{"type": "FeatureCollection", "features": [{"id": "10.1007/s00442-013-2845-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:15:45Z", "type": "Journal Article", "created": "2013-12-20", "title": "Climate Change Interactions Affect Soil Carbon Dioxide Efflux And Microbial Functioning In A Post-Harvest Forest", "description": "Forest disturbances, including whole-tree harvest, will increase with a growing human population and its rising affluence. Following harvest, forests become sources of C to the atmosphere, partly because wetter and warmer soils (relative to pre-harvest) increase soil CO2 efflux. This relationship between soil microclimate and CO2 suggests that climate changes predicted for the northeastern US may exacerbate post-harvest CO2 losses. We tested this hypothesis using a climate-manipulation experiment within a recently harvested northeastern US forest with warmed (H; +2.5 \u00b0C), wetted (W; +23% precipitation), warmed + wetted (H+W), and ambient (A) treatments. The cumulative soil CO2 effluxes from H and W were 35% (P = 0.01) and 22% (P = 0.07) greater than A. However, cumulative efflux in H+W was similar to A and W, and 24% lower than in H (P = 0.02). These findings suggest that with higher precipitation soil CO2 efflux attenuates rapidly to warming, perhaps due to changes in substrate availability or microbial communities. Microbial function measured as CO2 response to 15 C substrates in warmed soils was distinct from non-warmed soils (P < 0.001). Furthermore, wetting lowered catabolic evenness (P = 0.04) and fungi-to-bacteria ratios (P = 0.03) relative to non-wetted treatments. A reciprocal transplant incubation showed that H+W microorganisms had lower laboratory respiration on their home soils (i.e., home substrates) than on soils from other treatments (P < 0.01). We inferred that H+W microorganisms may use a constrained suite of C substrates that become depleted in their 'home' soils, and that in some disturbed ecosystems, a precipitation-induced attenuation (or suppression) of soil CO2 efflux to warming may result from fine-tuned microbe-substrate linkages.", "keywords": ["2. Zero hunger", "Bacteria", "Climate", "Climate Change", "Fungi", "Temperature", "04 agricultural and veterinary sciences", "Carbon Dioxide", "Pennsylvania", "15. Life on land", "Trees", "Soil", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Ecosystem", "Soil Microbiology"], "contacts": [{"organization": "Marshall D. McDaniel, Mary Ann Bruns, Jason P. Kaye, Margot W. Kaye,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s00442-013-2845-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-013-2845-y", "name": "item", "description": "10.1007/s00442-013-2845-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-013-2845-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-12-21T00:00:00Z"}}, {"id": "10.1007/s10533-022-00920-0", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:15:59Z", "type": "Journal Article", "created": "2021-11-08", "title": "Too Much of a Good Thing? Inorganic Nitrogen (N) Inhibits Moss-Associated N2 Fixation But Organic N Can Promote It", "description": "<title>Abstract</title>         <p>Moss-associated nitrogen (N<sub>2</sub>) fixation is one of the main inputs of new N in pristine ecosystems that receive low amounts of atmospheric N deposition. Previous studies have shown that N<sub>2</sub> fixation is inhibited by inorganic N (IN) inputs, but if N<sub>2</sub> fixation in mosses is similarly affected by organic N (ON) remains unknown. Here, we assessed N<sub>2</sub> fixation in two dominant mosses in boreal forests (<italic>Pleurozium schreberi</italic> and <italic>Sphagnum capillifolium</italic>) in response to different levels of N, simulating realistic (up to 4 kg N ha<sup>\u22121</sup> yr<sup>\u22121</sup>) and extreme N deposition rates in pristine ecosystems (up to 20 kg N ha<sup>\u22121</sup> yr<sup>\u22121</sup>) of IN (NH<sub>4</sub>NO<sub>3</sub>) and ON (alanine and urea). We also assessed if N<sub>2</sub> fixation can recover from the N additions. In the realistic scenario, N<sub>2</sub> fixation was inhibited by increasing NH<sub>4</sub>NO<sub>3</sub> additions in <italic>P. schreberi</italic> but not in <italic>S. capillifolium</italic>, and alanine and urea stimulated N<sub>2</sub> fixation in both moss species. In contrast, in the extreme N additions, increasing N inputs inhibited N<sub>2</sub> fixation in both moss species and all N forms. Nitrogen fixation was more sensitive to N inputs in <italic>P. schreberi</italic> than in <italic>S. capillifolium</italic> and was higher in the recovery phase after the realistic compared to the extreme N additions. These results demonstrate that N<sub>2</sub> fixation in mosses is less sensitive to organic than inorganic N inputs and highlight the importance of considering different N forms and species-specific responses when estimating the impact of N inputs on ecosystem functions such as moss-associated N<sub>2</sub> fixation.</p>", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Sphagnum", "Nitrogen fixation", "Nitrogen pollution", "Organic nitrogen", "15. Life on land", "Cyanobacteria", "Feathermosses"]}, "links": [{"href": "https://doi.org/10.1007/s10533-022-00920-0"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biogeochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s10533-022-00920-0", "name": "item", "description": "10.1007/s10533-022-00920-0", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s10533-022-00920-0"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-11-08T00:00:00Z"}}, {"id": "10.1016/j.ijheh.2019.01.004", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:55Z", "type": "Journal Article", "created": "2019-02-06", "title": "The impact of on-site hospital wastewater treatment on the downstream communal wastewater system in terms of antibiotics and antibiotic resistance genes", "description": "This study quantified antibiotic and antibiotic resistance gene (ARG) concentrations in hospital and communal wastewaters as well as the influents and effluents of the receiving urban wastewater treatment plants (UWWTP) in two Dutch cities. In only one city, hospital wastewater was treated on-site using advanced technologies, including membrane bioreactor treatment (MBR), ozonation, granulated activated carbon (GAC) and UV-treatment. On-site hospital wastewater (HWW) treatment reduced gene presence of hospital-related antibiotic resistance genes and antibiotic concentrations in the receiving urban wastewater treatment plant. These findings support the need for on-site treatment of high-risk point sources of antibiotic resistance genes. 13 antibiotic resistance genes, Integrase Class 1 and 16S rRNA concentrations were quantified using multiplex quantitative real-time PCR (qPCR) assays and the presence and/or concentration of 711 antibiotics were analyzed. Hospital wastewater contained approximately 25% more antibiotics and gene concentrations between 0.4 log to 1.8-fold higher than communal wastewater (CWW). blaKPC and vanA could be identified as hospital-related genes and were reduced to under the limit of detection (LOD) during on-site treatment. Advanced on-site treatment removed between 0.5 and 3.6-fold more genes than conventional biological urban wastewater treatment (activated sludge). Advanced on-site treatment was able to eliminate 12 out of 19 detected antibiotics, while urban waste water treatment eliminated up to 1 (out of 21 detected). Different advanced treatment technologies were able to target different pollutants to varying extents, making sequential alignment more effective. MBR treatment was most efficient in antibiotic resistance gene reduction and ozonation in antibiotic reduction. blaKPC could only be detected in the influent of the urban wastewater treatment plant receiving untreated hospital wastewater. Similarly, vanA was only consistently detected in this treatment plant. These results indicate a positive effect of on-site treatment of hospital wastewater on the communal sewage system.", "keywords": ["0301 basic medicine", "0303 health sciences", "Drug Resistance", " Microbial", "Wastewater", "Waste Disposal", " Fluid", "Hospitals", "6. Clean water", "Anti-Bacterial Agents", "12. Responsible consumption", "3. Good health", "03 medical and health sciences", "Genes", " Bacterial", "13. Climate action", "11. Sustainability", "Water Pollutants", "Advanced wastewater treatment Contaminants of emerging concern Pharmafilter Antibiotic resistance"]}, "links": [{"href": "https://doi.org/10.1016/j.ijheh.2019.01.004"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/International%20Journal%20of%20Hygiene%20and%20Environmental%20Health", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.ijheh.2019.01.004", "name": "item", "description": "10.1016/j.ijheh.2019.01.004", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.ijheh.2019.01.004"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-05-01T00:00:00Z"}}, {"id": "10.1016/j.scitotenv.2023.161600", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:18:18Z", "type": "Journal Article", "created": "2023-01-18", "title": "Risk reductions during pyrene biotransformation and mobilization in a model plant-bacteria-biochar system", "description": "The productive application of motile microorganisms for degrading hydrophobic contaminants in soil is one of the most promising processes in modern remediation due to its sustainability and low cost. However, the incomplete biodegradation of the contaminants and the formation of the intermediary metabolites in the process may increase the toxicity in soil during bioremediation, and motile inoculants may mobilize the pollutants through biosorption. Therefore, controlling these factors should be a fundamental part of soil remediation approaches. The aim of this study was to evaluate the sources of risk associated with the cometabolism-based transformation of 14C-labeled pyrene by inoculated Pseudomonas putida G7 and identify ways to minimize risk. Our model scenario examined the increase in bioaccessibility to a distant source of contamination facilitated by sunflower (Helianthus annuus L.) roots. A biochar trap for mobilized pollutant metabolites and bacteria has also been employed. The experimental design consisted of pots filled with a layer of sand with 14C-labeled pyrene (88 mg kg-1) as a contamination focus located several centimeters from the inoculation point. Half of the pots included a biochar layer at the bottom. The pots were incubated in a greenhouse with sunflower plants and P. putida G7 bacteria. Pots with sunflower plants showed a higher biodegradation of pyrene, its mobilization as metabolites through the percolate and the roots, and bacterial mobilization toward the source of contamination, also resulting in increased pyrene transformation. In addition, the biochar layer efficiently reduced the concentrations of pyrene metabolites collected in the leachates. Therefore, the combination of plants, motile bacteria and biochar safely reduced the risk caused by the biological transformation of pyrene.", "keywords": ["Risk", "2. Zero hunger", "570", "Pyrenes", "Bacteria", "04 agricultural and veterinary sciences", "Plants", "01 natural sciences", "Polycyclic aromatic hydrocarbons", "6. Clean water", "Sunflower", "Soil", "Biodegradation", " Environmental", "13. Climate