This work evaluates the release of phosphorus contained in the digestate from the anaerobic digestion of pig manure, through an acidification process. The objective of this acidification is to increase the amount of phosphorus available in the digestate liquid fraction and, subsequently, recover this element by chemical precipitation in the form of struvite or calcium phosphate. Two digestate samples (one fresh and one old) were studied and treated by adding various amounts of sulphuric acid to the different digestate fractions (raw digestate, solid fraction and liquid fraction). For the raw digestate, phosphorus releases higher than 95% were obtained for pH 4.0. In the last part of the experiment, the influence of acid pre-treatment on the reaction yield of phosphorus precipitation, in the form of struvite or calcium phosphate, was determined. Improvements in reaction yield were obtained up to 15% for struvite and 80% for calcium phosphate, increasing also in 7.5 times the amount of phosphorus available in the digestate liquid fraction, for both cases.
", "keywords": ["Biofertiliser", "FEASIBILITY", "NUTRIENT RECOVERY", "PH", "Struvite", "Swine", "SWINE WASTE-WATER", "0211 other engineering and technologies", "02 engineering and technology", "7. Clean energy", "01 natural sciences", "CALCIUM", "Acidification", "ANAEROBIC-DIGESTION", "Environmental Chemistry", "PHOSPHORUS REMOVAL", "Animals", "Chemical Precipitation", "Toxicology and Mutagenesis", "Anaerobiosis", "Organic waste", "SLUDGE", "0105 earth and related environmental sciences", "Phosphorus", "General Medicine", "Pollution", "6. Clean water", "Manure", "Nutrient recovery", "Health", "Earth and Environmental Sciences", "Release", "PRECIPITATION", "Waste and Biomass Management & Valorization", "CRYSTALLIZATION"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1007/s11356-020-10918-6.pdf"}, {"href": "https://doi.org/10.1007/s11356-020-10918-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20and%20Pollution%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11356-020-10918-6", "name": "item", "description": "10.1007/s11356-020-10918-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11356-020-10918-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-03T00:00:00Z"}}, {"id": "10.1016/j.biortech.2012.08.124", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:15:59Z", "type": "Journal Article", "created": "2012-09-03", "title": "Comparing Environmental Consequences Of Anaerobic Mono- And Co-Digestion Of Pig Manure To Produce Bio-Energy - A Life Cycle Perspective", "description": "The aim of this work was to assess the environmental consequences of anaerobic mono- and co-digestion of pig manure to produce bio-energy, from a life cycle perspective. This included assessing environmental impacts and land use change emissions (LUC) required to replace used co-substrates for anaerobic digestion. Environmental impact categories considered were climate change, terrestrial acidification, marine and freshwater eutrophication, particulate matter formation, land use, and fossil fuel depletion. Six scenarios were evaluated: mono-digestion of manure, co-digestion with: maize silage, maize silage and glycerin, beet tails, wheat yeast concentrate (WYC), and roadside grass. Mono-digestion reduced most impacts, but represented a limited source for bio-energy. Co-digestion with maize silage, beet tails, and WYC (competing with animal feed), and glycerin increased bio-energy production (up to 568%), but at expense of increasing climate change (through LUC), marine eutrophication, and land use. Co-digestion with wastes or residues like roadside grass gave the best environmental performance.", "keywords": ["2. Zero hunger", "Swine", "emissions", "indirect land use change", "02 engineering and technology", "bioenergy", "Environment", "15. Life on land", "pig slurry", "renewable energy", "7. Clean energy", "6. Clean water", "Consequential LCA", "Refuse Disposal", "12. Responsible consumption", "Manure", "Bacteria", " Anaerobic", "13. Climate action", "Biofuels", "greenhouse gases", "11. Sustainability", "0202 electrical engineering", " electronic engineering", " information engineering", "systems", "Animals", "Methane"]}, "links": [{"href": "https://doi.org/10.1016/j.biortech.2012.08.124"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioresource%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biortech.2012.08.124", "name": "item", "description": "10.1016/j.biortech.2012.08.124", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biortech.2012.08.124"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-12-01T00:00:00Z"}}, {"id": "10.1016/j.biortech.2019.122728", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:15:59Z", "type": "Journal Article", "created": "2020-01-02", "title": "Effects of copper salts on performance, antibiotic resistance genes, and microbial community during thermophilic anaerobic digestion of swine manure", "description": "This study investigated methane production and ARGs reduction during thermophilic AD of swine manure with the addition of different Cu salts (cupric sulfate, cupric glycinate, and the 1:1 mixture of these two salts). Results showed methane production was increased by 28.78% through adding mixed Cu salts. The mixed Cu group effectively reduced total ARGs abundance by 26.94%, suggesting mixed Cu salts did not promote the potential ARGs risk. The positive effects of mixed Cu salts on AD performance and ARGs removal might be ascribed to the low bioavailability. Microbial community analysis indicated the highest abundances of Clostridia_MBA03 and Methanobacterium in the mixed Cu group might cause the increased methane production. Spearman's rank correlation analysis elucidated the succession in microbial community induced by environmental factors was the main driver for shaping ARGs profiles. Thus, mixed Cu salts could be an alternative to replace the inorganic Cu salt in animal feed additives.", "keywords": ["Manure", "Genes", " Bacterial", "Swine", "Microbiota", "Animals", "Drug Resistance", " Microbial", "Anaerobiosis", "01 natural sciences", "Copper", "6. Clean water", "Anti-Bacterial Agents", "0105 earth and related environmental sciences"], "contacts": [{"organization": "Wu, Xiayuan, Tian, Zhenzhen, Lv, Zuopeng, Chen, Zixuan, Liu, Yongdi, Yong, Xiaoyu, Zhou, Jun, Xie, Xinxin, Jia, Honghua, Wei, Ping,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.biortech.2019.122728"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioresource%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biortech.2019.122728", "name": "item", "description": "10.1016/j.biortech.2019.122728", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biortech.2019.122728"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-03-01T00:00:00Z"}}, {"id": "10.1016/j.bios.2021.113890", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:16:00Z", "type": "Journal Article", "created": "2021-12-16", "title": "Real-time detection of ochratoxin A in wine through insight of aptamer conformation in conjunction with graphene field-effect transistor", "description": "Mycotoxins comprise a frequent type of toxins present in food and feed. The problem of mycotoxin contamination has been recently aggravated due to the increased complexity of the farm-to-fork chains, resulting in negative effects on human and animal health and, consequently, economics. The easy-to-use, on-site, on-demand, and rapid monitoring of mycotoxins in food/feed is highly desired. In this work, we report on an advanced mycotoxin biosensor based on an array of graphene field-effect transistors integrated on a single silicon chip. A specifically designed aptamer against Ochratoxin A (OTA) was used as a recognition element, where it was covalently attached to graphene surface via pyrenebutanoic acid, succinimidyl ester (PBASE) chemistry. Namely, an electric field stimulation was used to promote more efficient \u03c0-\u03c0 stacking of PBASE to graphene. The specific G-rich aptamer strand suggest its \u03c0-\u03c0 stacking on graphene in free-standing regime and reconfiguration in G-quadruplex during binding an OTA molecule. This realistic behavior of the aptamer is sensitive to the ionic strength of the analyte solution, demonstrating a 10-fold increase in sensitivity at low ionic strengths. The graphene-aptamer sensors reported here demonstrate fast assay with the lowest detection limit of 1.4 pM for OTA within a response time as low as 10 s, which is more than 30 times faster compared to any other reported aptamer-based methods for mycotoxin detection. The sensors hold comparable performance when operated in real-time within a complex matrix of wine without additional time-consuming pre-treatment.", "keywords": ["Condensed Matter - Materials Science", "Condensed Matter - Mesoscale and Nanoscale Physics", "Materials Science (cond-mat.mtrl-sci)", "FOS: Physical sciences", "Wine", "Biosensing Techniques", "02 engineering and technology", "Aptamers", " Nucleotide", "Ochratoxins", "01 natural sciences", "3. Good health", "0104 chemical sciences", "Limit of Detection", "Mesoscale and Nanoscale Physics (cond-mat.mes-hall)", "Animals", "Humans", "Graphite", "0210 