{"type": "FeatureCollection", "features": [{"id": "10.1029/2020wr027282", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:42Z", "type": "Journal Article", "created": "2020-07-17", "title": "The Stream Length Duration Curve: A Tool for Characterizing the Time Variability of the Flowing Stream Length", "description": "Abstract<p>In spite of the importance of stream network dynamics for hydrology, ecology, and biogeochemistry, there is limited availability of analytical tools suitable for characterizing the temporal variability of the active fraction of river networks. To fill this gap, we introduce the concept of Stream Length Duration Curve (SLDC), the inverse of the exceedance probability of the total length of active streams. SLDCs summarize efficiently the effect of hydrological variability on the length of the flowing streams under a variety of settings. A set of stochastic network models is developed to link the features of the local hydrological status of the network nodes with the shape of the SLDC. We show that the mean network length is dictated by the mean persistency of the nodes, whereas the shape of the SLDC is driven by the spatial distribution of the local persistencies and their network\uffe2\uff80\uff90scale spatial correlation. Ten field surveys performed in 2018 were used to estimate the empirical SLDC of the Valfredda river (Italy), which was found to be steep and regular\uffe2\uff80\uff94indicating a pronounced sensitivity of the active stream length to the underlying hydrological conditions. Available observations also suggest that the activation of temporary reaches during network expansion is hierarchical, from the most to the least persistent stretches. Under these circumstances, the SLDC corresponds to the spatial Cumulative Distribution Function of the nodes persistencies. The study provides a sound theoretical basis for the analyses of network dynamics in temporary rivers.</p>", "keywords": ["0208 environmental biotechnology", "0207 environmental engineering", "02 engineering and technology", "Research Articles"]}, "links": [{"href": "https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2020WR027282"}, {"href": "https://doi.org/10.1029/2020wr027282"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Water%20Resources%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2020wr027282", "name": "item", "description": "10.1029/2020wr027282", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2020wr027282"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-08-01T00:00:00Z"}}, {"id": "10.1029/2021jg006688", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:43Z", "type": "Journal Article", "created": "2022-06-11", "title": "Bidirectional Exchange of Biogenic Volatile Organic Compounds in Subarctic Heath Mesocosms During Autumn Climate Scenarios", "description": "Abstract<p>Biogenic volatile organic compound (BVOC) flux dynamics during the subarctic autumn are largely unexplored and have been considered insignificant due to the relatively low biological activity expected during autumn. Here, we exposed subarctic heath ecosystems to predicted future autumn climate scenarios (ambient, warming, and colder, dark conditions), changes in light availability, and flooding, to mimic the more extreme rainfall or snowmelt events expected in the future. We used climate chambers to measure the net ecosystem fluxes and bidirectional exchange of BVOCs from intact heath mesocosms using a dynamic enclosure technique coupled to a proton\uffe2\uff80\uff90transfer\uffe2\uff80\uff90reaction time\uffe2\uff80\uff90of\uffe2\uff80\uff90flight mass spectrometer (PTR\uffe2\uff80\uff93ToF\uffe2\uff80\uff93MS). We focused on six BVOCs (methanol, acetic acid, acetaldehyde, acetone, isoprene, and monoterpenes) that were among the most dominant and that were previously identified in arctic tundra ecosystems. Warming increased ecosystem respiration and resulted in either net BVOC release or increased uptake compared to the ambient scenario. None of the targeted BVOCs showed net release in the cold and dark scenario. Acetic acid exhibited significantly lower net uptake in the cold and dark scenario than in the ambient scenario, which suggests reduced microbial activity. Flooding was characterized by net uptake of the targeted BVOCs and overruled any temperature effects conferred by the climate scenarios. Monoterpenes were mainly taken up by the mesocosms and their fluxes were not affected by the climate scenarios or flooding. This study shows that although autumn BVOC fluxes on a subarctic heath are generally low, changes in future climate may strongly modify them.</p>", "keywords": ["LITTER", "volatile organic compound", "FLUXES", "flooding", "Arctic", "Flooding", "Autumn", "11. Sustainability", "arctic", "autumn", "Ecosystem-atmosphere interactions", "Global change", "global change", "EMISSIONS", "MICROBIAL ACTIVITY", "ecosystem-atmosphere interactions", "Volatile organic compound", "15. Life on land", "FOREST", "TUNDRA", "SOIL", "NITROGEN", "SUMMER", "13. Climate action", "WINTER", "Research Article"]}, "links": [{"href": "https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2021JG006688"}, {"href": "https://doi.org/10.1029/2021jg006688"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Geophysical%20Research%3A%20Biogeosciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2021jg006688", "name": "item", "description": "10.1029/2021jg006688", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2021jg006688"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-06-01T00:00:00Z"}}, {"id": "10.1029/2021ms002730", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:43Z", "type": "Journal Article", "created": "2022-02-17", "title": "Characterising the response of vegetation cover to water limitation in Africa using geostationary satellites", "description": "Abstract<p>Hydrological interactions between vegetation, soil, and topography are complex, and heterogeneous in semi\uffe2\uff80\uff90arid landscapes. This along with data scarcity poses challenges for large\uffe2\uff80\uff90scale modeling of vegetation\uffe2\uff80\uff90water interactions. Here, we exploit metrics derived from daily Meteosat data over Africa at ca. 5\uffc2\uffa0km spatial resolution for ecohydrological analysis. Their spatial patterns are based on Fractional Vegetation Cover (FVC) time series and emphasize limiting conditions of the seasonal wet to dry transition: the minimum and maximum FVC of temporal record, the FVC decay rate and the FVC integral over the decay period. We investigate the relevance of these metrics for large scale ecohydrological studies by assessing their co\uffe2\uff80\uff90variation with soil moisture, and with topographic, soil, and vegetation factors. Consistent with our initial hypothesis, FVC minimum and maximum increase with soil moisture, while the FVC integral and decay rate peak at intermediate soil moisture. We find evidence for the relevance of topographic moisture variations in arid regions, which, counter\uffe2\uff80\uff90intuitively, is detectable in the maximum but not in the minimum FVC. We find no clear evidence for wide\uffe2\uff80\uff90spread occurrence of the \uffe2\uff80\uff9cinverse texture effect\uffe2\uff80\uff9d on FVC. The FVC integral over the decay period correlates with independent data sets of plant water storage capacity or rooting depth while correlations increase with aridity. In arid regions, the FVC decay rate decreases with canopy height and tree cover fraction as expected for ecosystems with a more conservative water\uffe2\uff80\uff90use strategy. Thus, our observation\uffe2\uff80\uff90based products have large potential for better understanding complex vegetation\uffe2\uff80\uff90water interactions from regional to continental scales.</p>", "keywords": ["Physical geography", "GROUNDWATER-DEPENDENT ECOSYSTEMS", "water limitation", "GC1-1581", "geostationary", "SOIL-MOISTURE", "Oceanography", "01 natural sciences", "ecohydrology", "ROOTING DEPTH", "ACTIVE-ROLE", "WOODY COVER", "0105 earth and related environmental sciences", "fractional vegetation cover", "HYDROLOGIC PROCESSES", "15. Life on land", "6. Clean water", "GB3-5030", "MODEL", "CLIMATE", "13. Climate action", "Earth and Environmental Sciences", "PRECIPITATION", "Africa", "PATTERNS", "Research Article"]}, "links": [{"href": "https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2021MS002730"}, {"href": "https://doi.org/10.1029/2021ms002730"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Advances%20in%20Modeling%20Earth%20Systems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2021ms002730", "name": "item", "description": "10.1029/2021ms002730", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2021ms002730"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-25T00:00:00Z"}}, {"id": "10.1029/2022gb007489", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:43Z", "type": "Journal Article", "created": "2022-11-09", "title": "Mineral Soils Are an Important Intermediate Storage Pool of Black Carbon in Fennoscandian Boreal Forests", "description": "Abstract<p>Approximately 40% of earth's carbon (C) stored in land vegetation and soil is within the boreal region. This large C pool is subjected to substantial removals and transformations during periodic wildfire. Fire\uffe2\uff80\uff90altered C, commonly known as pyrogenic carbon (PyC), plays a significant role in forest ecosystem functioning and composes a considerable fraction of C transport to limnic and oceanic sediments. While PyC stores are beginning to be quantified globally, knowledge is lacking regarding the drivers of their production and transport across ecosystems. This study used the chemo\uffe2\uff80\uff90thermal oxidation at 375\uffc2\uffb0C (CTO\uffe2\uff80\uff90375) method to isolate a particularly refractory subset of PyC compounds, here called black carbon (BC), finding an average increase of 11.6\uffc2\uffa0g BC m\uffe2\uff88\uff922 at 1\uffc2\uffa0year postfire in 50 separate wildfires occurring in Sweden during 2018. These increases could not be linked to proposed drivers, however BC storage in 50 additional nearby unburnt soils related strongly to soil mass while its proportion of the larger C pool related negatively to soil C:N. Fire approximately doubled BC stocks in the mineral layer but had no significant effect on BC in the organic layer where it was likely produced. Suppressed decomposition rates and low heating during fire in mineral subsoil relative to upper layers suggests potential removals of the doubled mineral layer BC are more likely transported out of the soil system than degraded in situ. Therefore, mineral soils are suggested to be an important storage pool for BC that can buffer short\uffe2\uff80\uff90term (production in fire) and long\uffe2\uff80\uff90term (cross\uffe2\uff80\uff90ecosystem transport) BC cycling.</p", "keywords": ["Ekologi", "Ecology", "mineral soil", "Soil Science", "Geokemi", "15. Life on land", "black carbon", "Markvetenskap", "01 natural sciences", "pyrogenic carbon", "fire severity", "Geochemistry", "13. Climate action", "carbon cycle", "boreal wildfire", "Research Article", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1029/2022gb007489"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Biogeochemical%20Cycles", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2022gb007489", "name": "item", "description": "10.1029/2022gb007489", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2022gb007489"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-11-01T00:00:00Z"}}, {"id": "10.1029/2022je007190", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:43Z", "type": "Journal Article", "created": "2022-01-25", "title": "InSight Pressure Data Recalibration, and Its Application to the Study of Long-Term Pressure Changes on Mars", "description": "Abstract<p>Observations of the South Polar Residual Cap suggest a possible erosion of the cap, leading to an increase of the global mass of the atmosphere. We test this assumption by making the first comparison between Viking 1 and InSight surface pressure data, which were recorded 40\uffc2\uffa0years apart. Such a comparison also allows us to determine changes in the dynamics of the seasonal ice caps between these two periods. To do so, we first had to recalibrate the InSight pressure data because of their unexpected sensitivity to the sensor temperature. Then, we had to design a procedure to compare distant pressure measurements. We propose two surface pressure interpolation methods at the local and global scale to do the comparison. The comparison of Viking and InSight seasonal surface pressure variations does not show changes larger than \uffc2\uffb18\uffc2\uffa0Pa in the CO2 cycle. Such conclusions are supported by an analysis of Mars Science Laboratory (MSL) pressure data. Further comparisons with images of the south seasonal cap taken by the Viking 2 orbiter and MARCI camera do not display significant changes in the dynamics of this cap over a 40\uffc2\uffa0year period. Only a possible larger extension of the North Cap after the global storm of MY 34 is observed, but the physical mechanisms behind this anomaly are not well determined. Finally, the first comparison of MSL and InSight pressure data suggests a pressure deficit at Gale crater during southern summer, possibly resulting from a large presence of dust suspended within the crater.</p>", "keywords": ["Atmospheric sciences", "550", "Astronomy", "Atmosphere (unit)", "FOS: Mechanical engineering", "Library science", "Oceanography", "01 natural sciences", "CO<SUB>2</SUB> ice", "pressure", "Mars Exploration Program", "Engineering", "Surface pressure", "Storm", "Martian Climate", "Space Suit Design and Ergonomics for EVA", "Martian Atmosphere", "Earth and Planetary Astrophysics (astro-ph.EP)", "Climatology", "Global and Planetary Change", "Geography", "Martian Surface", "Physics", "Geology", "Impact crater", "Condensed matter physics", "Anomaly (physics)", "World Wide Web", "Algorithm", "Satellite Observations", "Residual", "Physical Sciences", "Exploration and Study of Mars", "Astrophysics - Instrumentation and Methods for Astrophysics", "Research Article", "FOS: Physical sciences", "Mars", "Aerospace Engineering", "Pressure gradient", "Environmental science", "[SDU] Sciences of the Universe [physics]", "atmospheric mass", "Meteorology", "Orbiter", "0103 physical sciences", "Instrumentation and Methods for Astrophysics (astro-ph.IM)", "Formation and Evolution of the Solar System", "0105 earth and related environmental sciences", "Pressure system", "CO 2 ice", "Astronomy and Astrophysics", "FOS: Earth and related environmental sciences", "Astrobiology", "Computer science", "Physics and Astronomy", "[SDU]Sciences of the Universe [physics]", "13. Climate action", "Global Methane Emissions and Impacts", "Environmental Science", "cap sublimation", "Water on Mars", "Astrophysics - Earth and Planetary Astrophysics"]}, "links": [{"href": "https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2022JE007190"}, {"href": "https://doi.org/10.1029/2022je007190"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Geophysical%20Research%3A%20Planets", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2022je007190", "name": "item", "description": "10.1029/2022je007190", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2022je007190"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-25T00:00:00Z"}}, {"id": "10.1016/j.ultsonch.2021.105663", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:23Z", "type": "Journal Article", "created": "2021-07-08", "title": "Challenges of numerical simulations of cavitation reactors for water treatment - An example of flow simulation inside a cavitating microchannel.", "description": "The research on the potential of cavitation exploitation is currently an extremely interesting topic. To reduce the costs and time of the cavitation reactor optimization, nowadays, experimental optimization is supplemented and even replaced using computational fluid dynamics (CFD). This is a very inviting opportunity for many developers, yet we find that all too often researchers with non-engineering background treat this 'new' tool too simplistic, what leads to many misinterpretations and consequent poor engineering. The present paper serves as an example of how complex the flow features, even in the very simplest geometry, can be, and how much effort needs to be put into details of numerical simulation to set a good starting point for further optimization of cavitation reactors. Finally, it provides guidelines for the researchers, who are not experts in computational fluid dynamics, to obtain reliable and repeatable results of cavitation simulations.", "keywords": ["Venturi", "QC221-246", "computational fluid dynamics", "Numerical simulation", "Computational fluid dynamics", "cavitation", " computational fluid dynamics", " numerical simulation", " venturi", " microchannel", "kavitacija", "venturijeve cevi", "0404 agricultural biotechnology", "cavitation", "microchannel", "info:eu-repo/classification/udc/532.528:519.6:004.942", "Original Research Article", "numeri\u010dna simulacija", "QD1-999", "Venturi channel", "kavitacija", " ra\u010dunska dinamika fluidov", " numeri\u010dna simulacija", " venturijeve cevi", " mikrokanal", "Cavitation", "Acoustics. Sound", "ra\u010dunska dinamika fluidov", "04 agricultural and veterinary sciences", "6. Clean water", "mikrokanal", "Chemistry", "numerical simulation", "info:eu-repo/classification/udc/532", "0405 other agricultural sciences"], "contacts": [{"organization": "Pipp, Peter, Ho\u010devar, Marko, Dular, Matev\u017e,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.ultsonch.2021.105663"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ultrasonics%20Sonochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.ultsonch.2021.105663", "name": "item", "description": "10.1016/j.ultsonch.2021.105663", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.ultsonch.2021.105663"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-09-01T00:00:00Z"}}, {"id": "10.1016/j.ultsonch.2021.105706", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:23Z", "type": "Journal Article", "created": "2021-08-12", "title": "Liposome destruction by a collapsing cavitation microbubble: A numerical study.", "description": "Hydrodynamic cavitation poses as a promising new method for wastewater treatment as it has been shown to be able to eradicate bacteria, inactivate viruses, and destroy other biological structures, such as liposomes. Although engineers are already commercializing devices that employ cavitation, we are still not able to answer the fundamental question: What exactly are the damaging mechanisms of hydrodynamic cavitation in various applications? In this light, the present paper numerically addresses the interaction between a single cavitation microbubble and a nearby lipid vesicle of a similar size. A coupled fluid-structure interaction model is employed, from which three critical modes of vesicle deformation are identified and temporally placed in relation to their corresponding driving mechanisms: (a) unilateral stretching at the waist of the liposome