic maps, mitochondrial DNA, P450s, secondary metabolite clusters, vegetative incompatibility genes, and transposable elements. These data are freely available for research purposes.", "keywords": ["15. Life on land", "chestnut blight", "Cryphonectria parasitica", "vegetative incompatibility", "transposons", "P450", "secondary metabolite", "mitochondria", "fungi", "Forest &amp; Plant Health", "american chestnut", "genome assembly", "transposable elements", "genetic maps", "NP303", "Cryphonectria parasitica", "fungi", "invasive species", "plant pathogens", "Asia", "Castanea dentata", "trees", "forests", "extinction", "genome assembly", "United States", "silver", "data collection", "mitochondrial DNA", "secondary metabolites", "genes", "transposons", "phylogeny", "cytochrome P-450", "enzymes", "nuclear genome", "mitochondria"]}, "links": [{"href": "https://doi.org/10.15482/usda.adc/1518485"}, {"rel": "self", "type": "application/geo+json", "title": "10.15482/usda.adc/1518485", "name": "item", "description": "10.15482/usda.adc/1518485", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.15482/usda.adc/1518485"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-01-01T00:00:00Z"}}, {"id": "10.3389/fpls.2022.862875", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:21:28Z", "type": "Journal Article", "created": "2022-04-28", "title": "Safety Level of Microorganism-Bearing Products Applied in Soil-Plant Systems", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The indiscriminate use of chemical fertilizers adversely affects ecological health and soil microbiota provoking loss of soil fertility and greater pathogen and pest presence in soil-plant systems, which further reduce the quality of food and human health. Therefore, the sustainability, circular economy, environmental safety of agricultural production, and health concerns made possible the practical realization of eco-friendly biotechnological approaches like organic matter amendments, biofertilizers, biopesticides, and reuse of agro-industrial wastes by applying novel and traditional methods and processes. However, the advancement in the field of Biotechnology/Agriculture is related to the safety of these microorganism-bearing products. While the existing regulations in this field are well-known and are applied in the preparation and application of waste organic matter and microbial inoculants, more attention should be paid to gene transfer, antibiotic resistance, contamination of the workers and environment in farms and biotech-plants, and microbiome changes. These risks should be carefully assessed, and new analytical tools and regulations should be applied to ensure safe and high-quality food and a healthy environment for people working in the field of bio-based soil amendments.</p></article>", "keywords": ["0301 basic medicine", "2. Zero hunger", "risks of contamination", "0303 health sciences", "safety measures and regulations", "Plant culture", "pathogens", "Plant Science", "SB1-1110", "12. Responsible consumption", "3. Good health", "03 medical and health sciences", "13. Climate action", "11. Sustainability", "microbial inoculants", "organic matter"]}, "links": [{"href": "https://doi.org/10.3389/fpls.2022.862875"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fpls.2022.862875", "name": "item", "description": "10.3389/fpls.2022.862875", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fpls.2022.862875"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-28T00:00:00Z"}}, {"id": "10.3390/agronomy11030410", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:21:31Z", "type": "Journal Article", "created": "2021-02-24", "title": "Mycobiome Composition and Diversity under the Long-Term Application of Spent Mushroom Substrate and Chicken Manure", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Waste exogenous organic matter, including spent mushroom substrate (SMS) and chicken manure (CM), can be used as the basis of a soil-improving cropping system in sustainable agriculture. However, there is\u2014as yet\u2014a lack of information about important quality indicators such as the fungal community relative abundance, structure and biodiversity in soils treated with these additives. In this study, the responses of the soil fungal community composition and mycobiome diversity to SMS and CM application compared to the control soil were evaluated using a combination of the following molecular approaches: quantitative polymerase chain reactions, denaturing gradient gel electrophoresis, terminal restriction fragment length polymorphism, and next-generation sequencing. The most abundant phylum for both treatments was Ascomycota, followed by Basidiomycota. The application of SMS and CM increased the abundance of fungi, including Tremellomycetes and Pezizomycetes for the SMS additive, while the Mortierellomycetes, Pezizomycetes, and Leotiomycetes levels increased after CM addition. SMS and CM beneficially reduced the relative abundance of several operational taxonomic units (OTUs) which are potential crop pathogens. The results provide a novel insight into the fungal community associated with organic additives, which should be beneficial in the task of managing the soil mycobiome as well as crop protection and productivity.</p></article>", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "soil fungal diversity", "S", "phytopathogens", "microbiome", "Agriculture", "15. Life on land", "exogenous organic additives", "6. Clean water", "fungal fingerprinting", "03 medical and health sciences", "mycobiota"]}, "links": [{"href": "http://www.mdpi.com/2073-4395/11/3/410/pdf"}, {"href": "https://www.mdpi.com/2073-4395/11/3/410/pdf"}, {"href": "https://doi.org/10.3390/agronomy11030410"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/agronomy11030410", "name": "item", "description": "10.3390/agronomy11030410", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/agronomy11030410"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-24T00:00:00Z"}}, {"id": "10.3390/f9040218", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:21:35Z", "type": "Journal Article", "created": "2018-04-20", "title": "Fine Scale Determinants of Soil Litter Fauna on a Mediterranean Mixed Oak Forest Invaded by the Exotic Soil-Borne Pathogen Phytophthora cinnamomi", "description": "<p>There is growing recognition of the importance of soil fauna for modulating nutrient cycling processes such as litter decomposition. However, little is known about the drivers promoting changes in soil fauna abundance on a local scale. We explored this gap of knowledge in a mixed oak forest of Southern Spain, which is under decline due to the invasion of the exotic soil-borne pathogen Phytophthora cinnamomi. Meso-invertebrate abundance found in soil litter was estimated at the suborder level. We then explored their statistical correlations with respect to light availability, tree and litter characteristics, and P. cinnamomi abundance. Oribatida and Entomobryomporpha were the most abundant groups of Acari and Collembola, respectively. According to their trophic level, predator and detritivore abundances were positively correlated while detritivores were, in turn, positively correlated with pathogen abundance and negatively influenced by light availability and tree defoliation. These overall trends differed between groups. Among detritivores, Diplopoda preferred highly decomposed litter while Oribatida and Psocoptera preferred darker environments and Poduromorpha were selected for environments with lower tree defoliation. Our results show the predominant role of light availability in influencing litter fauna abundances at local scales and suggest that the invasive soil-borne pathogen P. cinnamomi is integrated in these complex relationships.