nano-technology"]}, "links": [{"href": "https://doi.org/10.1016/j.bios.2021.113890"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biosensors%20and%20Bioelectronics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.bios.2021.113890", "name": "item", "description": "10.1016/j.bios.2021.113890", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.bios.2021.113890"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-03-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2010.08.026", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:16:04Z", "type": "Journal Article", "created": "2010-09-13", "title": "Optimization Of Pig Slurry Application To Heavy Metal Polluted Soils Monitoring Nitrification Processes", "description": "Nitrification is often negatively affected by heavy metal pollution in soils, this limiting land revegetation. Thus, the potential use of pig slurry as a nitrogen-rich organic amendment in different heavy metal contaminated soils has been evaluated; this also being a way of recycling this waste. In order to identify the factors affecting nitrification processes in heavy metal polluted soils (soil pH, heavy metal solubility and the N source), incubation experiments were run using two polluted soils with different pH values (5.0 and 7.1) and a non-contaminated soil (pH 8.2). Ammonium was added as pig slurry or as ammonium sulphate for comparison (both added at 150 mg NH(4)(+)-N kg(-1) of soil). Pig slurry provoked higher nitrification rates and N-immobilisation than ammonium sulphate, especially in the neutral-polluted soil, reflecting an improvement of the microbial activity in the soil. The microbial immobilisation of N led to an inverse relationship between the amount of N added and nitrate conversion in the neutral-polluted soil and in the non-contaminated soil amended with different pig slurry dosages (75, 150 and 225mg NH(4)(+)-N kg(-1) of soil). Low rates of nitrification and N-immobilisation were found in the acidic soil. Pig slurry addition to metal polluted soils enhanced soil nitrification, especially when metals were in low-solubility forms.", "keywords": ["[SDE] Environmental Sciences", "2. Zero hunger", "PIG SLURRY RECYCLING", "SOIL RECLAMATION", "Nitrogen", "Swine", "METAL SOLUBILITY", "04 agricultural and veterinary sciences", "Hydrogen-Ion Concentration", "15. Life on land", "NITRIFICATION", "6. Clean water", "12. Responsible consumption", "Manure", "Quaternary Ammonium Compounds", "MICROBIAL IMMOBILISATION", "Biodegradation", " Environmental", "13. Climate action", "METAL", "Metals", " Heavy", "Animals", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2010.08.026"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2010.08.026", "name": "item", "description": "10.1016/j.chemosphere.2010.08.026", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2010.08.026"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-10-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2013.12.024", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:16:05Z", "type": "Journal Article", "created": "2014-01-04", "title": "Carbon Mineralization In Two Ultisols Amended With Different Sources And Particle Sizes Of Pyrolyzed Biochar", "description": "Biochar produced during pyrolysis has the potential to enhance soil fertility and reduce greenhouse gas emissions. The influence of biochar properties (e.g., particle size) on both short- and long-term carbon (C) mineralization of biochar remains unclear. There is minimal information on the potential effects of biochar particle sizes on their breakdowns by soil microorganism, so it is unknown if the particle size of biochar influences C mineralization rate and/or stability in soils. In order to evaluate the effect of different sources (BS) and particle sizes (BF) of biochar on C loss and/or stability in soils, an incubation study on C mineralization of different biochar sources and particle sizes was established using two soils (ST): Norfolk soil (fine loamy, kaolinitic, thermic, typic Kandiudults) and Coxville soil (fine loamy kaolinitic, thermic, Paleaquults). In separate incubation vessels, these soils were amended with one of two manure-based biochars (poultry litters, PL; swine solids, SS) or one of two lignocellulosic-based biochars (switchgrass, SG; pine chips, PC) which were processed into two particle sizes (dust, <0.42 mm; pellet, >2 mm). The amount of CO2 evolved varied significantly between soils (p\u22640.0001); particle sizes (p\u22640.0001) and the interactions of biochar source (p\u22640.001) and forms of biochars (p\u22640.0001) with soil types. Averaged across soils and sources of biochar, CO2-C evolved from dust-sized biochar (281 mg kg(-1)) was significantly higher than pellet-sized biochar (226 mg kg(-1)). Coxville soils with SS biochar produced the greatest average CO2-C of 428 mg kg(-1) and Norfolk soils with PC had the lowest CO2-C production (93 mg kg(-1)). Measured rates of carbon mineralization also varied with soils and sources of biochar (Norfolk: PL>SS>SG\u2265PC; Coxville: PC>SG>SS>PL). The average net CO2-C evolved from the Coxville soils (385 mg kg(-1)) was about threefold more than the CO2-C evolved from the Norfolk soils (123 mg kg(-1)). Our results suggest different particle sizes and sources of biochar as well as soil type influence biochar stability.", "keywords": ["2. Zero hunger", "Minerals", "Hot Temperature", "Swine", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "Carbon", "Poultry", "6. Clean water", "Manure", "Soil", "13. Climate action", "Charcoal", "11. Sustainability", "Animals", "0401 agriculture", " forestry", " and fisheries", "Particle Size", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2013.12.024"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2013.12.024", "name": "item", "description": "10.1016/j.chemosphere.2013.12.024", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2013.12.024"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-05-01T00:00:00Z"}}, {"id": "10.1016/j.copbio.2018.11.014", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:16:07Z", "type": "Journal Article", "created": "2018-12-11", "title": "Multi-omics and potential applications in wine production", "description": "The wine microbiome - that is the microbial communities associated with the fermentation of must, is one of the most important factors in transforming grapes to wine, including flavour and aroma. Recent developments in high throughput sequencing and other 'omics methodologies are rapidly changing the level and complexity of information that we are able to extract from the wine microbiome. This will significantly enhance not only our understanding of which microbes are present at the various stages of the grapevine growth and winemaking process, but also improve our understanding of the complex interactions between microbes, the substrate and environment, ultimately shaping wine production. In this perspective we describe the role and future potential of such techniques in wine production, and highlight the potential challenges that will be simultaneously faced.", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "03 medical and health sciences", "13. Climate action", "Microbiota", "DNA Barcoding", " Taxonomic", "Wine", "Genomics"]}, "links": [{"href": "https://doi.org/10.1016/j.copbio.2018.11.014"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Current%20Opinion%20in%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.copbio.2018.11.014", "name": "item", "description": "10.1016/j.copbio.2018.11.014", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.copbio.2018.11.014"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-04-01T00:00:00Z"}}, {"id": "10.1021/jf8020199", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:17:53Z", "type": "Journal Article", "created": "2008-12-10", "title": "Effects Of Elevated Co2 On Grapevine (Vitis Vinifera L.): Volatile Composition, Phenolic Content, And In Vitro Antioxidant Activity Of Red Wine", "description": "The impact of elevated carbon dioxide concentration ([CO2]) on the quality of berries, must, and red wine (with special reference to volatile composition, phenolic content, and antioxidant activity) made from Touriga Franca, a native grape variety of Vitis vinifera L. for Port and Douro wine manufacturing grown in the Demarcated Region of Douro, was investigated during 2005 and 2006. Grapevines were grown either in open-top chambers (OTC) with ambient (365 +/- 10 ppm) or elevated (500 +/-16 ppm) [CO2] or in an outside plot. In general, the increase of [CO2] did not affect berry characteristics, especially the total anthocyan and tannin concentrations. However, the total anthocyan and polyphenol concentrations of the red wine were inhibited under elevated [CO2]. The antioxidant capacity of the wines was determined by DPPH, ABTS, and TBARS assays and, despite the low concentrations of phenolics, the elevated [CO2] did not significantly change the total antioxidant capacity of the red wines. Thirty-five volatile compounds belonging to seven chemical groups were identified: C6 alcohols, higher alcohols, esters, terpenols, carbonyl compounds, acids, volatile