during the first bubble collapse and subsequent shock wave propagation, (b) local wrinkling at the tip until the bubble rebounds, and (c) bilateral stretching at the tip of the liposome during the phase of a second bubble contraction. Here, unilateral and bilateral stretching refer to the local in-plane extension of the bilayer in one and both principal directions, respectively. Results are discussed with respect to critical dimensionless distance for vesicle poration and rupture. Liposomes with initially equilibrated envelopes are not expected to be structurally compromised in cases with \u03b4>1.0, when a nearby collapsing bubble is not in their direct contact. However, the critical dimensionless distance for the case of an envelope with pre-existing pores is identified at \u03b4=1.9. Additionally, the influence of liposome-bubble size ratio is addressed, from which a higher potential of larger bubbles for causing stretching-induced liposome destruction can be identified.", "keywords": ["bubble dynamics", "lipidni vezniki", "dinamika mehur\u010dkov", "bubble dynamics", " cavitation", " fluid-structure interaction", " shock wave emission", " giant lipid vesicles", " DOPC", "QC221-246", "fluid-structure interaction", "shock wave emission", "Bubble dynamics", "emisija udarnih valov", "kavitacija", "0404 agricultural biotechnology", "cavitation", "Fluid-structure interaction", "giant lipid vesicles", "Shock wave emission", "Original Research Article", "QD1-999", "Cavitation", "Giant lipid vesicles", "Microbubbles", "info:eu-repo/classification/udc/532.528:577.115.5", "Acoustics. Sound", "dinamika mehur\u010dkov", " kavitacija", " interakcija fluid-struktura", " emisija udarnih valov", " lipidni vezniki", " DOPC", "04 agricultural and veterinary sciences", "6. Clean water", "Chemistry", "info:eu-repo/classification/udc/532", "DOPC", "Liposomes", "Viruses", "Hydrodynamics", "interakcija fluid-struktura", "0405 other agricultural sciences"], "contacts": [{"organization": "Zevnik, Jure, Dular, Matev\u017e,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.ultsonch.2021.105706"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ultrasonics%20Sonochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.ultsonch.2021.105706", "name": "item", "description": "10.1016/j.ultsonch.2021.105706", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.ultsonch.2021.105706"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-01T00:00:00Z"}}, {"id": "10.1016/j.ultsonch.2025.107222", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:24Z", "type": "Journal Article", "created": "2025-01-05", "title": "The accurate determination of Perfluorooctane sulfonic acid (PFOS) removal efficiency by integrated-sonochemical system", "description": "Perfluorooctanesulfonic acid (PFOS) is one of the most investigated Per- and polyfluoroalkyl substances (PFAS) for being the strongest compound to eliminate and having adverse health concerns. In this work, we have conducted the sonochemical treatment of PFOS simulated water under high (500\u00a0kHz) and low (22\u00a0kHz) frequencies while monitoring the operational parameters via an integrated sonochemical system. The integrated advanced sonochemical system includes software to monitor treatment power, solution temperature and frequency while allowing distinctive control of the reaction conditions. Considering the lack of calorimetric measurements in earlier studies and the difficulty in achieving comparative outcomes, precise calorimetric measurements and determination of electrical energy per order (E(EO)) were performed in this study. The complete PFOS removal was achieved under 500\u00a0kHz frequency with optimum parameters including initial pollutant concentration (5\u00a0mg/L), ultrasound power density (400\u00a0W/L) and solution temperature (25\u00a0\u00b0C) within 180\u00a0min of treatment. The removal and mineralization extents (defluorination) were determined by ultra-high performance liquid chromatography\u2013mass spectrometry (UPLC-MS/MS) and ion-chromatography (IC) analysis. Under optimum conditions, 100\u00a0% removal and 99\u00a0% mineralization were achieved. The rate constant (k) ranged from 0.011 to 0.031 [Formula: see text] (first-order reaction), which increased with the increase in the power density. While the solution temperature did not significantly affect the PFOS removal efficiency, the initial concentration was found to have a prominent effect on the reaction rate constant. However, experiments at low frequency (22\u00a0kHz) showed negligible removal efficiency. The specific energy requirement for reaching 90\u00a0% removal while considering the power consumed by the ultrasonic system from the main electrical source was determined to be 700 [Formula: see text] , which is much lower than other reported work under similar conditions. This work will be useful for both laboratory and industrial upscaling while acting as a benchmark reference to follow.", "keywords": ["[SDE] Environmental Sciences", "EEO", "PFAS", "Acoustics. Sound", "QC221-246", "Frequency", "lMineralization", "Remova", "Sonochemical", "Chemistry", "PFOS", "[SDU.STU] Sciences of the Universe [physics]/Earth Sciences", "Original Research Article", "Removal", "QD1-999"]}, "links": [{"href": "https://doi.org/10.1016/j.ultsonch.2025.107222"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ultrasonics%20Sonochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.ultsonch.2025.107222", "name": "item", "description": "10.1016/j.ultsonch.2025.107222", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.ultsonch.2025.107222"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "10.1098/rspa.2017.0178", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:31Z", "type": "Journal Article", "created": "2017-11-22", "title": "Fluid flow in porous media using image-based modelling to parametrize Richards' equation", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The parameters in Richards' equation are usually calculated from experimentally measured values of the soil\u2013water characteristic curve and saturated hydraulic conductivity. The complex pore structures that often occur in porous media complicate such parametrization due to hysteresis between wetting and drying and the effects of tortuosity. Rather than estimate the parameters in Richards' equation from these indirect measurements, image-based modelling is used to investigate the relationship between the pore structure and the parameters. A three-dimensional, X-ray computed tomography image stack of a soil sample with voxel resolution of 6\u2009\u03bcm has been used to create a computational mesh. The Cahn\u2013Hilliard\u2013Stokes equations for two-fluid flow, in this case water and air, were applied to this mesh and solved using the finite-element method in COMSOL Multiphysics. The upscaled parameters in Richards' equation are then obtained via homogenization. The effect on the soil\u2013water retention curve due to three different contact angles, 0\u00b0, 20\u00b0 and 60\u00b0, was also investigated. The results show that the pore structure affects the properties of the flow on the large scale, and different contact angles can change the parameters for Richards' equation.</p></article>", "keywords": ["0301 basic medicine", "Richards\u2019 equation", "330", "EP/M020355/1", "QH301 Biology", "530", "QH301", "03 medical and health sciences", "porous media", "646809DIMR", "Journal Article", "BB/L025620/1", "BB/J00868/1", "NE/L00237/1", "Research Articles", "0303 health sciences", "Civil_env_eng", "Natural Environment Research Council (NERC)", "621", "6. Clean water", "004", "620", "3. Good health", "image-based modelling", "Richards' equation", "Engineering and Physical Sciences Research Council (EPSRC)", "Biotechnology and Biological Sciences Research Council (BBSRC)", "BB/P004180/1", "BB/L025825/1", "European Research Council"]}, "links": [{"href": "https://repository.uwl.ac.uk/id/eprint/4979/1/20170178.full.pdf"}, {"href": "https://eprints.soton.ac.uk/415076/1/ImageBasedRichardsPRST.pdf"}, {"href": "https://eprints.soton.ac.uk/415076/2/SupplementaryFigure.pdf"}, {"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rspa.2017.0178"}, {"href": "https://doi.org/10.1098/rspa.2017.0178"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20Royal%20Society%20A%3A%20Mathematical%2C%20Physical%20and%20Engineering%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rspa.2017.0178", "name": "item", "description": "10.1098/rspa.2017.0178", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rspa.2017.0178"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-11-01T00:00:00Z"}}, {"id": "10.1093/femsec/fiae152", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:24Z", "type": "Journal Article", "created": "2024-11-19", "title": "A respiro-fermentative strategy to survive nanoxia in Acidobacterium capsulatum", "description": "Abstract                <p>Microbial soil habitats are characterized by rapid shifts in substrate and nutrient availabilities, as well as chemical and physical parameters. One such parameter that can vary in soil is oxygen; thus, microbial survival is dependent on adaptation to this substrate. To better understand the metabolic abilities and adaptive strategies to oxygen-deprived environments, we combined genomics with transcriptomics of a model organism, Acidobacterium capsulatum, to explore the effect of decreasing, environmentally relevant oxygen concentrations. The decrease from 10 to 0.1\uffc2\uffa0\uffc2\uffb5M oxygen (3.6 to 0.036 pO2% present atmospheric level, respectively) caused the upregulation of the transcription of genes involved in signal transduction mechanisms, energy production and conversion and secondary metabolites biosynthesis, transport, and catabolism based on clusters of orthologous group categories. Contrary to established observations for aerobic metabolism, key genes in oxidative stress response were significantly upregulated at lower oxygen concentrations, presumably due to an NADH/NAD+ redox ratio imbalance as the cells transitioned into nanoxia. Furthermore, A. capsulatum adapted to nanoxia by inducing a respiro-fermentative metabolism and rerouting fluxes of its central carbon and energy pathways to adapt to high NADH/NAD+ redox ratios. Our results reveal physiological features and metabolic capabilities that allowed A. capsulatum to adapt to oxygen-limited conditions, which could expand into other environmentally relevant soil strains.</p", "keywords": ["0301 basic medicine", "106022 Mikrobiologie", "0303 health sciences", "Acidobacteriota", "NADH imbalances", "microaerobic respiration", "Gene Expression Regulation", " Bacterial", "Adaptation", " Physiological", "oxygen limitation", "Acidobacteria", "Oxygen", "Oxidative Stress", "03 medical and health sciences", "106026 \u00d6kosystemforschung", "Fermentation", "106022 Microbiology", "106026 Ecosystem research", "fermentation", "transcriptome", "Oxidation-Reduction", "Soil Microbiology", "Research Article"]}, "links": [{"href": "https://doi.org/10.1093/femsec/fiae152"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/FEMS%20Microbiology%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/femsec/fiae152", "name": "item", "description": "10.1093/femsec/fiae152", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/femsec/fiae152"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-11-18T00:00:00Z"}}, {"id": "10.1029/2017wr022067", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:41Z", "type": "Journal Article", "created": "2019-01-04", "title": "14C\u2010Free Carbon Is a Major Contributor to Cellular Biomass in Geochemically Distinct Groundwater of Shallow Sedimentary Bedrock Aquifers", "description": "Abstract<p>Despite the global significance of the subsurface biosphere, the degree to which it depends on surface organic carbon (OC) is still poorly understood. Here, we compare stable and radiogenic carbon isotope compositions of microbial phospholipid fatty acids (PLFAs) with those of in situ potential microbial C sources to assess the major C sources for subsurface microorganisms in biogeochemical distinct shallow aquifers (Critical Zone Exploratory, Thuringia Germany). Despite the presence of younger OC, the microbes assimilated 14C\uffe2\uff80\uff90free OC to varying degrees; ~31% in groundwater within the oxic zone, ~47% in an iron reduction zone, and ~70% in a sulfate reduction/anammox zone. The persistence of trace amounts of mature and partially biodegraded hydrocarbons suggested that autochthonous petroleum\uffe2\uff80\uff90derived hydrocarbons were a potential 14C\uffe2\uff80\uff90free C source for heterotrophs in the oxic zone. In this zone, \uffce\uff9414C values of dissolved inorganic carbon (\uffe2\uff88\uff92366\uffc2\uffa0\uffc2\uffb1\uffc2\uffa018\uffe2\uff80\uffb0) and 11MeC16:0 (\uffe2\uff88\uff92283\uffc2\uffa0\uffc2\uffb1\uffc2\uffa032\uffe2\uff80\uffb0), an important component in autotrophic nitrite oxidizers, were similar enough to indicate that autotrophy is an important additional C fixation pathway. In anoxic zones, methane as an important C source was unlikely since the 13C\uffe2\uff80\uff90fractionations between the PLFAs and CH4 were inconsistent with kinetic isotope effects associated with methanotrophy. In the sulfate reduction/anammox zone, the strong 14C\uffe2\uff80\uff90depletion of 10MeC16:0 (\uffe2\uff88\uff92942\uffc2\uffa0\uffc2\uffb1\uffc2\uffa022\uffe2\uff80\uffb0), a PLFA common in sulfate reducers, indicated that those bacteria were likely to play a critical part in 14C\uffe2\uff80\uff90free sedimentary OC cycling. Results indicated that the 14C\uffe2\uff80\uff90content of microbial biomass in shallow sedimentary aquifers results from complex interactions between abundance and bioavailability of naturally occurring OC, hydrogeology, and specific microbial metabolisms.</p", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "assimilation", "Environmental Engineering", "Environmental engineering", "Geology", "subsurface", "15. Life on land", "Civil Engineering", "Physical Geography and Environmental Geoscience", "6. Clean water", "03 medical and health sciences", "Geochemistry", "13. Climate action", "C cycling", "Earth Sciences", "radiocarbon", "PLFA", "microbial function", "Civil engineering", "Hydrology", "Research Articles"]}, "links": [{"href": "https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2017WR022067"}, {"href": "https://escholarship.org/content/qt28c3v5mf/qt28c3v5mf.pdf"}, {"href": "https://doi.org/10.1029/2017wr022067"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Water%20Resources%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2017wr022067", "name": "item", "description": "10.1029/2017wr022067", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2017wr022067"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-03-01T00:00:00Z"}}, {"id": "10.1029/2018GB005950", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:41Z", "type": "Journal Article", "created": "2018-10-12", "title": "Soil Organic Matter Persistence as a Stochastic Process: Age and Transit Time Distributions of Carbon in Soils", "description": "<p>The question of why some types of organic matter are more persistent while others decompose quickly in soils has motivated a large amount of research in recent years. Persistence is commonly characterized as turnover or mean residence time of soil organic matter (SOM). However, turnover and residence times are ambiguous measures of persistence, because they could represent the concept of either age or transit time. To disambiguate these concepts and propose a metric to assess SOM persistence, we calculated age and transit time distributions for a wide range of soil organic carbon models. Furthermore, we show how age and transit time distributions can be obtained from a stochastic approach that takes a deterministic model of mass transfers among different pools and creates an equivalent stochastic model at the level of atoms. Using this approach we show the following: (1) Age distributions have relatively old mean values and long tails in relation to transit time distributions, suggesting that carbon stored in soils is on average much older than carbon in the release flux. (2) The difference between mean ages and mean transit times is large, with estimates of soil organic carbon persistence on the order of centuries or millennia when assessed using ages and on the order of decades when using transit or turnover times. (3) The age distribution is an appropriate metric to characterize persistence of SOM. An important implication of our analysis is that random chance is a factor that helps to explain why some organic matter persists for millennia in soil.</p>", "keywords": ["2. Zero hunger", "Aging", "time scales", "04 agricultural and veterinary sciences", "carbon storage", "15. Life on land", "Oceanography", "01 natural sciences", "soil models", "Atmospheric Sciences", "Geochemistry", "Climate change impacts and adaptation", "13. Climate action", "Geoinformatics", "Earth Sciences", "Meteorology & Atmospheric Sciences", "0401 agriculture", " forestry", " and fisheries", "soil carbon", "Climate Change Impacts and Adaptation", "Environmental Sciences", "model diagnostics", "Research Articles", "biogeochemical cycling", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2018GB005950"}, {"href": "https://escholarship.org/content/qt2sh647x7/qt2sh647x7.pdf"}, {"href": "https://doi.org/10.1029/2018GB005950"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Biogeochemical%20Cycles", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2018GB005950", "name": "item", "description": "10.1029/2018GB005950", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2018GB005950"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-10-01T00:00:00Z"}}, {"id": "10.1029/2017JD027827", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:41Z", "type": "Journal Article", "created": "2018-04-26", "title": "Fine Particle Emissions From Tropical Peat Fires Decrease Rapidly With Time Since Ignition", "description": "Abstract<p>Southeast Asia experiences frequent fires in fuel\uffe2\uff80\uff90rich tropical peatlands, leading to extreme episodes of regional haze with high concentrations of fine particulate matter (PM2.5) impacting human health. In a study published recently, the first field measurements of PM2.5 emission factors for tropical peat fires showed larger emissions than from other fuel types. Here we report even higher PM2.5 emission factors, measured at newly ignited peat fires in Malaysia, suggesting that current estimates of fine particulate emissions from peat fires may be underestimated by a factor of 3 or more. In addition, we use both field and laboratory measurements of burning peat to provide the first mechanistic explanation for the high variability in PM2.5 emission factors, demonstrating that buildup of a surface ash layer causes the emissions of PM2.5 to decrease as the peat fire progresses. This finding implies that peat fires are more hazardous (in terms of aerosol emissions) when first ignited than when still burning many days later. Varying emission factors for PM2.5 also have implications for our ability to correctly model the climate and air quality impacts downwind of the peat fires. For modelers able to implement a time\uffe2\uff80\uff90varying emission factor, we recommend an emission factor for PM2.5 from newly ignited tropical peat fires of 58\uffc2\uffa0g of PM2.5 per kilogram of dry fuel consumed (g/kg), reducing exponentially at a rate of 9%/day. If the age of the fire is unknown or only a single value may be used, we recommend an average value of 24\uffc2\uffa0g/kg.