{"type": "FeatureCollection", "features": [{"id": "10.1016/j.agrformet.2022.108823", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:15:13Z", "type": "Journal Article", "created": "2022-01-20", "title": "Timing leaf senescence : a generalized additive models for location, scale and shape approach", "description": "Accurate estimations of phenophases in deciduous trees are important to understand forest ecosystems and their feedback on the climate. In particular, the timing of leaf senescence is of fundamental importance to trees' nutrient stoichiometry and drought tolerance and therefore to trees' vigor and fecundity. Nevertheless, there is no integrated view on the significance, and direction, of seasonal trends in leaf senescence, especially for years characterized by extreme weather events. Difficulties in the acquisition and analyses of hierarchical data can account for this. We collected four years of chlorophyll content index (CCI) measurements in thirty-eight individuals of four deciduous tree species (Betula pendula, Fagus sylvatica, Populus tremula and Quercus robur) in Belgium, Norway and Spain, and analyzed these data using generalized additive models for location, scale and shape (GAMLSS). As a result, (I) the phenological strategy and seasonal trend of leaf senescence in these tree species could be clarified for exceptionally dry and warm years, and (II) the daily average (air) temperature, global radiation, and vapor pressure deficit could be established as main drivers behind the variation in the timing of the senescence transition date. Our results show that the onset of the re-organization phase in the leaf senescence, which we approximated and defined as local minima in the second derivative of a CCI graph, was in all species mainly negatively affected by the average temperature, global radiation and vapor pressure deficit. All together the variables explained 89 to 98% of the variability in the leaf senescence timing. An additional finding is that the generalized beta type 2 and generalized gamma distributions are well suited to model the chlorophyll content index, while the senescence transition date can be modeled using the normal-exponential-student-t, generalized gamma and zero-inflated Box-Cox Cole and Green distributions for beech, oak and birch, and poplar, respectively.", "keywords": ["0106 biological sciences", "Physics", "ta1183", "Silver birch", "15. Life on land", "01 natural sciences", "Generalized additive models for location", "Scale and shape", "European beech", "Pedunculate oak", "Chemistry", "Leaf senescence", "13. Climate action", "European aspen", "ta1181", "0101 mathematics", "Biology"]}, "links": [{"href": "https://doi.org/10.1016/j.agrformet.2022.108823"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agricultural%20and%20Forest%20Meteorology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agrformet.2022.108823", "name": "item", "description": "10.1016/j.agrformet.2022.108823", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agrformet.2022.108823"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-03-01T00:00:00Z"}}, {"id": "10.1007/s00442-011-2097-7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:14:34Z", "type": "Journal Article", "created": "2011-08-08", "title": "Nitrogen And Water Availability Interact To Affect Leaf Stoichiometry In A Semi-Arid Grassland", "description": "The effects of global change factors on the stoichiometric composition of green and senesced plant tissues are critical determinants of ecosystem feedbacks to anthropogenic-driven global change. So far, little is known about species stoichiometric responses to these changes. We conducted a manipulative field experiment with nitrogen (N; 17.5 g m(-2) year(-1)) and water addition (180 mm per growing season) in a temperate steppe of northern China that is potentially highly vulnerable to global change. A unique and important outcome of our study is that water availability modulated plant nutritional and stoichiometric responses to increased N availability. N addition significantly reduced C:N ratios and increased N:P ratios but only under ambient water conditions. Under increased water supply, N addition had no effect on C:N ratios in green and senesced leaves and N:P ratios in senesced leaves, and significantly decreased C:P ratios in both green and senesced leaves and N:P ratios in green leaves. Stoichiometric ratios varied greatly among species. Our results suggest that N and water addition and species identity can affect stoichiometric ratios of both green and senesced tissues through direct and interactive means. Our findings highlight the importance of water availability in modulating stoichiometric responses of plants to potentially increased N availability in semi-arid grasslands.", "keywords": ["0106 biological sciences", "2. Zero hunger", "Nitrogen", "Climate", "Water", "Mongolia", "15. Life on land", "Poaceae", "01 natural sciences", "6. Clean water", "Plant Leaves", "Soil", "13. Climate action", "Cellular Senescence", "Ecosystem"]}, "links": [{"href": "https://doi.org/10.1007/s00442-011-2097-7"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-011-2097-7", "name": "item", "description": "10.1007/s00442-011-2097-7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-011-2097-7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-08-09T00:00:00Z"}}, {"id": "10.1016/j.agrformet.2020.108031", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:15:13Z", "type": "Journal