</p>", "keywords": ["2. Zero hunger", "0106 biological sciences", "Invasive species", "detritivores; forest decline; invasive species; invertebrates; light availability; litter depth; mesofauna; soil humidity; soil-borne pathogens; <i>Quercus canarensis</i>; <i>Quercus suber</i>", "Soil humidity", "04 agricultural and veterinary sciences", "15. Life on land", "Forest decline", "Invertebrates", "01 natural sciences", "Mesofauna", "Quercus suber", "Soil-borne pathogens", "Light availability", "0401 agriculture", " forestry", " and fisheries", "Litter depth", "Detritivores", "Quercus canarensis"]}, "links": [{"href": "http://www.mdpi.com/1999-4907/9/4/218/pdf"}, {"href": "https://doi.org/10.3390/f9040218"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Forests", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/f9040218", "name": "item", "description": "10.3390/f9040218", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/f9040218"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-04-19T00:00:00Z"}}, {"id": "10.3390/su13031436", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:21:48Z", "type": "Journal Article", "created": "2021-01-29", "title": "Horticulture and Orchards as New Markets for Manure Valorisation with Less Environmental Impacts", "description": "<p>Animal manure management is a real challenge to minimize environmental impacts and ensure that this valuable material is efficiently used in a circular economy context. One of the main limitations for larger use of animal manure as fertilizer is the availability of land to receive it in an area close to the farm. Indeed, animal manure is traditionally used for cereals and animal feed growth, but the soil area occupied with these crops might not be enough to receive all the manure produced and/or part of this soil might have nutrient contents, namely phosphorous, that do not permit further application of manure. Hence, extra land used for other agricultural activities might be an option. The main objective of the present review was to analyse the constraints and solutions to increase the use of manure in horticulture and orchards. Emphasis was given to the legal framework for manure utilization in the EU that might stimulate or restrain such a solution. The main characteristics of manure that might limit or stimulate manure reuse were also described, and the potential of some treatments to valorise manure was analysed. Several examples of alternative uses of manure in horticulture and orchards were examined, and the society and farmers\uffe2\uff80\uff99 acceptance of the proposed solution was addressed.</p>", "keywords": ["2. Zero hunger", "farmer's acceptance", "pathogens", "water contamination", "04 agricultural and veterinary sciences", "15. Life on land", "ammonia", "01 natural sciences", "12. Responsible consumption", "organic fertilizer", "13. Climate action", "greenhouse gases", "0401 agriculture", " forestry", " and fisheries", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.mdpi.com/2071-1050/13/3/1436/pdf"}, {"href": "https://doi.org/10.3390/su13031436"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Sustainability", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/su13031436", "name": "item", "description": "10.3390/su13031436", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/su13031436"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-01-29T00:00:00Z"}}, {"id": "10449/85395", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:25:40Z", "type": "Report", "title": "Climate change and one health: post-Vaia windthrow as new hotspot for forest zoonoses", "keywords": ["Windstorm", "Ixodes ricinus", "Small mammals", "Zoonotic pathogens", "Italian Alps", "One Health"]}, "links": [{"href": "https://openpub.fmach.it/bitstream/10449/85395/2/2024%20Biodiversity%20change%20Ferrari%2053.pdf"}, {"href": "https://doi.org/10449/85395"}, {"rel": "self", "type": "application/geo+json", "title": "10449/85395", "name": "item", "description": "10449/85395", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10449/85395"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "10.6084/m9.figshare.19169609", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-24T16:25:09Z", "type": "Dataset", "created": "2022-05-16", "title": "Data and code from Semchenko et al. (2022) New Phytologist 10.1111/nph.18118", "description": "Open AccessData and code used in Semchenko M, Barry KE, de Vries FT, Mommer L, Maci\u00e1-Vicente JG (2022) Deciphering the role of specialist and generalist plant\u2013microbial interactions as drivers of plant\u2013soil feedback. New Phytologist, 10.1111/nph.18118 for the analysis of host ranges across plant-associated fungal and oomycete guilds. <br>", "keywords": ["2. Zero hunger", "host specifity", "Ecology", "plant-soil feedback", "FOS: Biological sciences", "mycorrhizas", "15. Life on land", "ecology", "microbial interactions", "plant pathogens", "saprotrophs"], "contacts": [{"organization": "Semchenko, Marina, Barry, Kathryn E., de Vries, Franciska T., Mommer, Liesje, Moora, Mari, Maci\u00e1-Vicente, Jose G.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.6084/m9.figshare.19169609"}, {"rel": "self", "type": "application/geo+json", "title": "10.6084/m9.figshare.19169609", "name": "item", "description": "10.6084/m9.figshare.19169609", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.6084/m9.figshare.19169609"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-01T00:00:00Z"}}, {"id": "10.6084/m9.figshare.19169609.v1", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-24T16:25:09Z", "type": "Dataset", "created": "2022-05-16", "title": "Data and code from Semchenko et al. (2022) New Phytologist 10.1111/nph.18118", "description": "Open AccessData and code used in Semchenko M, Barry KE, de Vries FT, Mommer L, Maci\u00e1-Vicente JG (2022) Deciphering the role of specialist and generalist plant\u2013microbial interactions as drivers of plant\u2013soil feedback. New Phytologist, 10.1111/nph.18118 for the analysis of host ranges across plant-associated fungal and oomycete guilds. <br>", "keywords": ["2. Zero hunger", "host specifity", "Ecology", "plant-soil feedback", "FOS: Biological sciences", "mycorrhizas", "15. Life on land", "ecology", "microbial interactions", "plant pathogens", "saprotrophs"], "contacts": [{"organization": "Semchenko, Marina, Barry, Kathryn E., de Vries, Franciska T., Mommer, Liesje, Moora, Mari, Maci\u00e1-Vicente, Jose G.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.6084/m9.figshare.19169609.v1"}, {"rel": "self", "type": "application/geo+json", "title": "10.6084/m9.figshare.19169609.v1", "name": "item", "description": "10.6084/m9.figshare.19169609.v1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.6084/m9.figshare.19169609.v1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-01T00:00:00Z"}}, {"id": "10481/97198", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:25:41Z", "type": "Journal Article", "created": "2022-04-28", "title": "Safety Level of Microorganism-Bearing Products Applied in Soil-Plant Systems", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The indiscriminate use of chemical fertilizers adversely affects ecological health and soil microbiota provoking loss of soil fertility and greater pathogen and pest presence in soil-plant systems, which further reduce the quality of food and human health. Therefore, the sustainability, circular economy, environmental safety of agricultural production, and health concerns made possible the practical realization of eco-friendly biotechnological approaches like organic matter amendments, biofertilizers, biopesticides, and reuse of agro-industrial wastes by applying novel and traditional methods and processes. However, the advancement in the field of Biotechnology/Agriculture is related to the safety of these microorganism-bearing products. While the existing regulations in this field are well-known and are applied in the preparation and application of waste organic matter and microbial inoculants, more attention should be paid to gene transfer, antibiotic resistance, contamination of the workers and environment in farms and biotech-plants, and microbiome changes. These risks should be carefully assessed, and new analytical tools and regulations should be applied to ensure safe and high-quality food and a healthy environment for people working in the field of bio-based soil amendments.