{"type": "FeatureCollection", "features": [{"id": "10.1016/j.coisb.2021.100379", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:15:37Z", "type": "Journal Article", "created": "2021-09-09", "title": "Approaches for completing metabolic networks through metabolite damage and repair discovery", "description": "Metabolites are prone to damage, either via enzymatic side reactions, which collectively form the underground metabolism, or via spontaneous chemical reactions. The resulting non-canonical metabolites that can be toxic, are mended by dedicated 'metabolite repair enzymes.' Deficiencies in the latter can cause severe disease in humans, whereas inclusion of repair enzymes in metabolically engineered systems can improve the production yield of value-added chemicals. The metabolite damage and repair loops are typically not yet included in metabolic reconstructions and it is likely that many remain to be discovered. Here, we review strategies and associated challenges for unveiling non-canonical metabolites and metabolite repair enzymes, including systematic approaches based on high-resolution mass spectrometry, metabolome-wide side-activity prediction, as well as high-throughput substrate and phenotypic screens.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", ": Biochemistry", " biophysics & molecular biology [F05] [Life sciences]", ": Biochimie", " biophysique & biologie mol\u00e9culaire [F05] [Sciences du vivant]", "Article"]}, "links": [{"href": "https://doi.org/10.1016/j.coisb.2021.100379"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Current%20Opinion%20in%20Systems%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.coisb.2021.100379", "name": "item", "description": "10.1016/j.coisb.2021.100379", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.coisb.2021.100379"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-12-01T00:00:00Z"}}, {"id": "20.500.11850/688246", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:24Z", "type": "Journal Article", "created": "2024-07-29", "title": "Hydro-pedotransfer functions: a roadmap for future development", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Abstract. Hydro-pedotransfer functions\u00a0(PTFs) relate easy-to-measure and readily available soil information to soil hydraulic properties\u00a0(SHPs) for applications in a wide range of process-based and empirical models, thereby enabling the assessment of soil hydraulic effects on hydrological, biogeochemical, and ecological processes. At least more than 4 decades of research have been invested to derive such relationships. However, while models, methods, data storage capacity, and computational efficiency have advanced, there are fundamental concerns related to the scope and adequacy of current PTFs, particularly when applied to parameterise models used at the field scale and beyond. Most of the PTF development process has focused on refining and advancing the regression methods, while fundamental aspects have remained largely unconsidered. Most soil systems are not represented in PTFs, which have been built mostly for agricultural soils in temperate climates. Thus, existing PTFs largely ignore how parent material, vegetation, land use, and climate affect processes that shape SHPs. The PTFs used to parameterise the Richards\u2013Richardson equation are mostly limited to predicting parameters of the van\u00a0Genuchten\u2013Mualem soil hydraulic functions, despite sufficient evidence demonstrating their shortcomings. Another fundamental issue relates to the diverging scales of derivation and application, whereby PTFs are derived based on laboratory measurements while often being applied at the field to regional scales. Scaling, modulation, and constraining strategies exist to alleviate some of these shortcomings in the mismatch between scales. These aspects are addressed here in a joint effort by the members of the International Soil Modelling Consortium\u00a0(ISMC) Pedotransfer Functions Working Group with the aim of systematising PTF research and providing a roadmap guiding both PTF development and use. We close with a 10-point catalogue for funders and researchers to guide review processes and research.</p></article>", "keywords": ["Technology", "550", "Bodenanalyse", "Modell", "SPHAGNUM MOSS", "Environmental technology. Sanitary engineering", "630", "Ing\u00e9nierie", " informatique & technologie", "Biogeochemical process", "Earth and Planetary Sciences (miscellaneous)", "Geography. Anthropology. Recreation", "GE1-350", "SATURATED HYDRAULIC CONDUCTIVITY", "Geosciences", " Multidisciplinary", "TD1-1066", "Water Science and Technology", "2. Zero hunger", "T", "Geology", "Hydraulics effects", "Agriculture & agronomy", "Life sciences", "Daten", "Pedo-transfer functions", "6. Clean water", "Soil hydraulics", "REFLECTANCE SPECTROSCOPY", "Roadmap", "Physical Sciences", "Sciences du vivant", "Water Resources", "SOIL-WATER-RETENTION", "0406 Physical Geography and Environmental Geoscience", "3709 Physical geography and environmental geoscience", "Process-based modeling", "Environmental Engineering", "Physique", " chimie", " math\u00e9matiques & sciences de la