Article", "created": "2020-05-29", "title": "Inter-individual variability in spring phenology of temperate deciduous trees depends on species, tree size and previous year autumn phenology", "description": "We explored the inter-individual variability in bud-burst and its potential drivers, in homogeneous mature stands of temperate deciduous trees. Phenological observations of leaves and wood formation were performed weekly from summer 2017 to summer 2018 for pedunculate oak, European beech and silver birch in Belgium. The variability of bud-burst was correlated to previous' year autumn phenology (i.e. the onset of leaf senescence and the cessation of wood formation) and tree size but with important differences among species. In fact, variability of bud-burst was primarily related to onset of leaf senescence, cessation of wood formation and tree height for oak, beech and birch, respectively. The inter-individual variability of onset of leaf senescence was not related to the tree characteristics considered and was much larger than the inter-individual variability in bud-burst. Multi-species multivariate models could explain up to 66% of the bud-burst variability. These findings represent an important advance in our fundamental understanding and modelling of phenology and tree functioning of deciduous tree species.", "keywords": ["Agriculture and Food Sciences", "0106 biological sciences", "Atmospheric Science", "polno olistanje", "Broadleaved forest", "Silver birch", "Edellauvskog", "coloration", "01 natural sciences", "fenologija", "navadna bukev", "Pedunculate oak", "FAGUS-SYLVATICA", "PHLOEM", "Global and Planetary Change", "LEAF PHENOLOGY", "CLIMATE-CHANGE", "VDP::\u00d8kologi: 488", "Physics", "Forestry", "VDP::Ecology: 488", "04 agricultural and veterinary sciences", "dob", "navadna breza", "Chemistry", "Phenology", "info:eu-repo/classification/udc/630*811", "rumenenje listov", "XYLEM", "MODELS", "Article", "leaf unfolding", "Fenologi", "Coloration", "nastanek lesa", "Biology", "Wood formation", "kambij", "Leaf unfolding", "RADIAL GROWTH", "15. Life on land", "listavci", "European beech", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "SENESCENCE", "13. Climate action", "wood formation", "0401 agriculture", " forestry", " and fisheries", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "Agronomy and Crop Science"]}, "links": [{"href": "https://doi.org/10.1016/j.agrformet.2020.108031"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agricultural%20and%20Forest%20Meteorology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agrformet.2020.108031", "name": "item", "description": "10.1016/j.agrformet.2020.108031", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agrformet.2020.108031"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-08-01T00:00:00Z"}}, {"id": "10.1111/geb.13581", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:17:37Z", "type": "Journal Article", "created": "2022-08-15", "title": "Warming does not delay the start of autumnal leaf coloration but slows its progress rate", "description": "AbstractAim<p>Initiation of autumnal leaf senescence is crucial for plant overwintering and ecosystem dynamics. Previous studies have focused on the advanced stages of autumnal leaf senescence and reported that climatic warming delayed senescence, despite the fundamental differences among the stages of senescence. However, the timing of onset of leaf coloration (DLCO), the earliest visual sign of senescence, has rarely been studied. Here, we assessed the response of DLCO to temperature.</p>Location<p>30\uffe2\uff80\uff9375\uffc2\uffb0\uffc2\uffa0N in the Northern Hemisphere.</p>Time period<p>2000\uffe2\uff80\uff932018.</p>Major taxa studied<p>Deciduous vegetation.</p>Methods<p>We retrieved DLCO from high\uffe2\uff80\uff90temporal\uffe2\uff80\uff90resolution satellite data, which were then validated by PhenoCam observations. We investigated the temporal changes in DLCO and the relationship between DLCO and temperature by using satellite and ground observations.</p>Results<p>DLCO was not significantly (p\uffe2\uff80\uff89&gt;\uffe2\uff80\uff89.05) delayed between 2000 and 2018 in 94% of the area. DLCO was positively (p\uffe2\uff80\uff89&lt;\uffe2\uff80\uff89.05) correlated with pre\uffe2\uff80\uff90DLCO mean daily minimum temperature (Tmin) in only 9% of the area, whereas the end of leaf coloration (DLCE) was positively correlated with pre\uffe2\uff80\uff90DLCE mean Tmin over a larger area (34%). Further analyses showed that warming slowed the progress of leaf coloration. Interestingly, DLCO was less responsive to pre\uffe2\uff80\uff90DLCO mean Tmin in areas where daylength was longer across the Northern Hemisphere, particularly for woody vegetation.</p>Main conclusions<p>The rate of progress of coloration is more sensitive to temperature than its start date, resulting in an extension of the duration of leaf senescence under warming. The dependence of DLCO response to temperature on daylength indicates stronger photoperiodic control on initiation of leaf senescence in areas with longer daylength (i.e., shorter nights), possibly because plants respond to the length of uninterrupted darkness rather than daylength. This study indicates that the onset of leaf coloration was not responsive to climate warming and provides observational evidence of photoperiod control of autumnal leaf senescence at biome and continental scales.