action", "Biodegradation", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Polycyclic Aromatic Hydrocarbons", "Bioremediation", "Biotransformation", "Soil Microbiology", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.scitotenv.2023.161600"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.scitotenv.2023.161600", "name": "item", "description": "10.1016/j.scitotenv.2023.161600", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.scitotenv.2023.161600"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-04-01T00:00:00Z"}}, {"id": "10.1007/s10750-009-9715-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:16:06Z", "type": "Journal Article", "created": "2009-02-13", "title": "Heterotrophic Nitrogen Fixation In Oligotrophic Tropical Marshes: Changes After Phosphorus Addition", "description": "In order to determine the impact of nutrient enrichment on phosphorus (P) limited wetlands, we established experimental P additions in marshes throughout northern Belize. P significantly increased macrophyte primary production, which led to the rapid elimination of cyanobacterial mats. The replacement of cyanobacterial mats by macrophytes constrained autotrophic nitrogen (N) fixation, increased the quantity, and changed the quality of organic matter input to the sediments. We predicted that the activity of sediment heterotrophic N fixers will be impacted by these alterations in carbon input. We used the acetylene reduction technique to measure potential (glucose amended) nitrogenase activity (NA) in sediments from controls and treatment plots that have been P enriched for four years and dominated either by Eleocharis cellulosa, or Typha domingensis for two years. NA in P-enriched plots was 2\u20133 orders of magnitude higher than NA in controls. NA was positively correlated with the soil reactive P, both total organic and microbial carbon, live root biomass, and total phospholipid fatty acids (PLFA) as an indicator of active microbial biomass. It was negatively correlated with the concentration of ammonium-N. Path analysis revealed that the indirect effect of P on NA through the root biomass was more important than the direct effect of P. NA of the upper sediment layer was consistently higher in Eleocharis than in Typha dominated plots, despite the higher litter input by Typha. We feel that the higher levels of lignin and phenolics occurring in Typha litter, relative to Eleocharis, constrained NA in Typha plots.", "keywords": ["0106 biological sciences", "Freshwater & Marine Ecology", "Salinity", "Ecology", "Life Sciences", "Phosphorus", "04 agricultural and veterinary sciences", "Aquatic Science", "15. Life on land", "Cyanobacteria", "Pollution", "01 natural sciences", "6. Clean water", "Environmental Science(all)", "13. Climate action", "Heterotrophic nitrogen fixation", "0401 agriculture", " forestry", " and fisheries", "Zoology", "Typha", "Eleocharis"], "contacts": [{"organization": "\u010cern\u00e1, Barbora, Rejm\u00e1nkov\u00e1, Eli\u0161ka, Snyder, Jenise M., \u0160antr\u016f\u010dkov\u00e1, Hana,", "roles": ["creator"]}]}, "links": [{"href": "https://escholarship.org/content/qt0xk5x7sm/qt0xk5x7sm.pdf"}, {"href": "https://doi.org/10.1007/s10750-009-9715-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Hydrobiologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s10750-009-9715-y", "name": "item", "description": "10.1007/s10750-009-9715-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s10750-009-9715-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-02-13T00:00:00Z"}}, {"id": "10.1007/s11104-013-1855-1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:16:16Z", "type": "Journal Article", "created": "2013-08-21", "title": "Soil Microorganisms Respond To Five Years Of Climate Change Manipulations And Elevated Atmospheric Co2 In A Temperate Heath Ecosystem", "description": "Soil microbial responses to global change can affect organic matter turnover and nutrient cycling thereby altering the overall ecosystem functioning. In a large-scale experiment, we investigated the impact of 5\u00a0years of climate change and elevated atmospheric CO2 on soil microorganisms and nutrient availability in a temperate heathland. The future climate was simulated by increased soil temperature (+0.3\u00a0\u00b0C), extended pre-summer drought (excluding 5\u20138\u00a0% of the annual precipitation) and elevated CO2 (+130\u00a0ppm) in a factorial design. Soil organic matter and nutrient pools were analysed and linked to microbial measures by quantitative PCR of bacteria and fungi, chloroform fumigation extraction, and substrate-induced respiration to assess their impact of climate change on nutrient availability. Warming resulted in higher measures of fungi and bacteria, of microbial biomass and of microbial growth potential, however, this did not reduce the availability of nitrogen or phosphorus in the soil. Elevated CO2 did not directly affect the microbial measures or nutrient pools, whereas drought shifted the microbial community towards a higher fungal dominance. Although we were not able to show strong interactive effects of the global change factors, warming and drought changed both nutrient availability and microbial community composition in the heathland soil, which could alter the ecosystem carbon and nutrient flow in the long-term.", "keywords": ["Bacterial abundance", "2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Soil nutrient pools", "Elevated carbon dioxide", "CLIMAITE", "Fungal abundance", "15. Life on land", "Real-time quantitative PCR", "6. Clean water", "Long-term ecosystem manipulation", "03 medical and health sciences", "13. Climate action", "11. Sustainability", "Deschampsia flexuosa"]}, "links": [{"href": "https://doi.org/10.1007/s11104-013-1855-1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-013-1855-1", "name": "item", "description": "10.1007/s11104-013-1855-1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-013-1855-1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-08-22T00:00:00Z"}}, {"id": "10.1007/s11104-018-3721-7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:16:18Z", "type": "Journal Article", "created": "2018-06-21", "title": "Identity of plant, lichen and moss species connects with microbial abundance and soil functioning in maritime Antarctica", "description": "We lack studies evaluating how the identity of plant, lichen and moss species relates to microbial abundance and soil functioning on Antarctica. If species identity is associated with soil functioning, distributional changes of key species, linked to climate change, could significantly affect Antarctic soil functioning.We evaluated how the identity of six Antarctic plant, lichen and moss species relates to a range of soil attributes (C, N and P cycling), microbial abundance and structure in Livingston Island, Maritime Antarctica. We used an effect size metric to predict the association between species (vs. bare soil) and the measured soil attributes.We observed species-specific effects of the plant and biocrust species on soil attributes and microbial abundance. Phenols, phosphatase and \u03b2-D-cellobiosidase activities were the most important attributes characterizing the observed patterns. We found that the evaluated species positively correlated with soil nutrient availability and microbial abundance vs. bare soil.We provide evidence, from a comparative study, that plant and biocrust identity is associated with different levels of soil functioning and microbial abundance in Maritime Antarctica. Our results suggest that changes in the spatial distribution of these species linked to climate change could potentially entail changes in the functioning of Antarctic terrestrial ecosystems.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "plants", "soil enzymology", "13. Climate action", "polymerase chain reaction", "XXXXXX - Unknown", "soil fungi", "14. Life underwater", "15. Life on land", "bacteria"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11104-018-3721-7.pdf"}, {"href": "https://doi.org/10.1007/s11104-018-3721-7"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-018-3721-7", "name": "item", "description": "10.1007/s11104-018-3721-7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-018-3721-7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-06-21T00:00:00Z"}}, {"id": "10.1007/s11104-022-05508-z", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:16:19Z", "type": "Journal Article", "created": "2022-06-22", "title": "Harnessing belowground processes for sustainable intensification of agricultural systems", "description": "Abstract <p>Increasing food demand coupled with climate change pose a great challenge to agricultural systems. In this review we summarize recent advances in our knowledge of how plants, together with their associated microbiota, shape rhizosphere processes. We address (molecular) mechanisms operating at the plant\uffe2\uff80\uff93microbe-soil interface and aim to link this knowledge with actual and potential avenues for intensifying agricultural systems, while at the same time reducing irrigation water, fertilizer inputs and pesticide use. Combining in-depth knowledge about above and belowground plant traits will not only significantly advance our mechanistic understanding of involved processes but also allow for more informed decisions regarding agricultural practices and plant breeding. Including belowground plant-soil-microbe interactions in our breeding efforts will help to select crops resilient to abiotic and biotic environmental stresses and ultimately enable us to produce sufficient food in a more sustainable agriculture in the upcoming decades.