phenols, and C13 norisoprenoids. Generally, the same volatile compounds were present in all of the wines, but the relative levels varied among the treatments. The effect of elevated [CO2] was significant because it was detected as an increase in ethyl 2-methylbutyrate, isoamyl acetate, ethyl hexanoate, ethyl octanoate, butyric acid, and isovaleric acid concentrations and a decrease in ethyl acetate concentration when compared to wines produced in ambient [CO2] in 2005. In elevated [CO2], wines from 2006 had lower methionol, 1-octanol, and 4-ethylguaiacol and higher ethyl lactate and linalool concentrations. The increase in [CO2] did not significantly affect C6 alcohols, citronellol, carbonyl compounds, and beta-damascenone concentrations. This study showed that the predicted rise in [CO2] did not produce negative effects on the quality of grapes and red wine. Although some of the compounds were slightly affected, the red wine quality remained almost unaffected.", "keywords": ["Flavonoids", "0301 basic medicine", "Volatile Organic Compounds", "0303 health sciences", "Atmosphere", "Polyphenols", "Wine", "Carbon Dioxide", "Antioxidants", "Anthocyanins", "03 medical and health sciences", "Phenols", "Fruit", "Odorants", "Vitis"]}, "links": [{"href": "https://doi.org/10.1021/jf8020199"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Agricultural%20and%20Food%20Chemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1021/jf8020199", "name": "item", "description": "10.1021/jf8020199", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1021/jf8020199"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-12-10T00:00:00Z"}}, {"id": "10.1016/j.ijfoodmicro.2021.109043", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:16:45Z", "type": "Journal Article", "created": "2021-01-08", "title": "Unraveling the emergence and population diversity of Listeria monocytogenes in a newly built meat facility through whole genome sequencing", "description": "The food processing environments of a newly opened meat processing facility were sampled in ten visits carried out during its first 1.5\u00a0years of activity and analyzed for the presence of Listeria monocytogenes. A total of 18 L. monocytogenes isolates were obtained from 229 samples, and their genomes were sequenced to perform comparative genomic analyses. An increase in the frequency of isolation of L. monocytogenes and in the diversity of sequence types (STs) detected was observed along time. Although the strains isolated belonged to six different STs (ST8, ST9, ST14, ST37, ST121 and ST155), ST9 was the most abundant (8 out of 18 strains). Low (0 and 2) single nucleotide polymorphism (SNP) distances were found between two pairs of ST9 strains isolated in both cases 3\u00a0months apart from the same processing room (Lm-1267 and Lm-1705, with a 2 SNPs distance in the core genome; Lm-1265 and Lm-1706, with a 0 SNPs distance), which suggests that these strains may be persistent L. monocytogenes strains in the food processing environment. Most strains showed an in silico attenuated virulence potential either through the truncation of InlA (in 67% of the isolates) or the absence of other virulence factors involved in cell adhesion or invasion. Twelve of the eighteen L. monocytogenes isolates contained a plasmid, which ranged in size from 4 to 87 Kb and harbored stress survival, in addition to heavy metals and biocides resistance determinants. Identical or highly similar plasmids were identified for various sets of L. monocytogenes ST9 isolates, which suggests the clonal expansion and persistence of plasmid-containing ST9 strains in the processing environments of the meat facility. Finally, the analysis of the L. monocytogenes genomes available in the NCBI database, and their associated metadata, evidenced that strains from ST9 are more frequently reported in Europe, linked to foods, particularly to meat and pork products, and less represented among clinical isolates than other L. monocytogenes STs. It also showed that the ST9 strains here isolated were more closely related to the European isolates, which clustered together and separated from ST9 North American isolates.", "keywords": ["0301 basic medicine", "Meat", "Food Handling", "Swine", "Virulence Factors", "Tecnolog\u00eda de los alimentos", "Food processing environment", "Persistence", "03 medical and health sciences", "Manufacturing and Industrial Facilities", "Floors and Floorcoverings", "Animals", "2. Zero hunger", "0303 health sciences", "Virulence", "Whole Genome Sequencing", "Genetic Variation", "Gen\u00e9tica", "Listeria monocytogenes", "Europe", "Genes", " Bacterial", "Whole genome sequencing", "Food Microbiology", "Equipment Contamination", "Disinfectants", "Plasmids"]}, "links": [{"href": "https://doi.org/10.1016/j.ijfoodmicro.2021.109043"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/International%20Journal%20of%20Food%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.ijfoodmicro.2021.109043", "name": "item", "description": "10.1016/j.ijfoodmicro.2021.109043", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.ijfoodmicro.2021.109043"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-01T00:00:00Z"}}, {"id": "10.1016/j.scitotenv.2014.05.019", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:17:04Z", "type": "Journal Article", "created": "2014-05-24", "title": "Soil Microbial Properties After Long-Term Swine Slurry Application To Conventional And No-Tillage Systems In Brazil", "description": "Swine waste can be used as an agricultural fertilizer, but large amounts may accumulate excess nutrients in soil or contaminate the surrounding environment. This study evaluated long-term soil amendment (15 years) with different levels of swine slurry to conventional (plow) tillage (CT) and no tillage (NT) soils. Long-term swine slurry application did not affect soil organic carbon. Some chemical properties, such as calcium, base saturation, and aluminum saturation were significantly different within and between tillages for various application rates. Available P and microbial parameters were significantly affected by slurry addition. Depending on tillage, soil microbial biomass and enzyme activity increased up to 120 m(3) ha(-1) year(-1) in all application rates. The NT system had higher microbial biomass and activity than CT at all application levels. There was an inverse relationship between the metabolic quotient (qCO2) and MBC, and the qCO2 was 53% lower in NT than CT. Swine slurry increased overall acid phosphatase activity, but the phosphatase produced per unit of microbial biomass decreased. A comparison of data obtained in the 3rd and 15th years of swine slurry application indicated that despite slurry application the CT system degraded with time while the NT system had improved values of soil quality indicators. For these Brazilian oxisols, swine slurry amendment was insufficient to maintain soil quality parameters in annual crop production without additional changes in tillage management.", "keywords": ["2. Zero hunger", "Swine", "Agriculture", "04 agricultural and veterinary sciences", "15. Life on land", "Waste Disposal", " Fluid", "6. Clean water", "Soil", "Animals", "0401 agriculture", " forestry", " and fisheries", "Fertilizers", "Brazil", "Soil Microbiology", "Environmental Monitoring"], "contacts": [{"organization": "Elcio L. Balota, Oswaldo Machineski, Karima I.A. Hamid, Ines F.U. Yada, Graziela M.C. Barbosa, Andre S. Nakatani, Mark S. Coyne,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.scitotenv.2014.05.019"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.scitotenv.2014.05.019", "name": "item", "description": "10.1016/j.scitotenv.2014.05.019", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.scitotenv.2014.05.019"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-08-01T00:00:00Z"}}, {"id": "10.1101/728261", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:19:08Z", "type": "Journal Article", "created": "2020-05-29", "title": "\"Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, \\\"\"Silenusvirus\\\"\".\"", "description": "AbstractBacteria of Lactobacillus sp. are very useful to humans. However, the biology and genomic diversity of their (bacterio)phage enemies remains understudied. Knowledge on Lactobacillus phage diversity should broaden to develop efficient phage control strategies. To this end, organic waste samples were screened for phages against two wine-related Lactobacillus plantarum strains. Isolates were shotgun sequenced and compared against the phage database and each other by phylogenetics and comparative genomics. The new isolates had only three distant relatives from the database, but displayed a high overall degree of genomic similarity amongst them. The latter allowed for the use of one isolate as a representative to conduct transmission electron microscopy and structural protein sequencing, and to study phage adsorption and growth kinetics. The microscopy and proteomics tests confirmed the observed diversity of the new isolates and supported their classification to the family Siphoviridae and the proposal of the new phage genus \uffe2\uff80\uff9cSilenusvirus\uffe2\uff80\uff9d.