</p></article>", "keywords": ["0301 basic medicine", "2. Zero hunger", "risks of contamination", "0303 health sciences", "safety measures and regulations", "Plant culture", "pathogens", "Plant Science", "SB1-1110", "12. Responsible consumption", "3. Good health", "03 medical and health sciences", "13. Climate action", "11. Sustainability", "microbial inoculants", "organic matter"]}, "links": [{"href": "https://doi.org/10481/97198"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10481/97198", "name": "item", "description": "10481/97198", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10481/97198"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-28T00:00:00Z"}}, {"id": "11245.1/69372ae1-13cd-4095-b06a-b9146c8552fd", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:25:49Z", "type": "Journal Article", "created": "2022-03-26", "title": "Deciphering the role of specialist and generalist plant\u2013microbial interactions as drivers of plant\u2013soil feedback", "description": "Summary<p>Feedback between plants and soil microbial communities can be a powerful driver of vegetation dynamics. Plants elicit changes in the soil microbiome that either promote or suppress conspecifics at the same location, thereby regulating population density\uffe2\uff80\uff90dependence and species co\uffe2\uff80\uff90existence. Such effects are often attributed to the accumulation of host\uffe2\uff80\uff90specific antagonistic or beneficial microbiota in the rhizosphere. However, the identity and host\uffe2\uff80\uff90specificity of the microbial taxa involved are rarely empirically assessed. Here we review the evidence for host\uffe2\uff80\uff90specificity in plant\uffe2\uff80\uff90associated microbes and propose that specific plant\uffe2\uff80\uff93soil feedbacks can also be driven by generalists. We outline the potential mechanisms by which generalist microbial pathogens, mutualists and decomposers can generate differential effects on plant hosts and synthesize existing evidence to predict these effects as a function of plant investments into defence, microbial mutualists and dispersal. Importantly, the capacity of generalist microbiota to drive plant\uffe2\uff80\uff93soil feedbacks depends not only on the traits of individual plants but also on the phylogenetic and functional diversity of plant communities. Identifying factors that promote specialization or generalism in plant\uffe2\uff80\uff93microbial interactions and thereby modulate the impact of microbiota on plant performance will advance our understanding of the mechanisms underlying plant\uffe2\uff80\uff93soil feedback and the ways it contributes to plant co\uffe2\uff80\uff90existence.</p", "keywords": ["0106 biological sciences", "0301 basic medicine", "570", "Physiology", "Plant Science", "litter decomposition", "plant\u2013soil interactions", "root exudates", "Plant Roots", "01 natural sciences", "Feedback", "Soil", "03 medical and health sciences", "Taverne", "functional traits", "Symbiosis", "Phylogeny", "Soil Microbiology", "580", "2. Zero hunger", "generalist microbiota", "Plants", "15. Life on land", "mycorrhizal fungi", "Rhizosphere", "fungal pathogens", "host-specificity"]}, "links": [{"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.18118"}, {"href": "https://doi.org/11245.1/69372ae1-13cd-4095-b06a-b9146c8552fd"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "11245.1/69372ae1-13cd-4095-b06a-b9146c8552fd", "name": "item", "description": "11245.1/69372ae1-13cd-4095-b06a-b9146c8552fd", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/11245.1/69372ae1-13cd-4095-b06a-b9146c8552fd"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-16T00:00:00Z"}}, {"id": "11343/271785", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:25:50Z", "type": "Journal Article", "created": "2020-07-03", "title": "Phylogenetic signals and predictability in plant\u2013soil feedbacks", "description": "Summary                   <p>                                                                     <p>There is strong evidence for a phylogenetic signal in the degree to which species share co\uffe2\uff80\uff90evolved biotic partners and in the outcomes of biotic interactions. This implies there should be a phylogenetic signal in the outcome of feedbacks between plants and the soil microbiota they cultivate. However, attempts to identify a phylogenetic signal in plant\uffe2\uff80\uff93soil feedbacks have produced mixed results.</p>                                                                       <p>Here we clarify how phylogenetic signals could arise in plant\uffe2\uff80\uff93soil feedbacks and use a recent compilation of data from feedback experiments to identify: whether there is a phylogenetic signal in the outcome of plant\uffe2\uff80\uff93soil feedbacks; and whether any signal arises through directional or divergent changes in feedback outcomes with evolutionary time.</p>                                                                       <p>We find strong evidence for a divergent phylogenetic signal in feedback outcomes. Distantly related plant species show more divergent responses to each other\uffe2\uff80\uff99s soil microbiota compared with closely related plant species. The pattern of divergence implies occasional co\uffe2\uff80\uff90evolutionary shifts in how plants interact with soil microbiota, with strongly contrasting feedback responses among some plant lineages.</p>                                                                       <p>Our results highlight that it is difficult to predict feedback outcomes from phylogeny alone, other than to say that more closely related species tend to have more similar responses.</p>                                                               </p", "keywords": ["580", "0106 biological sciences", "2. Zero hunger", "570", "Research", "pathogens", "plant\u2013soil interactions", "symbioses", "Plants", "15. Life on land", "01 natural sciences", "Feedback", "biotic interactions", "Soil", "Brownian evolution", "international", "pairwise feedbacks", "Plan_S-Compliant_TA", "Phylogeny", "Soil Microbiology", "mutualisms"]}, "links": [{"href": "https://eprints.whiterose.ac.uk/163293/8/nph.16768.pdf"}, {"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.16768"}, {"href": "https://doi.org/11343/271785"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "11343/271785", "name": "item", "description": "11343/271785", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/11343/271785"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-07-31T00:00:00Z"}}, {"id": "1959.7/uws:55940", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:26:11Z", "type": "Journal Article", "created": "2020-05-11", "title": "The proportion of soil-borne pathogens increases with warming at the global scale", "description": "Open AccessPeer reviewed", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Climate and land-use changes", "Warmer temperatures", "Ecolog\u00eda", "15. Life on land", "soilborne plant pathogens", "climatic changes", "Global distribution", "03 medical and health sciences", "13. Climate action", "XXXXXX - Unknown", "Soil-borne pathogens"]}, "links": [{"href": "http://www.nature.com/articles/s41558-020-0759-3.pdf"}, {"href": "https://doi.org/1959.7/uws:55940"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Climate%20Change", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "1959.7/uws:55940", "name": "item", "description": "1959.7/uws:55940", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/1959.7/uws:55940"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-05-11T00:00:00Z"}}, {"id": "20.500.11850/497409", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:26:20Z", "type": "Journal Article", "created": "2021-07-07", "title": "Root anatomy and soil resource capture", "description": "Abstract                 Background                 <p>Suboptimal water and nutrient availability are primary constraints in global agriculture. Root anatomy plays key roles in soil resource acquisition. In this article we summarize evidence that root anatomical phenotypes present opportunities for crop breeding.