</p>", "keywords": ["5", "550", "TRACE GASES", "PM2", "PM2.5", "Social and Behavioral Sciences", "01 natural sciences", "TRANSFORM INFRARED-SPECTROSCOPY", "INDONESIA", "CARBON", "SDG 3 - Good Health and Well-being", "11. Sustainability", "Medicine and Health Sciences", "Meteorology & Atmospheric Sciences", "AUSTRALIAN VEGETATION FIRES", "Research Articles", "0105 earth and related environmental sciences", "Science & Technology", "GE", "emissions", "AIR-POLLUTION", "15. Life on land", "FOREST", "FIELD-MEASUREMENTS", "DERIVATION", "13. Climate action", "Physical Sciences", "PREMATURE MORTALITY", "peat", "FoR 0401 (Atmospheric Sciences)", "FoR 0502 (Environmental Science and Management)", "fire"]}, "links": [{"href": "https://researchonline.ljmu.ac.uk/id/eprint/9303/1/Fine%20Particle%20Emissions%20From%20Tropical%20Peat%20Fires%20Decrease%20Rapidly%20With%20Time%20Since%20Ignition..pdf"}, {"href": "https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2017JD027827"}, {"href": "https://doi.org/10.1029/2017JD027827"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Geophysical%20Research%3A%20Atmospheres", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2017JD027827", "name": "item", "description": "10.1029/2017JD027827", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2017JD027827"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-05-16T00:00:00Z"}}, {"id": "10.1029/2018je005802", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:41Z", "type": "Journal Article", "created": "2019-01-22", "title": "Geological Evidence of Planet\u2010Wide Groundwater System on Mars", "description": "Abstract<p>The scale of groundwater upwelling on Mars, as well as its relation to sedimentary systems, remains an ongoing debate. Several deep craters (basins) in the northern equatorial regions show compelling signs that large amounts of water once existed on Mars at a planet\uffe2\uff80\uff90wide scale. The presence of water\uffe2\uff80\uff90formed features, including fluvial Gilbert and sapping deltas fed by sapping valleys, constitute strong evidence of groundwater upwelling resulting in long term standing bodies of water inside the basins. Terrestrial field evidence shows that sapping valleys can occur in basalt bedrock and not only in unconsolidated sediments. A hypothesis that considers the elevation differences between the observed morphologies and the assumed basal groundwater level is presented and described as the \uffe2\uff80\uff9cdike\uffe2\uff80\uff90confined water\uffe2\uff80\uff9d model, already present on Earth and introduced for the first time in the Martian geological literature. Only the deepest basins considered in this study, those with bases deeper than \uffe2\uff88\uff924000\uffc2\uffa0m in elevation below the Mars datum, intercepted the water\uffe2\uff80\uff90saturated zone and exhibit evidence of groundwater fluctuations. The discovery of these groundwater discharge sites on a planet\uffe2\uff80\uff90wide scale strongly suggests a link between the putative Martian ocean and various configurations of sedimentary deposits that were formed as a result of groundwater fluctuations during the Hesperian period. This newly recognized evidence of water\uffe2\uff80\uff90formed features significantly increases the chance that biosignatures could be buried in the sediment. These deep basins (groundwater\uffe2\uff80\uff90fed lakes) will be of interest to future exploration missions as they might provide evidence of geological conditions suitable for life.</p>", "keywords": ["13. Climate action", "0103 physical sciences", "Gilbert Delta; Mars; groundwater; lakes; sapping valley; sedimentology.", "15. Life on land", "01 natural sciences", "Research Articles", "6. Clean water", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://ricerca.unich.it/bitstream/11564/702001/1/Salese_et_al-2019-Journal_of_Geophysical_Research__Planets-print.pdf"}, {"href": "https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2018JE005802"}, {"href": "https://doi.org/10.1029/2018je005802"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Geophysical%20Research%3A%20Planets", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2018je005802", "name": "item", "description": "10.1029/2018je005802", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2018je005802"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-02-01T00:00:00Z"}}, {"id": "10.1029/2020jd034163", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:42Z", "type": "Journal Article", "created": "2021-07-23", "title": "Upgrading Land\u2010Cover and Vegetation Seasonality in the ECMWF Coupled System: Verification With FLUXNET Sites, METEOSAT Satellite Land Surface Temperatures, and ERA5 Atmospheric Reanalysis", "description": "Abstract<p>In this study, we show that limitations in the representation of land cover and vegetation seasonality in the European Centre for Medium\uffe2\uff80\uff90Range Weather Forecasting (ECMWF) model are partially responsible for large biases (up to \uffe2\uff88\uffbc10\uffc2\uffb0C, either positive or negative depending on the region) on the simulated daily maximum land surface temperature (LST) with respect to satellite Earth Observations (EOs) products from the Land Surface Analysis Satellite Application Facility. The error patterns were coherent in offline land\uffe2\uff80\uff90surface and coupled land\uffe2\uff80\uff90atmosphere simulations, and in ECMWF's latest generation reanalysis (ERA5). Subsequently, we updated the ECMWF model's land cover characterization leveraging on state\uffe2\uff80\uff90of\uffe2\uff80\uff90the\uffe2\uff80\uff90art EOs\uffe2\uff80\uff94the European Space Agency Climate Change Initiative land cover data set and the Copernicus Global Land Services leaf area index. Additionally, we tested a clumping parameterization, introducing seasonality to the effective low vegetation coverage. The updates reduced the overall daily maximum LST bias and unbiased root\uffe2\uff80\uff90mean\uffe2\uff80\uff90squared errors. In contrast, the implemented updates had a neutral impact on daily minimum LST. Our results also highlighted the complex regional heterogeneities in the atmospheric sensitivity to land cover and vegetation changes, particularly with issues emerging over eastern Brazil and northeastern Asia. These issues called for a re\uffe2\uff80\uff90calibration of model parameters (e.g., minimum stomatal resistance, roughness length, rooting depth), along with a revision of several model assumptions (e.g., snow shading by high vegetation).</p>", "keywords": ["Atmospheric Science", "CLIMATE-CHANGE", "IMPACT", "PREDICTION", "SNOW SCHEME", "ASSIMILATION", "MODELS", "15. Life on land", "SOIL-MOISTURE", "01 natural sciences", "PREDICTABILITY", "VARIABILITY", "Geophysics", "Space and Planetary Science", "13. Climate action", "Earth and Environmental Sciences", "Earth and Planetary Sciences (miscellaneous)", "SENSITIVITY", "Research Article", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1029/2020jd034163"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Geophysical%20Research%3A%20Atmospheres", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2020jd034163", "name": "item", "description": "10.1029/2020jd034163", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2020jd034163"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-08-02T00:00:00Z"}}, {"id": "10.1029/2019wr025310", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:42Z", "type": "Journal Article", "created": "2019-11-11", "title": "A Precipitation Recycling Network to Assess Freshwater Vulnerability: Challenging the Watershed Convention", "description": "Abstract<p>Water resources and water scarcity are usually regarded as local aspects for which a watershed\uffe2\uff80\uff90based management appears adequate. However, precipitation, as a main source of freshwater, may depend on moisture supplied through land evaporation from outside the watershed. This notion of evaporation as a local \uffe2\uff80\uff9cgreen water\uffe2\uff80\uff9d supply to precipitation is typically not considered in hydrological water assessments. Here we propose the concept of a watershed precipitation recycling network, which establishes atmospheric pathways and links land surface evaporation as a moisture supply to precipitation, hence contributing to local but also remote freshwater resources. Our results show that up to 74% of summer precipitation over European watersheds depends on moisture supplied from other watersheds, which contradicts the conventional consideration of autarkic watersheds. The proposed network approach illustrates atmospheric pathways and enables the objective assessment of freshwater vulnerability and water scarcity risks under global change. The illustrated watershed interdependence emphasizes the need for global water governance to secure freshwater availability.</p>", "keywords": ["CLIMATE-CHANGE", "0207 environmental engineering", "02 engineering and technology", "MOISTURE", "15. Life on land", "01 natural sciences", "6. Clean water", "TIME", "12. Responsible consumption", "EVAPORATION", "VARIABILITY", "13. Climate action", "Earth and Environmental Sciences", "USE IMPACTS", "IRRIGATION", "11. Sustainability", "SCARCITY", "MULTIMODEL", "SATELLITE", "Research Articles", "Water Science and Technology", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2019WR025310"}, {"href": "https://doi.org/10.1029/2019wr025310"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Water%20Resources%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2019wr025310", "name": "item", "description": "10.1029/2019wr025310", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2019wr025310"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-11-01T00:00:00Z"}}, {"id": "10.1029/2020gb006719", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:17:42Z", "type": "Journal Article", "created": "2020-11-18", "title": "Stream Dissolved Organic Matter in Permafrost Regions Shows Surprising Compositional Similarities but Negative Priming and Nutrient Effects", "description": "Abstract<p>Permafrost degradation is delivering bioavailable dissolved organic matter (DOM) and inorganic nutrients to surface water networks. While these permafrost subsidies represent a small portion of total fluvial DOM and nutrient fluxes, they could influence food webs and net ecosystem carbon balance via priming or nutrient effects that destabilize background DOM. We investigated how addition of biolabile carbon (acetate) and inorganic nutrients (nitrogen and phosphorus) affected DOM decomposition with 28\uffe2\uff80\uff90day incubations. We incubated late\uffe2\uff80\uff90summer stream water from 23 locations nested in seven northern or high\uffe2\uff80\uff90altitude regions in Asia, Europe, and North America. DOM loss ranged from 3% to 52%, showing a variety of longitudinal patterns within stream networks. DOM optical properties varied widely, but DOM showed compositional similarity based on Fourier transform ion cyclotron resonance mass spectrometry (FT\uffe2\uff80\uff90ICR MS) analysis. Addition of acetate and nutrients decreased bulk DOM mineralization (i.e., negative priming), with more negative effects on biodegradable DOM but neutral or positive effects on stable DOM. Unexpectedly, acetate and nutrients triggered breakdown of colored DOM (CDOM), with median decreases of 1.6% in the control and 22% in the amended treatment. Additionally, the uptake of added acetate was strongly limited by nutrient availability across sites. These findings suggest that biolabile DOM and nutrients released from degrading permafrost may decrease background DOM mineralization but alter stoichiometry and light conditions in receiving waterbodies. We conclude that priming and nutrient effects are coupled in northern aquatic ecosystems and that quantifying two\uffe2\uff80\uff90way interactions between DOM properties and environmental conditions could resolve conflicting observations about the drivers of DOM in permafrost zone waterways.</p>", "keywords": ["0106 biological sciences", "550", "permafrost regions", "thermokarst", "vaikutukset", "ta1171", "geosciences", "ikirouta", "carbon cycling", "551", "ravinteet", "01 natural sciences", "nutrients", "cryosphere and high-latitude processes", "Biology", "Research Articles", "organic matter", "0105 earth and related environmental sciences", "compositional similarities", "nutrients and nutrient cycling", "hiilen kierto", "ravinteiden kierr\u00e4tys", "15. Life on land", "rivers", "6. Clean water", "nutrient effects", "13. Climate action", "orgaaninen aines", "1171 Geotieteet", "SDG 6 - Clean Water and Sanitation", "joet", "permafrost"]}, "links": [{"href": "https://digitalcommons.usu.edu/context/biology_facpub/article/2820/viewcontent/2020GB006719.pdf"}, {"href": "https://doi.org/10.1029/2020gb006719"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Biogeochemical%20Cycles", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1029/2020gb006719", "name": "item", "description": "10.1029/2020gb006719", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1029/2020gb006719"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-01-01T00:00:00Z"}}, {"id": "10.1111/gcb.70247", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:47Z", "type": "Journal Article", "created": "2025-05-23", "title": "Carbon Emissions From Fires in Eastern Siberian Larch Forests", "description": "ABSTRACT<p>Siberian boreal forests have experienced increases in fire extent and intensity in recent years, which may threaten their role as carbon (C) sinks. Larch forests (Larix spp.) cover approximately 2.6 million km2 across Siberia, yet little is known about the magnitude and drivers of carbon combustion in these ecosystems. To address the paucity of field\uffe2\uff80\uff90based estimates of fuel load and consumption in Siberian larch forests, we sampled 41 burned plots, one to two years after fire, in Cajander larch (Larix cajanderi) forests in the Republic of Sakha (Yakutia), Russia. We estimated pre\uffe2\uff80\uff90fire carbon stocks and combustion with the objective of identifying the main drivers of carbon emissions. Pre\uffe2\uff80\uff90fire aboveground (trees and woody debris) and belowground carbon stocks at our study plots were 3.12\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff891.26\uffe2\uff80\uff89kg C m\uffe2\uff88\uff922 (mean\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff89standard deviation) and 3.50\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff890.93\uffe2\uff80\uff89kg C m\uffe2\uff88\uff922. We found that combustion averaged 3.20\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff890.75\uffe2\uff80\uff89kg C m\uffe2\uff88\uff922, of which 78% (2.49\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff890.56\uffe2\uff80\uff89kg C m\uffe2\uff88\uff922) stemmed from organic soil layers. These results suggest that severe fires in Cajander larch forests can result in combustion rates comparable to those observed in North American boreal forests and exceeding those previously reported for other forest types and burning conditions in Siberia. Carbon combustion was driven by both fire weather conditions and landscape variables, with pre\uffe2\uff80\uff90fire organic soil depth being the strongest predictor across our plots. Our study highlights the need to better account for Siberian larch forest fires and their impact on the carbon balance, especially given the expected climate\uffe2\uff80\uff90induced increase in fire extent and severity in this region.</p", "keywords": ["Larix cajanderi", "[SDU.OCEAN] Sciences of the Universe [physics]/Ocean", " Atmosphere", "eastern Siberia", "boreal forest carbon combustion climate change eastern Siberia fire severity larch forests Larix cajanderi", "Larix", "Forests", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "larch forests", "Fires", "Carbon", "Wildfires", "Siberia", "climate change", "fire severity", "carbon combustion", "boreal forest", "Research Article"], "contacts": [{"organization": "Delcourt, Clement, Rogers, Brendan, Akhmetzyanov, Linar, Izbicki, Brian, Scholten, Rebecca, Shestakova, Tatiana, van Wees, Dave, Mack, Michelle, Sass\u2010klaassen, Ute, Veraverbeke, Sander,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1111/gcb.70247"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.70247", "name": "item", "description": "10.1111/gcb.70247", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.70247"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-05-01T00:00:00Z"}}, {"id": "10.1111/gcb.15496", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:46Z", "type": "Journal Article", "created": "2020-12-20", "title": "Topsoil organic matter build\u2010up in glacier forelands around the world", "description": "Abstract<p>Since the last glacial maximum, soil formation related to ice\uffe2\uff80\uff90cover shrinkage has been one major sink of carbon accumulating as soil organic matter (SOM), a phenomenon accelerated by the ongoing global warming. In recently deglacierized forelands, processes of SOM accumulation, including those that control carbon and nitrogen sequestration rates and biogeochemical stability of newly sequestered carbon, remain poorly understood. Here, we investigate the build\uffe2\uff80\uff90up of SOM during the initial stages (up to 410\uffc2\uffa0years) of topsoil development in 10 glacier forelands distributed on four continents. We test whether the net accumulation of SOM on glacier forelands (i) depends on the time since deglacierization and local climatic conditions (temperature and precipitation); (ii) is accompanied by a decrease in its stability and (iii) is mostly due to an increasing contribution of organic matter from plant origin. We measured total SOM concentration (carbon, nitrogen), its relative hydrogen/oxygen enrichment, stable isotopic (13C, 15N) and carbon functional groups (C\uffe2\uff80\uff90H, C=O, C=C) compositions, and its distribution in carbon pools of different thermal stability. We show that SOM content increases with time and is faster on forelands experiencing warmer climates. The build\uffe2\uff80\uff90up of SOM pools shows consistent trends across the studied soil chronosequences. During the first decades of soil development, the low amount of SOM is dominated by a thermally stable carbon pool with a small and highly thermolabile pool. The stability of SOM decreases with soil age at all sites, indicating that SOM storage is dominated by the accumulation of labile SOM during the first centuries of soil development, and suggesting plant carbon inputs to soil (SOM depleted in nitrogen, enriched in hydrogen and in aromatic carbon). Our findings highlight the potential vulnerability of SOM stocks from proglacial areas to decomposition and suggest that their durability largely depends on the relative contribution of carbon inputs from plants.