Legume roots can be symbiotically colonized by arbuscular mycorrhizal (AM) fungi and nitrogen-fixing bacteria. In Lotus japonicus, the latter occurs intracellularly by the cognate rhizobial partner Mesorhizobium loti or intercellularly with the Agrobacterium pusense strain IRBG74. Although these symbiotic programs show distinctive cellular and transcriptome signatures, some molecular components are shared. In this study, we demonstrate that 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 1 (DAHPS1), the first enzyme in the biosynthetic pathway of aromatic amino acids (AAAs), plays a critical role in root hair development and for AM and rhizobial symbioses in Lotus. Two homozygous DAHPS1 mutants (dahps1-1 and dahps1-2) showed drastic alterations in root hair morphology, associated with alterations in cell wall dynamics and a progressive disruption of the actin cytoskeleton. The altered root hair structure was prevented by pharmacological and genetic complementation. dahps1-1 and dahps1-2 showed significant reductions in rhizobial infection (intracellular and intercellular) and nodule organogenesis and a delay in AM colonization. RNAseq analysis of dahps1-2 roots suggested that these phenotypes are associated with downregulation of several cell wall\uffe2\uff80\uff93related genes, and with an attenuated signaling response. Interestingly, the dahps1 mutants showed no detectable pleiotropic effects, suggesting a more selective recruitment of this gene in certain biological processes. This work provides robust evidence linking AAA metabolism to root hair development and successful symbiotic associations.Boreal forest regions, including East Siberia, have experienced elevated fire activity in recent years, leading to record\uffe2\uff80\uff90breaking greenhouse gas emissions and severe air pollution. However, our understanding of the factors that eventually halt fire spread and thus limit fire growth remains incomplete, hindering our ability to model their dynamics and predict their impacts. We investigated the locations and timing of 2.2 million fire stops\uffe2\uff80\uff94defined as 300\uffe2\uff80\uff89m unburned pixels along fire perimeters\uffe2\uff80\uff94across the vast East Siberian taiga. Fire stops were retrieved from remote sensing data covering over 27,000 individual fires that collectively burned 80 Mha between 2012 and 2022. Several geospatial datasets, including hourly fire weather data and landscape variables, were used to identify the factors contributing to individual fire stops. Our analysis attributed 87% of all fire stops to a statistically significant (p\uffe2\uff80\uff89<\uffe2\uff80\uff890.01) change in one or more of these drivers, with fire\uffe2\uff80\uff90weather drivers limiting fire growth over time and landscape drivers constraining it across space. We found clear regional and temporal variations in the importance of these drivers. For instance, landscape drivers\uffe2\uff80\uff94such as less flammable land cover and the presence of roads\uffe2\uff80\uff94were key constraints on fire growth in southeastern Siberia, where the landscape is more populated and fragmented. In contrast, fire weather was the primary constraint on fire growth in the remote northern taiga. Additionally, in central Yakutia, a major fire hotspot in recent years, fuel limitations from previous fires increasingly restricted fire spread. The methodology we present is adaptable to other biomes and can be applied globally, providing a framework for future attribution studies on global fire growth limitations. In northeast Siberia, we found that with increasing droughts and heatwaves, remote northern fires could potentially grow even larger in the future, with major implications for the global carbon cycle and climate.Insect herbivores play important roles in shaping many ecosystem processes, but how climate change will alter the effects of insect herbivory are poorly understood. To address this knowledge gap, we quantified for the first time how insect frass and cadavers affected leaf litter decomposition rates and nutrient release along a highly constrained 4.3\uffc2\uffb0C mean annual temperature (MAT) gradient in a Hawaiian montane tropical wet forest. We constructed litterbags of standardized locally sourced leaf litter, with some amended with insect frass + cadavers to produce treatments designed to simulate ambient (Control\uffc2\uffa0=\uffc2\uffa0no amendment), moderate (Amended\uffe2\uff80\uff90Low\uffc2\uffa0=\uffc2\uffa02\uffe2\uff80\uff89\uffc3\uff97\uffe2\uff80\uff89Control level), or severe (Amended\uffe2\uff80\uff90High\uffc2\uffa0=\uffc2\uffa011\uffe2\uff80\uff89\uffc3\uff97\uffe2\uff80\uff89Control level) insect outbreak events. Multiple sets of these litterbags were deployed across the MAT gradient, with individual litterbags collected periodically over one\uffe2\uff80\uff89year to assess how rising MAT altered the effects of insect deposits on litter decomposition rates and nitrogen (N) release. Increased MAT and insect inputs additively increased litter decomposition rates and N immobilization rates, with effects being stronger for Amended\uffe2\uff80\uff90High litterbags. However, the apparent temperature sensitivity (Q10) of litter decomposition was not clearly affected by amendments. The effects of adding insect deposits in this study operated differently than the slower litter decomposition and greater N mobilization rates often observed in experiments which use chemical fertilizers (e.g., urea, ammonium nitrate). Further research is required to understand mechanistic differences between amendment types. Potential increases in outbreak\uffe2\uff80\uff90related herbivore deposits coupled with climate warming will accelerate litter decomposition and nutrient cycling rates with short\uffe2\uff80\uff90term consequences for nutrient cycling and carbon storage in tropical montane wet forests.Climate and land use models predict that tropical deforestation and conversion to cropland will produce a large flux of soil carbon (C) to the atmosphere from accelerated decomposition of soil organic matter (SOM). However, the C flux from the deep tropical soils on which most intensive crop agriculture is now expanding remains poorly constrained. To quantify the effect of intensive agriculture on tropical soil C, we compared C stocks, radiocarbon, and stable C isotopes to 2\uffc2\uffa0m depth from forests and soybean cropland created from former pasture in Mato Grosso, Brazil. We hypothesized that soil disturbance, higher soil temperatures (+2\uffc2\uffb0C), and lower OM inputs from soybeans would increase soil C turnover and deplete C stocks relative to nearby forest soils. However, we found reduced C concentrations and stocks only in surface soils (0\uffe2\uff80\uff9310\uffc2\uffa0cm) of soybean cropland compared with forests, and these differences could be explained by soil mixing during plowing. The amount and \uffce\uff9414C of respired CO2 to 50\uffc2\uffa0cm depth were significantly lower from soybean soils, yet CO2 production at 2\uffc2\uffa0m deep was low in both forest and soybean soils. Mean surface soil \uffce\uffb413C decreased by 0.5\uffe2\uff80\uffb0 between 2009 and 2013 in soybean cropland, suggesting low OM inputs from soybeans. Together these findings suggest the following: (1) soil C is relatively resistant to changes in land use and (2) conversion to cropland caused a small, measurable reduction in the fast\uffe2\uff80\uff90cycling C pool through reduced OM inputs, mobilization of older C from soil mixing, and/or destabilization of SOM in surface soils.
", "keywords": ["tropical forest", "2. Zero hunger", "Life on Land", "land use", "Agriculture", "04 agricultural and veterinary sciences", "15. Life on land", "Soil carbon", "Geophysics", "Tropical forest", "Isotopes", "13. Climate action", "Land use", "Earth Sciences", "0401 agriculture", " forestry", " and fisheries", "soil carbon", "Brazil", "isotopes", "Research Articles", "agriculture"]}, "links": [{"href": "https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1002/2017JG004269"}, {"href": "https://escholarship.org/content/qt4jm295dz/qt4jm295dz.pdf"}, {"href": "https://doi.org/10.1002/2017JG004269"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Geophysical%20Research%3A%20Biogeosciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/2017JG004269", "name": "item", "description": "10.1002/2017JG004269", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/2017JG004269"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-01-01T00:00:00Z"}}, {"id": "10.1002/ece3.6803", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:14Z", "type": "Journal Article", "created": "2020-09-22", "title": "Background insect herbivory increases with local elevation but makes minor contribution to element cycling along natural gradients in the Subarctic", "description": "AbstractHerbivores can exert major controls over biogeochemical cycling. As invertebrates are highly sensitive to temperature shifts (ectothermal), the abundances of insects in high\uffe2\uff80\uff90latitude systems, where climate warming is rapid, is expected to increase. In subarctic mountain birch forests, research has focussed on geometrid moth outbreaks, while the contribution of background insect herbivory (BIH) to elemental cycling is poorly constrained. In northern Sweden, we estimated BIH along 9 elevational gradients distributed across a gradient in regional elevation, temperature, and precipitation to allow evaluation of consistency in local versus regional variation. We converted foliar loss via BIH to fluxes of C, nitrogen (N), and phosphorus (P) from the birch canopy to the soil to compare with other relevant soil inputs of the same elements and assessed different abiotic and biotic drivers of the observed variability. We found that leaf area loss due to BIH was ~1.6% on average. This is comparable to estimates from tundra, but considerably lower than ecosystems at lower latitudes. The C, N, and P fluxes from canopy to soil associated with BIH were 1\uffe2\uff80\uff932 orders of magnitude lower than the soil input from senesced litter and external nutrient sources such as biological N fixation, atmospheric deposition of N, and P weathering estimated from the literature. Despite the minor contribution to overall elemental cycling in subarctic birch forests, the higher quality and earlier timing of the input of herbivore deposits to soils compared to senesced litter may make this contribution disproportionally important for various ecosystem functions. BIH increased significantly with leaf N content as well as local elevation along each transect, yet showed no significant relationship with temperature or humidity, nor the commonly used temperature proxy, absolute elevation. The lack of consistency between the local and regional elevational trends calls for caution when using elevation gradients as climate proxies.Timber production is one of the most important ecosystem services provided by hardwood forests, but clear\uffe2\uff80\uff90cutting causes severe soil disturbance. There is a current need to develop alternative forest management practices to clear\uffe2\uff80\uff90cutting in order to simultaneously promote timber production, preserve biodiversity and enhance forest health and economic value. Here, we experimentally manipulated a Quercus pubescens forest to evaluate the effects of a thinning gradient (i.e., partial tree removal) ranging from 25% to 75% basal area reduction and a logging residue retention (i.e., slash management) on ground\uffe2\uff80\uff90dwelling spider abundance and species richness. These two alternative management practices were compared with clear\uffe2\uff80\uff90cutting (100% basal area reduction) and logging residue exportation methods. In each treatment, we recorded soil temperature and moisture, understorey vegetation cover, richness and functional traits and mesologic factors describing habitat characteristics. We found clear\uffe2\uff80\uff90cutting had a stronger effect than thinning on the microclimatic conditions, i.e., higher temperatures, drier soils and reduced forest buffering capacity. The 25% thinning intensity was sufficient to drastically reduce both spider abundance and richness, but we did not find a more significant reduction when more intensive cutting was applied. This result suggests a threshold effect in the response of spiders to cutting. Significant changes in the functional diversity of understory plant communities in response to basal area were observed, along with strong effects on spider communities. Unexpectedly, slash retention appeared to have little or no effect on the forest microclimate, spider abundance and species richness. This work is intended for forest managers and policymakers and aims to contribute to the development of relevant practices that address current environmental and economic challenges. While our findings provide valuable insights into understudied forest management practices in Mediterranean climates, additional research is required, particularly through multi\uffe2\uff80\uff90seasonal and long\uffe2\uff80\uff90term spider sampling.Soil microbial carbon use efficiency (CUE), defined as the ratio of organic C allocated to growth over organic C taken up, strongly affects soil carbon (C) cycling. Despite the importance of the microbial CUE for the terrestrial C cycle, very little is known about how it is affected by nutrient availability. Therefore, we studied microbial CUE and microbial biomass turnover time in soils of a long-term fertilization experiment in a temperate grassland comprising five treatments (control, PK, NK, NP, NPK). Microbial CUE and the turnover of microbial biomass were determined using a novel substrate-independent method based on incorporation of 18O from labeled water into microbial DNA. Microbial respiration was 28-37% smaller in all three N treatments (NK, NP, and NPK) compared to the control, whereas the PK treatment did not affect microbial respiration. N-fertilization decreased microbial C uptake, while the microbial growth rate was not affected. Microbial CUE ranged between 0.31 and 0.45, and was 1.3- to 1.4-fold higher in the N-fertilized soils than in the control. The turnover time ranged between 80 and 113 days and was not significantly affected by fertilization. Net primary production (NPP) and the abundance of legumes differed strongly across the treatments, and the fungal:bacterial ratio was very low in all treatments. Structural equation modeling revealed that microbial CUE was exclusively controlled by N fertilization and that neither the abundance of legumes (as a proxy for the quality of the organic matter inputs) nor NPP (as a proxy for C inputs) had an effect on microbial CUE. Our results show that N fertilization did not only decrease microbial respiration, but also microbial C uptake, indicating that less C was intracellularly processed in the N fertilized soils. The reason for reduced C uptake and increased CUE in the N-fertilization treatments is likely an inhibition of oxidative enzymes involved in the degradation of aromatic compounds by N in combination with a reduced energy requirement for microbial N acquisition in the fertilized soils. In conclusion, the study shows that N availability can control soil C cycling by affecting microbial CUE, while plant community-mediated changes in organic matter inputs and P and K availability played no important role for C partitioning of the microbial community in this temperate grassland.