terre", "PHYSICAL-PROPERTIES", "SENSITIVITY-ANALYSIS", "Soil hydraulic properties", "0905 Civil Engineering", "333", "G", "Physical", " chemical", " mathematical & earth Sciences", "Empirical model", "Agriculture & agronomie", "Life Science", "UNSATURATED CONDUCTIVITY", "SEASONAL-CHANGES", "Pedotransfer functions", "HYSTERETIC MOISTURE PROPERTIES", "info:eu-repo/classification/ddc/550", "Science & Technology", "3707 Hydrology", "Physikochemische Bodeneigenschaft", "500", "15. Life on land", "Engineering", " computing & technology", "Sciences de la terre & g\u00e9ographie physique", "Environmental sciences", "0907 Environmental Engineering", "13. Climate action", "ITC-ISI-JOURNAL-ARTICLE", "Earth sciences & physical geography", "HETEROGENEOUS SOILS", "4013 Geomatic engineering", "ITC-GOLD", "Hydrological process"]}, "links": [{"href": "https://orbi.uliege.be/bitstream/2268/321088/1/hess-28-3391-2024.pdf"}, {"href": "https://hess.copernicus.org/articles/28/3391/2024/hess-28-3391-2024.pdf"}, {"href": "https://doi.org/20.500.11850/688246"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Hydrology%20and%20Earth%20System%20Sciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "20.500.11850/688246", "name": "item", "description": "20.500.11850/688246", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/20.500.11850/688246"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-07-29T00:00:00Z"}}, {"id": "2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/333899", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:29Z", "type": "Journal Article", "created": "2017-07-19", "title": "Application of Mycorrhiza and Soil from a Permaculture System Improved Phosphorus Acquisition in Naranjilla", "description": "Naranjilla (Solanum quitoense) is a perennial shrub plant mainly cultivated in Ecuador, Colombia, and Central America where it represents an important cash crop. Current cultivation practices not only cause deforestation and large-scale soil degradation but also make plants highly susceptible to pests and diseases. The use of arbuscular mycorrhizal fungi (AMF) can offer a possibility to overcome these problems. AMF can act beneficially in various ways, for example by improving plant nutrition and growth, water relations, soil structure and stability and protection against biotic and abiotic stresses. In this study, the impact of AMF inoculation on growth and nutrition parameters of naranjilla has been assessed. For inoculation three European reference AMF strains (Rhizoglomus irregulare, Claroideoglomus claroideum, and Cetraspora helvetica) and soils originating from three differently managed naranjilla plantations in Ecuador (conventional, organic, and permaculture) have been used. This allowed for a comparison of the performance of exotic AMF strains (reference strains) versus native consortia contained in the three soils used as inocula. To study fungal communities present in the three soils, trap cultures have been established using naranjilla as host plant. The community structures of AMF and other fungi inhabiting the roots of trap cultured naranjilla were assessed using next generation sequencing (NGS) methods. The growth response experiment has shown that two of the three reference AMF strains, a mixture of the three and soil from a permaculture site led to significantly better acquisition of phosphorus (up to 104%) compared to uninoculated controls. These results suggest that the use of AMF strains and local soils as inoculants represent a valid approach to improve nutrient uptake efficiency of naranjilla and consequently to reduce inputs of mineral fertilizers in the cultivation process. Improved phosphorus acquisition after inoculation with permaculture soil might have been caused by a higher abundance of AMF and the presence of Piriformospora indica as revealed by NGS. A higher frequency of AMF and enhanced root colonization rates in the trap cultures supplemented with permaculture soil highlight the importance of diverse agricultural systems for soil quality and crop production.", "keywords": ["next generation sequencing", "0301 basic medicine", "2. Zero hunger", "permaculture", "0303 health sciences", "Piriformospora indica", "Plant culture", "naranjilla", "arbuscular mycorrhizal fungi", "Plant Science", "15. Life on land", "fungal communities", "Life sciences", "SB1-1110", "Biologie v\u00e9g\u00e9tale (sciences v\u00e9g\u00e9tales", " sylviculture", " mycologie...)", "03 medical and health sciences", "Sciences du vivant", "naranjilla", " arbuscular mycorrhizal fungi", " fungal communities", " Piriformospora indica", " farming practices", " permaculture", " next generation sequencing", "farming practices", "Phytobiology (plant sciences", " forestry", " mycology...)", "Sciences exactes et naturelles"]}, "links": [{"href": "https://orbi.uliege.be/bitstream/2268/290284/1/Symanczik%20et%20al%202017.pdf"}, {"href": "https://dipot.ulb.ac.be/dspace/bitstream/2013/333899/1/doi_317543.pdf"}, {"href": "https://doi.org/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/333899"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/333899", "name": "item", "description": "2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/333899", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/333899"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-07-19T00:00:00Z"}}, {"id": "2164/6134", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:37Z", "type": "Journal Article", "created": "2016-05-13", "title": "Modeling Soil Processes: Review, Key Challenges, and New Perspectives", "description": "Core Ideas                     <p>                                                                           <p>A community effort is needed to move soil modeling forward.