</p>", "keywords": ["[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics", "550", "Nitrogen", "Chronosequence", "551", "01 natural sciences", "[SDV.BV.BOT] Life Sciences [q-bio]/Vegetal Biology/Botanics", "Soil", "soil organic matter", "carbon stability; chronosequence; climate sensitivity; soil organic matter; topsoil development; Carbon; Nitrogen; Temperature; Ice Cover; Soil", "[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics", " Phylogenetics and taxonomy", "[SDV.EE.ECO] Life Sciences [q-bio]/Ecology", " environment/Ecosystems", "Ice Cover", "topsoil development", "Carbon stability", "0105 earth and related environmental sciences", "2. Zero hunger", "Soil organic matter", "Temperature", "Phylogenetics and taxonomy", "04 agricultural and veterinary sciences", "[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics", "15. Life on land", "Climate sensitivity", "Primary Research Articles", "Carbon", "chronosequence", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "13. Climate action", "[SDV.EE.ECO]Life Sciences [q-bio]/Ecology", "[SDE]Environmental Sciences", "Topsoil development", "climate sensitivity", "carbon stability; chronosequence; climate sensitivity; soil organic matter; topsoil development;", "0401 agriculture", " forestry", " and fisheries", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "environment/Ecosystems", "carbon stability"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/851691/2/khedim%202021%20submitted.pdf"}, {"href": "https://air.unimi.it/bitstream/2434/851691/3/khedim%202021%20Global%20Change%20Biol.pdf"}, {"href": "https://boa.unimib.it/bitstream/10281/300214/2/10281-300214_VoR.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.15496"}, {"href": "https://doi.org/10.1111/gcb.15496"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.15496", "name": "item", "description": "10.1111/gcb.15496", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.15496"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-01-16T00:00:00Z"}}, {"id": "10.1111/gcb.15460", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:46Z", "type": "Journal Article", "created": "2020-11-29", "title": "Leaching of dissolved organic carbon from mineral soils plays a significant role in the terrestrial carbon balance", "description": "Abstract<p>The leaching of dissolved organic carbon (DOC) from soils to the river network is an overlooked component of the terrestrial soil C budget. Measurements of DOC concentrations in soil, runoff and drainage are scarce and their spatial distribution highly skewed towards industrialized countries. The contribution of terrestrial DOC leaching to the global\uffe2\uff80\uff90scale C balance of terrestrial ecosystems thus remains poorly constrained. Here, using a process based, integrative, modelling approach to upscale from existing observations, we estimate a global terrestrial DOC leaching flux of 0.28\uffc2\uffa0\uffc2\uffb1\uffc2\uffa00.07\uffc2\uffa0Gt\uffc2\uffa0C\uffc2\uffa0year\uffe2\uff88\uff921 which is conservative, as it only includes the contribution of mineral soils. Our results suggest that globally about 15% of the terrestrial Net Ecosystem Productivity (NEP, calculated as the difference between Net Primary Production and soil respiration) is exported to aquatic systems as leached DOC. In the tropical rainforest, the leached fraction of terrestrial NEP even reaches 22%. Furthermore, we simulated spatial\uffe2\uff80\uff90temporal trends in DOC leaching from soil to the river networks from 1860 to 2010. We estimated a global increase in terrestrial DOC inputs to river network of 35\uffc2\uffa0Tg\uffc2\uffa0C\uffc2\uffa0year\uffe2\uff88\uff921 (14%) from 1860 to 2010. Despite their low global contribution to the DOC leaching flux, boreal regions have the highest relative increase (28%) while tropics have the lowest relative increase (9%) over the historical period (1860s compared to 2000s). The results from our observationally constrained model approach demonstrate that DOC leaching is a significant flux in the terrestrial C budget at regional and global scales.</p", "keywords": ["2. Zero hunger", "Ecologie", "550", "[SDE.MCG]Environmental Sciences/Global Changes", "mineral soils", "[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study", "15. Life on land", "Primary Research Articles", "dissolved organic carbon", "01 natural sciences", "Environnement et pollution", "leaching", "terrestrial carbon balance", "[SDE.MCG] Environmental Sciences/Global Changes", "13. Climate action", "global terrestrial carbon", "contr\u00f4le de la pollution", "Technologie de l'environnement", "[SDV.SA.SDS] Life Sciences [q-bio]/Agricultural sciences/Soil study", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.15460"}, {"href": "https://dipot.ulb.ac.be/dspace/bitstream/2013/320463/3/Nakhavali_GCB_20.pdf"}, {"href": "https://doi.org/10.1111/gcb.15460"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.15460", "name": "item", "description": "10.1111/gcb.15460", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.15460"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-12-14T00:00:00Z"}}, {"id": "10.1186/s12870-018-1411-5", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:19:22Z", "type": "Journal Article", "created": "2018-09-20", "title": "Root inoculation with Azotobacter chroococcum 76A enhances tomato plants adaptation to salt stress under low N conditions", "description": "The emerging roles of rhizobacteria in improving plant nutrition and stress protection have great potential for sustainable use in saline soils. We evaluated the function of the salt-tolerant strain Azotobacter chroococcum 76A as stress protectant in an important horticultural crop, tomato. Specifically we hypothesized that treatment of tomato plants with A. chroococcum 76A could improve plant performance under salinity stress and sub-optimal nutrient regimen.Inoculation of Micro Tom tomato plants with A. chroococcum 76A increased numerous growth parameters and also conferred protective effects under both moderate (50\u00a0mM NaCl) and severe (100\u00a0mM NaCl) salt stresses. These benefits were mostly observed under reduced nutrient regimen and were less appreciable in optimal nitrogen conditions. Therefore, the efficiency of A. chroococcum 76A was found to be dependent on the nutrient status of the rhizosphere. The expression profiles of LEA genes indicated that A. chroococcum 76A treated plants were more responsive to stress stimuli when compared to untreated controls. However, transcript levels of key nitrogen assimilation genes revealed that the optimal nitrogen regimen, in combination with the strain A. chroococcum 76A, may have saturated plant's ability to assimilate nitrogen.Roots inoculation with A. chroococcum 76A tomato promoted tomato plant growth, stress tolerance and nutrient assimilation efficiency under moderate and severe salinity. Inoculation with beneficial bacteria such as A. chroococcum 76A may be an ideal solution for low-input systems, where environmental constraints and limited chemical fertilization may affect the potential yield.", "keywords": ["0301 basic medicine", "Salinity", "Nitrogen", "Physiological", "Plant Science", "Plant Roots", "Tomato", "Micro tom", "03 medical and health sciences", "Solanum lycopersicum", "Gene Expression Regulation", " Plant", "Azotobacter chroococcum; Micro tom; Plant nutrition; Rhizobacteria; Salinity; Tomato; Adaptation", " Physiological; Azotobacter; Gene Expression Regulation", " Plant; Lycopersicon esculentum; Nitrogen; Plant Leaves; Plant Roots; Rhizosphere; Salt Tolerance; Symbiosis; Plant Science", "Rhizobacteria", "Adaptation", "Lycopersicon esculentum", "Plant nutrition", "Symbiosis", "2. Zero hunger", "0303 health sciences", "Botany", "Plant", "Salt Tolerance", "15. Life on land", "Adaptation", " Physiological", "6. Clean water", "3. Good health", "Plant Leaves", "Gene Expression Regulation", "QK1-989", "Azotobacter", "Rhizosphere", "Azotobacter chroococcum", "Research Article"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/728072/2/VanOosten2018_Article_RootInoculationWithAzotobacter.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1186/s12870-018-1411-5.pdf"}, {"href": "https://doi.org/10.1186/s12870-018-1411-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/BMC%20Plant%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12870-018-1411-5", "name": "item", "description": "10.1186/s12870-018-1411-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12870-018-1411-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-09-20T00:00:00Z"}}, {"id": "10.1186/s12870-019-1831-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:19:22Z", "type": "Journal Article", "created": "2019-05-30", "title": "Construction of a high-density genetic map and identification of loci controlling purple sepal trait of flower head in Brassica oleracea L. italica", "description": "Some broccoli (Brassica oleracea L. italic) accessions have purple sepals and cold weather would deepen the purple color, while the sepals of other broccoli lines are always green even in cold winter. The related locus or gene is still unknown. In this study, a high-density genetic map was constructed based on specific locus amplified fragment (SLAF) sequencing in a doubled-haploid segregation population with 127 individuals. And mapping of the purple sepal trait in flower heads based on phenotypic data collected during three seasons was performed.A genetic map was constructed, which contained 6694 SLAF markers with an average sequencing depth of 81.37-fold in the maternal line, 84-fold in the paternal line, and 15.76-fold in each individual population studied. In all of the annual data recorded, three quantitative trait loci (QTLs) were identified that were all distributed within the linkage group (LG) 1. Among them, a major locus, qPH.C01-2, located at 36.393\u2009cM LG1, was consistently detected in all analysis. Besides this locus, another two minor loci, qPH.C01-4 and qPH.C01-5, were identified near qPH.C01-2, based on the phenotypic data from spring of 2018.The purple sepal trait could be controlled by a major single locus and two minor loci. The genetic map and location of the purple sepal trait of flower heads provide an important foundation for mapping other compound traits and the identification of the genes related to purple sepal trait in broccoli.", "keywords": ["0301 basic medicine", "0303 health sciences", "QTL", "Pigmentation", "Broccoli", "Quantitative Trait Loci", "Botany", "Chromosome Mapping", "Brassica", "03 medical and health sciences", "Genetic map", "QK1-989", "Broccoli; Genetic map; Purple sepal; QTL; SLAF; Brassica; Chromosome Mapping; Inflorescence; Pigmentation; Quantitative Trait Loci", "Purple sepal", "Inflorescence", "SLAF", "Research Article"]}, "links": [{"href": "https://www.iris.unict.it/bitstream/20.500.11769/378740/2/Construction.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1186/s12870-019-1831-x.pdf"}, {"href": "https://doi.org/10.1186/s12870-019-1831-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/BMC%20Plant%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12870-019-1831-x", "name": "item", "description": "10.1186/s12870-019-1831-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12870-019-1831-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-05-30T00:00:00Z"}}, {"id": "10.1099/mgen.0.000363", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:31Z", "type": "Journal Article", "created": "2020-04-02", "title": "Analysis of the biodegradative and adaptive potential of the novel polychlorinated biphenyl degrader Rhodococcus sp. WAY2 revealed by its complete genome sequence", "description": "<p>The complete genome sequence of                                                Rhodococcus                                          sp. WAY2 (WAY2) consists of a circular chromosome, three linear replicons and a small circular plasmid. The linear replicons contain typical actinobacterial invertron-type telomeres with the central CGTXCGC motif. Comparative phylogenetic analysis of the 16S rRNA gene along with phylogenomic analysis based on the genome-to-genome blast distance phylogeny (GBDP) algorithm and digital DNA\uffe2\uff80\uff93DNA hybridization (dDDH) with other                                                Rhodococcus                                          type strains resulted in a clear differentiation of WAY2, which is likely a new species. The genome of WAY2 contains five distinct clusters of bph, etb and nah genes, putatively involved in the degradation of several aromatic compounds. These clusters are distributed throughout the linear plasmids. The high sequence homology of the ring-hydroxylating subunits of these systems with other known enzymes has allowed us to model the range of aromatic substrates they could degrade. Further functional characterization revealed that WAY2 was able to grow with biphenyl, naphthalene and xylene as sole carbon and energy sources, and could oxidize multiple aromatic compounds, including ethylbenzene, phenanthrene, dibenzofuran and toluene. In addition, WAY2 was able to co-metabolize 23 polychlorinated biphenyl congeners, consistent with the five different ring-hydroxylating systems encoded by its genome. WAY2 could also use n-alkanes of various chain-lengths as a sole carbon source, probably due to the presence of alkB and ladA gene copies, which are only found in its chromosome. These results show that WAY2 has a potential to be used for the biodegradation of multiple organic compounds.</p>", "keywords": ["0301 basic medicine", "0303 health sciences", "PCB", "Whole Genome Sequencing", "AlkB Enzymes", "Rhodococcus; biodegradation; PAH; PCB; hydrocarbons; complete genome", "High-Throughput Nucleotide Sequencing", "PAH", "Naphthalenes", "Xylenes", "Biolog\u00eda y Biomedicina / Biolog\u00eda", "biodegradation", "Polychlorinated Biphenyls", "Hydrocarbons", "Complete genome", "03 medical and health sciences", "Biodegradation", " Environmental", "RNA", " Ribosomal", " 16S", "Biodegradation", "Cluster Analysis", "Rhodococcus", "Phylogeny", "Research Article"]}, "links": [{"href": "https://doi.org/10.1099/mgen.0.000363"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Genomics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1099/mgen.0.000363", "name": "item", "description": "10.1099/mgen.0.000363", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1099/mgen.0.000363"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-01T00:00:00Z"}}, {"id": "10.1111/gcb.15547", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:46Z", "type": "Journal Article", "created": "2021-02-06", "title": "Feasibility of the 4 per 1000 aspirational target for soil carbon: A case study for France", "description": "Abstract<p>Increasing soil organic carbon (SOC) stocks is a promising way to mitigate the increase in atmospheric CO2 concentration. Based on a simple ratio between CO2 anthropogenic emissions and SOC stocks worldwide, it has been suggested that a 0.4% (4 per 1000) yearly increase in SOC stocks could compensate for current anthropogenic CO2 emissions. Here, we used a reverse RothC modelling approach to estimate the amount of C inputs to soils required to sustain current SOC stocks and to increase them by 4\uffe2\uff80\uffb0 per year over a period of 30\uffc2\uffa0years. We assessed the feasibility of this aspirational target first by comparing the required C input with net primary productivity (NPP) flowing to the soil, and second by considering the SOC saturation concept. Calculations were performed for mainland France, at a 1\uffc2\uffa0km grid cell resolution. Results showed that a 30%\uffe2\uff80\uff9340% increase in C inputs to soil would be needed to obtain a 4\uffe2\uff80\uffb0 increase per year over a 30\uffe2\uff80\uff90year period. 88.4% of cropland areas were considered unsaturated in terms of mineral\uffe2\uff80\uff90associated SOC, but characterized by a below target C balance, that is, less NPP available than required to reach the 4\uffe2\uff80\uffb0 aspirational target. Conversely, 90.4% of unimproved grasslands were characterized by an above target C balance, that is, enough NPP to reach the 4\uffe2\uff80\uffb0 objective, but 59.1% were also saturated. The situation of improved grasslands and forests was more evenly distributed among the four categories (saturated vs. unsaturated and above vs below target C balance). Future data from soil monitoring networks should enable to validate these results. Overall, our results suggest that, for mainland France, priorities should be (1) to increase NPP returns in cropland soils that are unsaturated and have a below target carbon balance and (2) to preserve SOC stocks in other land uses.</p>", "keywords": ["[SDV.SA]Life Sciences [q-bio]/Agricultural sciences", "Carbon Sequestration", "550", "[SDE.MCG]Environmental Sciences/Global Changes", "RothC", "01 natural sciences", "630", "climate change mitigation", "Soil", "4 per 1000", "net primary productivity", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", " environment", "0105 earth and related environmental sciences", "[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", " Atmosphere", "2. Zero hunger", "[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", "[SDV.SA] Life Sciences [q-bio]/Agricultural sciences", "Atmosphere", "[SDU.OCEAN] Sciences of the Universe [physics]/Ocean", " Atmosphere", "04 agricultural and veterinary sciences", "15. Life on land", "Primary Research Articles", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "Carbon", "soil organic carbon", "[SDE.MCG] Environmental Sciences/Global Changes", "13. Climate action", "SOC saturation", "Feasibility Studies", "0401 agriculture", " forestry", " and fisheries", "France", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", "environment"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.15547"}, {"href": "https://doi.org/10.1111/gcb.15547"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.15547", "name": "item", "description": "10.1111/gcb.15547", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.15547"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-04-08T00:00:00Z"}}, {"id": "10.1111/gcb.15897", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:46Z", "type": "Journal Article", "created": "2021-09-20", "title": "Achievable agricultural soil carbon sequestration across Europe from country-specific estimates.", "description": "Abstract<p>The role of soils in the global carbon cycle and in reducing GHG emissions from agriculture has been increasingly acknowledged. The \uffe2\uff80\uff984 per 1000\uffe2\uff80\uff99 (4p1000) initiative has become a prominent action plan for climate change mitigation and achieve food security through an annual increase in soil organic carbon (SOC) stocks by 0.4%, (i.e. 4\uffe2\uff80\uffb0 per year). However, the feasibility of the 4p1000 scenario and, more generally, the capacity of individual countries to implement soil carbon sequestration (SCS) measures remain highly uncertain. Here, we evaluated country\uffe2\uff80\uff90specific SCS potentials of agricultural land for 24 countries in Europe. Based on a detailed survey of available literature, we estimate that between 0.1% and 27% of the agricultural greenhouse gas (GHG) emissions can potentially be compensated by SCS annually within the next decades. Measures varied widely across countries, indicating differences in country\uffe2\uff80\uff90specific environmental conditions and agricultural practices. None of the countries' SCS potential reached the aspirational goal of the 4p1000 initiative, suggesting that in order to achieve this goal, a wider range of measures and implementation pathways need to be explored. Yet, SCS potentials exceeded those from previous pan\uffe2\uff80\uff90European modelling scenarios, underpinning the general need to include national/regional knowledge and expertise to improve estimates of SCS potentials. The complexity of the chosen SCS measurement approaches between countries ranked from tier 1 to tier 3 and included the effect of different controlling factors, suggesting that methodological improvements and standardization of SCS accounting are urgently required. Standardization should include the assessment of key controlling factors such as realistic areas, technical and practical feasibility, trade\uffe2\uff80\uff90offs with other GHG and climate change. Our analysis suggests that country\uffe2\uff80\uff90specific knowledge and SCS estimates together with improved data sharing and harmonization are crucial to better quantify the role of soils in offsetting anthropogenic GHG emissions at global level.