</p>                                Scope                 <p>Root anatomical phenotypes influence soil resource acquisition by regulating the metabolic cost of soil exploration, exploitation of the rhizosphere, the penetration of hard soil domains, the axial and radial transport of water, and interactions with soil biota including mycorrhizal fungi, pathogens, insects, and the rhizosphere microbiome. For each of these topics we provide examples of anatomical phenotypes which merit attention as selection targets for crop improvement. Several cross-cutting issues are addressed including the importance of phenotypic plasticity, integrated phenotypes, C sequestration, in silico modeling, and novel methods to phenotype root anatomy including image analysis tools.</p>                                Conclusions                 <p>An array of anatomical phenes have substantial importance for the acquisition of water and nutrients. Substantial phenotypic variation exists in crop germplasm. New tools and methods are making it easier to phenotype root anatomy, determine its genetic control, and understand its utility for plant fitness. Root anatomical phenotypes are underutilized yet attractive breeding targets for the development of the efficient, resilient crops urgently needed in global agriculture.</p>", "keywords": ["Carbon sequestration", "2. Zero hunger", "0106 biological sciences", "0301 basic medicine", "Root; Anatomy; Water; Nutrients; Transport; Insects; Pathogens; Mycorrhiza; Carbon sequestration; Modeling; Image analysis; Plasticity", "Plasticity", "Modeling", "Water", "Transport", "Nutrients", "15. Life on land", "01 natural sciences", "Image analysis", "Insects", "03 medical and health sciences", "Root", "Anatomy", "Pathogens", "Mycorrhiza"]}, "links": [{"href": "https://doi.org/20.500.11850/497409"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "20.500.11850/497409", "name": "item", "description": "20.500.11850/497409", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/20.500.11850/497409"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-07-07T00:00:00Z"}}, {"id": "2164/23373", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:26:36Z", "type": "Journal Article", "created": "2023-11-29", "title": "Connecting the multiple dimensions of global soil fungal diversity", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering the management of this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate the distributions and drivers of different levels of taxonomic and phylogenetic diversity of fungi and their ecological groups. We show the impact of precipitation and temperature interactions on local fungal species richness (alpha diversity) across different climates. Our findings reveal how temperature drives fungal compositional turnover (beta diversity) and phylogenetic diversity, linking them with regional species richness (gamma diversity). We integrate fungi into the principles of global biodiversity distribution and present detailed maps for biodiversity conservation and modeling of global ecological processes.</p></article>", "keywords": ["Supplementary Data", "QH301 Biology", "Diversity (politics)", "Plant Science", "Biodiversity conservation", "Fungal Diversity", "Agricultural and Biological Sciences", "Soil", "Life", "Sociology", "WATER", "Global biodiversity distribution", "Fungal diversity", "Phylogeny", "Soil Microbiology", "2. Zero hunger", "Multidisciplinary", "Earth", " Environmental", " Ecological", " and Space Sciences", "Geography", "Ecology", "soil fungal diversity", "4. Education", "SPECIES RICHNESS", "Life Sciences", "https://www.science.org/doi/suppl/10.1126/sciadv.adj8016/suppl_file/sciadv.adj8016_sm.pdf", "Biodiversity", "FOS: Sociology", "global biodiversity distribution", "sienet", "https://www.science.org/doi/suppl/10.1126/sciadv.adj8016/suppl_file/sciadv.adj8016_tables_s1_to_s13.zip", "Diversity and Evolution of Fungal Pathogens", "570", "Supplementary Information", "DNA markers", "QH301", "Sequencing high-resolution DNA", "Biochemistry", " Genetics and Molecular Biology", "monimuotoisuus", "Mycorrhizal Fungi and Plant Interactions", "Life Science", "Humans", "14. Life underwater", "General", "Global ecological processes", "Biology", "Ecosystem", "Ecology", " Evolution", " Behavior and Systematics", "global ecological processes", "Soil fungal diversity", "microbiology", "Fungi", "Water", "Cell Biology", "15. Life on land", "luonnon monimuotoisuus", "Agronomy", "biodiversiteetti", "LIFE", "ekosysteemit (ekologia)", "Evolution and Ecology of Endophyte-Grass Symbiosis", "13. Climate action", "Ecology", " evolutionary biology", "Earth and Environmental Sciences", "FOS: Biological sciences", "Anthropology", "ta1181", "biodiversity conservation", "CBCE", "Species richness"]}, "links": [{"href": "https://www.science.org/doi/epdf/10.1126/sciadv.adj8016"}, {"href": "https://iris.unica.it/bitstream/11584/447894/1/Mikryukov%20et%20al_Science%20Advances%202023.pdf"}, {"href": "https://www.science.org/doi/pdf/10.1126/sciadv.adj8016"}, {"href": "https://doi.org/2164/23373"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20Advances", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2164/23373", "name": "item", "description": "2164/23373", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2164/23373"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-01T00:00:00Z"}}, {"id": "3132814372", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:27:15Z", "type": "Journal Article", "created": "2021-02-25", "title": "Mycobiome Composition and Diversity under the Long-Term Application of Spent Mushroom Substrate and Chicken Manure", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Waste exogenous organic matter, including spent mushroom substrate (SMS) and chicken manure (CM), can be used as the basis of a soil-improving cropping system in sustainable agriculture. However, there is\u2014as yet\u2014a lack of information about important quality indicators such as the fungal community relative abundance, structure and biodiversity in soils treated with these additives. In this study, the responses of the soil fungal community composition and mycobiome diversity to SMS and CM application compared to the control soil were evaluated using a combination of the following molecular approaches: quantitative polymerase chain reactions, denaturing gradient gel electrophoresis, terminal restriction fragment length polymorphism, and next-generation sequencing. The most abundant phylum for both treatments was Ascomycota, followed by Basidiomycota. The application of SMS and CM increased the abundance of fungi, including Tremellomycetes and Pezizomycetes for the SMS additive, while the Mortierellomycetes, Pezizomycetes, and Leotiomycetes levels increased after CM addition. SMS and CM beneficially reduced the relative abundance of several operational taxonomic units (OTUs) which are potential crop pathogens. The results provide a novel insight into the fungal community associated with organic additives, which should be beneficial in the task of managing the soil mycobiome as well as crop protection and productivity.</p></article>", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "soil fungal diversity", "S", "phytopathogens", "microbiome", "Agriculture", "15. Life on land", "exogenous organic additives", "6. Clean water", "fungal fingerprinting", "03 medical and health sciences", "mycobiota"]}, "links": [{"href": "http://www.mdpi.com/2073-4395/11/3/410/pdf"}, {"href": "https://www.mdpi.com/2073-4395/11/3/410/pdf"}, {"href": "https://doi.org/3132814372"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3132814372", "name": "item", "description": "3132814372", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3132814372"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-24T00:00:00Z"}}, {"id": "3135523176", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:27:15Z", "type": "Journal Article", "created": "2021-03-05", "title": "Antimicrobial nanoparticles and biodegradable polymer composites for active food packaging applications", "description": "Abstract<p>The food industry faces numerous challenges to assure provision of tasty and convenient food that possesses extended shelf life and shows long\uffe2\uff80\uff90term high\uffe2\uff80\uff90quality preservation. Research and development of antimicrobial materials for food applications have provided active antibacterial packaging technologies that are able to meet these challenges. Furthermore, consumers expect and demand sustainable packaging materials that would reduce environmental problems associated with plastic waste. In this review, we discuss antimicrobial composite materials for active food packaging applications that combine highly efficient antibacterial nanoparticles (i.e., metal, metal oxide, mesoporous silica and graphene\uffe2\uff80\uff90based nanomaterials) with biodegradable and environmentally friendly green polymers (i.e., gelatin, alginate, cellulose, and chitosan) obtained from plants, bacteria, and animals. In addition, innovative syntheses and processing techniques used to obtain active and safe packaging are showcased. Implementation of such green active packaging can significantly reduce the risk of foodborne pathogen outbreaks, improve food safety and quality, and minimize product losses, while reducing waste and maintaining sustainability.