</p>                                                                             <p>Establishing an international soil modeling consortium is key in this respect.</p>                                                                             <p>There is a need to better integrate existing knowledge in soil models.</p>                                                                             <p>Integration of data and models is a key challenge in soil modeling.</p>                                                                     </p>                     <p>The remarkable complexity of soil and its importance to a wide range of ecosystem services presents major challenges to the modeling of soil processes. Although major progress in soil models has occurred in the last decades, models of soil processes remain disjointed between disciplines or ecosystem services, with considerable uncertainty remaining in the quality of predictions and several challenges that remain yet to be addressed. First, there is a need to improve exchange of knowledge and experience among the different disciplines in soil science and to reach out to other Earth science communities. Second, the community needs to develop a new generation of soil models based on a systemic approach comprising relevant physical, chemical, and biological processes to address critical knowledge gaps in our understanding of soil processes and their interactions. Overcoming these challenges will facilitate exchanges between soil modeling and climate, plant, and social science modeling communities. It will allow us to contribute to preserve and improve our assessment of ecosystem services and advance our understanding of climate\uffe2\uff80\uff90change feedback mechanisms, among others, thereby facilitating and strengthening communication among scientific disciplines and society. We review the role of modeling soil processes in quantifying key soil processes that shape ecosystem services, with a focus on provisioning and regulating services. We then identify key challenges in modeling soil processes, including the systematic incorporation of heterogeneity and uncertainty, the integration of data and models, and strategies for effective integration of knowledge on physical, chemical, and biological soil processes. We discuss how the soil modeling community could best interface with modern modeling activities in other disciplines, such as climate, ecology, and plant research, and how to weave novel observation and measurement techniques into soil models. We propose the establishment of an international soil modeling consortium to coherently advance soil modeling activities and foster communication with other Earth science disciplines. Such a consortium should promote soil modeling platforms and data repository for model development, calibration and intercomparison essential for addressing contemporary challenges.</p>", "keywords": ["organic-matter dynamics", "550", "Sciences de l\u2019environnement & \u00e9cologie", "QH301 Biology", "Knowledge management", "0208 environmental biotechnology", "ECOSYSTEM SERVICES", "02 engineering and technology", "soil processes", "01 natural sciences", "Physical Geography and Environmental Geoscience", "Sciences de la Terre", "Biological process", "ANZSRC::3707 Hydrology", "DROUGHT SEVERITY INDEX", "SYNTHETIC-APERTURE RADAR", "ANZSRC::4106 Soil sciences", "SDG 13 - Climate Action", "Climate change", "0503 Soil Sciences", "GROUND-PENETRATING RADAR", "Integration of knowledge", "Life sciences", "ANZSRC::050399 Soil Sciences not elsewhere classified", "synthetic-aperture radar", "Physical Sciences", "Water Resources", "Knowledge and experience", "MULTIPLE ECOSYSTEM SERVICES", "knowledge integration", "570", "DIFFUSE-REFLECTANCE SPECTROSCOPY", "Environmental Engineering", "Physique", " chimie", " math\u00e9matiques & sciences de la terre", "Scientific discipline", "0703 Crop and Pasture Production", "0207 environmental engineering", "Soil Science", "soil science", "ORGANIC-MATTER DYNAMICS", "DATA ASSIMILATION", "Physical", " chemical", " mathematical & earth Sciences", "ANZSRC::0503 Soil Sciences", "Science disciplines", "PEDOTRANSFER FUNCTIONS", "Feedback mechanisms", "mod\u00e9lisation", "ground-penetrating radar", "Science & Technology", "ANZSRC::080110 Simulation and Modelling", "15. Life on land", "Sciences de la terre & g\u00e9ographie physique", "multiple ecosystem services", "root water-uptake", "Observation and measurement", "DIGITAL ELEVATION MODEL", "Quality of predictions", "SATURATED-UNSATURATED FLOW", "ARBUSCULAR