</p>", "keywords": ["[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", " Atmosphere", "[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", "570", "Atmosphere", "[SDU.OCEAN] Sciences of the Universe [physics]/Ocean", " Atmosphere", "Economics", "autumnal leaf senescence", "04 agricultural and veterinary sciences", "15. Life on land", "global warming", "photoperiod", "01 natural sciences", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "Chemistry", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", "leaf coloration onset", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", " environment", "environment", "Biology", "Northern Hemisphere", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/geb.13581"}, {"href": "https://doi.org/10.1111/geb.13581"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Ecology%20and%20Biogeography", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/geb.13581", "name": "item", "description": "10.1111/geb.13581", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/geb.13581"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-02-15T00:00:00Z"}}, {"id": "10.1016/j.molp.2024.10.010", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:16:00Z", "type": "Journal Article", "created": "2024-10-30", "title": "SCOOP10 and SCOOP12 peptides act through MIK2 receptor-like kinase to antagonistically regulate Arabidopsis leaf senescence", "description": "Leaf senescence plays a critical role in a plant's overall reproductive success due to its involvement in nutrient remobilization and allocation. However, our current understanding of the molecular mechanisms controlling leaf senescence remains limited. In this study, we show that the receptor-like kinase MALE DISCOVERER 1-INTERACTING RECEPTOR-LIKE KINASE 2 (MIK2) functions as a negative regulator of leaf senescence. We found that the SERINE-RICH ENDOGENOUS PEPTIDE 12, previously known to physically interact with MIK2, competes with SCOOP10 to regulate MIK2-dependent leaf senescence. We observed that increased expression of SCOOP10 or the application of exogenous SCOOP10 peptides accelerated leaf senescence in a MIK2-dependent manner. Conversely, SCOOP12 acted as a suppressor of MIK2-dependent leaf senescence regulation. Biochemical assays showed that SCOOP12 enhances while SCOOP10 diminishes MIK2 phosphorylation. Thus, the SCOOP12-MIK2 module might function antagonistically on SCOOP10-MIK2 signaling at late senescing stages, allowing for fine-tuned modulation of the leaf senescence process. Our study sheds light on the complex mechanisms underlying leaf senescence and provides valuable insights into the interplay between receptors, peptides, and the regulation of plant senescence.", "keywords": ["leaf senescence", "Arabidopsis Proteins", "Arabidopsis", "Protein Serine-Threonine Kinases", "Plant Senescence", "receptor-like kinase", "Plant Leaves", "SCOOP12", "Gene Expression Regulation", " Plant", "small signaling peptides", "MIK2", "Phosphorylation", "SCOOP10", "Peptides", "Protein Kinases", "Research Article"]}, "links": [{"href": "https://doi.org/10.1016/j.molp.2024.10.010"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Molecular%20Plant", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.molp.2024.10.010", "name": "item", "description": "10.1016/j.molp.2024.10.010", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.molp.2024.10.010"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-12-01T00:00:00Z"}}, {"id": "10.1186/s40793-021-00381-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:18:09Z", "type": "Journal Article", "created": "2021-02-10", "title": "Soil, senescence and exudate utilisation: characterisation of the\u00a0Paragon var. spring bread wheat root microbiome", "description": "Abstract<p>Conventional methods of agricultural pest control and crop fertilisation are contributing to a crisis of biodiversity loss, biogeochemical cycle dysregulation, and ecosystem collapse. Thus, we must find ecologically responsible means to control disease and promote crop yields. The root-associated microbiome may contribute to this goal as microbes can aid plants with disease suppression, abiotic stress relief, and nutrient bioavailability. We applied 16S rRNA gene &amp; fungal 18S rRNA gene (ITS2 region) amplicon sequencing to profile the diversity of the bacterial, archaeal &amp; fungal communities associated with the roots of UK elite spring bread wheat varietyTriticum aestivum var.Paragon in different soils and developmental stages. This revealed that community composition shifted significantly for all three groups across compartments. This shift was most pronounced for bacteria and fungi, while we observed weaker selection on the ammonia oxidising archaea-dominated archaeal community. Across multiple soil types we found that soil inoculum was a significant driver of endosphere community composition, however several bacterial families were identified as core enriched taxa in all soil conditions. The most abundant of these wereStreptomycetaceaeandBurkholderiaceae.Moreover, as the plants senesce, both families were reduced in abundance, indicating that input from the living plant was required to maintain their abundance in the endosphere. To understand which microbes are using wheat root exudates in the rhizosphere, root exudates were labelled in a13CO2DNA stable isotope probing experiment. This shows that bacterial taxa within theBurkholderiaceaefamily among other core enriched taxa, such asPseudomonadaceae,were able to use root exudates butStreptomycetaceaewere not. Overall, this work provides a better understanding of the wheat microbiome, including the endosphere community. Understanding crop microbiome formation will contribute to ecologically responsible methods for yield improvement and biocontrol in the future.