</p", "keywords": ["0301 basic medicine", "BIOLOGICAL NITRIFICATION INHIBITION", "PHOSPHATE SOLUBILIZING BACTERIA", "Plant-plant interaction", "Rhizobiome", "MEDIATED PH CHANGES", "Review Article", "Plant health", "MEMBRANE H+-ATPASE", "12. Responsible consumption", "03 medical and health sciences", "Soil health", "Soil structure", "C sequestration", "SDG 13 - Climate Action", "SDG 2 \u2013 Kein Hunger", "106026 Ecosystem research", "Plant nutrition", "SDG 2 - Zero Hunger", "2. Zero hunger", "0303 health sciences", "Water availability", "Root exudation", "JASMONIC ACID", "15. Life on land", "Microbes", "Intercropping", "106026 \u00d6kosystemforschung", "PLANT-GROWTH", "13. Climate action", "ROOT BORDER CELLS", "SDG 13 \u2013 Ma\u00dfnahmen zum Klimaschutz", "C cycling", "INNATE IMMUNITY", "NITROGEN-FIXATION", "ORGANIC-ACIDS"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1007/s11104-022-05508-z.pdf"}, {"href": "https://doi.org/10.1007/s11104-022-05508-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-022-05508-z", "name": "item", "description": "10.1007/s11104-022-05508-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-022-05508-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-06-22T00:00:00Z"}}, {"id": "10.1007/s11274-011-0809-0", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:16:21Z", "type": "Journal Article", "created": "2011-06-15", "title": "Soil Bacterial Community Composition And Diversity Respond To Cultivation In Karst Ecosystems", "description": "Soil microorganisms play vital roles in recovering and maintaining the health of ecosystems, particularly in fragile Karst ecosystems that are easily degraded after cultivation. We investigated the composition and diversity of soil bacterial communities, based on RFLP and 16S rDNA sequencing, in a cropland, a naturally revegetated land with former cultivation disturbance and a primeval forest in the subtropical Karst of southwest China. Our results illustrated that Proteobacteria accounted for 44.8% of the 600 tested clones, making it the most dominant phylum observed. This phylum was followed by Acidobacteria and Planctomycetes for the three Karst soils analyzed. Compared with the primeval forest soil, the proportions of Proteobacteria were decreased by 30.2 and 37.9%, while Acidobacteria increased by 93.9 and 87.9%, and the Shannon-Wiener diversity indices and the physicochemical parameters declined in the cropland and the revegetated land, respectively. Among the three soils, the proportion of dominant bacterial phyla and the diversity indices in the revegetated land were similar to the cropland, implying the bacterial community in the cropland was relatively stable, and the after-effects of cultivation were difficult to eliminate. However, similar distributions of the four Proteobacteria subphyla were observed between the revegetated land and the primeval forest soil. Furthermore, the proportion of Rhizobiales belonging to \u03b1-Proteobacteria was sharply decreased with cultivation compared to the primeval forest soil, while a small cluster of Rhizobiales recurred with vegetation recovery. These results indicated that although the subphyla of the dominant bacterial phylum had some positive responses to 20\u00a0years of vegetation recovery, it is a slow process. Our results suggest that priority should be given to conserve the primeval forest and inoculation of functional microorganisms on the basis of vegetation recovery may be more effective for the restoration of Karst ecosystems after cultivation.", "keywords": ["2. Zero hunger", "0301 basic medicine", "China", "0303 health sciences", "Bacteria", "Agriculture", "Biodiversity", "15. Life on land", "Trees", "RNA", " Bacterial", "Soil", "03 medical and health sciences", "RNA", " Ribosomal", " 16S", "Metagenome", "Ecosystem", "Phylogeny", "Polymorphism", " Restriction Fragment Length", "Soil Microbiology"], "contacts": [{"organization": "Xiangbi Chen, Ya-wei Wei, Wenxue Wei, Jinshui Wu, Yirong Su, Xunyang He,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s11274-011-0809-0"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/World%20Journal%20of%20Microbiology%20and%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11274-011-0809-0", "name": "item", "description": "10.1007/s11274-011-0809-0", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11274-011-0809-0"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-06-15T00:00:00Z"}}, {"id": "10.1007/s11356-016-6927-3", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:16:22Z", "type": "Journal Article", "created": "2016-05-27", "title": "Crop Residue Management And Fertilization Effects On Soil Organic Matter And Associated Biological Properties", "description": "Returning crop residue may result in nutrient reduction in soil in the first few years. A two-year field experiment was conducted to assess whether this negative effect is alleviated by improved crop residue management (CRM). Nine treatments (3 CRM and 3\u00a0N fertilizer rates) were used. The CRM treatments were (1) R0: 100\u00a0% of the N using mineral fertilizer with no crop residues return; (2) R: crop residue plus mineral fertilizer as for the R0; and (3) Rc: crop residue plus 83\u00a0% of the N using mineral and 17\u00a0% manure fertilizer. Each CRM received N fertilizer rates at 270, 360, and 450\u00a0kg\u00a0N\u00a0ha(-1) year(-1). At the end of the experiment, soil NO3-N was reduced by 33\u00a0% from the R relative to the R0 treatment, while the Rc treatment resulted in a 21 to 44\u00a0% increase in occluded particulate organic C and N, and 80\u00a0\u00b0C extracted dissolved organic N, 19 to 32\u00a0% increase in microbial biomass C and protease activity, and higher monounsaturated phospholipid fatty acid (PLFA):saturated PLFA ratio from stimulating growth of indigenous bacteria when compared with the R treatment. Principal component analysis showed that the Biolog and PLFA profiles in the three CRM treatments were different from each other. Overall, these properties were not influenced by the used N fertilizer rates. Our results indicated that application of 17\u00a0% of the total N using manure in a field with crop residues return was effective for improving potential plant N availability and labile soil organic matter, primarily due to a shift in the dominant microorganisms.", "keywords": ["Crops", " Agricultural", "2. Zero hunger", "Soil organic matter", "Minerals", "Enzymatic activity", "550", "Bacteria", "Agriculture", "04 agricultural and veterinary sciences", "15. Life on land", "630", "6. Clean water", "Manure", "Soil", "Fertilizer rate", "Biolog", "PLFA", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Fertilizers", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1007/s11356-016-6927-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20and%20Pollution%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11356-016-6927-3", "name": "item", "description": "10.1007/s11356-016-6927-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11356-016-6927-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-05-28T00:00:00Z"}}, {"id": "10.1016/j.still.2008.10.008", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:18:40Z", "type": "Journal Article", "created": "2008-12-06", "title": "Soil Microbial Communities Under Different Soybean Cropping Systems: Characterization Of Microbial Population Dynamics, Soil Microbial Activity, Microbial Biomass, And Fatty Acid Profiles", "description": "This work analyzes the direct effect of soil management practices on soil microbial communities, which may affect soil productivity and sustainability. The experimental design consisted of two tillage treatments: reduced tillage (RT) and zero tillage (ZT), and three crop rotation treatments: continuous soybean (SS), corn\u2013soybean (CS), and soybean\u2013corn (SC). Soil samples were taken at soybean planting and harvest. The following quantifications were performed: soil microbial populations by soil dilution plate technique on selective and semi-selective culture media; microbial respiration and microbial biomass by chloroform fumigation-extraction; microbial activity by fluorescein diacetate hydrolysis; and fatty acid methyl ester (FAME) profiles. Soil chemical parameters were also quantified. Soil organic matter content was significantly lower in RT and SS sequence crops, whereas soil pH and total N were significantly higher in CS and SC sequence crops. Trichoderma and Gliocladium populations were lower under RTSS and ZTSS treatments. Except in a few cases, soil microbial respiration, biomass and activity were higher under zero tillage than under reduced tillage, both at planting and harvest sampling times. Multivariate analyses of FAMEs clearly separated both RT and ZT management practices at each sampling time; however, separation of sequence crops was less evident. In our experiments ZT treatment had highest proportion of 10Me 16:0, an actinomycetes biomarker, and 16:1\u03c99 and 18:1\u03c97, two fatty acids associated with organic matter content and substrate availability. In contrast, RT treatment had highest content of branched biomarkers (i15:0 and i16:0) and of cy19:0, fatty acids associated with cell stasis and/or stress. As cultural practices can influence soil microbial populations, it is important to analyze the effect that they produce on biological parameters, with the aim of conserving soil richness over time. Thus, in a soybean-based cropping system, appropriate crop management is necessary for a sustainable productivity without reducing soil quality.", "keywords": ["2. Zero hunger", "Bacteria", "Cropping System", "Fungi", "Soybean Management", "04 agricultural and veterinary sciences", "15. Life on land", "Soil Microflora", "6. Clean water", "12. Responsible consumption", "https://purl.org/becyt/ford/4.1", "0401 agriculture", " forestry", " and fisheries", "https://purl.org/becyt/ford/4", "Microbial Diversity"], "contacts": [{"organization": "Meriles, Jose Manuel, Vargas Gil, Silvina, Conforto, Cinthia, Figoni, Gervasio, Lovera, Edgar, March, Guillermo Juan, Guzman, Carlos Alberto,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.still.2008.10.008"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20and%20Tillage%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.still.2008.10.008", "name": "item", "description": "10.1016/j.still.2008.10.008", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.still.2008.10.008"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-05-01T00:00:00Z"}}, {"id": "10.1007/s12275-012-2409-6", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:16:29Z", "type": "Journal Article", "created": "2012-11-03", "title": "Characterization Of The Bacterial And Archaeal Communities In Rice Field Soils Subjected To Long-Term Fertilization Practices", "description": "The bacterial and archaeal communities in rice field soils subjected to different fertilization regimes for 57 years were investigated in two different seasons, a non-planted, drained season (April) and a rice-growing, flooded season (August), by performing soil dehydrogenase assay, real-time PCR assay and pyrosequencing analysis. All fertilization regimes increased the soil dehydrogenase activity while the abundances of bacteria and archaea increased in the plots receiving inorganic fertilizers plus compost and not in those receiving inorganic fertilizers only. Rice-growing and flooding decreased the soil dehydrogenase activity while they increased the bacterial diversity in rice field soils. The bacterial communities were dominated by Chloroflexi, Proteobacteria, and Actinobacteria and the archaeal communities by Crenarchaeota at the phylum level. In principal coordinates analysis based on the weighted Fast UniFrac metric, the bacterial and archaeal communities were separated primarily by season, and generally distributed along with soil pH, the variation of which had been caused by long-term fertilization. Variations in the relative abundance according to the season or soil pH were observed for many bacterial and archaeal groups. In conclusion, the microbial activity, prokaryotic abundance and diversity, and prokaryotic community structure in the rice field soils were changed by season and long-term fertilization.", "keywords": ["DNA", " Bacterial", "0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Bacteria", "Molecular Sequence Data", "Agriculture", "Oryza", "15. Life on land", "Archaea", "6. Clean water", "Soil", "03 medical and health sciences", "RNA", " Ribosomal", " 16S", "Seasons", "Fertilizers", "Phylogeny", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1007/s12275-012-2409-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s12275-012-2409-6", "name": "item", "description": "10.1007/s12275-012-2409-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s12275-012-2409-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-10-01T00:00:00Z"}}, {"id": "10.1007/s12275-014-4129-6", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:16:29Z", "type": "Journal