MYCORRHIZAL FUNGI", "sciences du sol", "HYDRAULIC-PROPERTIES", "2. Zero hunger", "Agriculture", "diffuse-reflectance spectroscopy", "4106 Soil sciences", "ORGANIC-MATTER", "digital elevation model", "SDG 13 \u2013 Ma\u00dfnahmen zum Klimaschutz", "Sciences du vivant", "Uncertainty analysis", "0406 Physical Geography and Environmental Geoscience", "Life Sciences & Biomedicine", "Crop and Pasture Production", "101028 Mathematical modelling", "international soil modeling consortium", "[SDU.STU]Sciences of the Universe [physics]/Earth Sciences", "Environmental Sciences & Ecology", "arbuscular mycorrhizal fungi", "Ecosystems", "Climate models", "QH301", "Environmental sciences & ecology", "Life Science", "SEDIMENT TRANSPORT MODELS", "data integration", "sediment transport models", "approche ecosyst\u00e9mique", "0105 earth and related environmental sciences", "info:eu-repo/classification/ddc/550", "3707 Hydrology", "soil modeling", "ROOT WATER-UPTAKE", "SOLUTE TRANSPORT", "13. Climate action", "Earth and Environmental Sciences", "Soil Sciences", "[SDU.STU] Sciences of the Universe [physics]/Earth Sciences", "Earth Sciences", "Earth sciences & physical geography", "Soils", "101028 Mathematische Modellierung", "saturated-unsaturated flow", "Environmental Sciences", "root water-uptake", " sediment transport models", " diffuse-reflectance spectroscopy", " arbuscular mycorrhizal fungi", " multiple ecosystem services", " saturated-unsaturated flow", " ground-penetrating radar", " synthetic-aperture radar", " digital elevation model", " organic-matter dynamics."]}, "links": [{"href": "https://orbi.uliege.be/bitstream/2268/263634/1/Vereecken%20VZJ%202016.pdf"}, {"href": "http://onlinelibrary.wiley.com/wol1/doi/10.2136/vzj2015.09.0131/fullpdf"}, {"href": "https://escholarship.org/content/qt6976n34c/qt6976n34c.pdf"}, {"href": "https://doi.org/2164/6134"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Vadose%20Zone%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2164/6134", "name": "item", "description": "2164/6134", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2164/6134"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-05-01T00:00:00Z"}}, {"id": "2268/239471", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:39Z", "type": "Report", "title": "Analysing N sources and transformation processes in groundwater under agricultural areas (chalk aquifer, Belgium)", "description": "Transfer of GHGs in the soil \u2013 vadose zone \u2013 groundwater \u2013 river \u2013 atmosphere system", "keywords": ["Sciences de l\u2019environnement & \u00e9cologie", "Physique", " chimie", " math\u00e9matiques & sciences de la terre", "Life sciences", "6. Clean water", "Geological", " petroleum & mining engineering", "Engineering", " computing & technology", "Ing\u00e9nierie", " informatique & technologie", "Sciences de la terre & g\u00e9ographie physique", "Physical", " chemical", " mathematical & earth Sciences", "13. Climate action", "Environmental sciences & ecology", "Earth sciences & physical geography", "Sciences du vivant", "G\u00e9ologie", " ing\u00e9nierie du p\u00e9trole & des mines"], "contacts": [{"organization": "Nikolenko, Olha, Borges, Alberto, Orban, Philippe, Brouy\u00e8re, Serge,", "roles": ["creator"]}]}, "links": [{"href": "https://orbi.uliege.be/bitstream/2268/239471/1/INSPIRATIONBulletin.pdf"}, {"href": "https://doi.org/2268/239471"}, {"rel": "self", "type": "application/geo+json", "title": "2268/239471", "name": "item", "description": "2268/239471", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2268/239471"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-09-01T00:00:00Z"}}, {"id": "2268/252074", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:39Z", "type": "Other", "title": "Effects of the hydrogeochemical stratification on the distribution of GHGs concentrations and their production/consumption processes in groundwater", "description": "RestrictedRegulation of the concentrations of greenhouse gases (GHGs) in the environment has become one of the major challenges faced by global community. In order to understand better which measures could be applied to stop the rising concentrations of N2O, CO2 and CH4 in the atmosphere, it is important to better constrain their budgets. Research findings, devoted to the study of GHGs fluxes, have reported that under agricultural areas groundwater is generally characterized with increased concentrations of N2O due to microbial conversion of N compounds derived from the application of organic and inorganic fertilizers. Previous investigations performed in the Cretaceous Hesbaye chalk aquifer in Eastern Belgium have characterized the variability of GHGs along the lateral and vertical dimensions of the aquifer taking into account the difference in hydrogeochemistry, hydrogeology and urbanization level. Results obtained from the interpretations of NO3-, N2O, SO42-, B isotopes signatures and N2O isotopomers suggested that the dynamics of N2O in the chalk aquifer was governed by different, possibly overlapping reaction mechanisms such as nitrification, denitrification or nitrifier-denitrification. They also revealed the occurrence of CH4 in