</p>", "keywords": ["2. Zero hunger", "0301 basic medicine", "570", "0303 health sciences", "Exudate", "15. Life on land", "Senescence", "Microbiology", "630", "QR1-502", "Environmental sciences", "03 medical and health sciences", "Root", "Wheat", "GE1-350", "Microbiome", "Endosphere", "Research Article"]}, "links": [{"href": "http://oro.open.ac.uk/77831/1/40793_2021_Article_381.pdf"}, {"href": "https://ueaeprints.uea.ac.uk/id/eprint/80327/1/Published_Version.pdf"}, {"href": "https://link.springer.com/content/pdf/10.1186/s40793-021-00381-2.pdf"}, {"href": "https://doi.org/10.1186/s40793-021-00381-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40793-021-00381-2", "name": "item", "description": "10.1186/s40793-021-00381-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40793-021-00381-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-09T00:00:00Z"}}, {"id": "10.1093/treephys/tpaa058", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:17:19Z", "type": "Journal Article", "created": "2020-04-24", "title": "Timeline of autumn phenology in temperate deciduous trees", "description": "Abstract                <p>Cessation of xylem formation or wood growth (CWG) and onset of foliar senescence (OFS) are key autumn phenological events in temperate deciduous trees. Their timing is fundamental for the development and survival of trees, ecosystem nutrient cycling and the seasonal exchange of matter and energy between the biosphere and atmosphere, and affects the impact and feedback of forests to global change. A large-scale experimental effort and improved observational methods have allowed us to compare the timing of CWG and OFS for different deciduous tree species in Western Europe, particularly in silver birch, a pioneer species, and European beech, a late-succession species, at stands of different latitudes, of different levels of site fertility, for 2 years with contrasting meteorological and drought conditions, i.e., the low moderately dry 2017 and the extremely dry 2018. Specifically, we tested whether foliar senescence started before, after or concurrently with CWG. Onset of foliar senescence and CWG occurred generally between late September and early November, with larger differences across species and sites for OFS. Foliar senescence started concurrently with CWG in most cases, except for the drier 2018 and, for beech, at the coldest site, where OFS occurred significantly later than CWG. The behavior of beech in Spain, the southern edge of its European distribution, was unclear, with no CWG, but very low wood growth at the time of OFS. Our study suggests that OFS is generally triggered by the same drivers of CWG or when wood growth decreases in late summer, indicating an overarching mechanism of sink limitation as a possible regulator of the timing of foliar senescence.</p>", "keywords": ["0106 biological sciences", "listna senescenca", "nastajanje lesa", "cambium", "info:eu-repo/classification/udc/630*18:630*8", "autumn phenology", " xylem formation", " foliar senescence", " cambium", " chlorophyll", " radial growth", " wood", " decidiuous trees", " common aspen", " common beech", " pedunculate oak", " silver birch", "01 natural sciences", "jesenska fenologija", " nastajanje lesa", " listna senescenca", " kambij", " klorofil", " debelinska rast", " les", " listavci", " trepetlika", " navadna bukev", " dob", " navadna breza", "trepetlika", "Trees", "navadna bukev", "klorofil", "les", "chlorophyll", "pedunculate oak", "Biology", "info:eu-repo/classification/udc/630*1", "Ecosystem", "xylem formation", "kambij", "silver birch", "Temperature", "sink limitation", "04 agricultural and veterinary sciences", "dob", "navadna breza", "15. Life on land", "debelinska rast", "common beech", "listavci", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "Europe", "Plant Leaves", "radial growth", "jesenska fenologija", "common aspen", "Spain", "13. Climate action", "foliar senescence", "wood growth", "0401 agriculture", " forestry", " and fisheries", "Seasons", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "autumn phenology", "decidiuous trees", "wood"]}, "links": [{"href": "https://doi.org/10.1093/treephys/tpaa058"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Tree%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/treephys/tpaa058", "name": "item", "description": "10.1093/treephys/tpaa058", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/treephys/tpaa058"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-27T00:00:00Z"}}, {"id": "10.1101/2021.02.09.430461", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:17:22Z", "type": "Journal Article", "created": "2021-02-10", "title": "Soil, senescence and exudate utilisation: Characterisation of the Paragon