", "keywords": ["FUNGAL", "2. Zero hunger", "106022 Mikrobiologie", "Nitrogen addition", "BACTERIAL", "NITROGEN DEPOSITION", "GROWTH EFFICIENCY", "FOREST FLOOR", "Nutrients", "04 agricultural and veterinary sciences", "15. Life on land", "Stoichiometry", "ORGANIC-MATTER", "RESPIRATION", "106026 \u00d6kosystemforschung", "13. Climate action", "Nutrient limitation", "Microbial growth yield", "106022 Microbiology", "0401 agriculture", " forestry", " and fisheries", "Mean residence time", "STOICHIOMETRIC CONTROLS", "ENZYME-ACTIVITY", "106026 Ecosystem research", "COMMUNITY STRUCTURE"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2016.03.008"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2016.03.008", "name": "item", "description": "10.1016/j.soilbio.2016.03.008", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2016.03.008"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-06-01T00:00:00Z"}}, {"id": "10.1186/s40793-023-00479-9", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:17:42Z", "type": "Journal Article", "created": "2023-03-30", "title": "Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis", "description": "Abstract BackgroundFor a sustainable production of food, research on agricultural soil microbial communities is inevitable. Due to its immense complexity, soil is still some kind of black box. Soil study designs for identifying microbiome members of relevance have various scopes and focus on particular environmental factors. To identify common features of soil microbiomes, data from multiple studies should be compiled and processed. Taxonomic compositions and functional capabilities of microbial communities associated with soils and plants have been identified and characterized in the past few decades. From a fertile Loess\uffe2\uff80\uff93Chernozem-type soil located in Germany, metagenomically assembled genomes (MAGs) classified as members of the phylum Thaumarchaeota/Thermoproteota were obtained. These possibly represent keystone agricultural soil community members encoding functions of relevance for soil fertility and plant health. Their importance for the analyzed microbiomes is corroborated by the fact that they were predicted to contribute to the cycling of nitrogen, feature the genetic potential to fix carbon dioxide and possess genes with predicted functions in plant-growth-promotion (PGP). To expand the knowledge on soil community members belonging to the phylum Thaumarchaeota, we conducted a meta-analysis integrating primary studies on European agricultural soil microbiomes.
ResultsTaxonomic classification of the selected soil metagenomes revealed the shared agricultural soil core microbiome of European soils from 19 locations. Metadata reporting was heterogeneous between the different studies. According to the available metadata, we separated the data into 68 treatments. The phylum Thaumarchaeota is part of the core microbiome and represents a major constituent of the archaeal subcommunities in all European agricultural soils. At a higher taxonomic resolution, 2074 genera constituted the core microbiome. We observed that viral genera strongly contribute to variation in taxonomic profiles. By binning of metagenomically assembled contigs, Thaumarchaeota MAGs could be recovered from several European soil metagenomes. Notably, many of them were classified as members of the family Nitrososphaeraceae, highlighting the importance of this family for agricultural soils. The specific Loess-Chernozem Thaumarchaeota MAGs were most abundant in their original soil, but also seem to be of importance in other agricultural soil microbial communities. Metabolic reconstruction of Switzerland_1_MAG_2 revealed its genetic potential i.a. regarding carbon dioxide (CO$$_2$$ 2 ) fixation, ammonia oxidation, exopolysaccharide production and a beneficial effect on plant growth. Similar genetic features were also present in other reconstructed MAGs. Three Nitrososphaeraceae MAGs are all most likely members of a so far unknown genus.
ConclusionsOn a broad view, European agricultural soil microbiomes are similarly structured. Differences in community structure were observable, although analysis was complicated by heterogeneity in metadata recording. Our study highlights the need for standardized metadata reporting and the benefits of networking open data. Future soil sequencing studies should also consider high sequencing depths in order to enable reconstruction of genome bins. Intriguingly, the family Nitrososphaeraceae commonly seems to be of importance in agricultural microbiomes.
", "keywords": ["2. Zero hunger", "570", "Soil microbial diversity", "Metagenomically assembled genomes", "Research", "European soil", "Open metagenome data analysis", "15. Life on land", "Microbiology", "Thaumarchaeota", "QR1-502", "Environmental sciences", "Agricultural microbiome", "Soil health", "GE1-350"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1186/s40793-023-00479-9.pdf"}, {"href": "https://doi.org/10.1186/s40793-023-00479-9"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40793-023-00479-9", "name": "item", "description": "10.1186/s40793-023-00479-9", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40793-023-00479-9"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-03-30T00:00:00Z"}}, {"id": "10.1016/j.eja.2020.126009", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:15:28Z", "type": "Journal Article", "created": "2020-02-14", "title": "A framework to type crop management strategies within a production situation to improve the comprehension of weed communities", "description": "Abstract Farmers facing the same production situation may have different farming objectives and thus farming practices. However, the latter are rarely precisely described since studies often use a unique indicator of soil use intensity, showing a weak explanatory value of biotic pressures. Our aim was to develop a framework to identify crop management strategies based on (i) 14 indicators of farming practices collected in 203 fields from 2004 to 2016 through interviews with the 23 farmers managing the fields, and (ii) a discussion with the farmers to assess to what extent they are valid. Then, we assessed how much these strategies helped improving our understanding of 412 weed communities surveyed in their fields. Indicators of farming intensity (e.g. treatment frequency index) was converted into ratios by dividing with the mean value of all the fields cultivated with the same crop in the same year. We identified eight crop management strategies with cluster analysis within a 950-ha area exposed to the same production situation. They differed, in decreasing order of importance, by the diversity of crops, tillage intensity, pesticide and fertiliser uses. The interviews of the farmers validated their assignment to each strategy. The interviews revealed the reasons why farmers implement a single or various strategies in their fields (seven farmers practiced two or three strategies because of differences in soil types or history of fields). The outputs of the classification gave them additional information on how their farming system differed from those of their neighbours. Using crop management strategies improved the quality of the statistical models predicting weed richness, cumulated weed richness over the 2008\u20132013 period, weed abundance and the frequency of weeding failure. This framework is useful to identify crop management strategies and to share information with farmers in order to be used to redesign cropping systems toward a more environmentally friendly agriculture.", "keywords": ["[SDE] Environmental Sciences", "2. Zero hunger", "0106 biological sciences", "mouldboard ploughing", "04 agricultural and veterinary sciences", "treatment frequency index", "15. Life on land", "01 natural sciences", "630", "nitrogen", "[SDE]Environmental Sciences", "0401 agriculture", " forestry", " and fisheries", "participatory research", "tillage intensity", "weeding failure"]}, "links": [{"href": "https://doi.org/10.1016/j.eja.2020.126009"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/European%20Journal%20of%20Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.eja.2020.126009", "name": "item", "description": "10.1016/j.eja.2020.126009", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.eja.2020.126009"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2017.04.062", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:15:32Z", "type": "Journal Article", "created": "2017-04-29", "title": "Ecological impacts of atmospheric pollution and interactions with climate change in terrestrial ecosystems of the Mediterranean Basin: Current research and future directions", "description": "Mediterranean Basin ecosystems, their unique biodiversity, and the key services they provide are currently at risk due to air pollution and climate change, yet only a limited number of isolated and geographically-restricted studies have addressed this topic, often with contrasting results. Particularities of air pollution in this region include high O3 levels due to high air temperatures and solar radiation, the stability of air masses, and dominance of dry over wet nitrogen deposition. Moreover, the unique abiotic and biotic factors (e.g., climate, vegetation type, relevance of Saharan dust inputs) modulating the response of Mediterranean ecosystems at various spatiotemporal scales make it difficult to understand, and thus predict, the consequences of human activities that cause air pollution in the Mediterranean Basin. Therefore, there is an urgent need to implement coordinated research and experimental platforms along with wider environmental monitoring networks in the region. In particular, a robust deposition monitoring network in conjunction with modelling estimates is crucial, possibly including a set of common biomonitors (ideally cryptogams, an important component of the Mediterranean vegetation), to help refine pollutant deposition maps. Additionally, increased attention must be paid to functional diversity measures in future air pollution and climate change studies to establish the necessary link between biodiversity and the provision of ecosystem services in Mediterranean ecosystems. Through a coordinated effort, the Mediterranean scientific community can fill the above-mentioned gaps and reach a greater understanding of the mechanisms underlying the combined effects of air pollution and climate change in the Mediterranean Basin.", "keywords": ["air pollution; climate change; coordinated research networks; environmental monitoring; functional diversity; Mediterranean ecosystems; toxicology; pollution", "570", "Coordinated research networks", "550", "Nitrogen", "Climate", "Climate Change", "Air pollution", "Functional diversity", "01 natural sciences", "Air Pollution", "11. Sustainability", "Climate change", "Humans", "14. Life underwater", "Ecosystem", "0105 earth and related environmental sciences", "2. Zero hunger", "Air Pollutants", "Atmosphere", "Research", "Aquatic Ecology", "Environmental monitoring", "Biodiversity", "15. Life on land", "Medio Ambiente", "13. Climate action", "Air pollution; Climate change; Coordinated research networks; Environmental monitoring; Functional diversity; Mediterranean