oxic conditions simultaneously with electron acceptors of higher energy yield. In order to understand the mechanisms governing the observed trends in GHGs concentrations, local scale investigations have been planified to better constrict the conditions of occurrence of GHGs transformation processes and disentangle their shifting dynamics. In this context, low-flow groundwater sampling procedures were applied at different depth intervals to obtain better insight into the possible vertical extent of oxic and anoxic zones, occurrence of biogeochemical processes typically active in these zones and accumulation of GHGs in different hydrogeochemical conditions. Afterwards, series of push-pull tests, using NO3- and NH4+ compounds labeled with heavy 15N isotope were conducted to quantify the rates of nitrification and denitrification processes. Such studies help to clarify which conditions are more prone to the accumulation of high concentrations of GHGs in aquifers and better constrain the mass-balance models of GHGs production/consumption in groundwater.", "keywords": ["2. Zero hunger", "Sciences aquatiques & oc\u00e9anologie", "13. Climate action", "Sciences du vivant", "Aquatic sciences & oceanology", "Greenhouse gases (GHGs)", "15. Life on land", "N isotopes", "Groundwater", "Life sciences", "6. Clean water"], "contacts": [{"organization": "Nikolenko, Olha, Orban, Philippe, Morana, C\u00e9dric, Borges, Alberto, Jamin, Pierre, Brouy\u00e8re, Serge,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/2268/252074"}, {"rel": "self", "type": "application/geo+json", "title": "2268/252074", "name": "item", "description": "2268/252074", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2268/252074"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-09-01T00:00:00Z"}}, {"id": "2268/223849", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:39Z", "type": "Other", "title": "Biogeochemistry of greenhouse gases in groundwater under agricultural area (the Geer catchment, Belgium)", "keywords": ["Sciences de l\u2019environnement & \u00e9cologie", "Physique", " chimie", " math\u00e9matiques & sciences de la terre", "N2O", "Life sciences", "Geological", " petroleum & mining engineering", "Engineering", " computing & technology", "Sciences de la terre & g\u00e9ographie physique", "Ing\u00e9nierie", " informatique & technologie", "Physical", " chemical", " mathematical & earth Sciences", "Environmental sciences & ecology", "greenhouse gases", "groundwater", "Earth sciences & physical geography", "Sciences du vivant", "G\u00e9ologie", " ing\u00e9nierie du p\u00e9trole & des mines"], "contacts": [{"organization": "Nikolenko, Olha, Orban, Philippe, Jamin, Pierre, Jurado, Anna, Borges, Alberto, Brouy\u00e8re, Serge,", "roles": ["creator"]}]}, "links": [{"href": "https://orbi.uliege.be/bitstream/2268/223849/1/EGU2018-16102-2.pdf"}, {"href": "https://doi.org/2268/223849"}, {"rel": "self", "type": "application/geo+json", "title": "2268/223849", "name": "item", "description": "2268/223849", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2268/223849"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-04-07T00:00:00Z"}}, {"id": "2268/224877", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:39Z", "type": "Journal Article", "created": "2018-05-03", "title": "Noninvasive Imaging of Processes in Natural Porous Media: From Pore to Field Scale", "description": "Core Ideas                     <p>                                                                           <p>Noninvasive, high\uffe2\uff80\uff90resolution imaging is important for visualizing water flow and transport processes.</p>                                                                             <p>Most important are X\uffe2\uff80\uff90ray CT, MRI, and neutron CT.</p>                                                                             <p>Image processing techniques are mandatory for maximum benefit from the images.</p>                                                                     </p>                     <p>                       Noninvasive, high\uffe2\uff80\uff90resolution imaging techniques are important for visualizing water flow and transport processes in soils, which are natural porous media. They are a key to understanding effects such as crop production, water resource restoration, CO                       2                       sequestration, or the transport and fate of pollutants. During the last two decades, the development of three\uffe2\uff80\uff90dimensional imaging techniques such as nuclear magnetic resonance imaging (NMR and MRI), X\uffe2\uff80\uff90ray computed tomography (CT), and neutron CT has made significant progress possible in the study of soil processes. This special section presents examples of X\uffe2\uff80\uff90ray CT and NMR from the small\uffe2\uff80\uff90column scale to the application of portable NMR equipment in the field, along with some important advances in image processing that make it possible to extract optimal physical information from the original data.                     </p>", "keywords": ["2. Zero hunger", "QE1-996.5", "info:eu-repo/classification/ddc/550", "550", "Sciences de l\u2019environnement & \u00e9cologie", "0208 environmental biotechnology", "0207 environmental engineering", "Geology", "02 engineering and technology", "Life sciences", "6. Clean water", "Environmental sciences", "13. Climate action", "Environmental sciences & ecology", "Sciences du vivant", "GE1-350"]}, "links": [{"href": "https://orbi.uliege.be/bitstream/2268/224877/1/vzj-17-1-180044.pdf"}, {"href": "https://eprints.soton.ac.uk/421128/1/vzj_17_1_180044.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.2136/vzj2018.03.0044"}, {"href": "https://doi.org/2268/224877"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Vadose%20Zone%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2268/224877", "name": "item", "description": "2268/224877", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2268/224877"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-01-01T00:00:00Z"}}, {"id": "2268/227432", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:39Z", "type": "Other", "title": "Dynamics of nitrous oxide in groundwater under agricultural areas: insights from multi-isotopic studies (15N, 34S, 18O, 13C, 3H)", "description": "Open AccessTransfer of GHGs in the soil \u2013 vadose zone \u2013 groundwater \u2013 river \u2013 atmosphere system", "keywords": ["Sciences aquatiques & oc\u00e9anologie", "Sciences de l\u2019environnement & \u00e9cologie", "Environmental sciences & ecology", "groundwater", "Sciences du vivant", "Aquatic sciences & oceanology", "Life sciences", "isotopes", "agriculture"], "contacts": [{"organization": "Nikolenko, Olha, Orban, Philippe, Jurado, Anna, Borges, Alberto, Brouy\u00e8re, Serge,", "roles": ["creator"]}]}, "links": [{"href": "https://orbi.uliege.be/bitstream/2268/227432/1/abstract.pdf"}, {"href": "https://doi.org/2268/227432"}, {"rel": "self", "type": "application/geo+json", "title": "2268/227432", "name": "item", "description": "2268/227432", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2268/227432"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-04-20T00:00:00Z"}}, {"id": "2268/262547", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:39Z", "type": "Journal Article", "created": "2021-03-18", "title": "Dynamics of nitrous oxide with depth in groundwater: Insights from ambient groundwater and laboratory incubation experiments (Hesbaye chalk aquifer, Belgium)", "description": "Aquifers under agricultural areas are considered to be an indirect source of nitrous oxide emission (N2O) to the atmosphere, which is the greenhouse gas (GHGs) characterized with the highest global warning potential and acts as a stratospheric ozone depletion agent. Previous investigations performed in the Cretaceous Hesbaye chalk aquifer in Eastern Belgium suggested that the dynamics of N2O in the aquifer is controlled by overlapping biochemical processes such as nitrification and denitrification. The current study aims to obtain better insight concerning the factors controlling the distribution of N2O concentration along a vertical dimension in the aquifer, and to capture and quantify the occurrence of nitrification and denitrification processes in the groundwater system. Low-flow groundwater sampling technique was undertaken at different depths in the aquifer to collect groundwater samples aiming at obtaining information about ambient aquifer hydrogeochemical conditions and their effect on the accumulation of GHGs. Afterwards, laboratory stable isotope experiments, using NO3- and NH4+ compounds labeled with heavy 15N isotope, were applied to quantify the rates of nitrification and denitrification processes. Ambient studies suggest that the occurrence of N transformation was related to denitrification while laboratory incubation experiments did not detect it. Such controversial results might be explained by the discrepancy between real aquifer conditions and lab design studies. Thus, additional in situ tracer experiments should be carried out in areas where natural groundwater fluxes do not flush the injected tracer too rapidly. In addition, it would be useful to conduct microbiological studies to obtain better insight into the nature of subsurface biofilm biotope.", "keywords": ["Sciences aquatiques & oc\u00e9anologie", "Physique", " chimie", " math\u00e9matiques & sciences de la terre", "Nitrous Oxide", "01 natural sciences", "Low-flow sampling", "Ing\u00e9nierie", " informatique & technologie", "Calcium Carbonate", "Physical", " chemical", " mathematical & earth Sciences", "Belgium", "Groundwater", "0105 earth and related environmental sciences", "2. Zero hunger", "Aquatic sciences & oceanology", "N stable isotope analysis", "Life sciences", "Nitrification", "Geological", " petroleum & mining engineering", "6. Clean water", "Engineering", " computing & technology", "Sciences de la terre & g\u00e9ographie physique", "Greenhouse gases", "13. Climate action", "Earth sciences & physical geography", "Sciences du vivant", "Denitrification", "G\u00e9ologie", " ing\u00e9nierie du p\u00e9trole & des