</p", "keywords": ["0301 basic medicine", "Polymers", "PFAS", "polyvinil alcohol", "MRSA", "EFSA", "02 engineering and technology", "multiwalled carbon nanotubes NP", "European Food Safety Agency", "perfluoroalkyl substances PGA", "food industry", " food safety", " agriculture", "cinnamon essential oil CNT", "biodegradable natural polymers", "reduced graphene oxide ROS", "Anti-Infective Agents", "polybutylene succinate", "biodegradable natural polymers CEO", "ultraviolet", "poly(glycolic acid) PHB", "methicillin-resistant Staphylococcus aureus MWCNTs", "generally recognized as safe MSN", "PBS", "perfluoroalkyl substances", "reactive oxygen species", "CEO", "2. Zero hunger", "generally recognized as safe", "PHBV", "PGA", "cinnamon essential oil", "poly(3-hydroxybutyrate-co-3-hydroxyvalerate)", "Food and Drug Administration", "Food Packaging", "PLGA", "600", "ROS", "European Food Safety Agency FDA", "Anti-Bacterial Agents", "mesoporous silica nanoparticles MRSA", "[SDV] Life Sciences [q-bio]", "food safety", "PCL", "GO", "PLA", "nanoparticles PBS", "graphene oxide", "shelf life", "poly(lactic acid)", "Food and Drug Administration GO", "0210 nano-technology", "FDA", "poly(\u03b5-caprolactone) PFAS", "nanofillers", "polybutylene succinate PCL", "CNT", "PHB", "graphene oxide GRAS", "multiwalled carbon nanotubes", "methicillin-resistant Staphylococcus aureus", "poly(hydroxybutyrate)", "reduced graphene oxide", "NP", "12. Responsible consumption", "03 medical and health sciences", "poly(hydroxybutyrate) PHBV", "rGO", "GRAS", "nanocomposites", "Animals", "poly(lactide-co-glycolide)", "MWCNTs", "MSN", "carbon nanotube", "mesoporous silica nanoparticles", "foodborne pathogens", "poly(3-hydroxybutyrate-co-3-hydroxyvalerate) PLA", "carbon nanotube EFSA", "664", "UV", "polyvinil alcohol rGO", "poly(lactic acid) PLGA", "reactive oxygen species UV", "poly(glycolic acid)", "shelf life BNP", "13. Climate action", "PVA", "Nanoparticles", "nanoparticles", "poly(lactide-co-glycolide) PVA", "poly(\u03b5-caprolactone)"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1541-4337.12727"}, {"href": "https://doi.org/3135523176"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Comprehensive%20Reviews%20in%20Food%20Science%20and%20Food%20Safety", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3135523176", "name": "item", "description": "3135523176", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3135523176"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-04T00:00:00Z"}}, {"id": "33665972", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-24T16:27:29Z", "type": "Journal Article", "created": "2021-03-05", "title": "Antimicrobial nanoparticles and biodegradable polymer composites for active food packaging applications", "description": "Abstract                   <p>The food industry faces numerous challenges to assure provision of tasty and convenient food that possesses extended shelf life and shows long\uffe2\uff80\uff90term high\uffe2\uff80\uff90quality preservation. Research and development of antimicrobial materials for food applications have provided active antibacterial packaging technologies that are able to meet these challenges. Furthermore, consumers expect and demand sustainable packaging materials that would reduce environmental problems associated with plastic waste. In this review, we discuss antimicrobial composite materials for active food packaging applications that combine highly efficient antibacterial nanoparticles (i.e., metal, metal oxide, mesoporous silica and graphene\uffe2\uff80\uff90based nanomaterials) with biodegradable and environmentally friendly green polymers (i.e., gelatin, alginate, cellulose, and chitosan) obtained from plants, bacteria, and animals. In addition, innovative syntheses and processing techniques used to obtain active and safe packaging are showcased. Implementation of such green active packaging can significantly reduce the risk of foodborne pathogen outbreaks, improve food safety and quality, and minimize product losses, while reducing waste and maintaining sustainability.</p", "keywords": ["0301 basic medicine", "Polymers", "PFAS", "polyvinil alcohol", "MRSA", "EFSA", "02 engineering and technology", "multiwalled carbon nanotubes NP", "European Food Safety Agency", "perfluoroalkyl substances PGA", "cinnamon essential oil CNT", "biodegradable natural polymers", "reduced graphene oxide ROS", "Anti-Infective Agents", "polybutylene succinate", "biodegradable natural polymers CEO", "ultraviolet", "poly(glycolic acid) PHB", "methicillin-resistant Staphylococcus aureus MWCNTs", "generally recognized as safe MSN", "PBS", "perfluoroalkyl substances", "reactive oxygen species", "CEO", "2. Zero hunger", "generally recognized as safe", "PHBV", "PGA", "cinnamon essential oil", "poly(3-hydroxybutyrate-co-3-hydroxyvalerate)", "Food and Drug Administration", "Food Packaging", "PLGA", "600", "ROS", "European Food Safety Agency FDA", "Anti-Bacterial Agents", "mesoporous silica nanoparticles MRSA", "[SDV] Life Sciences [q-bio]", "food safety", "PCL", "GO", "PLA", "nanoparticles PBS", "graphene oxide", "shelf life", "poly(lactic acid)", "Food and Drug Administration GO", "0210 nano-technology", "FDA", "poly(\u03b5-caprolactone) PFAS", "nanofillers", "polybutylene succinate PCL", "CNT", "PHB", "graphene oxide GRAS", "multiwalled carbon nanotubes", "methicillin-resistant Staphylococcus aureus", "poly(hydroxybutyrate)", "reduced graphene oxide", "NP", "12. Responsible consumption", "03 medical and health sciences", "poly(hydroxybutyrate) PHBV", "rGO", "GRAS", "nanocomposites", "Animals", "poly(lactide-co-glycolide)", "MWCNTs", "MSN", "carbon nanotube", "mesoporous silica nanoparticles", "foodborne pathogens", "poly(3-hydroxybutyrate-co-3-hydroxyvalerate) PLA", "carbon nanotube EFSA", "664", "UV", "polyvinil alcohol rGO", "poly(lactic acid) PLGA", "reactive oxygen species UV", "poly(glycolic acid)", "shelf life BNP", "13. Climate action", "PVA", "Nanoparticles", "nanoparticles", "poly(lactide-co-glycolide) PVA", "poly(\u03b5-caprolactone)"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/1541-4337.12727"}, {"href": "https://doi.org/33665972"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Comprehensive%20Reviews%20in%20Food%20Science%20and%20Food%20Safety", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "33665972", "name": "item", "description": "33665972", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/33665972"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-04T00:00:00Z"}}, {"id": "116d7828-7f69-4896-8d7a-09585f70d493", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[13.46, 53.29], [13.46, 53.43], [13.88, 53.43], [13.88, 53.29], [13.46, 53.29]]]}, "properties": {"themes": [{"concepts": [{"id": "farming"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "Soil"}, {"id": "Fusarium"}, {"id": "Fusarium culmorum"}, {"id": "Fusarium equiseti"}, {"id": "Fusarium oxysporum"}, {"id": "Fusarium sporotrichioides"}, {"id": "Gibberella zeae"}, {"id": "Fusarium solani"}, {"id": "Alternaria"}, {"id": "winter wheat"}, {"id": "weeds"}, {"id": "mycotoxins"}, {"id": "trichothecenes"}, {"id": "zearalenone"}, {"id": "quantitative polymerase chain reaction"}, {"id": "kettle holes"}, {"id": "glacial lakes"}, {"id": "ponds"}, {"id": "pathogenic fungi"}, {"id": "pathogens"}, {"id": "agricultural sciences"}, {"id": "agricultural landscape"}], "scheme": "AGROVOC Multilingual agricultural thesaurus"}, {"concepts": [{"id": "opendata"}], "scheme": "Individual"}, {"concepts": [{"id": "Boden"}, {"id": "Lebensr\u00e4ume und Biotope"}, {"id": "Verteilung der Arten"}, {"id": "Landwirtschaft"}, {"id": "Wissenschaft"}, {"id": "Bodennutzung"}], "scheme": "GEMET - INSPIRE themes, version 1.0"}, {"concepts": [{"id": "Germany"}, {"id": "Brandenburg"}, {"id": "Uckermark"}, {"id": "Quillow"}], "scheme": "individual"}], "rights": "Restrictions applied to assure the protection of privacy or intellectual property, and any special restrictions or limitations or warnings on using the resource or metadata. Reports, articles, papers, scientific and non - scientific works of any form, including tables, maps, or any other kind of output, in printed or electronic form, based in whole or in part on the data supplied, must contain an acknowledgement of the form: \"Data reused from the BonaRes Data Centre www.bonares.de. This data were created as part of the ZALF Datenerfassung's research activities.