Article", "created": "2014-12-02", "title": "Effect Of Long-Term Different Fertilization On Bacterial Community Structures And Diversity In Citrus Orchard Soil Of Volcanic Ash", "description": "This study was conducted to assess bacterial species richness, diversity and community distribution according to different fertilization regimes for 16 years in citrus orchard soil of volcanic ash. Soil samples were collected and analyzed from Compost (cattle manure, 2,000 kg/10a), 1/2 NPK+compost (14-20-14+2,000 kg/10a), NPK+compost (28-40-28+2,000 kg/10a), NPK (28-40-28 kg/10a), 3 NPK (84-120-84 kg/10a), and Control (no fertilization) plot which have been managed in the same manners with compost and different amount of chemical fertilization. The range of pyrosequencing reads and OTUs were 4,687-7,330 and 1,790-3,695, respectively. Species richness estimates such as Ace, Chao1, and Shannon index were higher in 1/2 NPK+compost than other treatments, which were 15,202, 9,112, 7.7, respectively. Dominant bacterial groups at level of phylum were Proteobacteria, Acidobacteria, and Actinobacteria. Those were occupied at 70.9% in 1/2 NPK+compost. Dominant bacterial groups at level of genus were Pseudolabrys, Bradyrhizobium, and Acidobacteria. Those were distributed at 14.4% of a total of bacteria in Compost. Soil pH displayed significantly closely related to bacterial species richness estimates such as Ace, Chao1 (p<0.05) and Shannon index (p<0.01). However, it showed the negative correlation with exchangeable aluminum contents (p<0.05). In conclusion, diversity of bacterial community in citrus orchard soil was affected by fertilization management, soil pH changes and characteristics of volcanic ash.", "keywords": ["0301 basic medicine", "2. Zero hunger", "Citrus", "0303 health sciences", "Bacteria", "Agriculture", "Biodiversity", "Volcanic Eruptions", "15. Life on land", "Acidobacteria", "Actinobacteria", "Manure", "Soil", "03 medical and health sciences", "RNA", " Ribosomal", " 16S", "Proteobacteria", "Animals", "Cattle", "14. Life underwater", "Fertilizers", "Soil Microbiology", "Alphaproteobacteria"]}, "links": [{"href": "https://doi.org/10.1007/s12275-014-4129-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s12275-014-4129-6", "name": "item", "description": "10.1007/s12275-014-4129-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s12275-014-4129-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-11-29T00:00:00Z"}}, {"id": "10.1111/1462-2920.13842", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:20:27Z", "type": "Journal Article", "created": "2017-06-27", "title": "Identification and characterisation of isoprene-degrading bacteria in an estuarine environment", "description": "Summary<p>Approximately one\uffe2\uff80\uff90third of volatile organic compounds (VOCs) emitted to the atmosphere consists of isoprene, originating from the terrestrial and marine biosphere, with a profound effect on atmospheric chemistry. However, isoprene provides an abundant and largely unexplored source of carbon and energy for microbes. The potential for isoprene degradation in marine and estuarine samples from the Colne Estuary, UK, was investigated using DNA\uffe2\uff80\uff90Stable Isotope Probing (DNA\uffe2\uff80\uff90SIP). Analysis at two timepoints showed the development of communities dominated by Actinobacteria including members of the genera Mycobacterium, Rhodococcus, Microbacterium and Gordonia. Representative isolates, capable of growth on isoprene as sole carbon and energy source, were obtained from marine and estuarine locations, and isoprene\uffe2\uff80\uff90degrading strains of Gordonia and Mycobacterium were characterised physiologically and their genomes were sequenced. Genes predicted to be required for isoprene metabolism, including four\uffe2\uff80\uff90component isoprene monooxygenases (IsoMO), were identified and compared with previously characterised examples. Transcriptional and activity assays of strains growing on isoprene or alternative carbon sources showed that growth on isoprene is an inducible trait requiring a specific IsoMO. This study is the first to identify active isoprene degraders in estuarine and marine environments using DNA\uffe2\uff80\uff90SIP and to characterise marine isoprene\uffe2\uff80\uff90degrading bacteria at the physiological and molecular level.</p>", "keywords": ["0301 basic medicine", "570", "Volatile Organic Compounds", "0303 health sciences", "550", "Base Sequence", "610", "QR Microbiology", "Sequence Analysis", " DNA", "Environment", "6. Clean water", "Mixed Function Oxygenases", "Mycobacterium", "03 medical and health sciences", "Hemiterpenes", "13. Climate action", "Pentanes", "Butadienes", "Rhodococcus", "14. Life underwater", "Gordonia Bacterium", "Research Articles", "Genome", " Bacterial", "GE Environmental Sciences"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/63998/4/Published_manuscript.pdf"}, {"href": "http://onlinelibrary.wiley.com/wol1/doi/10.1111/1462-2920.13842/fullpdf"}, {"href": "https://doi.org/10.1111/1462-2920.13842"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.13842", "name": "item", "description": "10.1111/1462-2920.13842", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.13842"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-07-21T00:00:00Z"}}, {"id": "10.1016/j.actao.2021.103796", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-26T16:16:34Z", "type": "Journal Article", "created": "2021-10-26", "title": "Extreme freeze-thaw cycles do not affect moss-associated nitrogen fixation across a temperature gradient, but affect nutrient loss from mosses", "description": "Abstract   Moss-associated nitrogen (N2) fixation performed by epiphytic, N2-fixing bacteria (diazotrophs) contributes significantly to ecosystem N input in pristine habitats. While we have some understanding of the effects of climate warming on moss-associated N2 fixation, we lack data on effects of freeze-thaw cycles (FTCs) on diazotroph activity, although increased frequency of FTCs is predicted. We collected the widespread moss Pleurozium schreberi along a climate gradient (temperate, boreal, arctic) and exposed moss and associated diazotrophs to severe (20\u00a0\u00b0C difference, cycling between +10 and \u221210\u00a0\u00b0C) and mild (6\u00a0\u00b0C difference, \u00b13\u00a0\u00b0C) diurnal FTCs. We measured N2 fixation in mosses over 8 weeks and assessed their nutrient loss (fixed N2, total dissolved N, ammonium, phosphate) during the FTCs. We expected lower nitrogenase activity in mosses exposed to more severe FTCs and different sensitivities of N2 fixation towards FTCs along the climate gradient. However, no differences were found in N2 fixation between mild and severe FTCs, but N2 fixation in mosses from the temperate heath was less susceptible to FTCs than those from colder sites, suggesting adapted temperate diazotroph communities. Mosses lost little N, most at constant, positive temperatures, while more phosphate was lost from mosses exposed to FTCs, depending on the positioning along the climate gradient, mirroring nutrient demand and limitation. Our results show that moss-associated N2 fixation is less susceptible towards FTCs than expected but nutrient loss from moss carpets can increase following FTCs, with consequences for nutrient pools and fluxes.", "keywords": ["0106 biological sciences", "Diazotrophs", "13. Climate action", "Nutrient limitation", "Climate change", "0401 agriculture", " forestry", " and fisheries", "Phosphorus", "04 agricultural and veterinary sciences", "15. Life on land", "Cyanobacteria", "Acetylene reduction", "01 natural sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.actao.2021.103796"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Acta%20Oecologica", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.actao.2021.103796", "name": "item", "description": "10.1016/j.actao.2021.103796", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.actao.2021.103796"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-11-01T00:00:00Z"}}, {"id": "10.1016/j.agee.2022.107856", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:16:46Z", "type": "Journal Article", "created": "2022-01-11", "title": "A first-year melon/cowpea intercropping system improves soil nutrients and changes the soil microbial community", "description": "The melon/cowpea intercropping system can be a specific and efficient cropping pattern in a horticultural field. Intercropping systems contribute to the optimization of land use, fostering sustainable and efficient agriculture. This study entails a first-year comparative intercropping assay using cowpea (Vigna unguiculata) and melon (Cucumis melo) under organic management with different patterns and 30% less organic fertilization than usual in monocrops. We determined the soil nutrients, physicochemical properties, enzyme activities and microbes by high-throughput sequencing. We found that the intercropping system changed the bacterial community structure independently of the intercropping pattern. The bacterial community was characterized by a higher abundance of the phyla Proteobacteria and Bacteroidetes phyla and of the genus Pseudomonas, which are related to nutrient cycling, and by greater amounts of other beneficial microorganisms like Bacillus, Streptomyces and Sphingomonas. The intercropped systems significantly boosted the total nitrogen, available phosphorus and total organic carbon levels in addition to the melon yield. They also enhanced the acid phosphatase and \ufffd\ufffd-glucosidase activity compared to the melon monocrop. Results from this study suggest that melon/cowpea intercropping, starting from the first year, not only provides a stable supply of food and income due to the diversified cropping systems, but is also beneficial for the soil microbial community and environment.", "keywords": ["Melon", "2. Zero hunger", "Intercropping", "Nitrogen", "Cowpea", "Phosphorous", "0401 agriculture", " forestry", " and fisheries", "Bacterial community", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water"]}, "links": [{"href": "https://doi.org/10.1016/j.agee.2022.107856"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agriculture%2C%20Ecosystems%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agee.2022.107856", "name": "item", "description": "10.1016/j.agee.2022.107856", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agee.2022.107856"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-01T00:00:00Z"}}, {"id": "10.1016/j.apsoil.2017.09.041", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:00Z", "type": "Journal Article", "created": "2017-11-20", "title": "Ammonia-Oxidizing Archaea Are More Sensitive Than Ammonia-Oxidizing Bacteria To Long-Term Application Of Green Manure In Red Paddy Soil", "description": "Abstract   Growing winter green manure is an effective method for improving nitrogen (N) management in paddy fields to enhance rice production. Ammonia oxidization is a key process in N cycling in these soils, but effects of green manuring on ammonia oxidizers have not been fully addressed for red paddy soils. The objective of this study was to investigate long-term impacts of winter green manure on abundance and diversity of ammonia oxidizers in rice paddy soils of Southern China. The field experiment established