mines", "Laboratories"]}, "links": [{"href": "https://orbi.uliege.be/bitstream/2268/262547/2/Dynamics%20of%20nitrous%20oxide%20with%20depth%20in%20groundwater%20insights%20from%20ambient%20groundwater.pdf"}, {"href": "https://doi.org/2268/262547"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Contaminant%20Hydrology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2268/262547", "name": "item", "description": "2268/262547", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2268/262547"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-08-01T00:00:00Z"}}, {"id": "2268/319017", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:39Z", "type": "Report", "created": "2024-02-02", "title": "Potential alternative land covers on Earth", "description": "<title>Abstract</title>         <p>Preserving and restoring terrestrial ecosystems is crucial to halting the collapse of life on Earth. To guide global conservation and restoration efforts, we present a comprehensive map, encompassing all ecosystems, revealing the Earth's potential tree, short vegetation, and bareground cover accounting for various land management scenarios such as prescribed fire frequency and trophic rewilding. Our analysis indicates that 43% (5678 Mha) of lands could be covered by trees, 39% (5179 Mha) by shrubs and grasses, and 18% (2347 Mha) by bareground. Approximately 1070 Mha can support alternative land covers, emphasizing the need to consider diverse outcomes in landscape restoration. Our findings also suggest that management scenarios may significantly outweigh the average impact of climate change on resulting land covers, underscoring decision-makers' responsibility for nature\u2019s recovery and a sustainable future.</p>", "keywords": ["Sciences de l\u2019environnement & \u00e9cologie", "13. Climate action", "Environmental sciences & ecology", "Sciences du vivant", "15. Life on land", "Life sciences"]}, "links": [{"href": "https://orbi.uliege.be/bitstream/2268/319017/1/f0711918-32be-409c-b64c-08360e4632ff.pdf"}, {"href": "https://doi.org/2268/319017"}, {"rel": "self", "type": "application/geo+json", "title": "2268/319017", "name": "item", "description": "2268/319017", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2268/319017"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-02-02T00:00:00Z"}}, {"id": "2268/333642", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:39Z", "type": "Report", "created": "2024-10-17", "title": "Cis-regulatory mutations co-opting circadian clock regulation underlie naturally selected extreme trait inArabidopsis halleri", "description": "Abstract<p>HEAVY METAL ATPase 4(HMA4) is required for the naturally selected traits of zinc/cadmium hyperaccumulation and hypertolerance of inArabidopsis halleri.Cis-regulatory alterations and tandem triplication ofAhHMA4result in substantially elevated transcript levels compared to the closely related non-tolerant non-hyperaccumulatorArabidopsis thaliana. Here we identifycis-regulatory Metal Hyperaccumulation Elements (MHEs) necessary forAhHMA4promoter activity, employing sequence comparisons and motif elicitation analyses combined with progressive deletions and site-directed mutagenesis of promoter-reporter constructs. We report that the promoters of allAhHMA4gene copies share a distal MHE1 (consensus TGTAAC), and a proximal pair of MHE2s identical or highly similar to the Evening Element (AAAATATCT). Evening elements are known binding sites of Arabidopsis CIRCADIAN CLOCK-ASSOCIATED 1 (CCA1), a phytochrome-regulated transcription factor in the core circadian clock. We show that the promoter of eachAhHMA4gene copy, but not ofAtHMA4, mediates enhanced transcript levels of the reporter and their diel rhythmicity. These functional characteristics areCCA1-dependent and recapitulated by a synthetic reporter construct placing the MHE2 pair into theAtHMA4-promoter sequence context, according to the example of theAhHMA4-1promoter. Consistent with our observations in transgenic reporter lines,AhHMA4transcript levels follow a diel rhythm in wild-typeA. halleriplants. Different fromA. halleri, we identify complex repressive functionalities co-localizing with an upstream lncRNA and an intron in the 5\uffe2\uff80\uff99 untranslated region ofA. thaliana HMA4. In summary, our work exemplifies howcis-regulatory mutations contributed to the evolution of extreme physiological traits through the co-option of the circadian clock regulatory network.</p", "keywords": ["Biologie v\u00e9g\u00e9tale (sciences v\u00e9g\u00e9tales", " sylviculture", " mycologie...)", "Sciences du vivant", "Life sciences", "Phytobiology (plant sciences", " forestry", " mycology...)"]