ecosystems; Air Pollutants; Air Pollution; Atmosphere; Biodiversity; Climate; Humans; Nitrogen; Research; Climate Change; Ecosystem; Environmental Monitoring", "Mediterranean ecosystems", "Air pollution; Climate change; Coordinated research networks; Environmental monitoring; Functional diversity; Mediterranean ecosystems; Toxicology; Pollution; Health", " Toxicology and Mutagenesis", "Air pollution; Climate change; Coordinated research networks; Environmental monitoring; Functional diversity; Mediterranean ecosystems; Air Pollutants; Air Pollution; Atmosphere; Biodiversity; Climate; Humans; Nitrogen; Research; Climate Change; Ecosystem; Environmental Monitoring; Toxicology; Pollution; Health", " Toxicology and Mutagenesis", "Environmental Monitoring"]}, "links": [{"href": "https://eprints.lancs.ac.uk/id/eprint/86451/1/CAPERMed06042017_F.pdf"}, {"href": "https://doi.org/10.1016/j.envpol.2017.04.062"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2017.04.062", "name": "item", "description": "10.1016/j.envpol.2017.04.062", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2017.04.062"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-08-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2010.02.020", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:16:05Z", "type": "Journal Article", "created": "2010-03-12", "title": "Carbon Dioxide Emissions Of Soils Under Pure And Mixed Stands Of Beech And Spruce, Affected By Decomposing Foliage Litter Mixtures", "description": "Soil respiration is the largest terrestrial source of CO2 to the atmosphere. In forests, roughly half of the soil respiration is autotrophic (mainly root respiration) while the remainder is heterotrophic, originating from decomposition of soil organic matter. Decomposition is an important process for cycling of nutrients in forest ecosystems. Hence, tree species induced changes may have a great impact on atmospheric CO2 concentrations. Since studies on the combined effects of beech\u2013spruce mixtures are very rare, we firstly measured CO2 emission rates in three adjacent stands of pure spruce (Picea abies), mixed spruce\u2013beech and pure beech (Fagus sylvatica) on three base-rich sites (Flysch) and three base-poor sites (Molasse; yielding a total of 18 stands) during two summer periods using the closed chamber method. CO2 emissions were higher on the well-aerated sandy soils on Molasse than on the clayey soils on Flysch, characterized by frequent water logging. Mean CO2 effluxes increased from spruce (41) over the mixed (55) to the beech (59) stands on Molasse, while tree species effects were lower on Flysch (30\u201335, mixed > beech = spruce; all data in mg CO2\u2013C m\u22122 h\u22121). Secondly, we studied decomposition after fourfold litter manipulations at the 6 mixed species stands: the Oi \u2013 and Oe horizons were removed and replaced by additions of beech \u2013, spruce \u2013 and mixed litter of the adjacent pure stands of known chemical quality and one zero addition (blank) in open rings (20 cm inner diameter), which were covered with meshes to exclude fresh litter fall. Mass loss within two years amounted to 61\u201368% on Flysch and 36\u201344% on Molasse, indicating non-additive mixed species effects (mixed litter showed highest mass loss). However, base cation release showed a linear response, increasing from the spruce \u2013 over the mixed \u2013 to the beech litter. The differences in N release (immobilization) resulted in a characteristic converging trend in C/N ratios for all litter compositions on both bedrocks during decomposition. In the summers 2006 and 2007 we measured CO2 efflux from these manipulated areas (a closed chamber fits exactly over such a ring) as field indicator of the microbial activity. Net fluxes (subtracting the so-called blank values) are considered an indicator of litter induced changes only and increased on both bedrocks from the spruce \u2013 over the mixed \u2013 to the beech litter. According to these measurements, decomposing litter contributed between 22\u201332% (Flysch) and 11\u201328% (Molasse) to total soil respiration, strengthening its role within the global carbon cycle.", "keywords": ["DYNAMICS", "0106 biological sciences", "FLUXES", "Fagus sylvatica", "NUTRIENT RELEASE", "BROADLEAF", "Nutrient cycling", "01 natural sciences", "Mixed species effects", "507015 Regionalforschung", "FORESTS", "FAGUS-SYLVATICA", "CO(2) efflux", "SDG 15 \u2013 Leben an Land", "SDG 15 - Life on Land", "Picea abies", "Litter decomposition", "NORWAY SPRUCE", "04 agricultural and veterinary sciences", "15. Life on land", "PICEA-ABIES", "RESPIRATION", "13. Climate action", "507015 Regional research", "0401 agriculture", " forestry", " and fisheries", "LEAF-LITTER"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2010.02.020"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2010.02.020", "name": "item", "description": "10.1016/j.soilbio.2010.02.020", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2010.02.020"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-06-01T00:00:00Z"}}, {"id": "PMC11468586", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:23:33Z", "type": "Journal Article", "created": "2021-09-08", "title": "Wafer\u2010Scale Functional Metasurfaces for Mid\u2010Infrared Photonics and Biosensing", "description": "AbstractMetasurfaces have emerged as a breakthrough platform for manipulating light at the nanoscale and enabling on\uffe2\uff80\uff90demand optical functionalities for next\uffe2\uff80\uff90generation biosensing, imaging, and light\uffe2\uff80\uff90generating photonic devices. However, translating this technology to practical applications requires low\uffe2\uff80\uff90cost and high\uffe2\uff80\uff90throughput fabrication methods. Due to the limited choice of materials with suitable optical properties, it is particularly challenging to produce metasurfaces for the technologically relevant mid\uffe2\uff80\uff90infrared spectral range. These constraints are overcome by realizing functional metasurfaces on almost completely transparent free\uffe2\uff80\uff90standing metal\uffe2\uff80\uff90oxide membranes. A versatile nanofabrication process is developed and implemented for highly efficient dielectric and plasmonic mid\uffe2\uff80\uff90infrared metasurfaces with wafer\uffe2\uff80\uff90scale and complementary metal\uffe2\uff80\uff93oxide\uffe2\uff80\uff93semiconductor (CMOS)\uffe2\uff80\uff90compatible manufacturing techniques. The advantages of this method are revealed by demonstrating highly uniform and functional metasurfaces, including high\uffe2\uff80\uff90Q structures enabling fine spectral selectivity, large\uffe2\uff80\uff90area metalenses\uffc2\uffa0with\uffc2\uffa0diffraction\uffe2\uff80\uff90limited focusing capabilities, and birefringent metasurfaces providing polarization control at record\uffe2\uff80\uff90high conversion efficiencies.\uffc2\uffa0 Aluminum plasmonic devices and their integration into microfluidics for real\uffe2\uff80\uff90time and label\uffe2\uff80\uff90free mid\uffe2\uff80\uff90infrared biosensing of proteins and lipid vesicles are further demonstrated. The versatility of this approach and its compatibility with mass\uffe2\uff80\uff90production processes bring infrared metasurfaces markedly closer to commercial applications, such as thermal imaging, spectroscopy, and biosensing.Measurements of nitrous oxide (N2O) emissions from agriculture are essential for understanding the complex soil\uffe2\uff80\uff93crop\uffe2\uff80\uff93climate processes, but there are practical and economic limits to the spatial and temporal extent over which measurements can be made. Therefore, N2O models have an important role to play. As models are comparatively cheap to run, they can be used to extrapolate field measurements to regional or national scales, to simulate emissions over long time periods, or to run scenarios to compare mitigation practices. Process\uffe2\uff80\uff90based models can also be used as an aid to understanding the underlying processes, as they can simulate feedbacks and interactions that can be difficult to distinguish in the field. However, when applying models, it is important to understand the conceptual process differences in models, how conceptual understanding changed over time in various models, and the model requirements and limitations to ensure that the model is well suited to the purpose of the investigation and the type of system being simulated. The aim of this paper is to give the reader a high\uffe2\uff80\uff90level overview of some of the important issues that should be considered when modeling. This includes conceptual understanding of widely used models, common modeling techniques such as calibration and validation, assessing model fit, sensitivity analysis, and uncertainty assessment. We also review examples of N2O modeling for different purposes and describe three commonly used process\uffe2\uff80\uff90based N2O models (APSIM, DayCent, and DNDC).
Changes in fire regime of boreal forests in response to climate warming are expected to impact postfire recovery. However, quantitative data on how managed forests sustain and recover from recent fire disturbance are limited.
Two years after a large wildfire in managed even\uffe2\uff80\uff90aged boreal forests in Sweden, we investigated how recovery of aboveground and belowground communities, that is, understory vegetation and soil microbial and faunal communities, responded to variation in the severity of soil (i.e., consumption of soil organic matter) and canopy fires (i.e., tree mortality).
While fire overall enhanced diversity of understory vegetation through colonization of fire adapted plant species, it reduced the abundance and diversity of soil biota. We observed contrasting effects of tree\uffe2\uff80\uff90 and soil\uffe2\uff80\uff90related fire severity on survival and recovery of understory vegetation and soil biological communities. Severe fires that killed overstory Pinus sylvestris promoted a successional stage dominated by the mosses Ceratodon purpureus and Polytrichum juniperinum, but reduced regeneration of tree seedlings and disfavored the ericaceous dwarf\uffe2\uff80\uff90shrub Vaccinium vitis\uffe2\uff80\uff90idaea and the grass Deschampsia flexuosa. Moreover, high tree mortality from fire reduced fungal biomass and changed fungal community composition, in particular that of ectomycorrhizal fungi, and reduced the fungivorous soil Oribatida. In contrast, soil\uffe2\uff80\uff90related fire severity had little impact on vegetation composition, fungal communities, and soil animals. Bacterial communities responded to both tree\uffe2\uff80\uff90 and soil\uffe2\uff80\uff90related fire severity.
Synthesis: Our results 2\uffe2\uff80\uff89years postfire suggest that a change in fire regime from a historically low\uffe2\uff80\uff90severity ground fire regime, with fires that mainly burns into the soil organic layer, to a stand\uffe2\uff80\uff90replacing fire regime with a high degree of tree mortality, as may be expected with climate change, is likely to impact the short\uffe2\uff80\uff90term recovery of stand structure and above\uffe2\uff80\uff90 and belowground species composition of even\uffe2\uff80\uff90aged P.\uffe2\uff80\uff89sylvestris boreal forests.