</p>", "keywords": ["2. Zero hunger", "Carbon Sequestration", "Ecology", "Soil Science", "Agriculture", "04 agricultural and veterinary sciences", "15. Life on land", "Primary Research Articles", "S590 Soill / Talajtan", "7. Clean energy", "333", "Carbon", "12. Responsible consumption", "Europe", "Soil", "13. Climate action", "11. Sustainability", "0401 agriculture", " forestry", " and fisheries", "Agricultural Science"]}, "links": [{"href": "https://pub.epsilon.slu.se/26185/1/rodrigues_l_et_al_211122.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.15897"}, {"href": "https://real.mtak.hu/139396/1/GlobalChangeBiology-2021-Rodrigues-AchievableagriculturalsoilcarbonsequestrationacrossEuropefrom.pdf"}, {"href": "https://doi.org/10.1111/gcb.15897"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.15897", "name": "item", "description": "10.1111/gcb.15897", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.15897"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-06T00:00:00Z"}}, {"id": "10.1111/geb.13576", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:49Z", "type": "Journal Article", "created": "2022-09-01", "title": "The coordination of green\u2013brown food webs and their disruption by anthropogenic nutrient inputs", "description": "AbstractAim<p>Our goal was to quantify nitrogen flows and stocks in green\uffe2\uff80\uff93brown food webs in different ecosystems, how they differ across ecosystems and how they respond to nutrient enrichment.</p>Location<p>Global.</p>Time period<p>Contemporary.</p>Major taxa studied<p>Plants, phytoplankton, macroalgae, invertebrates, vertebrates and zooplankton.</p>Methods<p>Data from &gt;500 studies were combined to estimate nitrogen stocks and fluxes in green\uffe2\uff80\uff93brown food webs in forests, grasslands, brackish environments, seagrass meadows, lakes and oceans. We compared the stocks, fluxes and metabolic rates of different functional groups within each food web. We also used these estimates to build a dynamical model to test the response of the ecosystems to nutrient enrichment.</p>Results<p>We found surprising symmetries between the green and brown channels across ecosystems, in their stocks, fluxes and consumption coefficients and mortality rates. We also found that nitrogen enrichment, either organic or inorganic, can disrupt this balance between the green and brown channels.</p>Main conclusions<p>Linking green and brown food webs reveals a previously hidden symmetry between herbivory and detritivory, which appears to be a widespread property of natural ecosystems but can be disrupted by anthropogenic nitrogen additions.</p", "keywords": ["0106 biological sciences", "0301 basic medicine", "2. Zero hunger", "03 medical and health sciences", "Ecology", "13. Climate action", "15. Life on land", "01 natural sciences", "333", "Research Articles"]}, "links": [{"href": "https://pub.epsilon.slu.se/29692/1/zelnik-y-r-et-al-20221118.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/geb.13576"}, {"href": "https://doi.org/10.1111/geb.13576"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Ecology%20and%20Biogeography", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/geb.13576", "name": "item", "description": "10.1111/geb.13576", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/geb.13576"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-09-01T00:00:00Z"}}, {"id": "20.500.14243/346510", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:25:33Z", "type": "Journal Article", "created": "2019-01-07", "title": "Quantifying Degradative Loss of Terrigenous Organic Carbon in Surface Sediments Across the Laptev and East Siberian Sea", "description": "Abstract<p>Ongoing permafrost thaw in the Arctic may remobilize large amounts of old organic matter. Upon transport to the Siberian shelf seas, this material may be degraded and released to the atmosphere, exported off\uffe2\uff80\uff90shelf, or buried in the sediments. While our understanding of the fate of permafrost\uffe2\uff80\uff90derived organic matter in shelf waters is improving, poor constraints remain regarding degradation in sediments. Here we use an extensive data set of organic carbon concentrations and isotopes (n\uffc2\uffa0=\uffc2\uffa0109) to inventory terrigenous organic carbon (terrOC) in surficial sediments of the Laptev and East Siberian Seas (LS\uffc2\uffa0+\uffc2\uffa0ESS). Of these ~2.7 Tg terrOC about 55% appear resistant to degradation on a millennial timescale. A first\uffe2\uff80\uff90order degradation rate constant of 1.5\uffc2\uffa0kyr\uffe2\uff88\uff921 is derived by combining a previously established relationship between water depth and cross\uffe2\uff80\uff90shelf sediment\uffe2\uff80\uff90terrOC transport time with mineral\uffe2\uff80\uff90associated terrOC loadings. This yields a terrOC degradation flux of ~1.7\uffc2\uffa0Gg/year from surficial sediments during cross\uffe2\uff80\uff90shelf transport, which is orders of magnitude lower than earlier estimates for degradation fluxes of dissolved and particulate terrOC in the water column of the LS\uffc2\uffa0+\uffc2\uffa0ESS. The difference is mainly due to the low degradation rate constant of sedimentary terrOC, likely caused by a combination of factors: (i) the lower availability of oxygen in the sediments compared to fully oxygenated waters, (ii) the stabilizing role of terrOC\uffe2\uff80\uff90mineral associations, and (iii) the higher proportion of material that is intrinsically recalcitrant due to its chemical/molecular structure in sediments. Sequestration of permafrost\uffe2\uff80\uff90released terrOC in shelf sediments may thereby attenuate the otherwise expected permafrost carbon\uffe2\uff80\uff90climate feedback.</p", "keywords": ["carbon fluxes; degradation; Arctic shelves; permafrost; marine sediments", "15. Life on land", "01 natural sciences", "6. Clean water", "13. Climate action", "SDG 14 - Life Below Water", "14. Life underwater", "carbon fluxes", "Arctic shelves", "marine sediments", "Research Articles", "degradation", "permafrost", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2018GB005967"}, {"href": "https://doi.org/20.500.14243/346510"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Biogeochemical%20Cycles", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "20.500.14243/346510", "name": "item", "description": "20.500.14243/346510", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/20.500.14243/346510"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-01-01T00:00:00Z"}}, {"id": "10.1126/sciadv.aau8052", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:19:10Z", "type": "Journal Article", "created": "2019-02-14", "title": "Source apportionment of circum-Arctic atmospheric black carbon from isotopes and modeling", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Isotopes pinpoint strong seasonal variations in black carbon sources with consistent patterns at sites around the Arctic.</p></article>", "keywords": ["105206 Meteorology", "550", "13. Climate action", "SDG 13 \u2013 Ma\u00dfnahmen zum Klimaschutz", "105206 Meteorologie", "SDG 13 - Climate Action", "14. Life underwater", "01 natural sciences", "7. Clean energy", "Research Articles", "0105 earth and related environmental sciences", "3. Good health"]}, "links": [{"href": "http://pure.iiasa.ac.at/id/eprint/15763/1/eaau8052.full.pdf"}, {"href": "https://pure.iiasa.ac.at/id/eprint/15763/1/eaau8052.full.pdf"}, {"href": "https://doi.org/10.1126/sciadv.aau8052"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20Advances", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1126/sciadv.aau8052", "name": "item", "description": "10.1126/sciadv.aau8052", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1126/sciadv.aau8052"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-02-01T00:00:00Z"}}, {"id": "10.1101/2023.10.03.560709", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:33Z", "type": "Journal Article", "created": "2023-10-04", "title": "Bacteria face trade-offs in the decomposition of complex biopolymers", "description": "Abstract<p>Although depolymerization of complex carbohydrates is a growth-limiting bottleneck for microbial decomposers, we still lack understanding about how the production of different types of extracellular enzymes affect individual microbes and in turn the performance of whole decomposer communities. In this work we use a theoretical model to evaluate the potential trade-offs faced by microorganisms in biopolymer decomposition which arise due to the varied biochemistry of different depolymerizing enzyme classes. We specifically consider two broad classes of depolymerizing extracellular enzymes, which are widespread across microbial taxa: exo-enzymes that cleave small units from the ends of polymer chains and endo-enzymes that act at random positions generating degradation products of varied sizes. Our results demonstrate a fundamental trade-off in the production of these enzymes, which is independent of system\uffe2\uff80\uff99s complexity and which appears solely from the intrinsically different temporal depolymerization dynamics. As a consequence, specialists that produce either exo- or only endo-enzymes limit their growth to high or low substrate conditions, respectively. Conversely, generalists that produce both enzymes in an optimal ratio expand their niche and benefit from the synergy between the two enzymes. Finally, our results show that, in spatially-explicit environments, consortia composed of endo- and exo-specialists can only exist under oligotrophic conditions. In summary, our analysis demonstrates that the (evolutionary or ecological) selection of a depolymerization pathway will affect microbial fitness under low- or high substrate conditions, with impacts on the ecological dynamics of microbial communities. It provides a possible explanation why many polysaccharide degraders in nature show the genetic potential to produce both of these enzyme classes.</p>Author summary<p>The decomposition of polysaccharides by microbes is a key process in the global carbon cycle. It requires the joint action of a variety of microbially-produced extracellular enzymes. They can be broadly classified into endo-enzymes, that act in the middle of polymers, and exo-enzymes, that cleave units from polymer ends. Little is known about the benefits for microbes producing a certain enzyme type and the interplay between enzyme producing strategies in mixed communities. This hampers our comprehensive understanding of decomposition in terrestrial and marine ecosystems and thus limits the prediction of decomposition processes, for example in a changing climate.</p><p>Based on theoretical modelling, we revealed a fundamental trade-off in the action of these enzymes. While exo-enzymes are more efficient at high substrate conditions, endo-enzymes perform better when substrate is low. Generalists producing both enzymes expand their ecological niche of substrate availability compared to specialists only producing one of the two types. Complementary specialists only co-exist in oligotrophic conditions. We conclude that producing enzymes for specific steps within polymer degradation represents relevant ecological strategies for microbes in decomposer communities.</p", "keywords": ["2. Zero hunger", "106022 Mikrobiologie", "decomposition", "Bacteria", "Polymers", "QH301-705.5", "complex biopolymers", "Monomers", "Computational Biology", "Chitin", "Models", " Biological", "Enzymes", "Biopolymers", "Consortia", "106026 \u00d6kosystemforschung", "Oligomers", "106022 Microbiology", "14. Life underwater", "Biology (General)", "106026 Ecosystem research", "bacteria", "Depolymerization", "Research Article"]}, "links": [{"href": "https://doi.org/10.1101/2023.10.03.560709"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20Computational%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/2023.10.03.560709", "name": "item", "description": "10.1101/2023.10.03.560709", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/2023.10.03.560709"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-10-03T00:00:00Z"}}, {"id": "10.1111/gcb.16137", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:46Z", "type": "Journal Article", "created": "2022-03-14", "title": "Reduced methane emissions in former permafrost soils driven by vegetation and microbial changes following drainage", "description": "Abstract<p>In Arctic regions, thawing permafrost soils are projected to release 50 to 250 Gt of carbon by 2100. This data is mostly derived from carbon\uffe2\uff80\uff90rich wetlands, although 71% of this carbon pool is stored in faster\uffe2\uff80\uff90thawing mineral soils, where ecosystems close to the outer boundaries of permafrost regions are especially vulnerable. Although extensive data exists from currently thawing sites and short\uffe2\uff80\uff90term thawing experiments, investigations of the long\uffe2\uff80\uff90term changes following final thaw and co\uffe2\uff80\uff90occurring drainage are scarce. Here we show ecosystem changes at two comparable tussock tundra sites with distinct permafrost thaw histories, representing 15 and 25\uffc2\uffa0years of natural drainage, that resulted in a 10\uffe2\uff80\uff90fold decrease in CH4 emissions (3.2\uffc2\uffa0\uffc2\uffb1\uffc2\uffa02.2 vs. 0.3\uffc2\uffa0\uffc2\uffb1\uffc2\uffa00.4\uffc2\uffa0mg C\uffe2\uff80\uff90CH4\uffc2\uffa0m\uffe2\uff88\uff922\uffc2\uffa0day\uffe2\uff88\uff921), while CO2 emissions were comparable. These data extend the time perspective from earlier studies based on short\uffe2\uff80\uff90term experimental drainage. The overall microbial community structures did not differ significantly between sites, although the drier top soils at the most advanced site led to a loss of methanogens and their syntrophic partners in surface layers while the abundance of methanotrophs remained unchanged. The resulting deeper aeration zones likely increased CH4 oxidation due to the longer residence time of CH4 in the oxidation zone, while the observed loss of aerenchyma plants reduced CH4 diffusion from deeper soil layers directly to the atmosphere. Our findings highlight the importance of including hydrological, vegetation and microbial specific responses when studying long\uffe2\uff80\uff90term effects of climate change on CH4 emissions and underscores the need for data from different soil types and thaw histories.</p", "keywords": ["[SDE] Environmental Sciences", "Tundra ecosystems", "post-permafrost soil", "550", "Arctic Regions", "methane", "Microbiota", "Permafrost", "15. Life on land", "01 natural sciences", "Carbon", "Soil", "Arctic", "climate change", "13. Climate action", "[SDE]Environmental Sciences", "Methane", "Research Articles", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1111/gcb.16137"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.16137", "name": "item", "description": "10.1111/gcb.16137", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.16137"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-03-14T00:00:00Z"}}, {"id": "10.1101/2023.12.16.572011", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:33Z", "type": "Journal Article", "created": "2023-12-18", "title": "Open Soil Spectral Library (OSSL): Building reproducible soil calibration models through open development and community engagement", "description": "Abstract<p>Soil spectroscopy is a widely used method for estimating soil properties that are important to environmental and agricultural monitoring. However, a bottleneck to its more widespread adoption is the need for establishing large reference datasets for training machine learning (ML) models, which are called soil spectral libraries (SSLs). Similarly, the prediction capacity of new samples is also subject to the number and diversity of soil types and conditions represented in the SSLs. To help bridge this gap and enable hundreds of stakeholders to collect more affordable soil data by leveraging a centralized open resource, the Soil Spectroscopy for Global Good has created the Open Soil Spectral Library (OSSL). In this paper, we describe the procedures for collecting and harmonizing several SSLs that are incorporated into the OSSL, followed by exploratory analysis and predictive modeling. The results of 10-fold cross-validation with refitting show that, in general, mid-infrared (MIR)-based models are significantly more accurate than visible and near-infrared (VisNIR) or near-infrared (NIR) models. From independent model evaluation, we found that Cubist comes out as the best-performing ML algorithm for the calibration and delivery of reliable outputs (prediction uncertainty and representation flag). Although many soil properties are well predicted, total sulfur, extractable sodium, and electrical conductivity performed poorly in all spectral regions, with some other extractable nutrients and physical soil properties also performing poorly in one or two spectral regions (VisNIR or Neospectra NIR). Hence, the use of predictive models based solely on spectral variations has limitations. This study also presents and discusses several other open resources that were developed from the OSSL, aspects of opening data, current limitations, and future development. With this genuinely open science project, we hope that OSSL becomes the driver of the soil spectroscopy community to accelerate the pace of scientific discovery and innovation.