var. spring bread wheat root microbiome", "description": "Abstract<p>Conventional methods of agricultural pest control and crop fertilisation are contributing to a crisis of biodiversity loss, biogeochemical cycle dysregulation, and ecosystem collapse. Thus, we must find ecologically responsible means to control disease and promote crop yields. The root-associated microbiome may contribute to this goal as microbes can aid plants with disease suppression, abiotic stress relief, and nutrient bioavailability. We applied 16S rRNA gene &amp; fungal 18S rRNA gene (ITS2 region) amplicon sequencing to profile the diversity of the bacterial, archaeal &amp; fungal communities associated with the roots of UK elite spring bread wheat varietyTriticum aestivum var.Paragon in different soils and developmental stages. This revealed that community composition shifted significantly for all three groups across compartments. This shift was most pronounced for bacteria and fungi, while we observed weaker selection on the ammonia oxidising archaea-dominated archaeal community. Across multiple soil types we found that soil inoculum was a significant driver of endosphere community composition, however several bacterial families were identified as core enriched taxa in all soil conditions. The most abundant of these wereStreptomycetaceaeandBurkholderiaceae.Moreover, as the plants senesce, both families were reduced in abundance, indicating that input from the living plant was required to maintain their abundance in the endosphere. To understand which microbes are using wheat root exudates in the rhizosphere, root exudates were labelled in a13CO2DNA stable isotope probing experiment. This shows that bacterial taxa within theBurkholderiaceaefamily among other core enriched taxa, such asPseudomonadaceae,were able to use root exudates butStreptomycetaceaewere not. Overall, this work provides a better understanding of the wheat microbiome, including the endosphere community. Understanding crop microbiome formation will contribute to ecologically responsible methods for yield improvement and biocontrol in the future.</p", "keywords": ["0301 basic medicine", "2. Zero hunger", "570", "0303 health sciences", "Exudate", "15. Life on land", "Senescence", "Microbiology", "630", "QR1-502", "Environmental sciences", "03 medical and health sciences", "Root", "Wheat", "GE1-350", "Microbiome", "Endosphere", "Research Article"]}, "links": [{"href": "http://oro.open.ac.uk/77831/1/40793_2021_Article_381.pdf"}, {"href": "https://ueaeprints.uea.ac.uk/id/eprint/80327/1/Published_Version.pdf"}, {"href": "https://link.springer.com/content/pdf/10.1186/s40793-021-00381-2.pdf"}, {"href": "https://doi.org/10.1101/2021.02.09.430461"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/2021.02.09.430461", "name": "item", "description": "10.1101/2021.02.09.430461", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/2021.02.09.430461"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-09T00:00:00Z"}}, {"id": "10.3390/cells9092026", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:19:22Z", "type": "Journal Article", "created": "2020-09-03", "title": "Chemical Genetics Approach Identifies Abnormal Inflorescence Meristem 1 as a Putative Target of a Novel Sulfonamide That Protects Catalase2-Deficient Arabidopsis against Photorespiratory Stress", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Alterations of hydrogen peroxide (H2O2) levels have a profound impact on numerous signaling cascades orchestrating plant growth, development, and stress signaling, including programmed cell death. To expand the repertoire of known molecular mechanisms implicated in H2O2 signaling, we performed a forward chemical screen to identify small molecules that could alleviate the photorespiratory-induced cell death phenotype of Arabidopsisthaliana mutants lacking H2O2-scavenging capacity by peroxisomal catalase2. Here, we report the characterization of pakerine, an m-sulfamoyl benzamide from the sulfonamide family. Pakerine alleviates the cell death phenotype of cat2 mutants exposed to photorespiration-promoting conditions and delays dark-induced senescence in wild-type Arabidopsis leaves. By using a combination of transcriptomics, metabolomics, and affinity purification, we identified abnormal inflorescence meristem 1 (AIM1) as a putative protein target of pakerine. AIM1 is a 3-hydroxyacyl-CoA dehydrogenase involved in fatty acid \u03b2-oxidation that contributes to jasmonic acid (JA) and salicylic acid (SA) biosynthesis. Whereas intact JA biosynthesis was not required for pakerine bioactivity, our results point toward a role for \u03b2-oxidation-dependent SA production in the execution of H2O2-mediated cell death.