The land surface controls the partitioning of water and energy fluxes and therefore plays a crucial role in the climate system. The coupling between soil moisture and air temperature, in particular, has been shown to affect the severity and occurrence of temperature extremes and heat waves. Here we study soil moisture\uffe2\uff80\uff90temperature coupling in five land surface models, focusing on the terrestrial segment of the coupling in the warm season. All models are run off\uffe2\uff80\uff90line over a common period with identical atmospheric forcing data, in order to allow differences in the results to be attributed to the models' partitioning of energy and water fluxes. Coupling is calculated according to two semiempirical metrics, and results are compared to observational flux tower data. Results show that the locations of the global hot spots of soil moisture\uffe2\uff80\uff90temperature coupling are similar across all models and for both metrics. In agreement with previous studies, these areas are located in transitional climate regimes. The magnitude and local patterns of model coupling, however, can vary considerably. Model coupling fields are compared to tower data, bearing in mind the limitations in the geographical distribution of flux towers and the differences in representative area of models and in situ data. Nevertheless, model coupling correlates in space with the tower\uffe2\uff80\uff90based results (r = 0.5\uffe2\uff80\uff930.7), with the multimodel mean performing similarly to the best\uffe2\uff80\uff90performing model. Intermodel differences are also found in the evaporative fractions and may relate to errors in model parameterizations and ancillary data of soil and vegetation characteristics.", "keywords": ["ENVIRONMENT SIMULATOR JULES", "FLUXES", "0207 environmental engineering", "02 engineering and technology", "01 natural sciences", "CO2 EXCHANGE", "models", "WATER", "SCALE", "Research Articles", "0105 earth and related environmental sciences", "land surface", "CARBON-DIOXIDE EXCHANGE", "eartH2Observe", "temperature", "15. Life on land", "DECIDUOUS FOREST", "CLIMATE", "EVAPORATION", "VARIABILITY", "13. Climate action", "Earth and Environmental Sciences", "BALANCE", "land surface models", "SENSIBLE HEAT", "land-atmosphere interactions", "soil moisture"]}, "links": [{"href": "https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1002/2017JD027346"}, {"href": "https://doi.org/10.1002/2017JD027346"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Geophysical%20Research%3A%20Atmospheres", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/2017JD027346", "name": "item", "description": "10.1002/2017JD027346", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/2017JD027346"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-02-01T00:00:00Z"}}, {"id": "10.1002/2017jg004269", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:12Z", "type": "Journal Article", "created": "2017-12-18", "title": "Soil Carbon Dynamics in Soybean Cropland and Forests in Mato Grosso, Brazil", "description": "AbstractClimate and land use models predict that tropical deforestation and conversion to cropland will produce a large flux of soil carbon (C) to the atmosphere from accelerated decomposition of soil organic matter (SOM). However, the C flux from the deep tropical soils on which most intensive crop agriculture is now expanding remains poorly constrained. To quantify the effect of intensive agriculture on tropical soil C, we compared C stocks, radiocarbon, and stable C isotopes to 2\uffc2\uffa0m depth from forests and soybean cropland created from former pasture in Mato Grosso, Brazil. We hypothesized that soil disturbance, higher soil temperatures (+2\uffc2\uffb0C), and lower OM inputs from soybeans would increase soil C turnover and deplete C stocks relative to nearby forest soils. However, we found reduced C concentrations and stocks only in surface soils (0\uffe2\uff80\uff9310\uffc2\uffa0cm) of soybean cropland compared with forests, and these differences could be explained by soil mixing during plowing. The amount and \uffce\uff9414C of respired CO2 to 50\uffc2\uffa0cm depth were significantly lower from soybean soils, yet CO2 production at 2\uffc2\uffa0m deep was low in both forest and soybean soils. Mean surface soil \uffce\uffb413C decreased by 0.5\uffe2\uff80\uffb0 between 2009 and 2013 in soybean cropland, suggesting low OM inputs from soybeans. Together these findings suggest the following: (1) soil C is relatively resistant to changes in land use and (2) conversion to cropland caused a small, measurable reduction in the fast\uffe2\uff80\uff90cycling C pool through reduced OM inputs, mobilization of older C from soil mixing, and/or destabilization of SOM in surface soils.Metasurfaces have emerged as a breakthrough platform for manipulating light at the nanoscale and enabling on\uffe2\uff80\uff90demand optical functionalities for next\uffe2\uff80\uff90generation biosensing, imaging, and light\uffe2\uff80\uff90generating photonic devices. However, translating this technology to practical applications requires low\uffe2\uff80\uff90cost and high\uffe2\uff80\uff90throughput fabrication methods. Due to the limited choice of materials with suitable optical properties, it is particularly challenging to produce metasurfaces for the technologically relevant mid\uffe2\uff80\uff90infrared spectral range. These constraints are overcome by realizing functional metasurfaces on almost completely transparent free\uffe2\uff80\uff90standing metal\uffe2\uff80\uff90oxide membranes. A versatile nanofabrication process is developed and implemented for highly efficient dielectric and plasmonic mid\uffe2\uff80\uff90infrared metasurfaces with wafer\uffe2\uff80\uff90scale and complementary metal\uffe2\uff80\uff93oxide\uffe2\uff80\uff93semiconductor (CMOS)\uffe2\uff80\uff90compatible manufacturing techniques. The advantages of this method are revealed by demonstrating highly uniform and functional metasurfaces, including high\uffe2\uff80\uff90Q structures enabling fine spectral selectivity, large\uffe2\uff80\uff90area metalenses\uffc2\uffa0with\uffc2\uffa0diffraction\uffe2\uff80\uff90limited focusing capabilities, and birefringent metasurfaces providing polarization control at record\uffe2\uff80\uff90high conversion efficiencies.\uffc2\uffa0 Aluminum plasmonic devices and their integration into microfluidics for real\uffe2\uff80\uff90time and label\uffe2\uff80\uff90free mid\uffe2\uff80\uff90infrared biosensing of proteins and lipid vesicles are further demonstrated. The versatility of this approach and its compatibility with mass\uffe2\uff80\uff90production processes bring infrared metasurfaces markedly closer to commercial applications, such as thermal imaging, spectroscopy, and biosensing.Atmospheric nitrogen (N) deposition greatly affects ecosystem processes and properties. However, few studies have simultaneously examined the responses of both the above\uffe2\uff80\uff90 and belowground communities to N deposition. Here, we investigated the effects of 8\uffc2\uffa0years of simulated N deposition on soil microbial communities and plant diversity in a subtropical forest. The quantities of experimental N added (g of N m\uffe2\uff88\uff922\uffc2\uffa0year\uffe2\uff88\uff921) and treatment codes were 0 (N0, control), 6 (N1), 12 (N2), and 24 (N3). Phospholipid fatty acids (PLFAs) analysis was used to characterize the soil microbial community while plant diversity and coverage were determined in the permanent field plots. Microbial abundance was reduced by the N3 treatment, and plant species richness and coverage were reduced by both N2 and N3 treatments. Declines in plant species richness were associated with decreased abundance of arbuscular mycorrhizal fungi, increased bacterial stress index, and reduced soil pH. The plasticity of soil microbial community would be more related to the different responses among treatments when compared with plant community. These results indicate that long\uffe2\uff80\uff90term N deposition has greater effects on the understory plant community than on the soil microbial community and different conservation strategies should be considered.
", "keywords": ["580", "XXXXXX - Unknown", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Original Research"]}, "links": [{"href": "https://doi.org/10.1002/ece3.750"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.750", "name": "item", "description": "10.1002/ece3.750", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.750"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-09-16T00:00:00Z"}}, {"id": "10.1002/ece3.1420", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:13Z", "type": "Journal Article", "created": "2015-02-17", "title": "No-Tillage And Fertilization Management On Crop Yields And Nitrate Leaching In North China Plain", "description": "AbstractA field experiment was performed from 2003 to 2008 to evaluate the effects of tillage system and nitrogen management regimes on crop yields and nitrate leaching from the fluvo\uffe2\uff80\uff90aquic soil with a winter wheat (Triticum aestivum L.)\uffe2\uff80\uff93maize (Zea mays L.)double\uffe2\uff80\uff90cropping system. The tillage systems consisted of conventional tillage (CT) and no\uffe2\uff80\uff90tillage (NT). Three nitrogen management regimes were included: 270\uffc2\uffa0kg\uffc2\uffa0N\uffc2\uffa0ha\uffe2\uff88\uff921of urea for wheat and 225\uffc2\uffa0kg\uffc2\uffa0N\uffc2\uffa0ha\uffe2\uff88\uff921of urea for maize (U), 180\uffc2\uffa0kg\uffc2\uffa0N\uffc2\uffa0ha\uffe2\uff88\uff921of urea and 90\uffc2\uffa0kg\uffc2\uffa0N\uffc2\uffa0ha\uffe2\uff88\uff921of straw for wheat and 180\uffc2\uffa0kg N of urea and 45\uffc2\uffa0kg\uffc2\uffa0N\uffc2\uffa0ha\uffe2\uff88\uff921of straw for maize (S), 180\uffc2\uffa0kg\uffc2\uffa0N\uffc2\uffa0ha\uffe2\uff88\uff921of urea and 90\uffc2\uffa0kg\uffc2\uffa0N\uffc2\uffa0ha\uffe2\uff88\uff921of manure for wheat and 180\uffc2\uffa0kg\uffc2\uffa0N\uffc2\uffa0ha\uffe2\uff88\uff921of urea and 45\uffc2\uffa0kg\uffc2\uffa0N\uffc2\uffa0ha\uffe2\uff88\uff921of manure for maize (M). An array of tension\uffe2\uff80\uff90free pan lysimeters (50\uffc2\uffa0cm\uffc2\uffa0\uffc3\uff97\uffc2\uffa075\uffc2\uffa0cm) were installed (1.2\uffc2\uffa0m deep) to measure water flow and\uffe2\uff80\uff90N movement. No significant effect of the N management regime on yields of winter wheat and maize grain was found in the 5\uffe2\uff80\uff90year rotation. Tillage systems had significant influences on\uffe2\uff80\uff90N leaching from the second year and thereafter interacted with N management regimes on\uffe2\uff80\uff90N loads during all maize seasons. The average yield\uffe2\uff80\uff90scaled\uffe2\uff80\uff90N leaching losses were in order ofCTS<NTS<CTU<NTU<CTM<NTM, ranging from 0.88 (CTS) to 6.07 (NTM) kg\uffc2\uffa0N\uffc2\uffa0Mg\uffe2\uff88\uff921for winter wheat system and from 0.99 (CTS) to 6.27 (NTM) kg\uffc2\uffa0N\uffc2\uffa0Mg\uffe2\uff88\uff921for summer maize system for 5 rotation years. The results showed thatCTSdecreased the yield\uffe2\uff80\uff90scaled\uffe2\uff80\uff90N leaching losses while sustaining crop grain yields. Considering the lower costs,NTScould be a potential alternative to decrease yield\uffe2\uff80\uff90scaled\uffe2\uff80\uff90N leaching losses and improve soil fertility while maintaining crop yield for the winter wheat\uffe2\uff80\uff93maize double\uffe2\uff80\uff90cropping systems in the North China Plain.
", "keywords": ["2. Zero hunger", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water", "Original Research"]}, "links": [{"href": "https://doi.org/10.1002/ece3.1420"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.1420", "name": "item", "description": "10.1002/ece3.1420", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.1420"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-02-17T00:00:00Z"}}, {"id": "10.1002/ece3.1646", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:13Z", "type": "Journal Article", "created": "2015-08-26", "title": "Warming Decreased And Grazing Increased Plant Uptake Of Amino Acids In An Alpine Meadow", "description": "AbstractOrganic nitrogen (N) uptake by plants has been recognized as a significant component of terrestrial N cycle. Several studies indicated that plants have the ability to switch their preference between inorganic and organic forms of N in diverse environments; however, research on plant community response in organic nitrogen uptake to warming and grazing is scarce. Here, we demonstrated that organic N uptake by an alpine plant community decreased under warming with 13C\uffe2\uff80\uff9315N\uffe2\uff80\uff90enriched glycine addition method. After 6\uffc2\uffa0years of treatment, warming decreased plant organic N uptake by 37% as compared to control treatment. Under the condition of grazing, warming reduced plant organic N uptake by 44%. Grazing alone significantly increased organic N absorption by 15%, whereas under warming condition grazing did not affect organic N uptake by the Kobresia humilis community on Tibetan Plateau. Besides, soil NO3\uffe2\uff80\uff93N content explained more than 70% of the variability observed in glycine uptake, and C:N ratio in soil dissolved organic matter remarkably increased under warming treatment. These results suggested warming promoted soil microbial activity and dissolved organic N mineralization. Grazing stimulated organic N uptake by plants, which counteracted the effect of warming.
", "keywords": ["2. Zero hunger", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Original Research", "3. Good health"]}, "links": [{"href": "https://doi.org/10.1002/ece3.1646"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.1646", "name": "item", "description": "10.1002/ece3.1646", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.1646"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-08-26T00:00:00Z"}}, {"id": "10.1002/ece3.1685", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:13Z", "type": "Journal Article", "created": "2015-09-02", "title": "Belowground Carbon Responses To Experimental Warming Regulated By Soil Moisture Change In An Alpine Ecosystem Of The Qinghai-Tibet Plateau", "description": "AbstractRecent studies found that the largest uncertainties in the response of the terrestrial carbon cycle to climate change might come from changes in soil moisture under the elevation of temperature. Warming\uffe2\uff80\uff90induced change in soil moisture and its level of influence on terrestrial ecosystems are mostly determined by climate, soil, and vegetation type and their sensitivity to temperature and moisture. Here, we present the results from a warming experiment of an alpine ecosystem conducted in the permafrost region of the Qinghai\uffe2\uff80\uff93Tibet Plateau using infrared heaters. Our results show that 3\uffc2\uffa0years of warming treatments significantly elevated soil temperature at 0\uffe2\uff80\uff93100\uffc2\uffa0cm depth, decreased soil moisture at 10\uffc2\uffa0cm depth, and increased soil moisture at 40\uffe2\uff80\uff93100\uffc2\uffa0cm depth. In contrast to the findings of previous research, experimental warming did not significantly affect NH4+\uffe2\uff80\uff90N, NO3\uffe2\uff88\uff92\uffe2\uff80\uff90N, and heterotrophic respiration, but stimulated the growth of plants and significantly increased root biomass at 30\uffe2\uff80\uff9350\uffc2\uffa0cm depth. This led to increased soil organic carbon, total nitrogen, and liable carbon at 30\uffe2\uff80\uff9350\uffc2\uffa0cm depth, and increased autotrophic respiration of plants. Analysis shows that experimental warming influenced deeper root production via redistributed soil moisture, which favors the accumulation of belowground carbon, but did not significantly affected the decomposition of soil organic carbon. Our findings suggest that future climate change studies need to take greater consideration of changes in the hydrological cycle and the local ecosystem characteristics. The results of our study will aid in understanding the response of terrestrial ecosystems to climate change and provide the regional case for global ecosystem models.