", "keywords": ["0301 basic medicine", "0303 health sciences", "FRAMESHIFT", "Denmark", "BACTERIOPHAGES", "PROTEIN", "Wine", "Genome", " Viral", "Viral Plaque Assay", "SEQUENCE", "CLASSIFICATION", "Article", "12. Responsible consumption", "Microscopy", " Electron", "Waste Disposal Facilities", "03 medical and health sciences", "Bacteriolysis", "Species Specificity", "DNA", " Viral", "Bacteriophages", "Adsorption", "Phylogeny", "Lactobacillus plantarum"]}, "links": [{"href": "https://www.biorxiv.org/content/10.1101/728261v1.full.pdf"}, {"href": "https://doi.org/10.1101/728261"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Scientific%20Reports", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1101/728261", "name": "item", "description": "10.1101/728261", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1101/728261"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-08-07T00:00:00Z"}}, {"id": "10.1186/s40168-020-00941-7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:20:06Z", "type": "Journal Article", "created": "2020-11-19", "title": "Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms", "description": "Abstract BackgroundThe global threat of antimicrobial resistance (AMR) is a One Health problem impacted by antimicrobial use (AMU) for human and livestock applications. Extensive Iberian swine production is based on a more sustainable and eco-friendly management system, providing an excellent opportunity to evaluate how sustained differences in AMU impact the resistome, not only in the animals but also on the farm environment. Here, we evaluate the resistome footprint of an extensive pig farming system, maintained for decades, as compared to that of industrialized intensive pig farming by analyzing 105 fecal, environmental and slurry metagenomes from 38 farms.
ResultsOur results evidence a significantly higher abundance of antimicrobial resistance genes (ARGs) on intensive farms and a link between AMU and AMR to certain antimicrobial classes. We observed differences in the resistome across sample types, with a higher richness and dispersion of ARGs within environmental samples than on those from feces or slurry. Indeed, a deeper analysis revealed that differences among the three sample types were defined by taxa-ARGs associations. Interestingly, mobilome analyses revealed that the observed AMR differences between intensive and extensive farms could be linked to differences in the abundance of mobile genetic elements (MGEs). Thus, while there were no differences in the abundance of chromosomal-associated ARGs between intensive and extensive herds, a significantly higher abundance of integrons in the environment and plasmids, regardless of the sample type, was detected on intensive farms.
ConclusionsOverall, this study shows how AMU, production system, and sample type influence, mainly through MGEs, the profile and dispersion of ARGs in pig production.
", "keywords": ["0301 basic medicine", "Farms", "Sanidad animal", "Swine", "Antimicrobial resistance", "Microbial ecology", "Sustainable farming", "Cerdos", "Feces", "03 medical and health sciences", "Anti-Infective Agents", "Environmental Microbiology", "Animals", "Mobilome", "Antiinfecciosos", "One health", "2. Zero hunger", "Excrementos", "0303 health sciences", "Research", "QR100-130", "Drug Resistance", " Microbial", "15. Life on land", "Farm environment", "6. Clean water", "Genes", " Bacterial", "Animals", " Domestic", "2401.05 desarrollo Animal", "Metagenome", "Veterinaria"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1186/s40168-020-00941-7.pdf"}, {"href": "https://doi.org/10.1186/s40168-020-00941-7"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40168-020-00941-7", "name": "item", "description": "10.1186/s40168-020-00941-7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40168-020-00941-7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-19T00:00:00Z"}}, {"id": "10.1186/s12864-019-5692-3", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:20:05Z", "type": "Journal Article", "created": "2019-05-02", "title": "Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains", "description": "Oenococcus oeni is a lactic acid bacteria species adapted to the low pH, ethanol-rich environments of wine and cider fermentation, where it performs the crucial role of malolactic fermentation. It has a small genome and has lost the mutS-mutL DNA mismatch repair genes, making it a hypermutable and highly specialized species. Two main lineages of strains, named groups A and B, have been described to date, as well as other subgroups correlated to different types of wines or regions. A third group 'C' has also been hypothesized based on sequence analysis, but it remains controversial. In this study we have elucidated the species population structure by sequencing 14 genomes of new strains isolated from cider and kombucha and performing comparative genomics analyses.Sequence-based phylogenetic trees confirmed a population structure of 4 clades: The previously identified A and B, a third group 'C' consisting of the new cider strains and a small subgroup of wine strains previously attributed to group B, and a fourth group 'D' exclusively represented by kombucha strains. A pair of complete genomes from group C and D were compared to the circularized O. oeni PSU-1 strain reference genome and no genomic rearrangements were found. Phylogenetic trees, K-means clustering and pangenome gene clusters evidenced the existence of smaller, specialized subgroups of strains. Using the pangenome, genomic differences in stress resistance and biosynthetic pathways were found to uniquely distinguish the C and D clades.The obtained results, including the additional cider and kombucha strains, firmly established the O. oeni population structure. Group C does not appear as fully domesticated as group A to wine, but showed several unique patterns which may be due to ongoing specialization to the cider environment. Group D was shown to be the most divergent member of O. oeni to date, appearing as the closest to a pre-domestication state of the species.", "keywords": ["0301 basic medicine", "570", "Wine", "QH426-470", "Pan-genome", "Industrial microbiology", "630", "03 medical and health sciences", "Lactic acid bacteria", "Genetics", "[SDV.BV]Life Sciences [q-bio]/Vegetal Biology", "[SDV.BV] Life Sciences [q-bio]/Vegetal Biology", "Oenococcus", "Phylogeny", "2. Zero hunger", "0303 health sciences", "Genome", "Whole Genome Sequencing", "Comparative genomics", "Bacterial", "Phylogenomics", "Kombucha Tea", "Biodiversity", "15. Life on land", "Malus", "Oenococcus oeni", "TP248.13-248.65", "Genome", " Bacterial", "Biotechnology", "Research Article"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1186/s12864-019-5692-3.pdf"}, {"href": "https://doi.org/10.1186/s12864-019-5692-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/BMC%20Genomics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12864-019-5692-3", "name": "item", "description": "10.1186/s12864-019-5692-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12864-019-5692-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-05-02T00:00:00Z"}}, {"id": "10.1186/s40168-021-01131-9", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:20:06Z", "type": "Journal Article", "created": "2021-10-14", "title": "Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity", "description": "AbstractBackgroundThe microorganisms that inhabit food processing environments (FPE) can strongly influence the associated food quality and safety. In particular, the possibility that FPE may act as a reservoir of antibiotic-resistant microorganisms, and a hotspot for the transmission of antibiotic resistance genes (ARGs) is a concern in meat processing plants. Here, we monitor microbial succession and resistome dynamics relating to FPE through a detailed analysis of a newly opened pork cutting plant over 1.5 years of activity.