</p></article>", "keywords": ["EXPRESSION", "0106 biological sciences", "0301 basic medicine", "photorespiration", "Cell Respiration", "Meristem", "Arabidopsis", "Cyclopentanes", "catalase2-deficient <i>Arabidopsis</i>", "01 natural sciences", "Article", "ACTIVATION", "catalase2-deficient Arabidopsis", "03 medical and health sciences", "HYDROGEN-PEROXIDE", "Hydroponics", "Gene Expression Regulation", " Plant", "Multienzyme Complexes", "Stress", " Physiological", "Plant Cells", "SALICYLIC-ACID BIOSYNTHESIS", "H<sub>2</sub>O<sub>2</sub> signaling", "Medicine and Health Sciences", "abnormal inflorescence meristem 1", "LEAF SENESCENCE", "Oxylipins", "Photosynthesis", "2. Zero hunger", "QH573-671", "Cell Death", "Arabidopsis Proteins", "Gene Expression Profiling", "Biology and Life Sciences", "Computational Biology", "Hydrogen Peroxide", "ARABIDOPSIS", "MULTIFUNCTIONAL PROTEIN", "3. Good health", "PEROXISOMAL BETA-OXIDATION", "Plant Leaves", "chemical genetics", "CELL-DEATH", "PHENYLALANINE AMMONIA-LYASE", "Seeds", "Cytology", "Salicylic Acid", "H2O2 signaling", "Signal Transduction"]}, "links": [{"href": "http://www.mdpi.com/2073-4409/9/9/2026/pdf"}, {"href": "https://doi.org/10.3390/cells9092026"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Cells", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/cells9092026", "name": "item", "description": "10.3390/cells9092026", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/cells9092026"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-09-02T00:00:00Z"}}, {"id": "10.3390/f11111186", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:19:23Z", "type": "Journal Article", "created": "2020-11-10", "title": "Counter-Intuitive Response to Water Limitation in a Southern European Provenance of Frangula alnus Mill. in a Common Garden Experiment", "description": "<p>Climate change will intensify drought periods during the growing season in Western Europe. We mimicked this prediction by withholding water in summer from young rooted cuttings of Frangula alnus Mill., a common shrub species, originating from different latitudes in Europe (Italy, Belgium and Sweden) and growing in a common garden environment in Belgium. We followed the responses to the drought up to two years after the treatment. Counter-intuitively, the Italian provenance displayed earlier symptoms and stronger effects of water limitation than the other two provenances. A putative higher transpiration in this provenance could be suggested based on a relative larger shoot growth, larger leaves and a higher stomatal density. After the post-drought re-watering, the droughted plants of the Italian provenance entered leaf senescence later than the control plants, likely as a compensation mechanism for the lost growing time. Bud burst in the first year after the drought treatment and leaf senescence in the next autumn were both advanced in the drought treated group when compared with the control plants. Bud burst in the second year after the drought treatment did not display any differentiation anymore between control and drought treated plants. Growth traits also displayed legacies of the water limitation. For example, the drought treated plants showed a lower number of reshoots upon pruning in the year after the drought treatment. Our results suggest that assisted migration from southern Europe to western Europe as a climate change adaptation strategy might not always follow the expected patterns.</p>", "keywords": ["Agriculture and Food Sciences", "0301 basic medicine", "plant architecture", "leaf senescence", "drought", "SESSILE OAK", "CARBOHYDRATE RESERVES", "ROBUR", "DROUGHT TOLERANCE", "03 medical and health sciences", "Biology", "TREE", "2. Zero hunger", "0303 health sciences", "CLIMATE-CHANGE", "general linear mixed models", "Forestry", "15. Life on land", "6. Clean water", "DIFFERENTIATION", "glossy buckthorn", "13. Climate action", "QUERCUS-PETRAEA", "post-drought recovery", "GROWTH", "POPULATIONS", "common garden", "bud burst"]}, "links": [{"href": "http://www.mdpi.com/1999-4907/11/11/1186/pdf"}, {"href": "https://doi.org/10.3390/f11111186"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Forests", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/f11111186", "name": "item", "description": "10.3390/f11111186", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/f11111186"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-10T00:00:00Z"}}, {"id": "3177278914", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:23:12Z", "type": "Journal Article", "created": "2021-02-10", "title": "Soil, senescence and exudate utilisation: Characterisation of the Paragon var. spring bread wheat root microbiome", "description": "Abstract<p>Conventional methods of agricultural pest control and crop fertilisation are contributing to a crisis of biodiversity loss, biogeochemical cycle dysregulation, and ecosystem collapse. Thus, we must find ecologically responsible means to control disease and promote crop yields. The root-associated microbiome may contribute to this goal as microbes can aid plants with disease suppression, abiotic stress relief, and nutrient bioavailability. We applied 16S rRNA gene &amp; fungal 18S rRNA gene (ITS2 region) amplicon sequencing to profile the diversity of the bacterial, archaeal &amp; fungal communities associated with the roots of UK elite spring bread wheat varietyTriticum aestivum var.Paragon in different soils and developmental stages. This revealed that community composition shifted significantly for all three groups across compartments. This shift was most pronounced for bacteria and fungi, while we observed weaker selection on the ammonia oxidising archaea-dominated archaeal community. Across multiple soil types we found that soil inoculum was a significant driver of endosphere community composition, however several bacterial families were identified as core enriched taxa in all soil conditions. The most abundant of these wereStreptomycetaceaeandBurkholderiaceae.Moreover, as the plants senesce, both families were reduced in abundance, indicating that input from the living plant was required to maintain their abundance in the endosphere. To understand which microbes are using wheat root exudates in the rhizosphere, root exudates were labelled in a13CO2DNA stable isotope probing experiment. This shows that bacterial taxa within theBurkholderiaceaefamily among other core enriched taxa, such asPseudomonadaceae,were able to use root exudates butStreptomycetaceaewere not. Overall, this work provides a better understanding of the wheat microbiome, including the endosphere community. Understanding crop microbiome formation will contribute to ecologically responsible methods for yield improvement and biocontrol in the future.