</p", "keywords": ["2. Zero hunger", "Science", "Spectrum Analysis", "Q", "R", "15. Life on land", "Machine Learning", "Soil", "13. Climate action", "Calibration", "Medicine", "Algorithms", "Research Article", "Environmental Monitoring"]}, "links": [{"href": "https://doi.org/10.1101/2023.12.16.572011"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/2023.12.16.572011", "name": "item", "description": "10.1101/2023.12.16.572011", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/2023.12.16.572011"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-17T00:00:00Z"}}, {"id": "10.1111/gcb.16394", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:46Z", "type": "Journal Article", "created": "2022-08-17", "title": "Lowering water table reduces carbon sink strength and carbon stocks in northern peatlands", "description": "Abstract<p>Peatlands at high latitudes have accumulated &gt;400\uffe2\uff80\uff89Pg carbon (C) because saturated soil and cold temperatures suppress C decomposition. This substantial amount of C in Arctic and Boreal peatlands is potentially subject to increased decomposition if the water table (WT) decreases due to climate change, including permafrost thaw\uffe2\uff80\uff90related drying. Here, we optimize a version of the Organizing Carbon and Hydrology In Dynamic Ecosystems model (ORCHIDEE\uffe2\uff80\uff90PCH4) using site\uffe2\uff80\uff90specific observations to investigate changes in CO2 and CH4 fluxes as well as C stock responses to an experimentally manipulated decrease of WT at six northern peatlands. The unmanipulated control peatlands, with the WT &lt;20\uffe2\uff80\uff89cm on average (seasonal max up to 45\uffe2\uff80\uff89cm) below the surface, currently act as C sinks in most years (58\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff8934\uffe2\uff80\uff89g C\uffe2\uff80\uff89m\uffe2\uff88\uff922\uffc2\uffa0year\uffe2\uff88\uff921; including 6\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff897\uffe2\uff80\uff89g C\uffe2\uff80\uff93CH4 m\uffe2\uff88\uff922\uffc2\uffa0year\uffe2\uff88\uff921 emission). We found, however, that lowering the WT by 10\uffe2\uff80\uff89cm reduced the CO2 sink by 13\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff8915\uffe2\uff80\uff89g\uffe2\uff80\uff89C\uffe2\uff80\uff89m\uffe2\uff88\uff922\uffc2\uffa0year\uffe2\uff88\uff921 and decreased CH4 emission by 4\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff894\uffe2\uff80\uff89g CH4 m\uffe2\uff88\uff922\uffc2\uffa0year\uffe2\uff88\uff921, thus accumulating less C over 100\uffe2\uff80\uff89years (0.2\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff890.2\uffe2\uff80\uff89kg\uffe2\uff80\uff89C\uffe2\uff80\uff89m\uffe2\uff88\uff922). Yet, the reduced emission of CH4, which has a larger greenhouse warming potential, resulted in a net decrease in greenhouse gas balance by 310\uffe2\uff80\uff89\uffc2\uffb1\uffe2\uff80\uff89360\uffe2\uff80\uff89g\uffe2\uff80\uff89CO2\uffe2\uff80\uff90eq\uffc2\uffa0m\uffe2\uff88\uff922\uffc2\uffa0year\uffe2\uff88\uff921. Peatlands with the initial WT close to the soil surface were more vulnerable to C loss: Non\uffe2\uff80\uff90permafrost peatlands lost &gt;2\uffe2\uff80\uff89kg\uffe2\uff80\uff89C\uffe2\uff80\uff89m\uffe2\uff88\uff922 over 100\uffe2\uff80\uff89years when WT is lowered by 50\uffe2\uff80\uff89cm, while permafrost peatlands temporally switched from C sinks to sources. These results highlight that reductions in C storage capacity in response to drying of northern peatlands are offset in part by reduced CH4 emissions, thus slightly reducing the positive carbon climate feedbacks of peatlands under a warmer and drier future climate scenario.</p", "keywords": ["570", "Carbon Sequestration", "permafrost thaw", "land surface model", "551", "01 natural sciences", "manipulation experiment", "Greenhouse Gases", "Soil", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", " environment", "Groundwater", "Research Articles", "Ecosystem", "0105 earth and related environmental sciences", "[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", " Atmosphere", "[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", "Atmosphere", "[SDU.OCEAN] Sciences of the Universe [physics]/Ocean", " Atmosphere", "carbon stock", "high latitude", "Carbon Dioxide", "15. Life on land", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "Carbon", "carbon flux", "13. Climate action", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", "environment", "Methane", "drainage"]}, "links": [{"href": "https://eprints.whiterose.ac.uk/190653/1/Global%20Change%20Biology%20-%202022%20-%20Kwon%20-%20Lowering%20water%20table%20reduces%20carbon%20sink%20strength%20and%20carbon%20stocks%20in%20northern.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.16394"}, {"href": "https://doi.org/10.1111/gcb.16394"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.16394", "name": "item", "description": "10.1111/gcb.16394", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.16394"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-08-30T00:00:00Z"}}, {"id": "10.1111/gcb.14935", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:45Z", "type": "Journal Article", "created": "2020-01-20", "title": "Origin of volatile organic compound emissions from subarctic tundra under global warming", "description": "Abstract<p>Warming occurs in the Arctic twice as fast as the global average, which in turn leads to a large enhancement in terpenoid emissions from vegetation. Volatile terpenoids are the main class of biogenic volatile organic compounds (VOCs) that play crucial roles in atmospheric chemistry and climate. However, the biochemical mechanisms behind the temperature\uffe2\uff80\uff90dependent increase in VOC emissions from subarctic ecosystems are largely unexplored. Using 13CO2\uffe2\uff80\uff90labeling, we studied the origin of VOCs and the carbon (C) allocation under global warming in the soil\uffe2\uff80\uff93plant\uffe2\uff80\uff93atmosphere system of contrasting subarctic heath tundra vegetation communities characterized by dwarf shrubs of the genera Salix or Betula. The projected temperature rise of the subarctic summer by 5\uffc2\uffb0C was realistically simulated in sophisticated climate chambers. VOC emissions strongly depended on the plant species composition of the heath tundra. Warming caused increased VOC emissions and significant changes in the pattern of volatiles toward more reactive hydrocarbons. The 13C was incorporated to varying degrees in different monoterpene and sesquiterpene isomers. We found that de novo monoterpene biosynthesis contributed to 40%\uffe2\uff80\uff9344% (Salix) and 60%\uffe2\uff80\uff9368% (Betula) of total monoterpene emissions under the current climate, and that warming increased the contribution to 50%\uffe2\uff80\uff9358% (Salix) and 87%\uffe2\uff80\uff9395% (Betula). Analyses of above\uffe2\uff80\uff90 and belowground 12/13C showed shifts of C allocation in the plant\uffe2\uff80\uff93soil systems and negative effects of warming on C sequestration by lowering net ecosystem exchange of CO2 and increasing C loss as VOCs. This comprehensive analysis provides the scientific basis for mechanistically understanding the processes controlling terpenoid emissions, required for modeling VOC emissions from terrestrial ecosystems and predicting the future chemistry of the arctic atmosphere. By changing the chemical composition and loads of VOCs into the atmosphere, the current data indicate that global warming in the Arctic may have implications for regional and global climate and for the delicate tundra ecosystems.</p>", "keywords": ["0301 basic medicine", "volatile organic compound", "Volatile Organic Compounds", "0303 health sciences", "tundra", "net ecosystem exchange", "Arctic Regions", "15. Life on land", "global warming", "Primary Research Articles", "Global Warming", "13co2 ; Arctic ; Climate Change ; De Novo Biosynthesis ; Global Warming ; Net Ecosystem Exchange ; Subarctic Heath ; Terpene ; Tundra ; Volatile Organic Compound", "03 medical and health sciences", "Arctic", "climate change", "de novo biosynthesis", "subarctic heath", "13. Climate action", "(CO2)-C-13", "11. Sustainability", "terpene", "Tundra", "Ecosystem"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.14935"}, {"href": "https://doi.org/10.1111/gcb.14935"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.14935", "name": "item", "description": "10.1111/gcb.14935", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.14935"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-01-20T00:00:00Z"}}, {"id": "10.1080/13621025.2024.2428667", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:19Z", "type": "Journal Article", "created": "2024-11-20", "title": "Subaltern citizenship: naturalization and belonging for New Russian citizens from Central Asia", "description": "This article explores the perils of belonging among recently naturalized citizens in Russia from Tajikistan. As citizenship in Russia becomes accessible to ethnicized migrant workers, it becomes subalternized, a process broader than citizenship's neoliberalization. A racialized understanding of ethnicity, itself a legacy of the Soviet empire, shapes understandings of political membership in Russia. This has influenced both Russian migration legislation, as well as Russian citizenship, as former migrant workers become Russian citizens en masse. This article also explores how recently naturalized citizens embrace the ambiguity of new political forms of belonging within the deeply charged politics of new citizens' inclusion. Former migrant workers construe their belonging in both Russia and Tajikistan, claiming their transnational lives and rights to motherland/s as active political agents. Ideas of 'motherland', however, are not strictly national or territorial: motherland is understood through localized and spatial experiences and memories. At the same time, former migrant workers' inclusion as political subjects in Russia has heightened the fragility of Russian citizenship itself, whereby citizenship can now be revoked and annulled with as little as a court order.", "keywords": ["Research Articles"], "contacts": [{"organization": "Bahovadinova, Malika", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1080/13621025.2024.2428667"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Citizenship%20Studies", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1080/13621025.2024.2428667", "name": "item", "description": "10.1080/13621025.2024.2428667", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1080/13621025.2024.2428667"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-10-02T00:00:00Z"}}, {"id": "10.1093/femsec/fiad080", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:24Z", "type": "Journal Article", "created": "2023-07-21", "title": "Vegetation, topography, and soil depth drive microbial community structure in two Swedish grasslands", "description": "Abstract                <p>Soil microbial diversity and community composition are shaped by various factors linked to land management, topographic position, and vegetation. To study the effects of these drivers, we characterized fungal and bacterial communities from bulk soil at four soil depths ranging from the surface to below the rooting zone of two Swedish grasslands with differing land-use histories, each including both an upper and a lower catenary position. We hypothesized that differences in plant species richness and plant functional group composition between the four study sites would drive the variation in soil microbial community composition and correlate with microbial diversity, and that microbial biomass and diversity would decrease with soil depth following a decline in resource availability. While vegetation was identified as the main driver of microbial community composition, the explained variation was significantly higher for bacteria than for fungi, and the communities differed more between grasslands than between catenary positions. Microbial biomass derived from DNA abundance decreased with depth, but diversity remained relatively stable, indicating diverse microbial communities even below the rooting zone. Finally, plant-microbial diversity correlations were significant only for specific plant and fungal functional groups, emphasizing the importance of functional interactions over general species richness.</p", "keywords": ["2. Zero hunger", "Sweden", "Soil", "550", "Bacteria", "Microbiota", "Fungi", "Soil Science", "15. Life on land", "Plants", "Grassland", "Soil Microbiology", "Research Article"]}, "links": [{"href": "https://pub.epsilon.slu.se/31577/1/guasconi-d-et-al-20230821.pdf"}, {"href": "https://academic.oup.com/femsec/article-pdf/99/8/fiad080/50965337/fiad080.pdf"}, {"href": "https://doi.org/10.1093/femsec/fiad080"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/FEMS%20Microbiology%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/femsec/fiad080", "name": "item", "description": "10.1093/femsec/fiad080", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/femsec/fiad080"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-07-20T00:00:00Z"}}, {"id": "10.1093/femsec/fiad145", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:24Z", "type": "Journal Article", "created": "2023-11-09", "title": "Vegetation type, not the legacy of warming, modifies the response of microbial functional genes and greenhouse gas fluxes to drought in Oro-Arctic and alpine regions", "description": "Abstract                <p>Climate warming and summer droughts alter soil microbial activity, affecting greenhouse gas (GHG) emissions in Arctic and alpine regions. However, the long-term effects of warming, and implications for future microbial resilience, are poorly understood. Using one alpine and three Arctic soils subjected to in situ long-term experimental warming, we simulated drought in laboratory incubations to test how microbial functional-gene abundance affects fluxes in three GHGs: carbon dioxide, methane, and nitrous oxide. We found that responses of functional gene abundances to drought and warming are strongly associated with vegetation type and soil carbon. Our sites ranged from a wet, forb dominated, soil carbon-rich systems to a drier, soil carbon-poor alpine site. Resilience of functional gene abundances, and in turn methane and carbon dioxide fluxes, was lower in the wetter, carbon-rich systems. However, we did not detect an effect of drought or warming on nitrous oxide fluxes. All gene\uffe2\uff80\uff93GHG relationships were modified by vegetation type, with stronger effects being observed in wetter, forb-rich soils. These results suggest that impacts of warming and drought on GHG emissions are linked to a complex set of microbial gene abundances and may be habitat-specific.</p", "keywords": ["570", "550", "functional genes", "methane", "Nitrous Oxide", "carbon dioxide", "15. Life on land", "Carbon Dioxide", "6. Clean water", "Droughts", "resistance", "Greenhouse Gases", "Soil", "ITEX", "13. Climate action", "XXXXXX - Unknown", "greenhouse gases", "microbial community", "resilience", "Methane", "Genes", " Microbial", "Research Article"]}, "links": [{"href": "https://doi.org/10.1093/femsec/fiad145"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/FEMS%20Microbiology%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/femsec/fiad145", "name": "item", "description": "10.1093/femsec/fiad145", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/femsec/fiad145"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-11-10T00:00:00Z"}}, {"id": "10.1093/femsle/fnaf108", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:25Z", "type": "Journal Article", "created": "2025-10-06", "title": "Effects of compost amendments and experimental drought on grassland soil microbial communities", "description": "Abstract                <p>Prolonged drought is a major stressor for grassland ecosystems. In addition to decreasing plant productivity, it can affect soil microbial activities and thus destabilize nutrient cycling and carbon (C) sequestration. Soil organic amendments (OAs), such as compost, can be used to enhance soil fertility and mitigate drought effects. In this study, we evaluated the responses of fungal and bacterial communities to a 3-year-long experimental drought and compost treatment across four soil depths in two Swedish grasslands and at an upper and a lower topographic position. Results showed that while drought reduced soil moisture and compost amendment increased C content in the topsoil, the effects on microbial abundance and community composition within this time frame were weak, and detectable only in the topsoil. Fungal abundance increased with compost addition, which also affected community composition, while fungal communities were resistant to drought. Bacterial communities were not significantly affected by any of the treatments. This suggests that microbial ecosystem functions were resistant to the experimentally reduced precipitation. Overall, variation between sampling sites was more important for microbial community composition than treatments, highlighting the need for a better understanding of small-spatial-scale environmental controls on soil microbial and plant communities and their ecosystem functions.</p", "keywords": ["Research Article"], "contacts": [{"organization": "Daniela Guasconi, Gustaf Hugelius, Karina E Clemmensen, Sara A O Cousins, Jaanis Juhanson, Stefano Manzoni, Nina Roth, Petra Fransson,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1093/femsle/fnaf108"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/FEMS%20Microbiology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/femsle/fnaf108", "name": "item", "description": "10.1093/femsle/fnaf108", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/femsle/fnaf108"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-01-01T00:00:00Z"}}, {"id": "10.1186/s12916-021-01913-w", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:19:22Z", "type": "Journal Article", "created": "2021-02-11", "title": "High intake of vegetables is linked to lower white blood cell profile and the effect is mediated by the gut microbiome", "description": "Abstract                 Background                 <p>Chronic inflammation, which can be modulated by diet, is linked to high white blood cell counts and correlates with higher cardiometabolic risk and risk of more severe infections, as in the case of COVID-19.</p>                                Methods                 <p>Here, we assessed the association between white blood cell profile (lymphocytes, basophils, eosinophils, neutrophils, monocytes and total white blood cells) as markers of chronic inflammation, habitual diet and gut microbiome composition (determined by sequencing of the 16S RNA) in 986 healthy individuals from the PREDICT-1 nutritional intervention study. We then investigated whether the gut microbiome mediates part of the benefits of vegetable intake on lymphocyte counts.