ResultsWe identified a relatively restricted principal microbiota dominated byPseudomonasduring the first 2 months, while a higher taxonomic diversity, an increased representation of other taxa (e.g.,Acinetobacter,Psychrobacter), and a certain degree of microbiome specialization on different surfaces was recorded later on. An increase in total abundance, alpha diversity, and \uffce\uffb2-dispersion of ARGs, which were predominantly assigned toAcinetobacterand associated with resistance to certain antimicrobials frequently used on pig farms of the region, was detected over time. Moreover, a sharp increase in the occurrence of extended-spectrum \uffce\uffb2-lactamase-producingEnterobacteriaceaeand vancomycin-resistantEnterococcaceaewas observed when cutting activities started. ARGs associated with resistance to \uffce\uffb2-lactams, tetracyclines, aminoglycosides, and sulphonamides frequently co-occurred, and mobile genetic elements (i.e., plasmids, integrons) and lateral gene transfer events were mainly detected at the later sampling times in drains.
ConclusionsThe observations made suggest that pig carcasses were a source of resistant bacteria that then colonized FPE and that drains, together with some food-contact surfaces, such as equipment and table surfaces, represented a reservoir for the spread of ARGs in the meat processing facility.
", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Bacteria", "Food Handling", "Swine", "Tecnolog\u00eda de los alimentos", "Research", "QR100-130", "610", "Food processing environments", "Antimicrobial resistance", "Gen\u00e9tica", "630", "Anti-Bacterial Agents", "Microbial ecology", "Red Meat", "03 medical and health sciences", "Genes", " Bacterial", "Pork Meat", "Animals", "Metagenomics"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1186/s40168-021-01131-9.pdf"}, {"href": "https://doi.org/10.1186/s40168-021-01131-9"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40168-021-01131-9", "name": "item", "description": "10.1186/s40168-021-01131-9", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40168-021-01131-9"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-14T00:00:00Z"}}, {"id": "10.1371/journal.pone.0108594", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:20:16Z", "type": "Journal Article", "created": "2014-09-29", "title": "Carbon Sequestration Efficiency Of Organic Amendments In A Long-Term Experiment On A Vertisol In Huang-Huai-Hai Plain, China", "description": "Soil organic carbon (SOC) sequestration is important for improving soil fertility of cropland and for the mitigation of greenhouse gas emissions to the atmosphere. The efficiency of SOC sequestration depends on the quantity and quality of the organic matter, soil type, and climate. Little is known about the SOC sequestration efficiency of organic amendments in Vertisols. Thus, we conducted the research based on 29 years (1982-2011) of long-term fertilization experiment with a no fertilizer control and five fertilization regimes: CK (control, no fertilizer), NPK (mineral NPK fertilizers alone), NPK+1/2W (mineral NPK fertilizers combined with half the amount of wheat straw), NPK+W (mineral NPK fertilizers combined with full the amount of wheat straw), NPK+PM (mineral NPK fertilizers combined with pig manure) and NPK+CM (mineral NPK fertilizers combined cattle manure). Total mean annual C inputs were 0.45, 1.55, 2.66, 3.71, 4.68 and 6.56 ton/ha/yr for CK, NPK, NPKW1/2, NPKW, NPKPM and NPKCM, respectively. Mean SOC sequestration rate was 0.20 ton/ha/yr in the NPK treatment, and 0.39, 0.50, 0.51 and 0.97 ton/ha/yr in the NPKW1/2, NPKW, NPKPM, and NPKCM treatments, respectively. A linear relationship was observed between annual C input and SOC sequestration rate (SOCsequestration rate \u200a=\u200a0.16 Cinput -0.10, R\u200a=\u200a0.95, P<0.01), suggesting a C sequestration efficiency of 16%. The Vertisol required an annual C input of 0.63 ton/ha/yr to maintain the initial SOC level. Moreover, the C sequestration efficiencies of wheat straw, pig manure and cattle manure were 17%, 11% and 17%, respectively. The results indicate that the Vertisol has a large potential to sequester SOC with a high efficiency, and applying cattle manure or wheat straw is a recommendable SOC sequestration practice in Vertisols.", "keywords": ["Carbon Sequestration", "China", "Glycine max", "Nitrogen", "Swine", "Science", "12. Responsible consumption", "Soil", "11. Sustainability", "Animals", "Fertilizers", "Triticum", "2. Zero hunger", "Q", "R", "Agriculture", "Phosphorus", "04 agricultural and veterinary sciences", "15. Life on land", "Carbon", "6. Clean water", "Manure", "13. Climate action", "Potassium", "Medicine", "0401 agriculture", " forestry", " and fisheries", "Cattle", "Research Article"], "contacts": [{"organization": "Daozhong Wang, Xisheng Guo, Zibin Guo, Keke Hua,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1371/journal.pone.0108594"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLoS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0108594", "name": "item", "description": "10.1371/journal.pone.0108594", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0108594"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-09-29T00:00:00Z"}}, {"id": "10.1371/journal.pone.0239629", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:20:18Z", "type": "Journal Article", "created": "2020-09-18", "title": "Cascade strategies for the full valorisation of Garganega white grape pomace towards bioactive extracts and bio-based materials", "description": "Agro-waste reduction and reuse are among the current main social challenges. In this perspective, the present research was aimed at the complete valorisation of Garganega grape pomace by recovering bioactive phenol extracts and by testing the solid fibre extract residues in composite formulation for packaging applications. The pomace was derived from white wine production, therefore, respect to red pomace, it was promptly removed from must after pressing, and its exploitation can be particularly interesting and valuable as still rich in active compounds. Phenol extracts were obtained both via solvent-based and pressurised liquid extractions and their phytochemical compositions were compared in terms of total amount of phenols, flavonoids, flavanols, anthocyanins, hydroxycinnamic acids, and reducing sugars. Antioxidant activity and detailed phenol profiles were also achieved. The highest phenol yield was obtained via solvent-based extraction with 75% acetone (v/v), solid/liquid ratio 1:5, 2h incubation at 50\u00b0C (77.9 gGAeq/kgDW). The fibrous solid residue of the extraction was characterized via thermogravimetric analysis and used for composite preparation by melt mixing with the renewable and biodegradable PHBV polymer through a green approach (solvent-less process). The composites resulted thermally stable at high temperatures, showing initial degradation processes only at temperatures higher than 250\u00b0C. Differential scanning calorimetry analyses were carried out to study melting and crystallization phenomena, while mechanical properties were investigated by tensile tests. The materials finally showed properties similar to those of the matrix. The bio-composites can be considered as an alternative to plain PHBV, since they are less expensive and eco-friendlier thanks to a reduced polymeric content, and they could represent a suitable way for full agro-waste exploitation.", "keywords": ["Flavonoids", "Agricultural Sciences", "Plant Extracts", "Science", "Q", "R", "Industrial Waste", "Wine", "Plant extracts", "04 agricultural and veterinary sciences", "02 engineering and technology", "Industrial waste", "Agriculture Forestry and Fisheries", "Food technology", "Antioxidants", "0404 agricultural biotechnology", "Phenols", "Waste Management", "Medicine", "Food Technology", "Vitis", "0210 nano-technology", "Antioxidants; Flavonoids; Food Technology; Phenols; Plant Extracts; Vitis; Waste Management; Wine; Industrial Waste", "Waste management", "Research Article"]}, "links": [{"href": "https://cris.unibo.it/bitstream/11585/793863/1/Monari%20et%20al%20PLOSONE%202020%20.pdf"}, {"href": "https://doi.org/10.1371/journal.pone.0239629"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20ONE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pone.0239629", "name": "item", "description": "10.1371/journal.pone.0239629", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pone.0239629"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-09-18T00:00:00Z"}}, {"id": "10.15201/hungeobull.69.3.2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:20:24Z", "type": "Journal Article", "created": "2020-10-02", "title": "Application of a topographic pedosequence in the Vill\u00e1ny Hills for terroir characterization", "description": "Terroir refers to the geographical origin of wines. The landscape factors (topography, parent rock, soil, microbial life, climate, natural vegetation) are coupled with cultural factors (cultivation history and technology, cultivars and rootstock) and all together define a terroir. The physical factors can be well visualized by a slope profile developed into a pedosequence showing the regular configuration of the relevant physical factors for a wine district. In the present study the generalized topographic pedosequence (or catena) and GIS spatial model of the Vill\uffc3\uffa1ny Hills, a historical wine producing region, serves for the spatial representation and characterization of terroir types. A survey of properties of Cabernet Franc grape juice allowed the comparison of 10 vineyards in the Vill\uffc3\uffa1ny Wine District, Southwest Hungary. Five grape juice properties (FAN, NH3, YAN, density and glucose + fructose content) have been found to have a moderate linear relationship (0.5 < r2 < 0.7) with the Huglin Index (HI) and aspect. Aspect, when determined on the basis of angular distance from South (180\uffc2\uffb0), showed a strong correlation (r2 > 0.7) with FAN, NH3, YAN, sugar and density and moderate correlation with primary amino nitrogen (PAN). HI showed a correlation with three nitrogen related parameters FAN, NH3, YAN, density and glucose + fructose content. Elevation and slope, however, did not correlate with any of the chemical properties.