</p", "keywords": ["0301 basic medicine", "2. Zero hunger", "570", "0303 health sciences", "Exudate", "15. Life on land", "Senescence", "Microbiology", "630", "QR1-502", "Environmental sciences", "03 medical and health sciences", "Root", "Wheat", "GE1-350", "Microbiome", "Endosphere", "Research Article"]}, "links": [{"href": "http://oro.open.ac.uk/77831/1/40793_2021_Article_381.pdf"}, {"href": "https://ueaeprints.uea.ac.uk/id/eprint/80327/1/Published_Version.pdf"}, {"href": "https://link.springer.com/content/pdf/10.1186/s40793-021-00381-2.pdf"}, {"href": "https://doi.org/3177278914"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3177278914", "name": "item", "description": "3177278914", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3177278914"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-09T00:00:00Z"}}, {"id": "1854/LU-8674409", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:22:27Z", "type": "Journal Article", "created": "2020-09-03", "title": "Chemical Genetics Approach Identifies Abnormal Inflorescence Meristem 1 as a Putative Target of a Novel Sulfonamide That Protects Catalase2-Deficient Arabidopsis against Photorespiratory Stress", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Alterations of hydrogen peroxide (H2O2) levels have a profound impact on numerous signaling cascades orchestrating plant growth, development, and stress signaling, including programmed cell death. To expand the repertoire of known molecular mechanisms implicated in H2O2 signaling, we performed a forward chemical screen to identify small molecules that could alleviate the photorespiratory-induced cell death phenotype of Arabidopsisthaliana mutants lacking H2O2-scavenging capacity by peroxisomal catalase2. Here, we report the characterization of pakerine, an m-sulfamoyl benzamide from the sulfonamide family. Pakerine alleviates the cell death phenotype of cat2 mutants exposed to photorespiration-promoting conditions and delays dark-induced senescence in wild-type Arabidopsis leaves. By using a combination of transcriptomics, metabolomics, and affinity purification, we identified abnormal inflorescence meristem 1 (AIM1) as a putative protein target of pakerine. AIM1 is a 3-hydroxyacyl-CoA dehydrogenase involved in fatty acid \u03b2-oxidation that contributes to jasmonic acid (JA) and salicylic acid (SA) biosynthesis. Whereas intact JA biosynthesis was not required for pakerine bioactivity, our results point toward a role for \u03b2-oxidation-dependent SA production in the execution of H2O2-mediated cell death.</p></article>", "keywords": ["EXPRESSION", "0106 biological sciences", "0301 basic medicine", "photorespiration", "Cell Respiration", "Meristem", "Arabidopsis", "Cyclopentanes", "catalase2-deficient <i>Arabidopsis</i>", "01 natural sciences", "Article", "ACTIVATION", "catalase2-deficient Arabidopsis", "03 medical and health sciences", "HYDROGEN-PEROXIDE", "Hydroponics", "Gene Expression Regulation", " Plant", "Multienzyme Complexes", "Stress", " Physiological", "Plant Cells", "SALICYLIC-ACID BIOSYNTHESIS", "H<sub>2</sub>O<sub>2</sub> signaling", "Medicine and Health Sciences", "abnormal inflorescence meristem 1", "LEAF SENESCENCE", "Oxylipins", "Photosynthesis", "2. Zero hunger", "QH573-671", "Cell Death", "Arabidopsis Proteins", "Gene Expression Profiling", "Biology and Life Sciences", "Computational Biology", "Hydrogen Peroxide", "ARABIDOPSIS", "MULTIFUNCTIONAL PROTEIN", "3. Good health", "PEROXISOMAL BETA-OXIDATION", "Plant Leaves", "chemical genetics", "CELL-DEATH", "PHENYLALANINE AMMONIA-LYASE", "Seeds", "Cytology", "Salicylic Acid", "H2O2 signaling", "Signal Transduction"]}, "links": [{"href": "http://www.mdpi.com/2073-4409/9/9/2026/pdf"}, {"href": "https://doi.org/1854/LU-8674409"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Cells", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "1854/LU-8674409", "name": "item", "description": "1854/LU-8674409", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/1854/LU-8674409"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-09-02T00:00:00Z"}}, {"id": "PMC8215762", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:24:43Z", "type": "Journal Article", "created": "2021-02-10", "title": "Soil, senescence and exudate utilisation: Characterisation of the Paragon var. spring bread wheat root microbiome", "description": "Abstract<p>Conventional methods of agricultural pest control and crop fertilisation are contributing to a crisis of biodiversity loss, biogeochemical cycle dysregulation, and ecosystem collapse. Thus, we must find ecologically responsible means to control disease and promote crop