</p>                                Results                 <p>Higher levels of white blood cells, lymphocytes and basophils were all significantly correlated with lower habitual intake of vegetables, with vegetable intake explaining between 3.59 and 6.58% of variation in white blood cells after adjusting for covariates and multiple testing using false discovery rate (q\uffe2\uff80\uff89&lt;\uffe2\uff80\uff890.1). No such association was seen with fruit intake. A mediation analysis found that 20.00% of the effect of vegetable intake on lymphocyte counts was mediated by one bacterial genus, Collinsella, known to increase with the intake of processed foods and previously associated with fatty liver disease. We further correlated white blood cells to other inflammatory markers including IL6 and GlycA, fasting and post-prandial glucose levels and found a significant relationship between inflammation and diet.</p>                                Conclusion                 <p>A habitual diet high in vegetables, but not fruits, is linked to a lower inflammatory profile for white blood cells, and a fifth of the effect is mediated by the genus Collinsella.</p>                                Trial registration                 <p>The ClinicalTrials.gov registration identifier is NCT03479866.</p>", "keywords": ["Adult", "Male", "0301 basic medicine", "610", "Leukocyte Count", "03 medical and health sciences", "RNA", " Ribosomal", " 16S", "Leukocytes", "Humans", "Lymphocyte Count", "White blood cell", " Gut microbiome", " Diet", " Vegetable intake", " Chronic inflammation", "White blood cell", "Clostridium", "2. Zero hunger", "Gut microbiome", "Clostridiales", "0303 health sciences", "Mediation Analysis", "Interleukin-6", "R", "COVID-19", "Chronic inflammation; Diet; Gut microbiome; Vegetable intake; White blood cell", "Chronic inflammation", "General Medicine", "Fasting", "Middle Aged", "Diet", "Gastrointestinal Microbiome", "3. Good health", "Actinobacteria", "Vegetable intake", "Fruit", "Medicine", "Female", "Biomarkers", "Research Article"]}, "links": [{"href": "https://air.unimi.it/bitstream/2434/1101012/2/s12916-021-01913-w.pdf"}, {"href": "https://iris.unitn.it/bitstream/11572/329112/1/s12916-021-01913-w.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1186/s12916-021-01913-w.pdf"}, {"href": "https://doi.org/10.1186/s12916-021-01913-w"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/BMC%20Medicine", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12916-021-01913-w", "name": "item", "description": "10.1186/s12916-021-01913-w", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12916-021-01913-w"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-11T00:00:00Z"}}, {"id": "10.1093/nsr/nwab120", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:27Z", "type": "Journal Article", "created": "2021-06-29", "title": "Significant loss of soil inorganic carbon at the continental scale", "description": "Abstract                <p>Widespread soil acidification due to atmospheric acid deposition and agricultural fertilization may greatly accelerate soil carbonate dissolution and CO2 release. However, to date, few studies have addressed these processes. Here, we use meta-analysis and nationwide-survey datasets to investigate changes in soil inorganic carbon (SIC) stocks in China. We observe an overall decrease in SIC stocks in topsoil (0\uffe2\uff80\uff9330\uffc2\uffa0cm) (11.33\uffc2\uffa0g C m\uffe2\uff80\uff932 yr\uffe2\uff80\uff931) from the 1980s to the 2010s. Total SIC stocks have decreased by \uffe2\uff88\uffbc8.99\uffc2\uffa0\uffc2\uffb1\uffc2\uffa02.24% (1.37\uffc2\uffa0\uffc2\uffb1\uffc2\uffa00.37\uffc2\uffa0Pg C). The average SIC losses across China (0.046 Pg C yr\uffe2\uff80\uff931) and in cropland (0.016 Pg C yr\uffe2\uff80\uff931) account for \uffe2\uff88\uffbc17.6%\uffe2\uff80\uff9324.0% of the terrestrial C sink and 57.1% of the soil organic carbon sink in cropland, respectively. Nitrogen deposition and climate change have profound influences on SIC cycling. We estimate that \uffe2\uff88\uffbc19.12%\uffe2\uff80\uff9319.47% of SIC stocks will be further lost by 2100. The consumption of SIC may offset a large portion of global efforts aimed at ecosystem carbon sequestration, which emphasizes the importance of achieving a better understanding of the indirect coupling mechanisms of nitrogen and carbon cycling and of effective countermeasures to minimize SIC loss.</p", "keywords": ["Carbon sequestration", "Cartography", "China", "Mechanics and Transport in Unsaturated Soils", "Carbonate", "Nitrogen", "Soil Science", "Organic chemistry", "Carbon Dynamics in Peatland Ecosystems", "soil inorganic carbon stocks", "Soil pH", "Environmental science", "Carbon sink", "Agricultural and Biological Sciences", "carbonate", "Engineering", "Soil water", "Soil Carbon Sequestration", "Biology", "global change", "Ecosystem", "Soil acidification", "Civil and Structural Engineering", "Soil science", "2. Zero hunger", "Soil organic matter", "Soil Fertility", "Ecology", "Geography", "Soil Water Retention", "Life Sciences", "Cycling", "Forestry", "Carbon cycle", "04 agricultural and veterinary sciences", "15. Life on land", "Topsoil", "Soil carbon", "Chemistry", "Sink (geography)", "13. Climate action", "FOS: Biological sciences", "Environmental Science", "Physical Sciences", "Environmental chemistry", "0401 agriculture", " forestry", " and fisheries", "soil acidification", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Research Article"]}, "links": [{"href": "https://doi.org/10.1093/nsr/nwab120"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/National%20Science%20Review", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/nsr/nwab120", "name": "item", "description": "10.1093/nsr/nwab120", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/nsr/nwab120"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-07-02T00:00:00Z"}}, {"id": "10.1093/plcell/koac215", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:27Z", "type": "Journal Article", "created": "2022-07-22", "title": "Energy status-promoted growth and development of Arabidopsis require copper deficiency response transcriptional regulator SPL7", "description": "Abstract<p>Copper (Cu) is a cofactor of around 300 Arabidopsis proteins, including photosynthetic and mitochondrial electron transfer chain enzymes critical for adenosine triphosphate (ATP) production and carbon fixation. Plant acclimation to Cu deficiency requires the transcription factor SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE7 (SPL7). We report that in the wild type (WT) and in the spl7-1 mutant, respiratory electron flux via Cu-dependent cytochrome c oxidase is unaffected under both normal and low-Cu cultivation conditions. Supplementing Cu-deficient medium with exogenous sugar stimulated growth of the WT, but not of spl7 mutants. Instead, these mutants accumulated carbohydrates, including the signaling sugar trehalose 6-phosphate, as well as ATP and NADH, even under normal Cu supply and without sugar supplementation. Delayed spl7-1 development was in agreement with its attenuated sugar responsiveness. Functional TARGET OF RAPAMYCIN and SNF1-RELATED KINASE1 signaling in spl7-1 argued against fundamental defects in these energy-signaling hubs. Sequencing of chromatin immunoprecipitates combined with transcriptome profiling identified direct targets of SPL7-mediated positive regulation, including Fe SUPEROXIDE DISMUTASE1 (FSD1), COPPER-DEFICIENCY-INDUCED TRANSCRIPTION FACTOR1 (CITF1), and the uncharacterized bHLH23 (CITF2), as well as an enriched upstream GTACTRC motif. In summary, transducing energy availability into growth and reproductive development requires the function of SPL7. Our results could help increase crop yields, especially on Cu-deficient soils.</p", "keywords": ["Sirolimus", "2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Arabidopsis Proteins", "Arabidopsis", "Trehalose", "NAD", "Chromatin", "Phosphates", "DNA-Binding Proteins", "Electron Transport Complex IV", "Soil", "03 medical and health sciences", "Adenosine Triphosphate", "Gene Expression Regulation", " Plant", "Superoxides", "Growth and Development", "Research Articles", "Copper", "Transcription Factors"]}, "links": [{"href": "https://academic.oup.com/plcell/article-pdf/34/10/3873/46168548/koac215.pdf"}, {"href": "https://doi.org/10.1093/plcell/koac215"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Plant%20Cell", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/plcell/koac215", "name": "item", "description": "10.1093/plcell/koac215", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/plcell/koac215"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-07-22T00:00:00Z"}}, {"id": "10.1186/s12932-020-00066-8", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:19:22Z", "type": "Journal Article", "created": "2020-02-14", "title": "Effects of metal cation substitution on hexavalent chromium reduction by green rust", "description": "Abstract<p>Chromium contamination is a serious environmental issue in areas affected by leather tanning and metal plating, and green rust sulfate has been tested extensively as a potential material for in situ chemical reduction of hexavalent chromium in groundwater. Reported products and mechanisms for the reaction have varied, most likely because of green rust\uffe2\uff80\uff99s layered structure, as reduction at outer and interlayer surfaces might produce different reaction products with variable stabilities. Based on studies of Cr(III) oxidation by biogenic Mn (IV) oxides, Cr mobility in oxic soils is controlled by the solubility of the Cr(III)-bearing phase. Therefore, careful engineering of green rust properties, i.e., crystal/particle size, morphology, structure, and electron availability, is essential for its optimization as a remediation reagent. In the present study, pure green rust sulfate and green rust sulfate with Al, Mg and Zn substitutions were synthesized and reacted with identical chromate (CrO42\uffe2\uff88\uff92) solutions. The reaction products were characterized by X-ray diffraction, pair distribution function analysis, X-ray absorption spectroscopy and transmission electron microscopy and treated with synthetic \uffce\uffb4-MnO2 to assess how easily Cr(III) in the products could be oxidized. It was found that Mg substitution had the most beneficial effect on Cr lability in the product. Less than 2.5% of the Cr(III) present in the reacted Mg-GR was reoxidized by \uffce\uffb4-MnO2 within 14\uffc2\uffa0days, and the particle structure and Cr speciation observed during X-ray scattering and absorption analyses of this product suggested that Cr(VI) was reduced in its interlayer. Reduction in the interlayer lead to the linkage of newly-formed Cr(III) to hydroxyl groups in the adjacent octahedral layers, which resulted in increased structural coherency between these layers, distinctive rim domains, sequestration of Cr(III) in insoluble Fe oxide bonding environments resistant to reoxidation and partial transformation to Cr(III)-substituted feroxyhyte. Based on the results of this study of hexavalent chromium reduction by green rust sulfate and other studies, further improvements can also be made to this remediation technique by reacting chromate with a large excess of green rust sulfate, which provides excess Fe(II) that can catalyze transformation to more crystalline iron oxides, and synthesis of the reactant under alkaline conditions, which has been shown to favor chromium reduction in the interlayer of Fe(II)-bearing phyllosilicates.</p>", "keywords": ["Chromium", "550", "Geography & travel", "Remediation", "02 engineering and technology", "910", "551", "01 natural sciences", "Chromium", " Green rust", " X-ray absorption spectroscopy", " Remediation", "remediation", "500 Naturwissenschaften und Mathematik::550 Geowissenschaften", " Geologie::551 Geologie", " Hydrologie", " Meteorologie", "GE1-350", "info:eu-repo/classification/ddc/910", "QD1-999", "0105 earth and related environmental sciences", "Green rust", "X-ray absorption spectroscopy", "540", "ddc:910", "6. Clean water", "Environmental sciences", "Chemistry", "green rust", "13. Climate action", "chromium", "500 Naturwissenschaften und Mathematik::540 Chemie::540 Chemie und zugeordnete Wissenschaften", "0210 nano-technology", "Research Article"]}, "links": [{"href": "https://eprints.whiterose.ac.uk/158695/1/s12932-020-00066-8.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1186/s12932-020-00066-8.pdf"}, {"href": "https://doi.org/10.1186/s12932-020-00066-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geochemical%20Transactions", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12932-020-00066-8", "name": "item", "description": "10.1186/s12932-020-00066-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12932-020-00066-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-02-14T00:00:00Z"}}, {"id": "10.1093/plcell/koad317", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:27Z", "type": "Journal Article", "created": "2023-12-24", "title": "Root branching under high salinity requires auxin-independent modulation of LATERAL ORGAN BOUNDARY DOMAIN 16 function", "description": "Abstract                <p>Salinity stress constrains lateral root (LR) growth and severely affects plant growth. Auxin signaling regulates LR formation, but the molecular mechanism by which salinity affects root auxin signaling and whether salt induces other pathways that regulate LR development remains unknown. In Arabidopsis thaliana, the auxin-regulated transcription factor LATERAL ORGAN BOUNDARY DOMAIN 16 (LBD16) is an essential player in LR development under control conditions. Here, we show that under high-salt conditions, an alternative pathway regulates LBD16 expression. Salt represses auxin signaling but, in parallel, activates ZINC FINGER OF ARABIDOPSIS THALIANA 6 (ZAT6), a transcriptional activator of LBD16. ZAT6 activates LBD16 expression, thus contributing to downstream cell wall remodeling and promoting LR development under high-salt conditions. Our study thus shows that the integration of auxin-dependent repressive and salt-activated auxin-independent pathways converging on LBD16 modulates root branching under high-salt conditions.</p", "keywords": ["0301 basic medicine", "Salinity", "0303 health sciences", "03 medical and health sciences", "Indoleacetic Acids", "Arabidopsis Proteins", "Gene Expression Regulation", " Plant", "Arabidopsis", "Life Science", "Plant Roots", "Research Article"]}, "links": [{"href": "https://doi.org/10.1093/plcell/koad317"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Plant%20Cell", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/plcell/koad317", "name": "item", "description": "10.1093/plcell/koad317", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/plcell/koad317"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-23T00:00:00Z"}}, {"id": "10.1093/plcell/koae201", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:27Z", "type": "Journal Article", "created": "2024-07-16", "title": "Gibberellin dynamics governing nodulation revealed using GIBBERELLIN PERCEPTION SENSOR 2 in Medicago truncatula lateral organs", "description": "Abstract                <p>During nutrient scarcity, plants can adapt their developmental strategy to maximize their chance of survival. Such plasticity in development is underpinned by hormonal regulation, which mediates the relationship between environmental cues and developmental outputs. In legumes, endosymbiosis with nitrogen-fixing bacteria (rhizobia) is a key adaptation for supplying the plant with nitrogen in the form of ammonium. Rhizobia are housed in lateral root-derived organs termed nodules that maintain an environment conducive to Nitrogenase in these bacteria. Several phytohormones are important for regulating the formation of nodules, with both positive and negative roles proposed for gibberellin (GA). In this study, we determine the cellular location and function of bioactive GA during nodule organogenesis using a genetically encoded second-generation GA biosensor, GIBBERELLIN PERCEPTION SENSOR 2 in Medicago truncatula. We find endogenous bioactive GA accumulates locally at the site of nodule primordia, increasing dramatically in the cortical cell layers, persisting through cell divisions, and maintaining accumulation in the mature nodule meristem. We show, through misexpression of GA-catabolic enzymes that suppress GA accumulation, that GA acts as a positive regulator of nodule growth and development. Furthermore, increasing or decreasing GA through perturbation of biosynthesis gene expression can increase or decrease the size of nodules, respectively. This is unique from lateral root formation, a developmental program that shares common organogenesis regulators. We link GA to a wider gene regulatory program by showing that nodule-identity genes induce and sustain GA accumulation necessary for proper nodule formation.</p", "keywords": ["2. Zero hunger", "Plant Growth Regulators", "Gene Expression Regulation", " Plant", "Medicago truncatula", "Root Nodules", " Plant", "Plants", " Genetically Modified", "Plant Root Nodulation", "Plant Roots", "Gibberellins", "Research Article", "Plant Proteins"]}, "links": [{"href": "https://doi.org/10.1093/plcell/koae201"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Plant%20Cell", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/plcell/koae201", "name": "item", "description": "10.1093/plcell/koae201", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/plcell/koae201"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-07-16T00:00:00Z"}}, {"id": "10.1093/plphys/kiae458", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:27Z", "type": "Journal Article", "created": "2024-08-28", "title": "Leaf Gas Film 1 promotes glycerol ester accumulation and formation of a tight root barrier to radial O2 loss in rice", "description": "Abstract                <p>Rice (Oryza sativa L.) and many other wetland plants form an apoplastic barrier in the outer parts of the roots to restrict radial O2 loss to the rhizosphere during soil flooding. This barrier facilitates longitudinal internal O2 diffusion via gas-filled tissues from shoot to root apices, enabling root growth in anoxic soils. We tested the hypothesis that Leaf Gas Film 1 (LGF1), which influences leaf hydrophobicity in rice, plays a crucial role in tight outer apoplastic barrier formation in rice roots. We examined the roots of a rice mutant (dripping wet leaf 7, drp7) lacking functional LGF1, its wild type, and an LGF1 overexpression line for their capacity to develop outer apoplastic barriers that restrict radial O2 loss. We quantified the chemical composition of the outer part of the root and measured radial O2 diffusion from intact roots. The drp7 mutant exhibited a weak barrier to radial O2 loss compared to the wild type. However, introducing functional LGF1 into the mutant fully restored tight barrier function. The formation of a tight barrier to radial O2 loss was associated with increased glycerol ester levels in exodermal cells, rather than differences in total root suberization or lignification. These results demonstrate that, in addition to its role in leaf hydrophobicity regulation, LGF1 plays an important role in controlling the function of the outer apoplastic barriers in roots. Our study suggests that increased deposition of glycerol esters in the suberized root exodermis establishes a tight barrier to radial O2 loss in rice roots.