", "keywords": ["2. Zero hunger", "Geography (General)", "wine reegion", "550", "grape juice properties", "Huglin Index", "terroir", "G Geography (General) / F\u00f6ldrajz \u00e1ltal\u00e1ban", "04 agricultural and veterinary sciences", "15. Life on land", "GIS", "S590 Soill / Talajtan", "gis", "01 natural sciences", "630", "GE Environmental Sciences / k\u00f6rnyezettudom\u00e1ny", "pedosequence", "G1-922", "0401 agriculture", " forestry", " and fisheries", "soils", "grapes", "grape juice", "huglin index", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.15201/hungeobull.69.3.2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Hungarian%20Geographical%20Bulletin", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.15201/hungeobull.69.3.2", "name": "item", "description": "10.15201/hungeobull.69.3.2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.15201/hungeobull.69.3.2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-02T00:00:00Z"}}, {"id": "10.1590/s0100-204x2010000500011", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:20:34Z", "type": "Journal Article", "created": "2010-08-04", "title": "Soil Carbon And Nitrogen Mineralization Caused By Pig Slurry Application Under Different Soil Tillage Systems", "description": "The objective of this work was to evaluate the change in soil C and N mineralization due to successive pig slurry application under conventional tillage (CT) and no tillage (NT) systems. The experiment was carried out in a clayey Latossolo Vermelho eutr\uffc3\uffb3fico (Rhodic Eutrudox) in Palotina, PR, Brazil. Increasing doses of pig slurry (0, 30, 60 and 120 m\uffc2\uffb3 ha-1 per year) were applied in both tillage systems, with three replicates. Half of the pig slurry was applied before summer soil preparation, and the other half before the winter crop season. The areas were cultivated with soybean (Glycine max L.) and maize (Zea mays L.) in the summers of 1998 and 1999, respectively, and with wheat (Triticum sativum Lam.) in the winters of both years. Soil samples were collected at 0-5, 5-10, and 10-20 cm depths. Under both CT and NT systems, pig slurry application increased C and N mineralization. However, increasing pig slurry additions decreased the C to N mineralization ratio. Under the NT system, C and N mineralization was greater than in CT system.
", "keywords": ["potential mineralization", "plantio convencional", "plantio direto", "no tillage", "swine manure", "potencial de mineraliza\u00e7\u00e3o", "conventional tillage", "0401 agriculture", " forestry", " and fisheries", "res\u00edduos de su\u00ednos", "nutrient cycling", "ciclagem de nutrientes", "04 agricultural and veterinary sciences"], "contacts": [{"organization": "Balota, Elcio Liborio, Machineski, Oswaldo, Truber, Priscila Viviane,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1590/s0100-204x2010000500011"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Pesquisa%20Agropecu%C3%A1ria%20Brasileira", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1590/s0100-204x2010000500011", "name": "item", "description": "10.1590/s0100-204x2010000500011", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1590/s0100-204x2010000500011"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-05-01T00:00:00Z"}}, {"id": "10.1590/s1415-43662012000500004", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:20:35Z", "type": "Journal Article", "created": "2012-04-28", "title": "Soil Microbial Biomass Under Different Tillage And Levels Of Applied Pig Slurry", "description": "ABSTRACT The objective of this work was to evaluate the changes in microbial biomass C, N and P due to the application of pig slurry under different soil tillage systems. The experiment was established in a clayey Oxisol, Eutrophic Red Latossol in Palotina, PR. Different quantities of pig slurry (0, 30, 60 and 120 m3 ha-1 year-1) were applied to the soil prior to the summer and winter crop season under conventional tillage (CT) and no tillage (NT), in three replicates. The area was cultivated with soybean (Glycine max L.) or maize (Zea mays L.) in the summer and wheat (Triticum sativum Lam.) or oat (Avena sativa L.) in the winter. The soil samples were collected in March and October of 1998 and 1999 at depths of 0-5, 5-10 and 10-20 cm. The soil tillage and pig slurry application influenced the microbial biomass C, N and P. The microbial biomass and the microbial activity presented high sensibility to detect changes in the soil due to tillage and the application of pig slurry. The soil microbial biomass and Cmic/Corg relation increased as the quantity of applied pig slurry increased. The metabolic quotient under CT increased with depth while under NT it decreased. The soil microbial biomass was enriched in N and P under NT and as the quantity of applied pig slurry increased.
", "keywords": ["2. Zero hunger", "plantio direto", "swine manure", "res\u00c3duos de su\u00c3nos", "0401 agriculture", " forestry", " and fisheries", "nutrient cycling", "ciclagem de nutrientes", "04 agricultural and veterinary sciences", "15. Life on land", "soil management", "microbial activity", "6. Clean water", "atividade microbiana"], "contacts": [{"organization": "Balota, Elcio L., Machineski, Oswaldo, Matos, Maria A.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1590/s1415-43662012000500004"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Revista%20Brasileira%20de%20Engenharia%20Agr%C3%ADcola%20e%20Ambiental", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1590/s1415-43662012000500004", "name": "item", "description": "10.1590/s1415-43662012000500004", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1590/s1415-43662012000500004"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-05-01T00:00:00Z"}}, {"id": "10.2134/jeq2004.2290", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:21:00Z", "type": "Journal Article", "created": "2010-06-14", "title": "Pig Slurry Application And Irrigation Effects On Nitrate Leaching In Mediterranean Soil Lysimeters", "description": "ABSTRACTLand application of animal manures, such as pig slurry (PS), is a common practice in intensive\uffe2\uff80\uff90farming agriculture. However, this practice has a pitfall consisting of the loss of nutrients, in particular nitrate, toward water courses. The objective of this study was to evaluate nitrate leaching for three application rates of pig slurry (50, 100, and 200 Mg ha\uffe2\uff88\uff921) and a control treatment of mineral fertilizer (275 kg N ha\uffe2\uff88\uff921) applied to corn grown in 10 drainage lysimeters. The effects of two irrigation regimes (low vs. high irrigation efficiency) were also analyzed. In the first two irrigation events, drainage NO3\uffe2\uff80\uff93N concentrations as high as 145 and 69 mg L\uffe2\uff88\uff921 were measured in the high and moderate PS rate treatments, respectively, in the low irrigation efficiency treatments. This indicates the fast transformation of the PS ammonium into nitrate and the subsequent leaching of the transformed nitrate. Drainage NO3\uffe2\uff80\uff93N concentration and load increased linearly by 0.69 mg NO3\uffe2\uff80\uff93N L\uffe2\uff88\uff921 and 4.6 kg NO3\uffe2\uff80\uff93N ha\uffe2\uff88\uff921, respectively, for each 10 kg N ha\uffe2\uff88\uff921 applied over the minimum of 275 kg N ha\uffe2\uff88\uff921 An increase in irrigation efficiency did not induce a significant increase of leachate concentration and the amount of nitrate leached decreased about 65%. Application of low PS doses before sowing complemented with sidedressing N application and a good irrigation management are the key factors to reduce nitrate contamination of water courses.