yields. The root-associated microbiome may contribute to this goal as microbes can aid plants with disease suppression, abiotic stress relief, and nutrient bioavailability. We applied 16S rRNA gene &amp; fungal 18S rRNA gene (ITS2 region) amplicon sequencing to profile the diversity of the bacterial, archaeal &amp; fungal communities associated with the roots of UK elite spring bread wheat varietyTriticum aestivum var.Paragon in different soils and developmental stages. This revealed that community composition shifted significantly for all three groups across compartments. This shift was most pronounced for bacteria and fungi, while we observed weaker selection on the ammonia oxidising archaea-dominated archaeal community. Across multiple soil types we found that soil inoculum was a significant driver of endosphere community composition, however several bacterial families were identified as core enriched taxa in all soil conditions. The most abundant of these wereStreptomycetaceaeandBurkholderiaceae.Moreover, as the plants senesce, both families were reduced in abundance, indicating that input from the living plant was required to maintain their abundance in the endosphere. To understand which microbes are using wheat root exudates in the rhizosphere, root exudates were labelled in a13CO2DNA stable isotope probing experiment. This shows that bacterial taxa within theBurkholderiaceaefamily among other core enriched taxa, such asPseudomonadaceae,were able to use root exudates butStreptomycetaceaewere not. Overall, this work provides a better understanding of the wheat microbiome, including the endosphere community. Understanding crop microbiome formation will contribute to ecologically responsible methods for yield improvement and biocontrol in the future.</p", "keywords": ["2. Zero hunger", "0301 basic medicine", "570", "0303 health sciences", "Exudate", "15. Life on land", "Senescence", "Microbiology", "630", "QR1-502", "Environmental sciences", "03 medical and health sciences", "Root", "Wheat", "GE1-350", "Microbiome", "Endosphere", "Research Article"]}, "links": [{"href": "http://oro.open.ac.uk/77831/1/40793_2021_Article_381.pdf"}, {"href": "https://ueaeprints.uea.ac.uk/id/eprint/80327/1/Published_Version.pdf"}, {"href": "https://link.springer.com/content/pdf/10.1186/s40793-021-00381-2.pdf"}, {"href": "https://doi.org/PMC8215762"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC8215762", "name": "item", "description": "PMC8215762", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC8215762"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-09T00:00:00Z"}}, {"id": "PMC11630628", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:24:39Z", "type": "Journal Article", "created": "2024-10-30", "title": "SCOOP10 and SCOOP12 peptides act through MIK2 receptor-like kinase to antagonistically regulate Arabidopsis leaf senescence", "description": "Leaf senescence plays a critical role in a plant's overall reproductive success due to its involvement in nutrient remobilization and allocation. However, our current understanding of the molecular mechanisms controlling leaf senescence remains limited. In this study, we show that the receptor-like kinase MALE DISCOVERER 1-INTERACTING RECEPTOR-LIKE KINASE 2 (MIK2) functions as a negative regulator of leaf senescence. We found that the SERINE-RICH ENDOGENOUS PEPTIDE 12, previously known to physically interact with MIK2, competes with SCOOP10 to regulate MIK2-dependent leaf senescence. We observed that increased expression of SCOOP10 or the application of exogenous SCOOP10 peptides accelerated leaf senescence in a MIK2-dependent manner. Conversely, SCOOP12 acted as a suppressor of MIK2-dependent leaf senescence regulation. Biochemical assays showed that SCOOP12 enhances while SCOOP10 diminishes MIK2 phosphorylation. Thus, the SCOOP12-MIK2 module might function antagonistically on SCOOP10-MIK2 signaling at late senescing stages, allowing for fine-tuned modulation of the leaf senescence process. Our study sheds light on the complex mechanisms underlying leaf senescence and provides valuable insights into the interplay between receptors, peptides, and the regulation of plant senescence.", "keywords": ["leaf senescence", "Arabidopsis Proteins", "Arabidopsis", "Protein Serine-Threonine Kinases", "Plant Senescence", "receptor-like kinase", "Plant Leaves", "SCOOP12", "Gene Expression Regulation", " Plant", "small signaling peptides", "MIK2", "Phosphorylation", "SCOOP10", "Peptides", "Protein Kinases", "Research Article"]}, "links": [{"href": "https://doi.org/PMC11630628"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Molecular%20Plant", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC11630628", "name": "item", "description": "PMC11630628", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC11630628"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-12-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Senescence&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Senescence&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Senescence&", "hreflang": "en-US"}, {"rel": "last", "type": "application/geo+json", "title": "items (last)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=Senescence&offset=14", "hreflang": "en-US"}], "numberMatched": 14, "numberReturned": 14, "distributedFeatures": [], "timeStamp": "2026-09-22T10:58:54.281619Z"}