", "keywords": ["13. Climate action", "8. Economic growth", "15. Life on land", "01 natural sciences", "Original Research", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1002/ece3.1685"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.1685", "name": "item", "description": "10.1002/ece3.1685", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.1685"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-09-01T00:00:00Z"}}, {"id": "10.1002/ece3.8676", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:14Z", "type": "Journal Article", "created": "2022-03-08", "title": "Effects of operational taxonomic unit inference methods on soil microeukaryote community analysis using long-read metabarcoding", "description": "AbstractLong amplicon metabarcoding has opened the door for phylogenetic analysis of the largely unknown communities of microeukaryotes in soil. Here, we amplified and sequenced the ITS and LSU regions of the rDNA operon (around 1500\uffc2\uffa0bp) from grassland soils using PacBio SMRT sequencing. We tested how three different methods for generation of operational taxonomic units (OTUs) effected estimated richness and identified taxa, and how well large\uffe2\uff80\uff90scale ecological patterns associated with shifting environmental conditions were recovered in data from the three methods. The field site at Kungs\uffc3\uffa4ngen Nature Reserve has drawn frequent visitors since Linnaeus's time, and its species rich vegetation includes the largest population of Fritillaria meleagris in Sweden. To test the effect of different OTU generation methods, we sampled soils across an abrupt moisture transition that divides the meadow community into a Carex acuta dominated plant community with low species richness in the wetter part, which is visually distinct from the mesic\uffe2\uff80\uff90dry part that has a species rich grass\uffe2\uff80\uff90dominated plant community including a high frequency of F.\uffc2\uffa0meleagris. We used the moisture and plant community transition as a framework to investigate how detected belowground microeukaryotic community composition was influenced by OTU generation methods. Soil communities in both moisture regimes were dominated by protists, a large fraction of which were taxonomically assigned to Ciliophora (Alveolata) while 30%\uffe2\uff80\uff9340% of all reads were assigned to kingdom Fungi. Ecological patterns were consistently recovered irrespective of OTU generation method used. However, different methods strongly affect richness estimates and the taxonomic and phylogenetic resolution of the characterized community with implications for how well members of the microeukaryotic communities can be recognized in the data.
", "keywords": ["580", "species hypothesis", "Ekologi", "0301 basic medicine", "0303 health sciences", "Ecology", "rDNA", "Biological Systematics", "15. Life on land", "03 medical and health sciences", "14. Life underwater", "ITS", "Research Articles", "clustering"]}, "links": [{"href": "https://pub.epsilon.slu.se/27699/1/eshghi-sahraei-s-et-al-220505.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/ece3.8676"}, {"href": "https://doi.org/10.1002/ece3.8676"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.8676", "name": "item", "description": "10.1002/ece3.8676", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.8676"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-03-01T00:00:00Z"}}, {"id": "10.1002/ece3.1732", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:13Z", "type": "Journal Article", "created": "2015-09-23", "description": "AbstractIn recent decades, alpine grasslands have been seriously degraded on the Tibetan Plateau and grazing exclusion by fencing has been widely adopted to restore degraded grasslands since 2004. To elucidate how alpine grasslands carbon (C), nitrogen (N), and phosphorus (P) storage responds to this management strategy, three types of alpine grassland in nine counties in Tibet were selected to investigate C, N, and P storage in the environment by comparing free grazing (FG) and grazing exclusion (GE) treatments, which had run for 6\uffe2\uff80\uff938\uffc2\uffa0years. The results revealed that there were no significant differences in total ecosystem C, N, and P storage, as well as the C, N, and P stored in both total biomass and soil (0\uffe2\uff80\uff9330\uffc2\uffa0cm) fractions between FG and GE grasslands. However, precipitation played a key role in controlling C, N, and P storage and distribution. With grazing exclusion, C and N stored in aboveground biomass significantly increased by 5.7\uffc2\uffa0g m\uffe2\uff88\uff922 and 0.1\uffc2\uffa0g m\uffe2\uff88\uff922, respectively, whereas the C and P stored in the soil surface layer (0\uffe2\uff80\uff9315\uffc2\uffa0cm) significantly decreased by 862.9\uffc2\uffa0g m\uffe2\uff88\uff922 and 13.6\uffc2\uffa0g m\uffe2\uff88\uff922, respectively. Furthermore, the storage of the aboveground biomass C, N, and P was positively correlated with vegetation cover and negatively correlated with the biodiversity index, including Pielou evenness index, Shannon\uffe2\uff80\uff93Wiener diversity index, and Simpson dominance index. The storage of soil surface layer C, N, and P was positively correlated with soil silt content and negatively correlated with soil sand content. Our results demonstrated that grazing exclusion had no impact on total C, N, and P storage, as well as C, N, and P in both total biomass and soil (0\uffe2\uff80\uff9330\uffc2\uffa0cm) fractions in the alpine grassland ecosystem. However, grazing exclusion could result in increased aboveground biomass C and N pools and decreased soil surface layer (0\uffe2\uff80\uff9315\uffc2\uffa0cm) C\uffc2\uffa0and P pools.
", "keywords": ["2. Zero hunger", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "Original Research", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1002/ece3.1732"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.1732", "name": "item", "description": "10.1002/ece3.1732", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.1732"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-09-23T00:00:00Z"}}, {"id": "10.1002/ece3.1867", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:13Z", "type": "Journal Article", "created": "2016-01-11", "title": "Grazing Exclusion Reduced Soil Respiration But Increased Its Temperature Sensitivity In A Meadow Grassland On The Tibetan Plateau", "description": "AbstractUnderstanding anthropogenic influences on soil respiration (Rs) is critical for accurate predictions of soil carbon fluxes, but it is not known how Rs responds to grazing exclusion (GE). Here, we conducted a manipulative experiment in a meadow grassland on the Tibetan Plateau to investigate the effects of GE on Rs. The exclusion of livestock significantly increased soil moisture and above\uffe2\uff80\uff90ground biomass, but it decreased soil temperature, microbial biomass carbon (MBC), and Rs. Regression analysis indicated that the effects of GE on Rs were mainly due to changes in soil temperature, soil moisture, and MBC. Compared with the grazed blocks, GE significantly decreased soil carbon release by 23.6% over the growing season and 21.4% annually, but it increased the temperature sensitivity (Q10) of Rs by 6.5% and 14.2% for the growing season and annually respectively. Therefore, GE may reduce the release of soil carbon from the Tibetan Plateau, but under future climate warming scenarios, the increases in Q10 induced by GE could lead to increased carbon emissions.
", "keywords": ["570", "MICROBIAL RESPIRATION", "Environmental Sciences & Ecology", "Plant Productivity", "Temperature Sensitivity", "ALPINE GRASSLAND", "630", "Microbial Biomass Carbon", "NORTHERN CHINA", "SEASONAL PATTERNS", "MOUNTAIN GRASSLANDS", "Grazing Exclusion", "Tibetan Plateau", "PLANT-COMMUNITIES", "Original Research", "2. Zero hunger", "Science & Technology", "CLIMATE-CHANGE", "CO2 EFFLUX", "Ecology", "04 agricultural and veterinary sciences", "15. Life on land", "INNER-MONGOLIA", "BELOW-GROUND BIOMASS", "Soil Respiration", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Life Sciences & Biomedicine"]}, "links": [{"href": "https://doi.org/10.1002/ece3.1867"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.1867", "name": "item", "description": "10.1002/ece3.1867", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.1867"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-01-11T00:00:00Z"}}, {"id": "10.1002/ece3.1879", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:14Z", "type": "Journal Article", "created": "2016-01-22", "title": "Effects Of Fertilization On Microbial Abundance And Emissions Of Greenhouse Gases (Ch4 And N2o) In Rice Paddy Fields", "description": "AbstractThis study is to explore effects of nitrogen application and straw incorporation on abundance of relevant microbes and CH4 and N2O fluxes in a midseason aerated rice paddy field. Fluxes of CH4 and N2O were recorded, and abundance of relevant soil microbial functional genes was determined during rice\uffe2\uff80\uff90growing season in a 6\uffe2\uff80\uff90year\uffe2\uff80\uff90long fertilization experiment field in China. Results indicate that application of urea significantly changed the functional microbial composition, while the influence of straw incorporation was not significant. Application of urea significantly decreased the gene abundances of archaeal amoA and mcrA, but it significantly increased the gene abundances of bacterial amoA. CH4 emission was significantly increased by fresh straw incorporation. Incorporation of burnt straw tended to increase CH4 emission, while the urea application had no obvious effect on CH4 emission. N2O emission was significantly increased by urea application, while fresh or burnt straw incorporation tended to decrease N2O emission. The functional microbial composition did not change significantly over time, although the abundances of pmoA, archaeal amoA, nirS, and nosZ genes changed significantly. The change of CH4 emission showed an inverse trend with the one of the N2O emissions over time. To some extent, the abundance of some functional genes in this study can explain CH4 and N2O emissions. However, the correlation between CH4 and N2O emissions and the abundance of related functional genes was not significant. Environmental factors, such as soil Eh, may be more related to CH4 and N2O emissions.
", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "03 medical and health sciences", "13. Climate action", "15. Life on land", "Original Research"]}, "links": [{"href": "https://doi.org/10.1002/ece3.1879"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.1879", "name": "item", "description": "10.1002/ece3.1879", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.1879"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-01-22T00:00:00Z"}}, {"id": "10.1002/ece3.6547", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:14Z", "type": "Journal Article", "created": "2020-07-09", "title": "The distribution of herbivores between leaves matches their performance only in the absence of competitors", "description": "AbstractFew studies have tested how plant quality and the presence of competitors interact in determining how herbivores choose between different leaves within a plant. We investigated this in two herbivorous spider mites sharing tomato plants: Tetranychus urticae, which generally induces plant defenses, and Tetranychus evansi, which suppresses them, creating asymmetrical effects on coinfesting competitors. On uninfested plants, both herbivore species preferred young leaves, coinciding with increased mite performance. On plants with heterospecifics, the mites did not prefer leaves on which they had a better performance. In particular, T.\uffc2\uffa0urticae avoided leaves infested with T.\uffc2\uffa0evansi, which is in agreement with T.\uffc2\uffa0urticae being outcompeted by T.\uffc2\uffa0evansi. In contrast, T.\uffc2\uffa0evansi did not avoid leaves with the other species, but distributed itself evenly over plants infested with heterospecifics. We hypothesize that this behavior of T.\uffc2\uffa0evansi may prevent further spread of T.\uffc2\uffa0urticae over the shared plant. Our results indicate that leaf age determines within\uffe2\uff80\uff90plant distribution of herbivores only in absence of competitors. Moreover, they show that this distribution depends on the order of arrival of competitors and on their effects on each other, with herbivores showing differences in behavior within the plant as a possible response to the outcome of those interactions.The stability over time of the organic C stocked in soils under undisturbed ecosystems is poorly studied, despite being suitable for detecting changes related to climate fluctuations and global warming. Volcanic soils often show high organic C contents due to the stabilization of organic matter by short\uffe2\uff80\uff90range ordered minerals or Al\uffe2\uff80\uff90humus complexes. We investigated the dynamics of different organic C fractions in volcanic soils of protected natural ecosystems of the Canary Islands (Spain) to evaluate the stability of their C pools. The study was carried out in 10 plots, including both undisturbed and formerly disturbed ecosystems, over two annual periods. C inputs to (litterfall) and outputs from (respiration) the soil, root C stocks (0\uffe2\uff80\uff9330\uffc2\uffa0cm), soil organic C (SOC) fractions belonging to C pools with different degrees of biogeochemical stability \uffe2\uff80\uff93total oxidisable C (TOC), microbial biomass C (MBC), water soluble C (WSC), hot\uffe2\uff80\uff90water extractable C (HWC), humic C (HSC), \uffe2\uff80\uff93 and total soil N (TN) (at 0\uffe2\uff80\uff9315 and 15\uffe2\uff80\uff9330\uffc2\uffa0cm) were measured seasonally.A statistically significant interannual increase in CO2 emissions and a decrease in the SOC, mainly at the expense of the most labile organic forms, were observed, while the root C stocks and litterfall inputs remained relatively constant over the study period. The observed changes may reflect an initial increase in SOC resulting from low soil respiration rates due to drought during the first year of study. The soils of nearly mature ecosystems were more apparently affected by C losses, while those undergoing the process of active natural regeneration exhibited disguised C loss because of the C sequestration trend that is characteristic of progressive ecological succession.