}, "links": [{"href": "https://orbi.uliege.be/bitstream/2268/333642/1/2024.10.14.618290v1.full%281%29.pdf"}, {"href": "https://doi.org/2268/333642"}, {"rel": "self", "type": "application/geo+json", "title": "2268/333642", "name": "item", "description": "2268/333642", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2268/333642"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-10-17T00:00:00Z"}}, {"id": "2268/334374", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:39Z", "type": "Journal Article", "created": "2025-07-16", "title": "Global alternatives of natural vegetation cover", "description": "Preserving and restoring terrestrial ecosystems is essential to preventing the decline of life on Earth. To guide global conservation efforts, we present a detailed counterfactual map showing Earth\u2019s natural tree, short vegetation, and bare ground cover. This map accounts for environmental filtering along with realistic scenarios of fire frequency and wildlife herbivory. The most likely scenario suggests 43% (5669\u2009\u00b1\u200974 Mha) of land could support trees, 39% (5183\u2009\u00b1\u200986 Mha) shrubs and grasses, and 18% (2352\u2009\u00b1\u200959 Mha) bare ground. Adjustments in fire and herbivory could shift a minimum of 675 Mha of land, stressing the importance of considering alternative outcomes when restoring a landscape. Our findings also suggest that adjustments in fire frequency and wildlife herbivory could have a greater impact on natural vegetation than expected climate changes by 2050, highlighting decision-makers\u2019 responsibility to guide\u00a0conservation and restoration toward a sustainable and biodiverse future.", "keywords": ["Sciences de l\u2019environnement & \u00e9cologie", "Environmental sciences & ecology", "Sciences du vivant", "Life sciences", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "Article"]}, "links": [{"href": "https://orbi.uliege.be/bitstream/2268/334374/1/Bastin%20%282025%29%20-%20Global%20alternative%20of%20vegetation%20cover.pdf"}, {"href": "https://doi.org/2268/334374"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Communications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2268/334374", "name": "item", "description": "2268/334374", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2268/334374"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-07-16T00:00:00Z"}}, {"id": "2268/336516", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:25:39Z", "type": "Journal Article", "created": "2025-10-04", "title": "Cis-regulatory elements co-opting core circadian clock regulator CCA1 underlie enhanced expression of HMA4 for metal hyperaccumulation in Arabidopsis halleri", "description": "The naturally selected extreme traits of zinc/cadmium hyperaccumulation and hypertolerance in Arabidopsis halleri depend on strongly elevated HEAVY METAL ATPase 4 (HMA4) transcript levels compared to the closely related Arabidopsis thaliana. This is governed in cis, meaning that upstream AhHMA4 sequences are sufficient, as previously demonstrated using reporter gene fusions stably introduced into both A. halleri and A. thaliana. However, the underlying cis-regulatory mutations specific to A. halleri have remained unknown. Here we identify cis-regulatory Metal Hyperaccumulation Elements (MHE) that contribute to the increased activity of the promoters of the three tandem AhHMA4 gene copies by examining lines stably transformed with deletion and mutant variants of reporter constructs. MHE1 (consensus TGTAAC) functions in distal regions of AhHMA4 promoters, and all three AhHMA4 gene copies share a proximal upstream pair of MHE2 (consensus AAATATCT, Evening Element, EE). The EE is a known target of Arabidopsis CIRCADIAN CLOCK-ASSOCIATED 1 (CCA1), a transcription factor that mediates light-regulated gene expression and operates in the circadian clock. We show that the elevated activity of the AhHMA4-1 promoter depends on MHE2 in cis and CCA1 in trans, and it is recapitulated by site-directed mutagenesis generating an intact pair of MHE2 in the A. thaliana HMA4 promoter sequence. HMA4 transcript levels show diel rhythmicity in A. halleri but not A. thaliana. In summary, we identify the causal cis-regulatory elements which underlie enhanced HMA4 transcript levels critical for a naturally selected extreme trait syndrome and function by co-opting a regulator of diel and seasonal transcriptional rhythms.", "keywords": ["Biologie v\u00e9g\u00e9tale (sciences v\u00e9g\u00e9tales", " sylviculture", " mycologie...)", "enhancing elements", "Sciences du vivant", "REVEILLE (RVE)", "evolutionary novelty", "cis-regulatory divergence", "metal hypertolerance", "Life sciences", "Phytobiology (plant sciences", " forestry", " mycology...)", "metal hyperaccumulation"], "contacts": [{"organization": "Castanedo, Leonardo, Cebula, Justyna, Nouet, C\u00e9cile, Spielmann, Julien, Janina, Nede\u017eda, Hanikenne, Marc, Kr\u00e4mer, Ute,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/2268/336516"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Communications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2268/336516", "name": "item", "description": "2268/336516", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2268/336516"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-10-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Sciences+du+vivant&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Sciences+du+vivant&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Sciences+du+vivant&", "hreflang": "en-US"}, {"rel": "last", "type": "application/geo+json", "title": "items (last)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Sciences+du+vivant&offset=14", "hreflang": "en-US"}], "numberMatched": 14, "numberReturned": 14, "distributedFeatures": [], "timeStamp": "2026-07-27T05:20:18.335127Z"}