in 1982 included four treatments: rice-rice-winter fallow (RRF), rice-rice-ryegrass (RRG), rice\u2013rice\u2013rape (RRP) and rice\u2013rice\u2013milk vetch (RRV). The abundance and diversity of amoA genes from ammonia-oxidizing archaea (AOA) and bacteria (AOB) were quantified using quantitative PCR and 454 pyrosequencing, respectively. The AOA were more abundant than AOB in red paddy soils, with ratios of AOA to AOB from 36 to 1686. Long-term application of milk vetch increased the abundance of both AOA and AOB after green manures were incorporated. Some of the relative abundances of most abundant operational taxonomic units (OTUs) of AOA increased and others decreased after application of green manures, while most abundant OTUs of AOB remained unaffected. Redundancy analysis (RDA) found a clear separation between milk vetch and winter fallow, indicating that the community structure of AOA was influenced by application of milk vetch. Phylogenetic analysis showed that the most dominant OTUs of AOA and AOB were affiliated with Nitrososphaera and Nitrosospira, respectively. In conclusion, in red paddy soil, long-term application of milk vetch increased the abundances of AOA and AOB after incorporated. Moreover, long-term application of green manures had more profound influences on AOA community than on AOB in red paddy soils.", "keywords": ["Ammonia-oxidizing bacteria", "0301 basic medicine", "2. Zero hunger", "03 medical and health sciences", "Paddy soil", "Green manure", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water", "Ammonia-oxidizing archaea"], "contacts": [{"organization": "Key Laboratory of Plant Nutrition and Fertilizer, Ministry of Agriculture/Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, China ( host institution ), Gao, Songjuan ( author ), Cao, Weidong ( author ), Zou, Chunqin ( author ), Gao, Jusheng ( author ), Huang, Jing ( author ), Bai, Jinshun ( author ), Zeng, Naohua ( author ), Shimizu, Katsu-yoshi ( author ), Wright, Alan ( UF author ), Dou, Fugen ( author ),", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2017.09.041"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2017.09.041", "name": "item", "description": "10.1016/j.apsoil.2017.09.041", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2017.09.041"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-03-01T00:00:00Z"}}, {"id": "10.1016/j.apsoil.2022.104649", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:00Z", "type": "Journal Article", "created": "2022-08-30", "title": "Effects of microplastics on common bean rhizosphere bacterial communities", "description": "Microplastic pollution in terrestrial ecosystems is a growing concern due to its potential influences on soil properties and crop growth. Little is known about the effects of microplastics on the microbiome in the rhizosphere. Here, we studied the effects of two types of microplastics (MPs), low density polyethylene (LDPE-MPs) and biodegradable microplastic (Bio-MPs) of poly-butylene-adipate-co-terephthalate (PBAT) mixed with polylactic acid (PLA), on rhizosphere bacterial communities of Phaseolus vulgaris at doses of 0.5 %, 1.0 % and 2.5 % (w/w, dry weight ratio between MPs and soil). Bio-MPs and LDPE-MPs showed significant higher \u03b1-diversity (Chao 1, ACE, Shannon and Simpson) than control. For each type of microplastic material, 2.5 % of LDPE-MPs and Bio-MPs showed lowest \u03b1-diversity as compared to doses of 0.5 % and 1.0 %, indicating 2.5 % dose of MPs might pose selective effect on rhizosphere bacterial communities. \u03b2-Diversity of 1.0 % and 2.5 % Bio-MPs were distinctive from the control and other treatments. Microplastics also affected the relative abundance at family level, i.e. as compared to control, Comamonadaceae was higher in all the MPs treatments, Rhizobiaceae was highest in 2.5 % LDPE-MPs and lowest in 2.5 % Bio-MPs. LefSe results showed, as compared to control, Bio-MPs induced more indictive taxa than LDPE-MPs. Our findings evidenced that LDPE-MPs and Bio-MPs exerted profound effects on rhizosphere bacterial communities, and these effects might have far-reaching effects on soil nutrient cycling and plant health in agroecosystems.", "keywords": ["2. Zero hunger", "0301 basic medicine", "03 medical and health sciences", "Low density polyethylene plastic", "13. Climate action", "Microplastics", "16S rRNA", "15. Life on land", "Biodegradable plastic", "Rhizosphere bacterial community", "01 natural sciences", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2022.104649"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2022.104649", "name": "item", "description": "10.1016/j.apsoil.2022.104649", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2022.104649"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-01T00:00:00Z"}}, {"id": "10.1016/j.bioelechem.2020.107621", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:03Z", "type": "Journal Article", "created": "2020-07-27", "title": "Tailored glycosylated anode surfaces: Addressing the exoelectrogen bacterial community via functional layers for microbial fuel cell applications", "description": "Grafting of aryldiazonium cations bearing a p-mannoside functionality over microbial fuel cell (MFC) anode materials was performed to investigate the ability of aryl-glycoside layers to regulate colonisation by biocatalytic biofilms. Covalent attachment was achieved via spontaneous reactions and via electrochemically-assisted grafting using potential step experiments. The effect of different functionalisation protocols on MFC performance is discussed in terms of changes in wettability, roughness and electrochemical response of modified electrodes. Water contact angle measurements (WCA) show that aryl-mannoside grafting yields a significant increase in hydrophilic character. Surface roughness determinations via atomic force microscopy (AFM) suggest a more disordered glycan adlayer when electrografting is used to facilitate chemisorption. MFCs were used as living sensors to successfully test the coated electrodes: the response of the MFCs in terms of start-up time was accelerated when compared to that of MFC equipped with non-modified electrodes, this suggests a faster development of a mature biofilm community resulting from aryldiazonium modifications, as confirmed by cyclic voltammetry of MFC anodes. These results therefore indicate that modification with glycans offers a bioinspired route to accelerating biofilm colonisation without any adverse effects on final MFC outputs.", "keywords": ["Microbial fuel cell", "Glycosylation", "Bacteria", "Bioelectric Energy Sources", "Surface Properties", "Microbiota", "02 engineering and technology", "Exoelectrogen biofilms", "540", "7. Clean energy", "01 natural sciences", "[SDV.BIO] Life Sciences [q-bio]/Biotechnology", "0104 chemical sciences", "Electricity", "[CHIM.OTHE] Chemical Sciences/Other", "Biofilms", "Aryl-mannoside layers", "Glycan adlayers", "0210 nano-technology", "Electrodes"]}, "links": [{"href": "https://doi.org/10.1016/j.bioelechem.2020.107621"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioelectrochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.bioelechem.2020.107621", "name": "item", "description": "10.1016/j.bioelechem.2020.107621", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.bioelechem.2020.107621"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-12-01T00:00:00Z"}}, {"id": "10.1016/j.biortech.2006.11.027", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:05Z", "type": "Journal Article", "created": "2007-01-06", "title": "Effect Of Long-Term Application Of Manure And Fertilizer On Biological And Biochemical Activities In Soil During Crop Development Stages", "description": "A field experiment was conducted to investigate the effect of six long-term (34-year) fertilizer and farmyard manure (FYM) treatments (Control, N, NP, NPK, NPK+S, NPK+FYM) and three physiological stages of wheat growth on the microbial biomass carbon (MBC), nitrogen (MBN) and dehydrogenase, mineralizable N and phosphatase activities in soil. It was found that a balanced application of NPK+FYM gave the highest values for the measured parameters and lowest at the control. Values were generally highest at tillering, followed by the flowering and dough stages. A significant positive interaction between fertilizer treatments and physiological stages of wheat growth was observed, being highest at maximum tillering due to application of NPK+FYM. Stepwise regressions have revealed that grain yield of wheat was significantly associated with mineralizable N at tillering (R(2)=0.80), MBC at flowering (R(2)=0.90) and alkaline phosphatase activity (R(2)=0.70) at dough stages of wheat growth.", "keywords": ["Crops", " Agricultural", "2. Zero hunger", "Time Factors", "Bacteria", "Nitrogen", "Fungi", "04 agricultural and veterinary sciences", "Carbon", "Phosphoric Monoester Hydrolases", "Manure", "Soil", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Fertilizers", "Oxidoreductases", "Soil Microbiology", "Triticum"]}, "links": [{"href": "https://doi.org/10.1016/j.biortech.2006.11.027"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioresource%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biortech.2006.11.027", "name": "item", "description": "10.1016/j.biortech.2006.11.027", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biortech.2006.11.027"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-12-01T00:00:00Z"}}, {"id": "10.1016/j.biortech.2012.08.124", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:05Z", "type": "Journal Article", "created": "2012-09-03", "title": "Comparing Environmental Consequences Of Anaerobic Mono- And Co-Digestion Of Pig Manure To Produce Bio-Energy - A Life Cycle Perspective", "description": "The aim of this work was to assess the environmental consequences of anaerobic mono- and co-digestion of pig manure to produce bio-energy, from a life cycle perspective. This included assessing environmental impacts and land use change emissions (LUC) required to replace used co-substrates for anaerobic digestion. Environmental impact categories considered were climate change, terrestrial acidification, marine and freshwater eutrophication, particulate matter formation, land use, and fossil fuel depletion. Six scenarios were evaluated: mono-digestion of manure, co-digestion with: maize silage, maize silage and glycerin, beet tails, wheat yeast concentrate (WYC), and roadside grass. Mono-digestion reduced most impacts, but represented a limited source for bio-energy. Co-digestion with maize silage, beet tails, and WYC (competing with animal feed), and glycerin increased bio-energy production (up to 568%), but at expense of increasing climate change (through LUC), marine eutrophication, and land use. Co-digestion with wastes or residues like roadside grass gave the best environmental performance.", "keywords": ["2. Zero hunger", "Swine", "emissions", "indirect land use change", "02 engineering and technology", "bioenergy", "Environment", "15. Life on land", "pig slurry", "renewable energy", "7. Clean energy", "6. Clean water", "Consequential LCA", "Refuse Disposal", "12. Responsible consumption", "Manure", "Bacteria", " Anaerobic", "13. Climate action", "Biofuels", "greenhouse gases", "11. Sustainability", "0202 electrical engineering", " electronic