", "keywords": ["2. Zero hunger", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water", "Original Research"]}, "links": [{"href": "https://doi.org/10.1002/ece3.355"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.355", "name": "item", "description": "10.1002/ece3.355", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.355"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-08-24T00:00:00Z"}}, {"id": "10.1002/ece3.403", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:14Z", "type": "Journal Article", "created": "2012-11-02", "title": "Is The Change Of Winter Wheat Yield Under Warming Caused By Shortened Reproductive Period?", "description": "AbstractPrevious reports from laboratory\uffe2\uff80\uff90controlled experiments and models considered that a shorter reproductive period could be the main reason for wheat yield reduction in the warmer world. However, this conclusion needs to be proved carefully by field\uffe2\uff80\uff90scale experiments. In this study, a field\uffe2\uff80\uff90scale continuous open\uffe2\uff80\uff90warming experiment was conducted to quantify the adjustment of winter wheat growth and yield under conventional tillage (CT) and no\uffe2\uff80\uff90till (NT) systems in the North China Plain (NCP). Canopy temperatures were warmed using infrared heaters between 1.0 and 1.6\uffc2\uffb0C (daytime and nighttime, respectively) above the control. Wheat yields under CT were not significantly reduced over the two seasons (2010 and 2011), but yields under NT were 3.3% and 6.1% lower, respectively. The growing seasons for both CT and NT were shortened 6\uffc2\uffa0days in 2010 and 11\uffc2\uffa0days in 2011; however, the reproductive periods were maintained. The shortened days were due to a significantly shorter springtime re\uffe2\uff80\uff90greening stage followed by minimal changes in other phenological stages (jointing, flag completed, heading, anthesis, and grain\uffe2\uff80\uff90filling). The temporal advance by warming resulted in lower growing\uffe2\uff80\uff90season mean air temperatures (MAT) for warmed plots than the control from 0.23 to 4.22\uffc2\uffb0C for the same subsequent phenological stages. Warming increased the number of tillers\uffc2\uffa0m\uffe2\uff88\uff922 and kernel weight, but tended to decrease the number of spikes\uffc2\uffa0m\uffe2\uff88\uff922 in the two tillage systems. The heavier kernels offset the yield reduction from smaller number of spikes. Warming increased the wheat aboveground biomass from 10% to 20% suggesting the potential to sequester more CO2. This study suggests that winter wheat might adjust its growth (shortened vegetative period to maintain reproductive period) to partly compensate for the negative effects from global warming in this temperate irrigated cropland.
", "keywords": ["0106 biological sciences", "2. Zero hunger", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "Original Research"]}, "links": [{"href": "https://doi.org/10.1002/ece3.403"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.403", "name": "item", "description": "10.1002/ece3.403", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.403"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-11-02T00:00:00Z"}}, {"id": "10.1002/ece3.4079", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:14Z", "type": "Journal Article", "created": "2018-05-04", "title": "Shrimp Ponds Lead To Massive Loss Of Soil Carbon And Greenhouse Gas Emissions In Northeastern Brazilian Mangroves", "description": "AbstractMangroves of the semiarid Caatinga region of northeastern Brazil are being rapidly converted to shrimp pond aquaculture. To determine ecosystem carbon stocks and potential greenhouse gas emissions from this widespread land use, we measured carbon stocks of eight mangrove forests and three shrimp ponds in the Acara\uffc3\uffba and Jaguaribe watersheds in Cear\uffc3\uffa1 state, Brazil. The shrimp ponds were paired with adjacent intact mangroves to ascertain carbon losses and potential emissions from land conversion. The mean total ecosystem carbon stock of mangroves in this semiarid tropical landscape was 413\uffc2\uffa0\uffc2\uffb1\uffc2\uffa094 Mg C/ha. There were highly significant differences in the ecosystem carbon stocks between the two sampled estuaries suggesting caution when extrapolating carbon stock across different estuaries even in the same landscape. Conversion of mangroves to shrimp ponds resulted in losses of 58%\uffe2\uff80\uff9382% of the ecosystem carbon stocks. The mean potential emissions arising from mangrove conversion to shrimp ponds was 1,390 Mg CO2e/ha. Carbon losses were largely from soils which accounted for 81% of the total emission. Losses from soils >100\uffc2\uffa0cm in depth accounted for 33% of the total ecosystem carbon loss. Soil carbon losses from shrimp pond conversion are equivalent to about 182\uffc2\uffa0years of soil carbon accumulation. Losses from mangrove conversion are about 10\uffe2\uff80\uff90fold greater than emissions from conversion of upland tropical dry forest in the Brazilian Caatinga underscoring the potential value for their inclusion in climate change mitigation activities.
", "keywords": ["0106 biological sciences", "13. Climate action", "11. Sustainability", "15. Life on land", "01 natural sciences", "Original Research", "0105 earth and related environmental sciences", "12. Responsible consumption"]}, "links": [{"href": "https://doi.org/10.1002/ece3.4079"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.4079", "name": "item", "description": "10.1002/ece3.4079", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.4079"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-05-04T00:00:00Z"}}, {"id": "10.1002/ece3.6474", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:14Z", "type": "Journal Article", "created": "2020-06-17", "title": "Tree litter functional diversity and nitrogen concentration enhance litter decomposition via changes in earthworm communities", "description": "AbstractBiodiversity is a major driver of numerous ecosystem functions. However, consequences of changes in forest biodiversity remain difficult to predict because of limited knowledge about how tree diversity influences ecosystem functions. Litter decomposition is a key process affecting nutrient cycling, productivity, and carbon storage and can be influenced by plant biodiversity. Leaf litter species composition, environmental conditions, and the detritivore community are main components of the decomposition process, but their complex interactions are poorly understood. In this study, we tested the effect of tree functional diversity (FD) on litter decomposition in a field experiment manipulating tree diversity and partitioned the effects of litter physiochemical diversity and the detritivore community. We used litterbags with different mesh sizes to separate the effects of microorganisms and microfauna, mesofauna, and macrofauna and monitored soil fauna using pitfall traps and earthworm extractions. We hypothesized that higher tree litter FD accelerates litter decomposition due to the availability of complementary food components and higher activity of detritivores. Although we did not find direct effects of tree FD on litter decomposition, we identified key litter traits and macrodetritivores that explained part of the process. Litter mass loss was found to decrease with an increase in leaf litter carbon:nitrogen ratio. Moreover, litter mass loss increased with an increasing density of epigeic earthworms, with most pronounced effects in litterbags with a smaller mesh size, indicating indirect effects. Higher litter FD and litter nutrient content were found to increase the density of surface\uffe2\uff80\uff90dwelling macrofauna and epigeic earthworm biomass. Based on structural equation modeling, we conclude that tree FD has a weak positive effect on soil surface litter decomposition by increasing the density of epigeic earthworms and that litter nitrogen\uffe2\uff80\uff90related traits play a central role in tree composition effects on soil fauna and decomposition.
", "keywords": ["0106 biological sciences", "BIOTREE", "Ecology", "577", "macrodetritivores", "15. Life on land", "01 natural sciences", "biodiversity\u2013ecosystem function", "litter mass loss", "litter traits", "13. Climate action", "decomposers", "QH540-549.5", "Original Research"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/ece3.6474"}, {"href": "https://doi.org/10.1002/ece3.6474"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ece3.6474", "name": "item", "description": "10.1002/ece3.6474", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ece3.6474"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-06-17T00:00:00Z"}}, {"id": "10.1002/ecs2.2645", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:14Z", "type": "Journal Article", "created": "2019-03-19", "title": "Uneven global distribution of food web studies under climate change", "description": "AbstractTrophic interactions within food webs affect species distributions, coexistence, and provision of ecosystem services but can be strongly impacted by climatic changes. Understanding these impacts is therefore essential for managing ecosystems and sustaining human well\uffe2\uff80\uff90being. Here, we conducted a global synthesis of terrestrial, marine, and freshwater studies to identify key gaps in our knowledge of climate change impacts on food webs and determine whether the areas currently studied are those most likely to be impacted by climate change. We found research suffers from a strong geographic bias, with only 3.5% of studies occurring in the tropics. Importantly, the distribution of sites sampled under projected climate changes was biased\uffe2\uff80\uff94areas with decreases or large increases in precipitation and areas with low magnitudes of temperature change were under\uffe2\uff80\uff90represented. Our results suggest that understanding of climate change impacts on food webs could be broadened by considering more than two trophic levels, responses in addition to species abundance and biomass, impacts of a wider suite of climatic variables, and tropical ecosystems. Most importantly, to enable better forecasts of biodiversity responses to climate change, we identify critically under\uffe2\uff80\uff90represented geographic regions and climatic conditions which should be prioritized in future research.For the development of a sweet potato leaf powder (SPLP)\uffe2\uff80\uff90based beverage, we investigated the effects of blanching methods on SPLP quality (including color, nutritional and functional compositions and antioxidant activity), and the effects of particle size and stabilizers on suspension stability of final product. The total polyphenol and antioxidant activity of SPLP of uncut group were 1.69 and 1.91 times those of cut group, respectively, and the indices of nutritional quality of copper, manganese and vitamin E of uncut group were significantly greater than cut group. The ultrafine SPLP\uffe2\uff80\uff90produced lowest gravitational sedimentation ratio (49%), indicating it had greatest suspension stability. The optimized formula of SPLP\uffe2\uff80\uff90based beverage was as follows: ultrafine SPLP of uncut group was mixed with 2.5% (w/w, powder basis) xanthan gum, 1% calcium lactate, 2% ascorbic acid, 12% maltodextrin, 20% xylitol, and 0.9% apple essence. The final product had high nutritional value along with consumer\uffe2\uff80\uff90acceptable flavor and texture.
", "keywords": ["2. Zero hunger", "0404 agricultural biotechnology", "suspension stability ; index of nutritional quality ; blanching ; particle size ; sweet potato leaves", "04 agricultural and veterinary sciences", "6. Clean water", "Original Research"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/fsn3.1555"}, {"href": "https://doi.org/10.1002/fsn3.1555"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Food%20Science%20%26amp%3B%20Nutrition", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/fsn3.1555", "name": "item", "description": "10.1002/fsn3.1555", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/fsn3.1555"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-05-07T00:00:00Z"}}, {"id": "10.1002/fsn3.1675", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:15Z", "type": "Journal Article", "created": "2020-07-15", "title": "Valorization of the green waste parts from sweet potato ( Impoea batatas L.): Nutritional, phytochemical composition, and bioactivity evaluation", "description": "AbstractIn the present study, leaves from 13 sweet potato cultivars were collected as raw materials. The nutritional and functional composition, antioxidant activity, and sunscreen activity of different sweet potato leaf samples were determined, and the comprehensive nutritional quality was calculated by gray relational analysis. Results showed that the nutritional and functional components are significantly different between different cultivars. Tainong71 showed the highest comprehensive nutritional quality, followed by Fu22, Ningcai, Fu23, Ecai10, Zhecai726, Ecai1, Fu18, Pushu53, Guangcai5, Shulv1, Guangcai2, and Zhecai1. The antioxidant activity varied from 3.94 to 16.75\uffc2\uffa0g Trolox equivalent/100\uffc2\uffa0g dry weight. Pushu53 showed the highest sunscreen activity, with the sun protection factor 24.65. There was a positive correlation between antioxidant activity and sunscreen activity (r\uffc2\uffa0=\uffc2\uffa0.737, p\uffc2\uffa0=\uffc2\uffa0.004). In conclusion, sweet potato leaves possess high nutritional and functional properties, and have the huge potential to be used as green leafy vegetables and sunscreen agent.