", "keywords": ["2. Zero hunger", "Nitrates", "Mediterranean Region", "Swine", "Agriculture", "04 agricultural and veterinary sciences", "01 natural sciences", "6. Clean water", "Manure", "Solubility", "Water Supply", "Animals", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Water Pollutants", "Fertilizers", "0105 earth and related environmental sciences"], "contacts": [{"organization": "A. Daud\u00e9n, D. Qu\u00edlez, M. V. Vera,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.2134/jeq2004.2290"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environmental%20Quality", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2134/jeq2004.2290", "name": "item", "description": "10.2134/jeq2004.2290", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2134/jeq2004.2290"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-11-01T00:00:00Z"}}, {"id": "10.2134/jeq2007.0427", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:21:01Z", "type": "Journal Article", "created": "2008-06-24", "title": "Greenhouse Gas Emissions From Two Soils Receiving Nitrogen Fertilizer And Swine Manure Slurry", "description": "AbstractThe interactive effects of soil texture and type of N fertility (i.e., manure vs. commercial N fertilizer) on N2O and CH4 emissions have not been well established. This study was conducted to assess the impact of soil type and N fertility on greenhouse gas fluxes (N2O, CH4, and CO2) from the soil surface. The soils used were a sandy loam (789 g kg\uffe2\uff88\uff921 sand and 138 g kg\uffe2\uff88\uff921 clay) and a clay soil (216 g kg\uffe2\uff88\uff921 sand, and 415 g kg\uffe2\uff88\uff921 clay). Chamber experiments were conducted using plastic buckets as the experimental units. The treatments applied to each soil type were: (i) control (no added N), (ii) urea\uffe2\uff80\uff90ammonium nitrate (UAN), and (iii) liquid swine manure slurry. Greenhouse gas fluxes were measured over 8 weeks. Within the UAN and swine manure treatments both N2O and CH4 emissions were greater in the sandy loam than in the clay soil. In the sandy loam soil N2O emissions were significantly different among all N treatments, but in the clay soil only the manure treatment had significantly higher N2O emissions. It is thought that the major differences between the two soils controlling both N2O and CH4 emissions were cation exchange capacity (CEC) and percent water\uffe2\uff80\uff90filled pore space (%WFPS). We speculate that the higher CEC in the clay soil reduced N availability through increased adsorption of NH4+ compared to the sandy loam soil. In addition the higher average %WFPS in the sandy loam may have favored higher denitrification and CH4 production than in the clay soil.
", "keywords": ["Greenhouse Effect", "2. Zero hunger", "Nitrogen", "Swine", "04 agricultural and veterinary sciences", "630", "6. Clean water", "12. Responsible consumption", "Manure", "Soil", "13. Climate action", "11. Sustainability", "Animals", "0401 agriculture", " forestry", " and fisheries", "Gases", "Fertilizers"], "contacts": [{"organization": "Jarecki, Marek K., Parkin, Timothy B., Chan, Alvarus S. K., Hatfield, Jerry L., Jones, Raymond,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.2134/jeq2007.0427"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environmental%20Quality", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2134/jeq2007.0427", "name": "item", "description": "10.2134/jeq2007.0427", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2134/jeq2007.0427"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-07-01T00:00:00Z"}}, {"id": "10.2134/jeq2009.0482", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:21:02Z", "type": "Journal Article", "created": "2010-08-24", "title": "Soil Nitrous Oxide Emissions Following Band-Incorporation Of Fertilizer Nitrogen And Swine Manure", "description": "Treatment of liquid swine manure (LSM) offers opportunities to improve manure nutrient management. However, N2O fluxes and cumulative emissions resulting from application of treated LSM are not well documented. Nitrous oxide emissions were monitored following band\uffe2\uff80\uff90incorporation of 100 kg N ha\uffe2\uff88\uff921 of either mineral fertilizer, raw LSM, or four pretreated LSMs (anaerobic digestion; anaerobic digestion + flocculation; filtration; decantation) at the four\uffe2\uff80\uff90leaf stage of corn (Zea mays L.). In a clay soil, a larger proportion of applied N was lost as N2O with the mineral fertilizer (average of 6.6%) than with LSMs (3.1\uffe2\uff80\uff935.0%), whereas in a loam soil, the proportion of applied N lost as N2O was lower with the mineral fertilizer (average of 0.4%) than with LSMs (1.2\uffe2\uff80\uff932.4%). Emissions were related to soil NO3 intensity in the clay soil, whereas they were related to water\uffe2\uff80\uff90extractable organic C in the loam soil. This suggests that N2O production was N limited in the clay soil and C limited in the loam soil, and would explain the interaction found between N sources and soil type. The large N2O emission coefficients measured in many treatments, and the contradicting responses among N sources depending on soil type, indicate that (i) the Intergovernmental Panel on Climate Change (IPCC) default value (1%) may seriously underestimate N2O emissions from fine\uffe2\uff80\uff90textured soils where fertilizer N and manure are band\uffe2\uff80\uff90incorporated, and (ii) site\uffe2\uff80\uff90specific factors, such as drainage conditions and soil properties (e.g., texture, organic matter content), have a differential influence on emissions depending on N source.