\" Although every care has been taken in preparing and testing the data, the ZALF Datenerfassung and the BonaRes Data Centre cannot guarantee that the data are correct; neither does the ZALF Datenerfassung and the BonaRes Data Centre accept any liability whatsoever for any error, missing data or omission in the data, or for any loss or damage arising from its use. The ZALF Datenerfassung and BonaRes Data Centre will not be responsible for any direct or indirect use which might be made of the data.", "updated": "2023-11-14", "type": "Dataset", "created": "2023-07-20", "language": "eng", "title": "Fusarium abundance and diversity and Alternaria abundance on weeds and wheat ears in transitions zones between kettle hole edge and field and field edge and field.       - Abundance of Fusaria and Alternaria on weed plants", "description": "The table contains the abundances of Fusarium and Alternaria detected on weed plants determined by qPCR and culture-dependent methods (potato dextrose agar with chloramphenicol). \n\nGeneral description see mother table: (https://doi.org/10.4228/zalf-zh6h-df38); Related datasets are listed in the metadata element 'Related Identifier'.\nDataset version 1.0", "formats": [{"name": "CSV"}], "keywords": ["Soil", "Fusarium", "Fusarium culmorum", "Fusarium equiseti", "Fusarium oxysporum", "Fusarium sporotrichioides", "Gibberella zeae", "Fusarium solani", "Alternaria", "winter wheat", "weeds", "mycotoxins", "trichothecenes", "zearalenone", "quantitative polymerase chain reaction", "kettle holes", "glacial lakes", "ponds", "pathogenic fungi", "pathogens", "agricultural sciences", "agricultural landscape", "opendata", "Boden", "Lebensr\u00e4ume und Biotope", "Verteilung der Arten", "Landwirtschaft", "Wissenschaft", "Bodennutzung", "Germany", "Brandenburg", "Uckermark", "Quillow"], "contacts": [{"name": "Leibniz Centre for Agricultural Landscape Research", "organization": "ZALF", "position": "Research Platform 'Data Analysis & Simulation' - Workgroup Research Data Management", "roles": ["publisher"], "phones": [{"value": "+49 33432 82 300"}], "emails": [{"value": "dataservice@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Strasse 84"], "city": "M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": "15374", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Marina Gerling", "organization": "Leibniz Centre for Agricultural Landscape Research", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Marina.Gerling@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Str. 84"], "city": "D-15374 M\u00fcnchberg", "administrativeArea": "Brandenburg", "postalCode": null, "country": "Germany"}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0001-7039-5499", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Marina M\u00fcller", "organization": "Leibniz Centre for Agricultural Landscape Research", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "mmueller@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Str.84"], "city": "D-14374 M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": null, "country": "Germany"}], "links": [{"href": null}]}, {"name": "Michael Glemnitz", "organization": "Leibniz Centre for Agricultural Landscape Research", "position": null, "roles": ["projectLeader"], "phones": [{"value": null}], "emails": [{"value": "mglemnitz@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Str.84"], "city": "D-15374 M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": null, "country": "Germany"}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0002-6506-1889", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Grit von der Waydbrink", "organization": "Leibniz Centre for Agricultural Landscape Research", "position": null, "roles": ["dataCurator"], "phones": [{"value": null}], "emails": [{"value": "grit.waydbrink@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Str. 84"], "city": "D-15374 M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": null, "country": "Germany"}], "links": [{"href": null}]}, {"organization": "Leibniz Centre for Agricultural Landscape Research", "roles": ["contributor"]}], "title_alternate": "Data collection: Part 1/3 ,table: Abundance of Fusaria and Alternaria on weed plants"}, "links": [{"href": "https://maps.bonares.de/mapapps/resources/apps/bonares/index.html?lang=en&mid=616f4686-078a-4d60-9fd5-3629389010a1", "rel": "information"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/616f4686-078a-4d60-9fd5-3629389010a1", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "116d7828-7f69-4896-8d7a-09585f70d493", "name": "item", "description": "116d7828-7f69-4896-8d7a-09585f70d493", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/116d7828-7f69-4896-8d7a-09585f70d493"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"interval": ["2019-05-01T00:00:00Z", "2020-07-19T00:00:00Z"]}}, {"id": "307f5669-0ada-416f-9dda-27d71b0b7b75", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[13.46, 53.29], [13.46, 53.43], [13.88, 53.43], [13.88, 53.29], [13.46, 53.29]]]}, "properties": {"themes": [{"concepts": [{"id": "farming"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "Soil"}, {"id": "Fusarium"}, {"id": "Fusarium culmorum"}, {"id": "Fusarium equiseti"}, {"id": "Fusarium oxysporum"}, {"id": "Fusarium sporotrichioides"}, {"id": "Gibberella zeae"}, {"id": "Fusarium solani"}, {"id": "Alternaria"}, {"id": "winter wheat"}, {"id": "weeds"}, {"id": "mycotoxins"}, {"id": "trichothecenes"}, {"id": "zearalenone"}, {"id": "quantitative polymerase chain reaction"}, {"id": "kettle holes"}, {"id": "glacial lakes"}, {"id": "ponds"}, {"id": "pathogenic fungi"}, {"id": "pathogens"}, {"id": "agricultural sciences"}, {"id": "agricultural landscape"}], "scheme": "AGROVOC Multilingual agricultural thesaurus"}, {"concepts": [{"id": "opendata"}], "scheme": "Individual"}, {"concepts": [{"id": "Boden"}, {"id": "Lebensr\u00e4ume und Biotope"}, {"id": "Verteilung der Arten"}, {"id": "Landwirtschaft"}, {"id": "Wissenschaft"}, {"id": "Bodennutzung"}], "scheme": "GEMET - INSPIRE themes, version 1.0"}, {"concepts": [{"id": "Germany"}, {"id": "Brandenburg"}, {"id": "Uckermark"}, {"id": "Quillow"}], "scheme": "individual"}], "rights": "Restrictions applied to assure the protection of privacy or intellectual property, and any special restrictions or limitations or warnings on using the resource or metadata. Reports, articles, papers, scientific and non - scientific works of any form, including tables, maps, or any other kind of output, in printed or electronic form, based in whole or in part on the data supplied, must contain an acknowledgement of the form: \"Data reused from the BonaRes Data Centre www.bonares.de. This data were created as part of the ZALF Datenerfassung's research activities.\" Although every care has been taken in preparing and testing the data, the ZALF Datenerfassung and the BonaRes Data Centre cannot guarantee that the data are correct; neither does the ZALF Datenerfassung and the BonaRes Data Centre accept any liability whatsoever for any error, missing data or omission in the data, or for any loss or damage arising from its use. The ZALF Datenerfassung and BonaRes Data Centre will not be responsible for any direct or indirect use which might be made of the data.", "updated": "2023-11-14", "type": "Dataset", "created": "2023-07-20", "language": "eng", "title": "Fusarium abundance and diversity and Alternaria abundance on weeds and wheat ears in transitions zones between kettle hole edge and field and field edge and field.       - Mycotoxin content of the harvest samples", "description": "The table shows the concentrations of the mycotoxins deoxynivalenol DON and zearalenone ZEA in the wheat crop samples at the different transect points. \n\nGeneral description see mother table: (https://doi.org/10.4228/zalf-zh6h-df38); Related datasets are listed in the metadata element 'Related Identifier'.\nDataset version 1.0", "formats": [{"name": "CSV"}], "keywords": ["Soil", "Fusarium", "Fusarium culmorum", "Fusarium equiseti", "Fusarium oxysporum", "Fusarium sporotrichioides", "Gibberella zeae", "Fusarium solani", "Alternaria", "winter wheat", "weeds", "mycotoxins", "trichothecenes", "zearalenone", "quantitative polymerase chain reaction", "kettle holes", "glacial lakes", "ponds", "pathogenic fungi", "pathogens", "agricultural sciences", "agricultural landscape", "opendata", "Boden", "Lebensr\u00e4ume und Biotope", "Verteilung der Arten", "Landwirtschaft", "Wissenschaft", "Bodennutzung", "Germany", "Brandenburg", "Uckermark", "Quillow"], "contacts": [{"name": "Leibniz Centre for Agricultural Landscape Research", "organization": "ZALF", "position": "Research Platform 'Data Analysis & Simulation' - Workgroup Research Data Management", "roles": ["publisher"], "phones": [{"value": "+49 33432 82 300"}], "emails": [{"value": "dataservice@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Strasse 84"], "city": "M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": "15374", "country": "Germany"}], "links": [{"href": null}]}, {"name": "Marina Gerling", "organization": "Leibniz Centre for Agricultural Landscape Research", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "Marina.Gerling@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Str. 84"], "city": "D-15374 M\u00fcnchberg", "administrativeArea": "Brandenburg", "postalCode": null, "country": "Germany"}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0001-7039-5499", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Marina M\u00fcller", "organization": "Leibniz Centre for Agricultural Landscape Research", "position": null, "roles": ["author"], "phones": [{"value": null}], "emails": [{"value": "mmueller@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Str.84"], "city": "D-14374 M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": null, "country": "Germany"}], "links": [{"href": null}]}, {"name": "Michael Glemnitz", "organization": "Leibniz Centre for Agricultural Landscape Research", "position": null, "roles": ["projectLeader"], "phones": [{"value": null}], "emails": [{"value": "mglemnitz@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Str.84"], "city": "D-15374 M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": null, "country": "Germany"}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "0000-0002-6506-1889", "name_url": "", "description": "ORCID", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Grit von der Waydbrink", "organization": "Leibniz Centre for Agricultural Landscape Research", "position": null, "roles": ["dataCurator"], "phones": [{"value": null}], "emails": [{"value": "grit.waydbrink@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Str. 84"], "city": "D-15374 M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": null, "country": "Germany"}], "links": [{"href": null}]}, {"organization": "Leibniz Centre for Agricultural Landscape Research", "roles": ["contributor"]}], "title_alternate": "Data collection: Part 3/3 ,table: Mycotoxin content of the harvest samples"}, "links": [{"href": "https://maps.bonares.de/mapapps/resources/apps/bonares/index.html?lang=en&mid=616f4686-078a-4d60-9fd5-3629389010a1", "rel": "information"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/616f4686-078a-4d60-9fd5-3629389010a1", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "307f5669-0ada-416f-9dda-27d71b0b7b75", "name": "item", "description": "307f5669-0ada-416f-9dda-27d71b0b7b75", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/307f5669-0ada-416f-9dda-27d71b0b7b75"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"interval": ["2019-05-01T00:00:00Z", "2020-07-19T00:00:00Z"]}}, {"id": "PMC9052558", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-24T16:29:48Z", "type": "Journal Article", "created": "2022-04-28", "title": "Insights into the microbiome assembly during different growth stages and storage of strawberry plants", "description": "AbstractBackground<p>Microbiome assembly was identified as an important factor for plant growth and health, but this process is largely unknown, especially for the fruit microbiome. Therefore, we analyzed strawberry plants of two cultivars by focusing on microbiome tracking during the different growth stages and storage using amplicon sequencing, qPCR, and microscopic approaches.</p>Results<p>Strawberry plants carried a highly diverse microbiome, therein the bacterial familiesSphingomonadaceae(25%),Pseudomonadaceae(17%), andBurkholderiaceae(11%); and the fungal familyMycosphaerella(45%) were most abundant. All compartments were colonized by high number of bacteria and fungi (107\uffe2\uff80\uff931010marker gene copies per g fresh weight), and were characterized by high microbial diversity (6049 and 1501 ASVs); both were higher for the belowground samples\uffc2\uffa0than in the phyllosphere. Compartment type was the main driver of microbial diversity, structure, and abundance (bacterial: 45%; fungal: 61%) when compared to the cultivar (1.6%; 2.2%). Microbiome assembly was strongly divided for belowground habitats\uffc2\uffa0and the phyllosphere; only a low proportion of the microbiome was transferred from soil via the rhizosphere to the phyllosphere. During fruit development, we observed the highest rates of microbial transfer from leaves\uffc2\uffa0and flowers to ripe fruits, where most of the bacteria occured inside the pulp. In postharvest fruits, microbial diversity decreased while the overall abundance increased. Developing postharvest decay caused byBotrytis cinereadecreased the\uffc2\uffa0diversity as well, and induced a reduction of potentially beneficial taxa.</p>Conclusion<p>Our findings provide insights into microbiome assembly in strawberry plants and highlight the importance of microbe\uffc2\uffa0transfer during fruit development and storage with potential implications for food health and safety.</p", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Fruit pathogens", "ddc:540", "15. Life on land", "Microbiology", "Microbiome assembly", "Bacterial communities", "QR1-502", "Fungal communities", "Environmental sciences", "03 medical and health sciences", "Fragaria\u2009\u00d7\u2009ananassa", "GE1-350", "ddc:570", "Institut f\u00fcr Biochemie und Biologie", "Amplicon sequencing", "Research Article"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1186/s40793-022-00415-3.pdf"}, {"href": "https://doi.org/PMC9052558"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC9052558", "name": "item", "description": "PMC9052558", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC9052558"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-28T00:00:00Z"}}, {"id": "b8e9b1f6-a138-418a-88ea-18a5399bdc80", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[13.46, 53.29], [13.46, 53.43], [13.88, 53.43], [13.88, 53.29], [13.46, 53.29]]]}, "properties": {"themes": [{"concepts": [{"id": "farming"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "Soil"}, {"id": "Fusarium"}, {"id": "winter wheat"}, {"id": "Alternaria"}, {"id": "grass weeds"}, {"id": "Poaceae"}, {"id": "kettle holes"}, {"id": "ponds"}, {"id": "glacial lakes"}, {"id": "pathogenic fungi"}, {"id": "pathogens"}, {"id": "seasons"}, {"id": "agricultural sciences"}, {"id": "environmental sciences"}, {"id": "plant sciences"}], "scheme": "AGROVOC Multilingual agricultural thesaurus"}, {"concepts": [{"id": "Boden"}, {"id": "Lebensr\u00e4ume und Biotope"}, {"id": "Verteilung der Arten"}, {"id": "Bodenbedeckung"}, {"id": "Wissenschaftliche Forschung"}, {"id": "Landwirtschaft"}, {"id": "Ackerland"}], "scheme": "GEMET - Concepts, version 2.4"}, {"concepts": [{"id": "opendata"}], "scheme": "Free Keywords"}], "rights": "Restrictions applied to assure the protection of privacy or intellectual property, and any special restrictions or limitations or warnings on using the resource or metadata. Reports, articles, papers, scientific and non - scientific works of any form, including tables, maps, or any other kind of output, in printed or electronic form, based in whole or in part on the data supplied, must contain an acknowledgement of the form: \"Data reused from the BonaRes Data Centre www.bonares.de. This data were created as part of the ZALF Datenerfassung's research activities.