", "keywords": ["2. Zero hunger", "0404 agricultural biotechnology", "chemical/nutritional characterization ; antioxidant activity ; correlation analysis ; sunscreen acitvity ; gray relational analysis ; sweet potato leaves", "04 agricultural and veterinary sciences", "0405 other agricultural sciences", "Original Research"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/fsn3.1675"}, {"href": "https://doi.org/10.1002/fsn3.1675"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Food%20Science%20%26amp%3B%20Nutrition", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/fsn3.1675", "name": "item", "description": "10.1002/fsn3.1675", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/fsn3.1675"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-07-14T00:00:00Z"}}, {"id": "10.1002/hyp.14667", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:15Z", "type": "Journal Article", "created": "2022-08-09", "title": "Non\u2010linearity in event runoff generation in a small agricultural catchment", "description": "AbstractUnderstanding the role of soil moisture and other controls in runoff generation is important for predicting runoff across scales. This paper aims to identify the degree of non\uffe2\uff80\uff90linearity of the relationship between event peak runoff and potential controls for different runoff generation mechanisms in a small agricultural catchment. The study is set in the 66\uffe2\uff80\uff89ha Hydrological Open Air Laboratory, Austria, where discharge was measured at the catchment outlet and for 11 sub\uffe2\uff80\uff90catchments or hillslopes with different runoff generation mechanisms. Peak runoff of 73 events was related to three potential controls: event precipitation, soil moisture and groundwater levels. The results suggest that the hillslopes dominated by ephemeral overland flow exhibit the most non\uffe2\uff80\uff90linear runoff generation behaviour for its controls; runoff is only generated above a threshold of 95% of the maximum soil moisture. Runoff generation through tile drains and in wetlands is more linear. The largest winter and spring events at the catchment outlet are caused by runoff from hillslopes with shallow flow paths (ephemeral overland flow and tile drainage mechanisms), while the largest summer events are caused by other hillslopes, those with deeper flow paths or with saturation areas throughout the year. Therefore, the response of the entire catchment is a mix of the various mechanisms, and the groundwater contribution makes the response more linear. The implications for hydrological modelling are discussed.Meeting the energy and nitrogen (N) requirements of high\uffe2\uff80\uff90performing ruminants at the same time as avoiding digestive disturbances (i.e. rumen acidosis) is a key priority in ruminant nutrition. The present study evaluated the effect of a cereal ammoniation treatment, in which barley grains are combined with urea and enzymes that catalyze the conversion of urea to ammonia to optimize rumen function. Twelve rumen cannulated sheep were randomly divided into two groups and fed a diet containing 60% of ammoniated barley (AMM) or untreated barley supplemented with urea (CTL) to investigate the impact on rumen fermentation and feed utilization.
RESULTSAMM had higher total N content and effective rumen degradable N than untreated barely. AMM sheep had a consistently higher rumen pH throughout the day (6.31 versus 6.03) and tended to have a lower post\uffe2\uff80\uff90prandial ammonia peak and higher acetate molar proportion (+5.1%) than CTL sheep. The rumen environment in AMM sheep favored the colonization and utilization of agro\uffe2\uff80\uff90industrial by\uffe2\uff80\uff90products (i.e. orange pulp) by the rumen microbes leading to a higher feed degradability. AMM sheep also had higher total tract apparent N digestibility (+21.7%) and urinary excretion of purine derivatives (+34%), suggesting a higher N uptake and microbial protein synthesis than CTL sheep.
CONCLUSIONThe inclusion of AMM in the diet of ruminants represents a valid strategy for maintaining rumen pH within a physiological range and improving N utilization by the rumen microbes, which could have positive effects on the health and productivity of animals in intensive production systems. These findings warrant further studies under conventional farm conditions. \uffc2\uffa9 2021 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
", "keywords": ["2. Zero hunger", "Rumen", "Sheep", "Bacteria", "Food Handling", "0402 animal and dairy science", "Hordeum", "04 agricultural and veterinary sciences", "Hydrogen-Ion Concentration", "Animal Feed", "Diet", "Gastrointestinal Microbiome", "Bacterial Proteins", "Ammonia", "Barley", "Rumen fermentation", "Animals", "Urea", "Ammoniation", "Digestion", "Feed utilization", "Research Articles"]}, "links": [{"href": "https://eprints.gla.ac.uk/235892/1/235892.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/jsfa.11205"}, {"href": "https://doi.org/10.1002/jsfa.11205"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20the%20Science%20of%20Food%20and%20Agriculture", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/jsfa.11205", "name": "item", "description": "10.1002/jsfa.11205", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/jsfa.11205"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-24T00:00:00Z"}}, {"id": "10.1002/ldr.3006", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:18Z", "type": "Journal Article", "created": "2018-05-12", "title": "Impacts of climate change adaptation options on soil functions: A review of European case-studies", "description": "AbstractSoils are vital for supporting food security and other ecosystem services. Climate change can affect soil functions both directly and indirectly. Direct effects include temperature, precipitation, and moisture regime changes. Indirect effects include those that are induced by adaptations such as irrigation, crop rotation changes, and tillage practices. Although extensive knowledge is available on the direct effects, an understanding of the indirect effects of agricultural adaptation options is less complete. A review of 20 agricultural adaptation case\uffe2\uff80\uff90studies across Europe was conducted to assess implications to soil threats and soil functions and the link to the Sustainable Development Goals (SDGs). The major findings are as follows: (a) adaptation options reflect local conditions; (b) reduced soil erosion threats and increased soil organic carbon are expected, although compaction may increase in some areas; (c) most adaptation options are anticipated to improve the soil functions of food and biomass production, soil organic carbon storage, and storing, filtering, transforming, and recycling capacities, whereas possible implications for soil biodiversity are largely unknown; and (d) the linkage between soil functions and the SDGs implies improvements to SDG 2 (achieving food security and promoting sustainable agriculture) and SDG 13 (taking action on climate change), whereas the relationship to SDG 15 (using terrestrial ecosystems sustainably) is largely unknown. The conclusion is drawn that agricultural adaptation options, even when focused on increasing yields, have the potential to outweigh the negative direct effects of climate change on soil degradation in many European regions.
", "keywords": ["sol", "[SDE.MCG]Environmental Sciences/Global Changes", "Sustainable Development Goals", "Sustainable development goals", "regional case studies", "adaptation", "Soil degradation", "01 natural sciences", "service \u00e9cosyst\u00e9mique", "630", "333", "soil", "12. Responsible consumption", "soil degradation", "Regional case-studies", "Agrucultural adaption", "DPSIR", "11. Sustainability", "regional case-studies", "Agricultural adaptation; DPSIR; Regional case-studies; Soil degradation; Sustainable Development Goals; Environmental Chemistry; Development3304 Education; 2300; Soil Science", "Climate change", "Research Articles", "0105 earth and related environmental sciences", "2. Zero hunger", "VDP::Landbruks- og Fiskerifag: 900", "agricultural adaptation", "15. Life on land", "6. Clean water", "services \u00e9cosyst\u00e9miques", "13. Climate action"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/ldr.3006"}, {"href": "https://doi.org/10.1002/ldr.3006"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Land%20Degradation%20%26amp%3B%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ldr.3006", "name": "item", "description": "10.1002/ldr.3006", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ldr.3006"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-05-30T00:00:00Z"}}, {"id": "10.1002/rcm.8478", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:19Z", "type": "Journal Article", "created": "2019-05-07", "title": "Determination of the triple oxygen and carbon isotopic composition of CO 2 from atomic ion fragments formed in the ion source of the 253 Ultra high\u2010resolution isotope ratio mass spectrometer", "description": "RationaleDetermination of \uffce\uffb417O values directly from CO2 with traditional gas source isotope ratio mass spectrometry is not possible due to isobaric interference of 13C16O16O on 12C17O16O. The methods developed so far use either chemical conversion or isotope equilibration to determine the \uffce\uffb417O value of CO2. In addition, \uffce\uffb413C measurements require correction for the interference from 12C17O16O on 13C16O16O since it is not possible to resolve the two isotopologues.
MethodsWe present a technique to determine the \uffce\uffb417O, \uffce\uffb418O and \uffce\uffb413C values of CO2 from the fragment ions that are formed upon electron ionization in the ion source of the Thermo Scientific 253 Ultra high\uffe2\uff80\uff90resolution isotope ratio mass spectrometer (hereafter 253 Ultra). The new technique is compared with the CO2\uffe2\uff80\uff90O2 exchange method and the 17O\uffe2\uff80\uff90correction algorithm for \uffce\uffb417O and \uffce\uffb413C values, respectively.
ResultsThe scale contractions for \uffce\uffb413C and \uffce\uffb418O values are slightly larger for fragment ion measurements than for molecular ion measurements. The \uffce\uffb417O and \uffce\uff9417O values of CO2 can be measured on the 17O+ fragment with an internal error that is a factor 1\uffe2\uff80\uff932 above the counting statistics limit. The ultimate precision depends on the signal intensity and on the total time that the 17O+ beam is monitored; a precision of 14\uffe2\uff80\uff89ppm (parts per million) (standard error of the mean) was achieved in 20\uffe2\uff80\uff89hours at the University of G\uffc3\uffb6ttingen. The \uffce\uff9417O measurements with the O\uffe2\uff80\uff90fragment method agree with the CO2\uffe2\uff80\uff90O2 exchange method over a range of \uffce\uff9417O values of \uffe2\uff88\uff920.3 to +0.7\uffe2\uff80\uffb0.
ConclusionsIsotope measurements on atom fragment ions of CO2 can be used as an alternative method to determine the carbon and oxygen isotopic composition of CO2 without chemical processing or corrections for mass interferences.
", "keywords": ["550", "NITROUS-OXIDE", "O-17/O-16", "ANALYTICAL SYSTEM", "01 natural sciences", "O-2", "0104 chemical sciences", "O-17 CORRECTION", "HIGH-PRECISION MEASUREMENTS", "13. Climate action", "Life Science", "ABUNDANCE", "DELTA-O-17", "EXCHANGE", "DIOXIDE", "Research Articles", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1002/rcm.8478"}, {"href": "https://doi.org/10.1002/rcm.8478"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Rapid%20Communications%20in%20Mass%20Spectrometry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/rcm.8478", "name": "item", "description": "10.1002/rcm.8478", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/rcm.8478"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-08-05T00:00:00Z"}}, {"id": "10.1002/pld3.401", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:19Z", "type": "Journal Article", "created": "2022-05-11", "title": "OsJAZ11 regulates spikelet and seed development in rice", "description": "AbstractSeed size is one of the major determinants of seed weight and eventually, crop yield. As the global population is increasing beyond the capacity of current food production, enhancing seed size is a key target for crop breeders. Despite the identification of several genes and QTLs, current understanding about the molecular regulation of seed size/weight remains fragmentary. In the present study, we report novel role of a jasmonic acid (JA) signaling repressor, OsJAZ11 controlling rice seed width and weight. Transgenic rice lines overexpressing OsJAZ11 exhibited up to a 14% increase in seed width and ~30% increase in seed weight compared to wild type (WT). Constitutive expression of OsJAZ11 dramatically influenced spikelet morphogenesis leading to extra glume\uffe2\uff80\uff90like structures, open hull, and abnormal numbers of floral organs. Furthermore, overexpression lines accumulated higher JA levels in spikelets and developing seeds. Expression studies uncovered altered expression of JA biosynthesis/signaling and MADS box genes in overexpression lines compared to WT. Yeast two\uffe2\uff80\uff90hybrid and pull\uffe2\uff80\uff90down assays revealed that OsJAZ11 interacts with OsMADS29 and OsMADS68. Remarkably, expression of OsGW7, a key negative regulator of grain size, was significantly reduced in overexpression lines. We propose that OsJAZ11 participates in the regulation of seed size and spikelet development by coordinating the expression of JA\uffe2\uff80\uff90related, OsGW7 and MADS genes.The combination of plant residues with inorganic fertiliser\uffe2\uff80\uff90N provides the potential to increase N\uffe2\uff80\uff90use efficiency in agricultural fruit production systems, such as olive orchards. The development of weeds in the inter\uffe2\uff80\uff90canopy area of olive orchards is encouraged as a novel strategy to reduce soil erosion. However, little is known about soil N retention or N2O production following the combined application of inorganic\uffe2\uff80\uff90N with the mulched weed residues.