engineering", " information engineering", "systems", "Animals", "Methane"]}, "links": [{"href": "https://doi.org/10.1016/j.biortech.2012.08.124"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioresource%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biortech.2012.08.124", "name": "item", "description": "10.1016/j.biortech.2012.08.124", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biortech.2012.08.124"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-12-01T00:00:00Z"}}, {"id": "10.1016/j.biortech.2019.122728", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:06Z", "type": "Journal Article", "created": "2020-01-02", "title": "Effects of copper salts on performance, antibiotic resistance genes, and microbial community during thermophilic anaerobic digestion of swine manure", "description": "This study investigated methane production and ARGs reduction during thermophilic AD of swine manure with the addition of different Cu salts (cupric sulfate, cupric glycinate, and the 1:1 mixture of these two salts). Results showed methane production was increased by 28.78% through adding mixed Cu salts. The mixed Cu group effectively reduced total ARGs abundance by 26.94%, suggesting mixed Cu salts did not promote the potential ARGs risk. The positive effects of mixed Cu salts on AD performance and ARGs removal might be ascribed to the low bioavailability. Microbial community analysis indicated the highest abundances of Clostridia_MBA03 and Methanobacterium in the mixed Cu group might cause the increased methane production. Spearman's rank correlation analysis elucidated the succession in microbial community induced by environmental factors was the main driver for shaping ARGs profiles. Thus, mixed Cu salts could be an alternative to replace the inorganic Cu salt in animal feed additives.", "keywords": ["Manure", "Genes", " Bacterial", "Swine", "Microbiota", "Animals", "Drug Resistance", " Microbial", "Anaerobiosis", "01 natural sciences", "Copper", "6. Clean water", "Anti-Bacterial Agents", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.biortech.2019.122728"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioresource%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biortech.2019.122728", "name": "item", "description": "10.1016/j.biortech.2019.122728", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biortech.2019.122728"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-03-01T00:00:00Z"}}, {"id": "10.1016/j.cej.2022.135748", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:10Z", "type": "Journal Article", "created": "2022-03-19", "title": "Evaluating bioelectrochemically-assisted constructed wetland (METland\u00ae) for treating wastewater: Analysis of materials, performance and electroactive communities", "description": "METland\u00ae technology consists of a bioengineering strategy for treating wastewater by integrating microbial electrochemical concepts into constructed wetland systems to enhance pollutants removal. In this context, we have constructed planted (Iris sibirica) biofilters to assess the impact of different electrically conductive bed materials (electroconductive coke, electroconductive biochar, non-electroconductive biochar and gravel) by analyzing the (i) wastewater treatment efficiency (COD and nitrogen removal), (ii) bioelectrochemical response, and (iii) diversity of microbial communities. Electrically conductive materials outperformed non-conductive ones allowing removal rates as high as 175-180 gCOD/bed*m3 day capable to support footprint as low 0.4 m2/pe. In contrast, the highest nitrogen removal rates were achieved with non-conductive biochar in presence of plants (80 %) regardless the anoxic conditions of the assay. This was confirmed by the presence of annamox bacteria like Planctomycetes. Furthermore, the presence of a marked electric potential profile along the bed height in electroconductive materials together with redox pairs (cyclic voltammetry analysis) demonstrated an effective electron flow from bottom to uppermost layers of the bed (geoconductor mechanism). In electroconductive biochar, such effective conductivity-based model co-exists with a geobattery mechanism due to presence of electroactive phenolic and carbonyl/quinone groups and/or microporosity. Microbial biodiversity analysis revealed the impact of plants just at the upper layers of the biofilters where roots and Rhizobium predominate. Bacteria from genus Clostridium were dominant in gravel inert material; in contrast, bacteria from genus Geobacter (12%) and Trichococcus (30%) outcompete the rest of communities for an effective colonization of carbonaceous beds, suggesting their main role as part of the electrosyntrophies mechanism after METland\u00ae.", "keywords": ["Electroactive bacteria", "0301 basic medicine", "0303 health sciences", "Metland\u00ae", "Electroconductive biochar", "Wastewater treatment", "QD Chemistry", "6. Clean water", "Constructed wetland", "03 medical and health sciences", "13. Climate action", "Microbial electrochemistry", "TD Environmental technology. Sanitary engineering", "Qu\u00edmica F\u00edsica"]}, "links": [{"href": "https://doi.org/10.1016/j.cej.2022.135748"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemical%20Engineering%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.cej.2022.135748", "name": "item", "description": "10.1016/j.cej.2022.135748", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.cej.2022.135748"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-07-01T00:00:00Z"}}, {"id": "10.1016/j.cej.2019.02.012", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:10Z", "type": "Journal Article", "created": "2019-02-02", "title": "Heterogeneous photocatalysis using UVA-LEDs for the removal of antibiotics and antibiotic resistant bacteria from urban wastewater treatment plant effluents", "description": "Secondary urban wastewater samples were spiked with azithromycin (AZT), trimethoprim (TMP), ofloxacin (OFL) and<br> sulfamethoxazole (SMX) at 100 \u03bcg L\u22121 to investigate the efficiency of a TiO2-photocatalytic treatment using UVA-LEDs.<br> Different operating parameters were studied, such as the irradiation conditions, catalyst load and the use of methanol as<br> carrier solvent and radical scavenger. The most efficient conditions to treat spiked urban wastewater (4 LEDs symmetrically<br> distributed and 1.00 g L\u22121 of catalyst) were also assessed on the removal of the antibiotics at real concentrations,<br> as well as on the inactivation and regrowth of bacteria after 3-day storage (total and resistant heterotrophs,<br> Escherichia coli and enterococci). Clindamycin (CLI) was targeted when SMX was not detected. One-hour treatment was<br> enough to reduce the analysed antibiotics to values below the detection limits and to decrease the bacterial load by 2<br> log-units. Bacterial regrowth was observed for total heterotrophs, after the storage of photocatalytic treated wastewater,<br> to values close to pre-treatment. However, the antibiotic resistance percentage of such stored wastewater was always<br> similar or lower than that of secondary urban wastewater. Thus, the potential of this process as part of the tertiary<br> treatment is demonstrated, but conditions must be adjusted to minimize microbial regrowth.", "keywords": ["TiO2-P25", "Micropollutant", "Light emitting diodes (LEDs)", "Bacterial regrowth", "0211 other engineering and technologies", "02 engineering and technology", "01 natural sciences", "TiO-P25", "6. Clean water", "12. Responsible consumption", "Disinfection", "Antibiotic resistant bacteria", "11. Sustainability", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.cej.2019.02.012"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemical%20Engineering%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.cej.2019.02.012", "name": "item", "description": "10.1016/j.cej.2019.02.012", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.cej.2019.02.012"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-07-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2011.08.031", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:12Z", "type": "Journal Article", "created": "2011-09-22", "title": "Impact Of Biochar Application To A Mediterranean Wheat Crop On Soil Microbial Activity And Greenhouse Gas Fluxes", "description": "Biochar has been recently proposed as a management strategy to improve crop productivity and global warming mitigation. However, the effect of such approach on soil greenhouse gas fluxes is highly uncertain and few data from field experiments are available. In a field trial, cultivated with wheat, biochar was added to the soil (3 or 6 kg m(-2)) in two growing seasons (2008/2009 and 2009/2010) so to monitor the effect of treatments on microbial parameters 3 months and 14 months after char addition. N(2)O, CH(4) and CO(2) fluxes were measured in the field during the first year after char addition. Biochar incorporation into the soil increased soil pH (from 5.2 to 6.7) and the rates of net N mineralization, soil microbial respiration and denitrification activity in the first 3 months, but after 14 months treated and control plots did not differ significantly. No changes in total microbial biomass and net nitrification rate were observed. In char treated plots, soil N(2)O fluxes were from 26% to 79% lower than N(2)O fluxes in control plots, excluding four sampling dates after the last fertilization with urea, when N(2)O emissions were higher in char treated plots. However, due to the high spatial variability, the observed differences were rarely significant. No significant differences of CH(4) fluxes and field soil respiration were observed among different treatments, with just few exceptions. Overall the char treatments showed a minimal impact on microbial parameters and GHG fluxes over the first 14 months after biochar incorporation.", "keywords": ["Crops", " Agricultural", "Greenhouse Effect", "Nitrous Oxide", "Biochar; CH; 4; CO; 2; Denitrification; N; 2; O; Nitrification;", "630", "12. Responsible consumption", "Fertilizers", "Soil Microbiology", "Triticum", "2. Zero hunger", "CH4", "Bacteria", "N2O", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "Nitrification", "6. Clean water", "Biochar", "13. Climate action", "Charcoal", "Denitrification", "0401 agriculture", " forestry", " and fisheries", "CO2", "Gases", "Methane", "Environmental Monitoring"]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2011.08.031"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2011.08.031", "name": "item", "description": "10.1016/j.chemosphere.2011.08.031", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2011.08.031"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-11-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2019.02.158", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:13Z", "type": "Journal Article", "created": "2019-02-25", "title": "Bioreduction of selenate in an anaerobic biotrickling filter using methanol as electron donor", "description": "The anaerobic bioreduction of selenate, fed in step (up to 60\u202fmg.L-1) or continuous (\u223c7\u202fmg.L-1) trickling mode, in the presence of gas-phase methanol (4.3-50\u202fg\u202fm-3.h-1) was evaluated in a biotrickling filter (BTF). During the 48\u202fd of step-feed and 41\u202fd of continuous-feed