</p", "keywords": ["Oxygen", "Glycerol", "Plant Leaves", "2. Zero hunger", "0106 biological sciences", "Mutation", "Oryza", "Esters", "15. Life on land", "Plant Roots", "01 natural sciences", "Research Article", "Plant Proteins"]}, "links": [{"href": "https://academic.oup.com/plphys/article-pdf/196/4/2437/60933328/kiae458.pdf"}, {"href": "https://doi.org/10.1093/plphys/kiae458"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/plphys/kiae458", "name": "item", "description": "10.1093/plphys/kiae458", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/plphys/kiae458"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-08-28T00:00:00Z"}}, {"id": "10.1111/gcb.16042", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:46Z", "type": "Journal Article", "created": "2021-12-19", "title": "Stimulation of ammonia oxidizer and denitrifier abundances by nitrogen loading: Poor predictability for increased soil N2O emission", "description": "Abstract<p>Unprecedented nitrogen (N) inputs into terrestrial ecosystems have profoundly altered soil N cycling. Ammonia oxidizers and denitrifiers are the main producers of nitrous oxide (N2O), but it remains unclear how ammonia oxidizer and denitrifier abundances will respond to N loading and whether their responses can predict N\uffe2\uff80\uff90induced changes in soil N2O emission. By synthesizing 101 field studies worldwide, we showed that N loading significantly increased ammonia oxidizer abundance by 107% and denitrifier abundance by 45%. The increases in both ammonia oxidizer and denitrifier abundances were primarily explained by N loading form, and more specifically, organic N loading had stronger effects on their abundances than mineral N loading. Nitrogen loading increased soil N2O emission by 261%, whereas there was no clear relationship between changes in soil N2O emission and shifts in ammonia oxidizer and denitrifier abundances. Our field\uffe2\uff80\uff90based results challenge the laboratory\uffe2\uff80\uff90based hypothesis that increased ammonia oxidizer and denitrifier abundances by N loading would directly cause higher soil N2O emission. Instead, key abiotic factors (mean annual precipitation, soil pH, soil C:N ratio, and ecosystem type) explained N\uffe2\uff80\uff90induced changes in soil N2O emission. Altogether, these findings highlight the need for considering the roles of key abiotic factors in regulating soil N transformations under N loading to better understand the microbially mediated soil N2O emission.</p", "keywords": ["IMPACTS", "0301 basic medicine", "570", "GENES", "Nitrogen", "REGIMES", "Nitrous Oxide", "Precipitation", "Soil pH", "precipitation", "NITRIFICATION", "nitrogen addition", "01 natural sciences", "630", "OXIDE EMISSIONS", "Nitrogen/analysis", "soil pH", "Soil", "03 medical and health sciences", "Ammonia", "FERTILIZATION", "MANAGEMENT", "Nitrous Oxide/analysis", "Biological and chemical processes", "METAANALYSIS", "Research Articles", "Ecosystem", "Soil Microbiology", "0105 earth and related environmental sciences", "Microbial gene abundance", "2. Zero hunger", "biological and chemical processes", "Nitrogen addition", "0303 health sciences", "denitrification", "Nitrous oxide", "nitrous oxide", "15. Life on land", "Nitrification", "nitrification", "6. Clean water", "microbial gene abundance", "13. Climate action", "Denitrification", "COMMUNITIES", "GRASSLANDS"]}, "links": [{"href": "https://doi.org/10.1111/gcb.16042"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.16042", "name": "item", "description": "10.1111/gcb.16042", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.16042"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-12-29T00:00:00Z"}}, {"id": "10.1098/rspa.2017.0745", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:31Z", "type": "Journal Article", "created": "2018-07-11", "title": "Determination of macro-scale soil properties from pore scale structures: image-based modelling of poroelastic structures", "description": "<p>             We show how a combination of X-ray computed tomography (X-CT) and image-based modelling can be used to calculate the effect of moisture content and compaction on the macroscopic structural properties of soil. Our method is based on the equations derived in Daly &amp; Roose (2018             Proc. R. Soc. A             474             , 20170141. (             doi:10.1098/rspa.2017.0141             )), which we have extended so they can be directly applied to the segmented images obtained from X-CT. We assume that the soils are composed of air-filled pore space, solid mineral grains and a mixed phase composed of both clay particles and water. We considered three different initial soil treatments, composed of two different compaction levels and two different moisture contents. We found that the effective properties of the soils were unaffected by compaction over the range tested in this paper. However, changing the moisture content significantly altered the hydraulic and mechanical properties of the soils. A key strength of this method is that it enables the optimization or even design of soils composed from different constituents, with specific mechanical and hydraulic properties.           </p", "keywords": ["0301 basic medicine", "03 medical and health sciences", "550", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Research Articles", "6. Clean water"]}, "links": [{"href": "https://eprints.soton.ac.uk/421320/1/180524_Poro_elastic02_Accepted_Main.pdf"}, {"href": "https://eprints.soton.ac.uk/421320/2/180524_Poro_elastic02_Accepted_Supplementary02.pdf"}, {"href": "https://eprints.soton.ac.uk/421320/3/180524_Poro_elastic02_Accepted_Supplementary01.pdf"}, {"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rspa.2017.0745"}, {"href": "https://doi.org/10.1098/rspa.2017.0745"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20Royal%20Society%20A%3A%20Mathematical%2C%20Physical%20and%20Engineering%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rspa.2017.0745", "name": "item", "description": "10.1098/rspa.2017.0745", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rspa.2017.0745"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-07-01T00:00:00Z"}}, {"id": "10.1111/gcb.16122", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:46Z", "type": "Journal Article", "created": "2022-02-06", "title": "Soil fauna drives vertical redistribution of soil organic carbon in a long\u2010term irrigated dry pine forest", "description": "Abstract<p>Summer droughts strongly affect soil organic carbon (SOC) cycling, but net effects on SOC storage are unclear as drought affects both C inputs and outputs from soils. Here, we explored the overlooked role of soil fauna on SOC storage in forests, hypothesizing that soil faunal activity is particularly drought\uffe2\uff80\uff90sensitive, thereby reducing litter incorporation into the mineral soil and, eventually, long\uffe2\uff80\uff90term SOC storage.</p><p>In a drought\uffe2\uff80\uff90prone pine forest (Switzerland), we performed a large\uffe2\uff80\uff90scale irrigation experiment for 17\uffc2\uffa0years and assessed its impact on vertical SOC distribution and composition. We also examined litter mass loss of dominant tree species using different mesh\uffe2\uff80\uff90size litterbags and determined soil fauna abundance and community composition.</p><p>The 17\uffe2\uff80\uff90year\uffe2\uff80\uff90long irrigation resulted in a C loss in the organic layers (\uffe2\uff88\uff921.0\uffc2\uffa0kg\uffc2\uffa0C\uffc2\uffa0m\uffe2\uff88\uff922) and a comparable C gain in the mineral soil (+0.8\uffc2\uffa0kg\uffc2\uffa0C\uffc2\uffa0m\uffe2\uff88\uff922) and thus did not affect total SOC stocks. Irrigation increased the mass loss ofQuercus pubescensandViburnum lantanaleaf litter, with greater effect sizes when meso\uffe2\uff80\uff90 and macrofauna were included (+215%) than when excluded (+44%). The enhanced faunal\uffe2\uff80\uff90mediated litter mass loss was paralleled by a many\uffe2\uff80\uff90fold increase in the abundance of meso\uffe2\uff80\uff90 and macrofauna during irrigation. Moreover, Acari and Collembola community composition shifted, with a higher presence of drought\uffe2\uff80\uff90sensitive species in irrigated soils. In comparison, microbial SOC mineralization was less sensitive to soil moisture. Our results suggest that the vertical redistribution of SOC with irrigation was mainly driven by faunal\uffe2\uff80\uff90mediated litter incorporation, together with increased root C inputs.</p><p>Our study shows that soil fauna is highly sensitive to natural drought, which leads to a reduced C transfer from organic layers to the mineral soil. In the longer term, this potentially affects SOC storage and, therefore, soil fauna plays a key but so far largely overlooked role in shaping SOC responses to drought.</p", "keywords": ["2. Zero hunger", "550", "carbon cycling", "drought", "litter decomposition", "04 agricultural and veterinary sciences", "Forests", "carbon storage", "15. Life on land", "Pinus", "Carbon", "soil biota", "6. Clean water", "Carbon Cycle", "Soil", "forest", "carbon cycling; carbon storage; climate change; drought; forest; litter decomposition; mesofauna communities; soil biota", "climate change", "mesofauna communities", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Research Articles"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/gcb.16122"}, {"href": "https://doi.org/10.1111/gcb.16122"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/gcb.16122", "name": "item", "description": "10.1111/gcb.16122", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/gcb.16122"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-02-21T00:00:00Z"}}, {"id": "10.1098/rstb.2007.0031", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:31Z", "type": "Journal Article", "created": "2008-02-16", "title": "Drought Effects On Litterfall, Wood Production And Belowground Carbon Cycling In An Amazon Forest: Results Of A Throughfall Reduction Experiment", "description": "<p>             The Amazon Basin experiences severe droughts that may become more common in the future. Little is known of the effects of such droughts on Amazon forest productivity and carbon allocation. We tested the prediction that severe drought decreases litterfall and wood production but potentially has multiple cancelling effects on belowground production within a 7-year partial throughfall exclusion experiment. We simulated an approximately 35\uffe2\uff80\uff9341% reduction in effective rainfall from 2000 through 2004 in a 1\uffe2\uff80\uff8aha plot and compared forest response with a similar control plot. Wood production was the most sensitive component of above-ground net primary productivity (ANPP) to drought, declining by 13% the first year and up to 62% thereafter. Litterfall declined only in the third year of drought, with a maximum difference of 23% below the control plot. Soil CO             2             efflux and its             14             C signature showed no significant treatment response, suggesting similar amounts and sources of belowground production. ANPP was similar between plots in 2000 and declined to a low of 41% below the control plot during the subsequent treatment years, rebounding to only a 10% difference during the first post-treatment year. Live aboveground carbon declined by 32.5\uffe2\uff80\uff8aMg\uffe2\uff80\uff8aha             \uffe2\uff88\uff921             through the effects of drought on ANPP and tree mortality. Results of this unreplicated, long-term, large-scale ecosystem manipulation experiment demonstrate that multi-year severe drought can substantially reduce Amazon forest carbon stocks.           </p>", "keywords": ["0106 biological sciences", "Time Factors", "wood production", "above-ground net primary productivity", "drought", "Medical and Health Sciences", "01 natural sciences", "Trees", "Disasters", "Soil", "Amazon", "litterfall", "global change", "Ecosystem", "2. Zero hunger", "Evolutionary Biology", "Tropical Climate", "Water", "Biological Sciences", "Carbon Dioxide", "15. Life on land", "Wood", "Carbon", "6. Clean water", "13. Climate action", "Research Article"]}, "links": [{"href": "https://escholarship.org/content/qt1b27s752/qt1b27s752.pdf"}, {"href": "https://doi.org/10.1098/rstb.2007.0031"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Philosophical%20Transactions%20of%20the%20Royal%20Society%20B%3A%20Biological%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rstb.2007.0031", "name": "item", "description": "10.1098/rstb.2007.0031", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rstb.2007.0031"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-02-11T00:00:00Z"}}, {"id": "10.1100/tsw.2001.450", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:32Z", "type": "Journal Article", "created": "2005-03-23", "title": "The Impact Of Long-Term Nitrogen Addition On Microbial Community Composition In Three Hawaiian Forest Soils", "description": "<p>We evaluated the microbial communities in three Hawaiian forest soils along a natural fertility gradient and compared their distinct responses to long-term nitrogen (N) additions. The sites studied have the same elevation, climate, and dominant vegetation, but vary in age of development, and thus in soil nutrient availability and nutrient limitation to plant growth. Fertilized plots at each site have received 100 kg ha year-1N addition for at least 8 years. Soil parameters, water content, pH, and ammonium and nitrate availability differed by site, but not between control and N-addition treatments within a site at the time of sampling. Microbial biomass also varied by site, but was not affected by N addition. In contrast, microbial community composition (measured by phospholipid analysis) varied among sites and between control and N-addition plots within a site. These data suggest that microbial community composition responds to N addition even when plant net primary productivity is limited by nutrients other than N. This may have implications for the behavior of forests impacted by atmospheric N deposition that are considered to be \uffe2\uff80\uff9cnitrogen saturated,\uffe2\uff80\uff9d yet still retain N in the soil.</p>", "keywords": ["2. Zero hunger", "Technology", "Tropical Climate", "Bacteria", "Nitrogen", "T", "Science", "Q", "R", "Fungi", "Water", "04 agricultural and veterinary sciences", "15. Life on land", "Hawaii", "6. Clean water", "Time", "Trees", "Soil", "Viruses", "Medicine", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Phospholipids", "Soil Microbiology", "Research Article"], "contacts": [{"organization": "Teri C. Balser", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1100/tsw.2001.450"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Scientific%20World%20JOURNAL", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1100/tsw.2001.450", "name": "item", "description": "10.1100/tsw.2001.450", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1100/tsw.2001.450"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2001-01-01T00:00:00Z"}}, {"id": "10.1100/tsw.2001.90", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-25T16:18:32Z", "type": "Journal Article", "created": "2005-03-23", "title": "Nitrogen Use And Carbon Sequestered By Corn Rotations In The Northern Corn Belt, U.S.", "description": "<p>Diversified crop rotation may improve production efficiency, reduce fertilizer nitrogen (N) requirements for corn (Zea mays L.), and increase soil carbon (C) storage. Objectives were to determine effect of rotation and fertilizer N on soil C sequestration and N use. An experiment was started in 1990 on a Barnes clay loam (U.S. soil taxonomy: fine-loamy, mixed, superactive, frigid Calcic Hapludoll) near Brookings, SD. Tillage systems for corn\uffe2\uff80\uff93soybean (Glycine max [L.] Merr.) rotations were conventional tillage (CS) and ridge tillage (CSr). Rotations under conventional tillage were continuous corn (CC), and a 4-year rotation of corn\uffe2\uff80\uff93soybean\uffe2\uff80\uff93wheat (Triticum aestivum L.) companion-seeded with alfalfa (Medicago sativa L.)\uffe2\uff80\uff93alfalfa hay (CSWA). Additional treatments included plots of perennial warm season, cool season, and mixtures of warm and cool season grasses. N treatments for corn were corn fertilized for a grain yield of 8.5 Mg ha\uffe2\uff80\uff931(highN), of 5.3 Mg ha\uffe2\uff80\uff931(midN), and with no N fertilizer (noN). Total (1990\uffe2\uff80\uff932000) corn grain yield was not different among rotations at 80.8 Mg ha\uffe2\uff80\uff931under highN. Corn yield differences among rotations increased with decreased fertilizer N. Total (1990\uffe2\uff80\uff932000) corn yields with noN fertilizer were 69 Mg ha\uffe2\uff80\uff931under CSWA, 53 Mg ha\uffe2\uff80\uff931under CS, and 35 Mg ha\uffe2\uff80\uff931under CC. Total N attributed to rotations (noN treatments) was 0.68 Mg ha\uffe2\uff80\uff931under CSWA, 0.61 Mg ha\uffe2\uff80\uff931under CS, and 0.28 Mg ha\uffe2\uff80\uff931under CC. Plant carbon return depended on rotation and N. In the past 10 years, total C returned from above- ground biomass was 29.8 Mg ha\uffe2\uff80\uff931under CC with highN, and 12.8 Mg ha\uffe2\uff80\uff931under CSWA with noN. Soil C in the top 15 cm significantly increased (0.7 g kg\uffe2\uff80\uff931) with perennial grass cover, remained unchanged under CSr, and decreased (1.7 g kg\uffe2\uff80\uff931) under CC, CS, and CSWA. C to N ratio significantly narrowed (\uffe2\uff80\uff930.75) with CSWA and widened (0.72) under grass. Diversified rotations have potential to increase N use efficiency and reduce fertilizer N input for corn. However, within a corn production system using conventional tillage and producing (averaged across rotation and N treatment) about 6.2-Mg ha\uffe2\uff80\uff931corn grain per year, we found no gain in soil C after 10 years regardless of rotation.</p>", "keywords": ["Crops", " Agricultural", "2. Zero hunger", "Technology", "Nitrates", "Nitrogen", "T", "Science", "Q", "R", "Agriculture", "04 agricultural and veterinary sciences", "15. Life on land", "Zea mays", "Carbon", "United States", "Time", "Soil", "Medicine", "0401 agriculture", " forestry", " and fisheries", "Research Article"], "contacts": [{"organization": "Thomas E. Schumacher, Merle F. Vigil, Joseph L. Pikul,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1100/tsw.2001.90"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Scientific%20World%20JOURNAL", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1100/tsw.2001.90", "name": "item", "description": "10.1100/tsw.2001.90", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1100/tsw.2001.90"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2001-01-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Research+Article&offset=50&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Research+Article&offset=50&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "prev", "title": "items (prev)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Research+Article&offset=0", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Research+Article&offset=100", "hreflang": "en-US"}], "numberMatched": 433, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-07-25T23:44:09.262135Z"}