METHODSEmissions of 15N\uffe2\uff80\uff90N2O and soil mineral 15N retention were measured following combined applications of 15N\uffe2\uff80\uff90labelled fertiliser and a range of olive crop weed residues to a silty loam soil under controlled conditions. These plant residues differed in their C:N ratios, lignin and polyphenol contents.
RESULTSThe magnitude of soil 15N\uffe2\uff80\uff90NO3\uffe2\uff80\uff93 retention from combining plant residues and fertiliser\uffe2\uff80\uff90N was highly dependent on potential N mineralisation (r\uffe2\uff80\uff89=\uffe2\uff80\uff89\uffe2\uff88\uff920.96) and the (lignin\uffe2\uff80\uff89+\uffe2\uff80\uff89polyphenol)\uffe2\uff80\uff90to\uffe2\uff80\uff90N ratio (r\uffe2\uff80\uff89=\uffe2\uff80\uff890.98) of the residues. Fertiliser\uffe2\uff80\uff90N\uffe2\uff80\uff90derived retention was zero for a legume\uffe2\uff80\uff90based mulch but up to 80% in the treatment containing plant residues with a high (lignin\uffe2\uff80\uff89+\uffe2\uff80\uff89polyphenol)\uffe2\uff80\uff90to\uffe2\uff80\uff90N ratio. N2O emissions increased after the addition of residues, and increased further (up to 128%) following the combined application of inorganic fertiliser and residues. Fertiliser\uffe2\uff80\uff90derived 15N\uffe2\uff80\uff90N2O was <1.4% of the total 14+15N\uffe2\uff80\uff90N2O emission and <0.01% of the applied 15N\uffe2\uff80\uff90NO3\uffe2\uff80\uff93. Enhanced N2O emissions following the application of residues and the fertiliser\uffe2\uff80\uff90N values were positively correlated with the C:N ratio of the residue. Thus, combining organic\uffe2\uff80\uff90 and inorganic\uffe2\uff80\uff90N immobilised a significant proportion of the inorganic N with little increase in N2O, especially in low C:N ratio residues.
CONCLUSIONSThe results demonstrate that whilst there is potential for N2O emissions to be controlled by combining weed residues and inorganic fertilisers, this is not easy to achieve as the magnitude and direction of interactions vary between different species due to their varying substrate qualities. Copyright \uffc2\uffa9 2012 John Wiley & Sons, Ltd.
", "keywords": ["2. Zero hunger", "Nitrogen", "Chemistry", " Analytical", "Nitrous Oxide", "04 agricultural and veterinary sciences", "15. Life on land", "Plants", "01 natural sciences", "6. Clean water", "Biochemical Research Methods", "0104 chemical sciences", "Soil", "13. Climate action", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Fertilizers", "Spectroscopy", "Environmental Monitoring"]}, "links": [{"href": "https://doi.org/10.1002/rcm.6254"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Rapid%20Communications%20in%20Mass%20Spectrometry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/rcm.6254", "name": "item", "description": "10.1002/rcm.6254", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/rcm.6254"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-09-10T00:00:00Z"}}, {"id": "10.1007/s00442-012-2360-6", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:34Z", "type": "Journal Article", "created": "2012-05-21", "title": "Consequences Of Exclusion Of Precipitation On Microorganisms And Microbial Consumers In Montane Tropical Rainforests", "description": "The structure and functioning of decomposer systems heavily relies on soil moisture. However, this has been primarily studied in temperate ecosystems; little is known about how soil moisture affects the microfaunal food web in tropical regions. This lack of knowledge is surprising, since the microfaunal food web controls major ecosystem processes. To evaluate the role of precipitation in the structure of soil food web components (i.e., microorganisms and testate amoebae), we excluded water input by rain in montane rainforests at different altitudes in Ecuador. Rain exclusion strongly reduced microbial biomass and respiration by about 50\u00a0%, and fungal biomass by 23\u00a0%. In testate amoebae, rain exclusion decreased the density of live cells by 91\u00a0% and caused a shift in species composition at each of the altitudes studied, with ergosterol concentrations, microbial biomass, and water content explaining 25\u00a0% of the variation in species data. The results document that reduced precipitation negatively affects soil microorganisms, but that the response of testate amoebae markedly exceeds that of bacteria and fungi. This suggests that, in addition to food, low precipitation directly affects the community structure of testate amoebae, with the effect being more pronounced at lower altitudes. Overall, the results show that microorganisms and testate amoebae rapidly respond to a reduction in precipitation, with testate amoebae-representatives of higher trophic levels-being more sensitive. The results imply that precipitation and soil moisture in tropical rainforests are the main factors regulating decomposition and nutrient turnover.", "keywords": ["2. Zero hunger", "0106 biological sciences", "Tropical Climate", "Food Chain", "Rain", "Water", "15. Life on land", "01 natural sciences", "Trees", "Soil", "13. Climate action", "Community ecology - Original research", "Biomass", "Ecuador", "Amoeba", "Ecology", " Evolution", " Behavior and Systematics", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1007/s00442-012-2360-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-012-2360-6", "name": "item", "description": "10.1007/s00442-012-2360-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-012-2360-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-05-22T00:00:00Z"}}, {"id": "10.1007/s00216-022-03943-6", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:27Z", "type": "Journal Article", "created": "2022-02-09", "title": "Systematic identification of trimethoprim metabolites in lettuce", "description": "AbstractAntibiotics are some of the most widely used drugs. Their release in the environment is of great concern since their consumption is a major factor for antibiotic resistance, one of the most important threats to human health. Their occurrence and fate in agricultural systems have been extensively investigated in recent years. Yet whilst their biotic and abiotic degradation pathways have been thoroughly researched, their biotransformation pathways in plants are less understood, such as in case of trimethoprim. Although trimethoprim has been reported in the environment, its fate in higher plants still remains unknown. A bench-scale experiment was performed and 30 trimethoprim metabolites were identified in lettuce (Lactuca sativa L.), of which 5 belong to phase I and 25 to phase II. Data mining yielded a list of 1018 ions as possible metabolite candidates, which was filtered to a final list of 87 candidates. Molecular structures were assigned for 19 compounds, including 14 TMP metabolites reported for the first time. Alongside well-known biotransformation pathways in plants, additional novel pathways were suggested, namely, conjugation with sesquiterpene lactones, and abscisic acid as a part of phase II of plant metabolism. The results obtained offer insight into the variety of phase II conjugates and may serve as a guideline for studying the metabolization of other chemicals that share a similar molecular structure or functional groups with trimethoprim. Finally, the toxicity and potential contribution of the identified metabolites to the selective pressure on antibiotic resistance genes and bacterial communities via residual antimicrobial activity were evaluated.
", "keywords": ["2. Zero hunger", "High-resolution mass spectrometry", "Phytochemicals", "0211 other engineering and technologies", "02 engineering and technology", "01 natural sciences", "Trimethoprim", "Anti-Bacterial Agents", "3. Good health", "Conjugates", "Antibiotics", "Non-target screening", "Humans", "Plant metabolites", "Biotransformation", "Research Paper", "Lactuca", "0105 earth and related environmental sciences"], "contacts": [{"organization": "Tadi\u0107, \u0110or\u0111e, Gramblicka, Michal, Mistrik, Robert, Bayona, Josep Maria,", "roles": ["creator"]}]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1007/s00216-022-03943-6.pdf"}, {"href": "https://doi.org/10.1007/s00216-022-03943-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Analytical%20and%20Bioanalytical%20Chemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00216-022-03943-6", "name": "item", "description": "10.1007/s00216-022-03943-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00216-022-03943-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-02-09T00:00:00Z"}}, {"id": "10.1007/s00248-024-02363-6", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-19T16:14:28Z", "type": "Journal Article", "created": "2024-03-01", "title": "The Feather Moss Hylocomium splendens Affects the Transcriptional Profile of a Symbiotic Cyanobacterium in Relation to Acquisition and Turnover of Key Nutrients", "description": "AbstractMoss-cyanobacteria symbioses were proposed to be based on nutrient exchange, with hosts providing C and S while bacteria provide N, but we still lack understanding of the underlying molecular mechanisms of their interactions. We investigated how contact between the ubiquitous moss Hylocomium splendens and its cyanobiont affects nutrient-related gene expression of both partners. We isolated a cyanobacterium from H. splendens and co-incubated it with washed H. splendens shoots. Cyanobacterium and moss were also incubated separately. After 1\uffc2\uffa0week, we performed acetylene reduction assays to estimate N2 fixation and RNAseq to evaluate metatranscriptomes. Genes related to N2 fixation and the biosynthesis of several amino acids were up-regulated in the cyanobiont when hosted by the moss. However, S-uptake and the biosynthesis of the S-containing amino acids methionine and cysteine were down-regulated in the cyanobiont while the degradation of selenocysteine was up-regulated. In contrast, the number of differentially expressed genes in the moss was much lower, and almost no transcripts related to nutrient metabolism were affected. It is possible that, at least during the early stage of this symbiosis, the cyanobiont receives few if any nutrients from the host in return for N, suggesting that moss\uffe2\uff80\uff93cyanobacteria symbioses encompass relationships that are more plastic than a constant mutualist flow of nutrients.Intestinal protozoa infections present a major public health challenge, particularly in areas with poor sanitation and limited access to clean water. Effective diagnostic methods are critical, yet traditional microscopy, though widely used for its simplicity, lacks the sensitivity and specificity of modern techniques like real-time Polymerase Chain Reaction (qPCR), making the latter a more effective tool for monitoring and assessing the burden of intestinal protozoa diseases. In this study, we implemented two duplex qPCR assays to detect Entamoeba dispar\uffe2\uff80\uff89+\uffe2\uff80\uff89Entamoeba histolytica and Cryptosporidium spp.\uffe2\uff80\uff89+\uffe2\uff80\uff89Chilomastix mesnili, along with singleplex assays for Giardia duodenalis and Blastocystis spp., using a 10 \uffc2\uffb5L reaction volume. This marks the first molecular detection of Chilomastix mesnili by qPCR, enhancing diagnostic precision. Using these, we analyzed stool samples from 70 patients on Pemba Island, Tanzania, before and 54 samples after treatment with 20, 25, or 30\uffc2\uffa0mg of emodepside or placebo, aiming to assess protozoa prevalence for this region and emodepside\uffe2\uff80\uff99s potential antiprotozoal effects. Our qPCR reliably detected protozoa in 74.4% of samples, with Entamoeba histolytica and Entamoeba dispar in 31.4% of cases. Notably, one-third of these infections were caused by Entamoeba histolytica. No significant reduction in protozoa was observed after emodepside treatment compared to placebo. The study highlights the utility of qPCR in providing species-level differentiation and improving the speed and cost-effectiveness of testing. The high prevalence of protozoa in this region underscores the need for continued monitoring and control efforts, though emodepside was not effective against protozoa infections.