operations, average selenate removal efficiencies (RE)\u202f>\u202f90% and \u223c68% was achieved, corresponding to a selenate reduction rate of, respectively, 7.3 and 4.5\u202fmg.L-1.d-1. During the entire period of BTF operation, 65.6% of the total Se fed as SeO42- was recovered. Concerning gas-phase methanol, the maximum elimination capacity (ECmax) was 46.4\u202fg\u202fm-3.h-1, with a RE\u202f>\u202f80%. Methanol was mainly utilized for acetogenesis and converted to volatile fatty acids (VFA) in the liquid-phase. Up to 5000\u202fmg.L-1 of methanol and 800\u202fmg.L-1 of acetate accumulated in the trickling liquid of the BTF.", "keywords": ["Bacteria", "Sewage", "Methanol", "0211 other engineering and technologies", "02 engineering and technology", "Selenic Acid", "Fatty Acids", " Volatile", "Archaea", "01 natural sciences", "6. Clean water", "Biodegradation", " Environmental", "Bioreactors", "Oxidation-Reduction", "Filtration", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2019.02.158"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2019.02.158", "name": "item", "description": "10.1016/j.chemosphere.2019.02.158", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2019.02.158"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-06-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2014.06.094", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:12Z", "type": "Journal Article", "created": "2014-08-13", "title": "Influence of tetracycline on the microbial community composition and activity of nitrifying biofilms", "description": "The present work aims to evaluate the bacterial composition and activity (carbon and nitrogen removal) of nitrifying biofilms exposed to 50 \u03bcg L(-1) of tetracycline. The tetracycline removal efficiency and the occurrence of tetracycline resistance (tet) genes were also studied. Two sequencing batch biofilm reactors (SBBRs) fed with synthetic wastewater were operated without (SBBR1) and with (SBBR2) the antibiotic. Both SBBRs showed similar organic matter biodegradation and nitrification activity. Tetracycline removal was about 28% and biodegradation was probably the principal removal mechanism of the antibiotic. Polymerase chain reaction-denaturing gradient gel electrophoresis analysis of the bacterial community showed shifts leading to not only the fading of some ribotypes, but also the emergence of new ones in the biofilm with tetracycline. The study of the tet genes showed that tet(S) was only detected in the biofilm with tetracycline, suggesting a relationship between its occurrence and the presence of the antibiotic.", "keywords": ["Science & Technology", "Polymers", "Microbiota", "Molecular Sequence Data", "Tetracycline Resistance", "0211 other engineering and technologies", "Resistance genes", "Sequence Analysis", " DNA", "02 engineering and technology", "Tetracycline", "Nitrification", "01 natural sciences", "6. Clean water", "Anti-Bacterial Agents", "Tetracycline removal", "Nitrifying biofilms", "Bacterial Proteins", "Antibiotics", "Biofilms", "11. Sustainability", "Bacterial community", "Adsorption", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2014.06.094"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2014.06.094", "name": "item", "description": "10.1016/j.chemosphere.2014.06.094", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2014.06.094"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-12-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2022.137472", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:13Z", "type": "Journal Article", "created": "2022-12-07", "title": "Assembled mixed co-cultures for emerging pollutant removal using native microorganisms from sewage sludge", "description": "The global pharmaceutical pollution caused by drug consumption (>100,000 tonnes) and its disposal into the environment is an issue which is currently being addressed by bioremediation techniques, using single or multiple microorganisms. Nevertheless, the low efficiency and the selection of non-compatible species interfere with the success of this methodology. This paper proposes a novel way of obtaining an effective multi-domain co-culture, with the capacity to degrade multi-pharmaceutical compounds simultaneously. To this end, seven microorganisms (fungi and bacteria) previously isolated from sewage sludge were investigated to enhance their degradation performance. All seven strains were factorially mixed and used to assemble different artificial co-cultures. Consequently, 127 artificial co-cultures were established and ranked, based on their fitness performance, by using the BSocial analysis web tool. The individual strains were categorized according to their social behaviour, whose net effect over the remaining strains was defined as 'Positive', 'Negative' or 'Neutral'. To evaluate the emerging-pollutant degradation rate, the best 10 co-cultures, and those which contained the social strains were then challenged with three different Pharmaceutical Active compounds (PhACs): diclofenac, carbamazepine and ketoprofen. The co-cultures with the fungi Penicillium oxalicum XD-3.1 and Penicillium rastrickii were able to degrade PhACs. However, the highest performance (>80% degradation) was obtained by the minimal active microbial consortia consisting of both Penicillium spp., Cladosporium cladosporoides and co-existing bacteria. These consortia transformed the PhACs to derivate molecules through hydroxylation and were released to the media, resulting in a low ecotoxicity effect. High-throughput screening of co-cultures provides a quick, reliable and efficient method to narrow down suitable degradation co-cultures for emerging PhAC contaminants while avoiding toxic metabolic derivatives.", "keywords": ["Sewage", "Bacteria", "Fungi", "HTGrowth", "Waste Disposal", " Fluid", "01 natural sciences", "Coculture Techniques", "6. Clean water", "12. Responsible consumption", "Biodegradation", " Environmental", "Pharmaceutical Preparations", "13. Climate action", "Environmental Pollutants", "BSocial", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2022.137472"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2022.137472", "name": "item", "description": "10.1016/j.chemosphere.2022.137472", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2022.137472"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-02-01T00:00:00Z"}}, {"id": "10.1016/j.copbio.2021.11.009", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-26T16:17:14Z", "type": "Journal Article", "created": "2021-12-23", "title": "Synthetic metabolism for biohalogenation", "description": "The pressing need for novel bioproduction approaches faces a limitation in the number and type of molecules accessed through synthetic biology. Halogenation is widely used for tuning physicochemical properties of molecules and polymers, but traditional halogenation chemistry often lacks specificity and generates harmful by-products. Here, we pose that deploying synthetic metabolism tailored for biohalogenation represents an unique opportunity towards economically attractive and environmentally friendly organohalide production. On this background, we discuss growth-coupled selection of functional metabolic modules that harness the rich repertoire of biosynthetic and biodegradation capabilities of environmental bacteria for in vivo biohalogenation. By rationally combining these approaches, the chemical landscape of living cells can accommodate bioproduction of added-value organohalides which, as of today, are obtained by traditional chemistry.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Biodegradation", " Environmental", "Bacteria", "Halogenation", "Synthetic Biology"]}, "links": [{"href": "https://doi.org/10.1016/j.copbio.2021.11.009"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Current%20Opinion%20in%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.copbio.2021.11.009", "name": "item", "description": "10.1016/j.copbio.2021.11.009", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.copbio.2021.11.009"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-01T00:00:00Z"}}, {"id": "10.1016/j.cryobiol.2024.104859", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-26T16:17:15Z", "type": "Journal Article", "created": "2024-02-07", "title": "Cryopreservation and recovery of a complex hypersaline microbial mat community", "description": "Cryopreservation of microorganisms is an essential tool in industrial- and food applications where conservation of microbial activity and critical beneficial traits need to be guaranteed to provide a consistent product or production process. This often refers to simple, single species or low diversity assemblages in liquid cultures that can easily be revived and regrown to perform the desired process. Cryopreservation is also of essence for scientific experimentation where many environmental samples are taken in remote sampling sites and at high costs. Biobanking, or the long term preservation and potential revival of complex, structured samples come with an additional challenge related to maintaining the structure upon revival. Here we look at cryopreserving and reviving a complex photosynthesis driven microbial mat from a hypersaline ecosystem. Amplicon sequencing of the 16S and 18S ribosomal RNA gene was used to determine the community composition of bacteria and eukaryotes respectively. The tests included the use of different cryopreservative agents and different times of cryopreservation at -150\u00a0\u00b0C. Upon revival, the cryopreservatives cannot be separated from the preserved samples without disturbing the community structure, while carryover of these compounds may influence reconstitution of the communities. Indeed, although both glycerol and Me2SO are good cryopreservatives of microbial assemblages, carryover of these compounds had a profound negative effect on the reestablishment of a functional microbial mat. Best cryopreservation and reconstitution results were obtained in the absence of a cryopreservative agent or when methanol was used.", "keywords": ["Cryopreservation", "0301 basic medicine", "2. Zero hunger", "0303 health sciences", "03 medical and health sciences", "Bacteria", "Photosynthesis", "Ecosystem", "Phylogeny", "6. Clean water", "Biological Specimen Banks"]}, "links": [{"href": "https://doi.org/10.1016/j.cryobiol.2024.104859"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Cryobiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.cryobiol.2024.104859", "name": "item", "description": "10.1016/j.cryobiol.2024.104859", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.cryobiol.2024.104859"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-03-01T00:00:00Z"}}, {"id": "10.1016/j.dib.2019.104394", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:15Z", "type": "Journal Article", "created": "2019-08-23", "title": "Experimental data of bio self-healing concrete incubated in saturated natural soil", "description": "The provision of suitable incubation environments is vital for successful implementation of bio self-healing concrete (bio-concrete). We investigated the effect of soil incubation to examine if the self-healing process can be activated in comparison with the conventional incubation environment (water). The data was collected from laboratory-scale experiments conducted on