\" Although every care has been taken in preparing and testing the data, the ZALF Datenerfassung and the BonaRes Data Centre cannot guarantee that the data are correct; neither does the ZALF Datenerfassung and the BonaRes Data Centre accept any liability whatsoever for any error, missing data or omission in the data, or for any loss or damage arising from its use. The ZALF Datenerfassung and BonaRes Data Centre will not be responsible for any direct or indirect use which might be made of the data.", "updated": "2023-08-16", "type": "Dataset", "created": "2023-04-02", "language": "eng", "title": "Fusarium abundance and diversity and Alternaria abundance on arable weeds at the edges of kettle holes in the AgroScapeLab Quillow in autumn and winter 2018, 2019 and 2020", "description": "Fields with winter wheat (preceding crop: maize) were selected to quantify the Fusarium and Alternaria infection in September, October, November 2018  as well as in October, November 2019 and January 2020 at 9 different kettle holes in the AgroScapeLab Quillow each season. At each kettle hole, 3 different arable weeds (the most frequent ones) were selected and sampled for further analyses. Total fungi, fungi of the genus Fusarium and Alternaria and the Fusarium species composition were determined by culture-dependent methods (numeration of colony forming units) from 10 weed pieces from each plant sample. 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Workgroup Research Data Management", "roles": ["publisher"], "phones": [{"value": "+49 33432 82 300"}], "emails": [{"value": "dataservice@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Strasse 84"], "city": "M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": "15374", "country": "Germany"}], "links": [{"href": {"url": null, "protocol": null, "protocol_url": "", "name": "https://ror.org/01ygyzs83", "name_url": "", "description": "ROR", "description_url": "", "applicationprofile": null, "applicationprofile_url": "", "function": null}}]}, {"name": "Grit von der Waydbrink", "organization": "ZALF", "position": null, "roles": ["dataCurator"], "phones": [{"value": null}], "emails": [{"value": "grit.waydbrink@zalf.de"}], "addresses": [{"deliveryPoint": ["Eberswalder Str.85"], "city": "M\u00fcncheberg", "administrativeArea": "Brandenburg", "postalCode": "15374", "country": "Germany"}], "links": [{"href": null}]}, {"organization": "ZALF", "roles": ["contributor"]}]}, "links": [{"href": "https://maps.bonares.de/mapapps/resources/apps/bonares/index.html?lang=en&mid=b8e9b1f6-a138-418a-88ea-18a5399bdc80", "rel": "information"}, {"rel": "self", "type": "application/geo+json", "title": "b8e9b1f6-a138-418a-88ea-18a5399bdc80", "name": "item", "description": "b8e9b1f6-a138-418a-88ea-18a5399bdc80", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/b8e9b1f6-a138-418a-88ea-18a5399bdc80"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"interval": ["2018-09-01T00:00:00Z", "2020-03-31T00:00:00Z"]}}, {"id": "616f4686-078a-4d60-9fd5-3629389010a1", "type": "Feature", "geometry": {"type": "Polygon", "coordinates": [[[13.46, 53.29], [13.46, 53.43], [13.88, 53.43], [13.88, 53.29], [13.46, 53.29]]]}, "properties": {"themes": [{"concepts": [{"id": "farming"}], "scheme": "https://standards.iso.org/iso/19139/resources/gmxCodelists.xml#MD_TopicCategoryCode"}, {"concepts": [{"id": "Soil"}, {"id": "Fusarium"}, {"id": "Fusarium culmorum"}, {"id": "Fusarium equiseti"}, {"id": "Fusarium oxysporum"}, {"id": "Fusarium sporotrichioides"}, {"id": "Gibberella zeae"}, {"id": "Fusarium solani"}, {"id": "Alternaria"}, {"id": "winter wheat"}, {"id": "weeds"}, {"id": "mycotoxins"}, {"id": "trichothecenes"}, {"id": "zearalenone"}, {"id": "quantitative polymerase chain reaction"}, {"id": "kettle holes"}, {"id": "glacial lakes"}, {"id": "ponds"}, {"id": "pathogenic fungi"}, {"id": "pathogens"}, {"id": "agricultural sciences"}, {"id": "agricultural landscape"}], "scheme": "AGROVOC Multilingual agricultural thesaurus"}, {"concepts": [{"id": "opendata"}], "scheme": "Individual"}, {"concepts": [{"id": "Boden"}, {"id": "Lebensr\u00e4ume und Biotope"}, {"id": "Verteilung der Arten"}, {"id": "Landwirtschaft"}, {"id": "Wissenschaft"}, {"id": "Bodennutzung"}], "scheme": "GEMET - 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Reports, articles, papers, scientific and non - scientific works of any form, including tables, maps, or any other kind of output, in printed or electronic form, based in whole or in part on the data supplied, must contain an acknowledgement of the form: \"Data reused from the BonaRes Data Centre www.bonares.de. This data were created as part of the ZALF Datenerfassung's research activities.\" Although every care has been taken in preparing and testing the data, the ZALF Datenerfassung and the BonaRes Data Centre cannot guarantee that the data are correct; neither does the ZALF Datenerfassung and the BonaRes Data Centre accept any liability whatsoever for any error, missing data or omission in the data, or for any loss or damage arising from its use. The ZALF Datenerfassung and BonaRes Data Centre will not be responsible for any direct or indirect use which might be made of the data.", "updated": "2023-11-14", "type": "Dataset", "created": "2023-07-20", "language": "eng", "title": "Fusarium abundance and diversity and Alternaria abundance on weeds and wheat ears in transitions zones between kettle hole edge and field and field edge and field.", "description": "Fields with maize before winter wheat were selected to quantify the Fusarium and Alternaria infection on arable weeds at the edges of 10 different kettle holes and at 6 different field edges in July of 2019 and 2020. At each field margin and kettle hole, 3 different arable weeds (the most frequent ones) were selected and sampled for further analyses. Fusarium species were determined by culture-dependent methods from 10 weed pieces from each plant sample. Also, DNA was extracted from the dried and ground weed samples, and the abundance of Fusarium and Alternaria was determined by qPCR. Furthermore, the Fusarium and Alternaria infection on wheat ears in the transition zones between kettle hole edge and field and field edge and field in July 2019 and 2020 were determined. 10 different kettle holes and 6 different field edges each year were selected and transects were build up into the field (up to 50m). Fusarium and Alternaria abundance in the transition zones were analyzed by qPCR with extracted DNA out of dried and ground samples. Furthermore, Fusarium species diversity was analyzed by culture-dependent methods using kernels of the wheat ears collected at each sampling point.This table contains the index of all tables forming this data collection.\n\nRelated datasets are listed in the metadata element 'Related Identifier'.\nDataset version 1.0", "formats": [{"name": "CSV"}], "keywords": ["Soil", "Fusarium", "Fusarium culmorum", "Fusarium equiseti", "Fusarium oxysporum", "Fusarium sporotrichioides", "Gibberella zeae", "Fusarium solani", "Alternaria", "winter wheat", "weeds", "mycotoxins", "trichothecenes", "zearalenone", "quantitative polymerase chain reaction", "kettle holes", "glacial lakes", "ponds", "pathogenic fungi", "pathogens", "agricultural sciences", "agricultural landscape", "opendata", "Boden", "Lebensr\u00e4ume und Biotope", "Verteilung der Arten", "Landwirtschaft", "Wissenschaft", "Bodennutzung", "Germany", "Brandenburg", "Uckermark", "Quillow"], "contacts": [{"name": "Leibniz Centre for 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