", "keywords": ["Manure", "2. Zero hunger", "Soil", "Nitrogen", "Swine", "13. Climate action", "Nitrous Oxide", "Animals", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Fertilizers", "6. Clean water"]}, "links": [{"href": "https://doi.org/10.2134/jeq2009.0482"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environmental%20Quality", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2134/jeq2009.0482", "name": "item", "description": "10.2134/jeq2009.0482", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2134/jeq2009.0482"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-09-01T00:00:00Z"}}, {"id": "10.2134/jeq2012.0352", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:21:03Z", "type": "Journal Article", "created": "2013-03-18", "title": "Biochar From Swine Solids And Digestate Influence Nutrient Dynamics And Carbon Dioxide Release In Soil", "description": "Large amounts of livestock manure solids are expected to become available in the near future due to the development of technologies for the separation of the solid fraction of animal effluents. The charring of manure solids for biochar (BC) production represents an opportunity for recycling organic matter (OM) of high nutrient value. The objectives of this study were to evaluate the suitability of BC from swine solids (SS) to improve soil fertility through nutrient supply and decomposition of the OM incorporated into soil and to verify a possible interaction effect on soil nutrient dynamics between digestate application and soil amendment with BC. We monitored at laboratory scale the soil mineral nitrogen (N) and Olsen phosphorus (P) content, and the cumulative carbon dioxide (CO-C) release in treatments with or without a supply of digestate obtained from a biogas plant. The experiment was performed in laboratory microcosms during a 3-mo incubation period. Compared treatments were soil amendments with SS, BC from SS, wood chip, BC from wood chip, and soil with no amendment, each of them with and without incorporation of digestate (10 treatments in total). Soil N levels were unaffected by BC amendments and only increased temporarily when digestate was applied to soil amended with SS or BC from SS. For the same N content, the BC from SS supplied much more P than the nontreated OM. The amount of cumulative CO-C released from soil with BC with or without digestate did not differ from that in the unamended control soil and was lower than that in the soils with noncharred amendments. Soil amendment with BC from SS does not modify soil N availability, whereas it increases the content of P available for crops and reduces the release of CO-C from digestate applied to soil for agricultural purposes.", "keywords": ["Manure", "2. Zero hunger", "Soil", "Nitrogen", "Swine", "Animals", "0401 agriculture", " forestry", " and fisheries", "Agriculture", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "6. Clean water"], "contacts": [{"organization": "Rosa Marchetti, Fabio Castelli,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.2134/jeq2012.0352"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environmental%20Quality", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2134/jeq2012.0352", "name": "item", "description": "10.2134/jeq2012.0352", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2134/jeq2012.0352"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-05-01T00:00:00Z"}}, {"id": "10.3389/fmicb.2019.00697", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:21:41Z", "type": "Journal Article", "created": "2019-04-09", "title": "Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must", "description": "Although there is an extensive tradition of research into the microbes that underlie the winemaking process, much remains to be learnt. We combined the high-throughput sequencing (HTS) tools of metabarcoding and metagenomics, to characterize how microbial communities of Riesling musts sampled at four different vineyards, and their subsequent spontaneously fermented derivatives, vary. We specifically explored community variation relating to three points: (i) how microbial communities vary by vineyard; (ii) how community biodiversity changes during alcoholic fermentation; and (iii) how microbial community varies between musts that successfully complete alcoholic fermentation and those that become 'stuck' in the process. Our metabarcoding data showed a general influence of microbial composition at the vineyard level. Two of the vineyards (4 and 5) had strikingly a change in the differential abundance of Metschnikowia. We therefore additionally performed shotgun metagenomic sequencing on a subset of the samples to provide preliminary insights into the potential relevance of this observation, and used the data to both investigate functional potential and reconstruct draft genomes (bins). At these two vineyards, we also observed an increase in non-Saccharomycetaceae fungal functions, and a decrease in bacterial functions during the early fermentation stage. The binning results yielded 11 coherent bins, with both vineyards sharing the yeast bins Hanseniaspora and Saccharomyces. Read recruitment and functional analysis of this data revealed that during fermentation, a high abundance of Metschnikowia might serve as a biocontrol agent against bacteria, via a putative iron depletion pathway, and this in turn could help Saccharomyces dominate the fermentation. During alcoholic fermentation, we observed a general decrease in biodiversity in both the metabarcoding and metagenomic data. Unexpected Micrococcus behavior was observed in vineyard 4 according to metagenomic analyses based on reference-based read mapping. Analysis of open reading frames using these data showed an increase of functions assigned to class Actinobacteria in the end of fermentation. Therefore, we hypothesize that bacteria might sit-and-wait until Saccharomyces activity slows down. Complementary approaches to annotation instead of relying a single database provide more coherent information true species. Lastly, our metabarcoding data enabled us to identify a relationship between stuck fermentations and Starmerella abundance. Given that robust chemical analysis indicated that although the stuck samples contained residual glucose, all fructose had been consumed, we hypothesize that this was because fructophilic Starmerella, rather than Saccharomyces, dominated these fermentations. Overall, our results showcase the different ways in which metagenomic analyses can improve our understanding of the wine alcoholic fermentation process.", "keywords": ["2. Zero hunger", "0301 basic medicine", "Microbial diversity", "0303 health sciences", "Wine", "15. Life on land", "shotgun sequencing", "Microbiology", "Shotgun sequencing", "QR1-502", "03 medical and health sciences", "alcoholic fermentation", "microbial diversity", "metabarcoding", "Metabarcoding", "Alcoholic fermentation", "wine", "SDG 2 - Zero Hunger"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2019.00697"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2019.00697", "name": "item", "description": "10.3389/fmicb.2019.00697", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2019.00697"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-04-09T00:00:00Z"}}, {"id": "10.3389/fmicb.2019.01347", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:21:41Z", "type": "Journal Article", "created": "2019-06-25", "title": "Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture", "description": "Microbial life usually takes place in a community where individuals interact, by competition for nutrients, cross-feeding, inhibition by end-products, but also by their spatial distribution. Lactic acid bacteria are prominent members of microbial communities responsible for food fermentations. Their niche in a community depends on their own properties as well as those of the other species. Here, we apply a computational approach, which uses only genomic and metagenomic information and functional annotation of genes, to find properties that distinguish a species from others in the community, as well as to follow individual species in a community. We analyzed isolated and sequenced strains from a kefir community, and metagenomes from wine fermentations. We demonstrate how the distinguishing properties of an organism lead to experimentally testable hypotheses concerning the niche and the interactions with other species. We observe, for example, that L. kefiranofaciens, a dominant organism in kefir, stands out among the Lactobacilli because it potentially has more amino acid auxotrophies. Using metagenomic analysis of industrial wine fermentations we investigate the role of an inoculated L. plantarum in malolactic fermentation. We observed that L. plantarum thrives better on white than on red wine fermentations and has the largest number of phosphotransferase system among the bacteria observed in the wine communities. Also, L. plantarum together with Pantoea, Erwinia, Asaia, Gluconobacter, and Komagataeibacter genera had the highest number of genes involved in biosynthesis of amino acids.", "keywords": ["0301 basic medicine", "metagenomics", "0303 health sciences", "microbial communities", "Microbial communities", "Wine", "Microbiology", "QR1-502", "Computational biology", "lactic acid bacteria", "03 medical and health sciences", "Kefir", "computational biology", "Lactic acid bacteria", "Metagenomics", "Genomes", "wine", "genomes"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2019.01347"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2019.01347", "name": "item", "description": "10.3389/fmicb.2019.01347", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2019.01347"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-06-25T00:00:00Z"}}, {"id": "10.3390/fermentation5010001", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-13T16:21:53Z", "type": "Journal Article", "created": "2018-12-20", "title": "Changes in the Composition of the Lactic Acid Bacteria Behavior and the Diversity of Oenococcus oeni Isolated from Red Wines Supplemented with Selected Grape Phenolic Compounds", "description": "Phenolic compounds are important components of wine and are known to have an impact on the physiology of wine microbes. The influence of specific sub-sets of phenolic compounds on the growth and metabolism of lactic acid bacteria (LAB) and on the diversity of Oenococcus oeni in inoculated and non-inoculated red wines was investigated during malolactic fermentation (MLF) and subsequent storage. Representative O. oeni strains from wines treated with flavonols and trans-resveratrol were isolated and analyzed by pulsed-field gel electrophoresis of rare restriction enzyme digests (REA-PFGE). 28 days after MLF initiation, strains from all samples had entered the death phase, except those supplemented with trans-resveratrol. In the non-inoculated samples, the onset of lactic acid production was apparently delayed by all compounds tested, except for the flavan-3-ols. Increased levels of phenolics also delayed citrate consumption in inoculated samples. PFGE analysis revealed 22 genetic profiles, and some profiles were characteristics of specific samples. The commercial starter used in the inoculated wines did not dominate during MLF. The effect of the phenolics studied was dependent on the origin and concentration of each as well, as the fermentation stage and whether the wines were inoculated. The effect of flavonols and trans-resveratrol seemed to be strain-dependent, which could have implications on the final quality of wines.
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