mortar specimens. The mortar was impregnated with Bacillus subtilis and this bacteria was encapsulated in calcium alginate for protection from the production process. The mortar specimens were mechanically cracked and then incubated within fine-grained fully saturated natural soil for about 4 weeks. The cracks were inspected before and after incubation by light microscopy to evaluate the healing ratio. The mineral precipitations on crack surfaces were examined by Scanning Electron Microscope (SEM) and Energy Dispersive X-Ray Spectrometry (EDX). The data reflects the efficiency of bio-concrete for certain structures such as tunnels and deep foundation, where concrete elements are exposed to ground conditions.", "keywords": ["Scanning Electron Microscope (SEM)", "Q1-390", "Soil incubation", "Science (General)", "Bacteria", "Computer applications to medicine. Medical informatics", "Energy Dispersive X-Ray Spectrometry (EDX)", "R858-859.7", "0211 other engineering and technologies", "Self-healing concrete", "02 engineering and technology", "Construction and Architecture", "6. Clean water"]}, "links": [{"href": "https://doi.org/10.1016/j.dib.2019.104394"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Data%20in%20Brief", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.dib.2019.104394", "name": "item", "description": "10.1016/j.dib.2019.104394", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.dib.2019.104394"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-10-01T00:00:00Z"}}, {"id": "10.1016/j.ejsobi.2013.10.007", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:23Z", "type": "Journal Article", "created": "2013-11-02", "title": "Effect Of Biochar Addition On Soil Microbial Community In A Wheat Crop", "description": "Biochar is known to enhance soil fertility and C sequestration, but relatively little information is currently available about its effect on soil microbial community, a component of terrestrial ecosystems that plays a key role in nutrient cycling. This study tested the effects of soil amendment with two loads of wood-derived biochar (30 and 60 t ha(-1)) in a wheat crop in Tuscany (Italy). Soil samples were collected 3 and 14 months after treatments over two successive growing seasons, and analysed for pH, total organic C (C-org), extractable C (C-ext), microbial biomass-C (C-mic), 25 specific microbial activities, mean substrate-induced respiration (mSIR) for 25 substrates, functional microbial diversity and bacterial genetic diversity. No significant effect of biochar treatment was observed on C-org, C-ext, C-mic, microbial quotient (C-mic % C-org) or genetic diversity. An increase in mSIR, some specific microbial activities and soil pH, and a significant change in functional diversity were observed 3 months after treatment. In contrast, no effect of biochar was detected 14 months after treatment for the parameters considered, except for a small but significant increase in pH. Our data suggest that biochar addition stimulated soil microbial activity without causing any apparent disturbance, but this positive effect was very short-lived. (C) 2013 Published by Elsevier Masson SAS.", "keywords": ["2. Zero hunger", "Soil management", "Wood-derived biochar", "Soil bacterial diversity; Soil management; Soil microbial activity; Soil microbial functional diversity; Wheat crop; Wood-derived biochar;", "Soil microbial functional diversity", "Wheat crop", "Soil microbial activity", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "Soil bacterial diversity", "15. Life on land", "6. Clean water"]}, "links": [{"href": "https://doi.org/10.1016/j.ejsobi.2013.10.007"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/European%20Journal%20of%20Soil%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.ejsobi.2013.10.007", "name": "item", "description": "10.1016/j.ejsobi.2013.10.007", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.ejsobi.2013.10.007"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-01-01T00:00:00Z"}}, {"id": "10.1016/j.envint.2018.03.044", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-26T16:17:26Z", "type": "Journal Article", "created": "2018-04-06", "title": "Antibiotic resistance in wastewater treatment plants: Tackling the black box", "description": "Wastewater is among the most important reservoirs of antibiotic resistance in urban environments. The abundance of carbon sources and other nutrients, a variety of possible electron acceptors such as oxygen or nitrate, the presence of particles onto which bacteria can adsorb, or a fairly stable pH and temperature are examples of conditions favouring the remarkable diversity of microorganisms in this peculiar habitat. The wastewater microbiome brings together bacteria of environmental, human and animal origins, many harbouring antibiotic resistance genes (ARGs). Although numerous factors contribute, mostly in a complex interplay, for shaping this microbiome, the effect of specific potential selective pressures such as antimicrobial residues or metals, is supposedly determinant to dictate the fate of antibiotic resistant bacteria (ARB) and ARGs during wastewater treatment. This paper aims to enrich the discussion on the ecology of ARB&ARGs in urban wastewater treatment plants (UWTPs), intending to serve as a guide for wastewater engineers or other professionals, who may be interested in studying or optimizing the wastewater treatment for the removal of ARB&ARGs. Fitting this aim, the paper overviews and discusses: i) aspects of the complexity of the wastewater system and/or treatment that may affect the fate of ARB&ARGs; ii) methods that can be used to explore the resistome, meaning the whole ARB&ARGs, in wastewater habitats; and iii) some frequently asked questions for which are proposed addressing modes. The paper aims at contributing to explore how ARB&ARGs behave in UWTPs having in mind that each plant is a unique system that will probably need a specific procedure to maximize ARB&ARGs removal.", "keywords": ["0301 basic medicine", "Bacteria", "Microbiota", "SWOT analysis", "Wastewater", "15. Life on land", "Wastewater treatment optimization", "01 natural sciences", "6. Clean water", "Water Purification", "12. Responsible consumption", "03 medical and health sciences", "Anti-Infective Agents", "13. Climate action", "Drug Resistance", " Bacterial", "11. Sustainability", "Animals", "Humans", "Antibiotic resistance monitoring", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.envint.2018.03.044"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environment%20International", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envint.2018.03.044", "name": "item", "description": "10.1016/j.envint.2018.03.044", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envint.2018.03.044"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-06-01T00:00:00Z"}}, {"id": "10.1016/j.envint.2019.03.060", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:26Z", "type": "Journal Article", "created": "2019-04-05", "title": "Characterization of wastewater effluents in the Danube River Basin with chemical screening, in vitro bioassays and antibiotic resistant genes analysis", "description": "Averaged 7-day composite effluent wastewater samples from twelve wastewater treatment plants (WWTPs) in nine countries (Romania, Serbia, Hungary, Slovenia, Croatia, Slovakia, Czechia, Austria, Germany) in the Danube River Basin were collected. WWTPs' selection was based on countries' dominant technology and a number of served population with the aim to get a representative holistic view of the pollution status. Samples were analyzed for 2248 chemicals of emerging concern (CECs) by wide-scope target screening employing LC-ESI-QTOF-MS. 280 compounds were detected at least in one sample and quantified. Spatial differences in the concentrations and distribution of the compounds classes were discussed. Additionally, samples were analyzed for the possible agonistic/antagonistic potencies using a panel of in vitro transactivation reporter gene CALUX\u00ae bioassays including ER\u03b1 (estrogenics), anti-AR (anti-androgens), GR (glucocorticoids), anti-PR (anti-progestins), PPAR\u03b1 and PPAR\u03b3 (peroxisome proliferators) and PAH assays. The potency of the wastewater samples to cause oxidative stress and induce xenobiotic metabolism was determined using the Nrf2 and PXR CALUX\u00ae bioassays, respectively. The signals from each of the bioassays were compared with the recently developed effect-based trigger values (EBTs) and thus allowed for allocating the wastewater effluents into four categories based on their measured toxicity, proposing a putative action plan for wastewater operators. Moreover, samples were analyzed for antibiotics and 13 antibiotic-resistant genes (ARGs) and one mobile genetic element (intl1) with the aim to assess the potential for antibiotic resistance. All data collected from these various types of analysis were stored in an on-line database and can be viewed via interactive map at https://norman-data.eu/EWW_DANUBE.", "keywords": ["0211 other engineering and technologies", "500", "Drug Resistance", " Microbial", "02 engineering and technology", "Wide-scope target screening", "Wastewater", "01 natural sciences", "Bioassays", "6. Clean water", "Anti-Bacterial Agents", "Environmental sciences", "Rivers", "13. Climate action", "Emerging substances", "Antibiotic resistant genes", "Effluent wastewater", "GE1-350", "Biological Assay", "Danube River Basin", "Emerging substances Wide-scope target screening Effluent wastewater Bioassays Antibiotic resistant genes Danube River Basin", "Water Pollutants", " Chemical", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.envint.2019.03.060"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environment%20International", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envint.2019.03.060", "name": "item", "description": "10.1016/j.envint.2019.03.060", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envint.2019.03.060"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-06-01T00:00:00Z"}}, {"id": "10.1016/j.envint.2020.106190", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:26Z", "type": "Journal Article", "created": "2020-10-26", "title": "Treated wastewater irrigation promotes the spread of antibiotic resistance into subsoil pore-water", "description": "In the present study, we investigated the impact of treated wastewater (TWW) irrigation on the prevalence of antibiotic resistance genes (ARGs) in subsoil pore-water, a so-far under-appreciated matrix. We hypothesized that TWW irrigation increases ARG prevalence in subsoil pore-water. This hypothesis was tested using a multiphase approach, which consisted of sampling percolated subsoil pore-water from lysimeter-wells of a real-scale TWW-irrigated field, operated for commercial farming practices, and controlled, laboratory microcosms irrigated with freshwater or TWW. We monitored the abundance of six selected ARGs (sul1, blaOXA-58, tetM, qnrS, blaCTX-M-32 and blaTEM), the intI1 gene associated with mobile genetic elements and an indicator for anthropogenic pollution and bacterial abundance (16S rRNA gene) by qPCR. The bacterial load of subsoil pore water was independent of both, irrigation intensity in the field study and irrigation water type in the microcosms. Among the tested genes in the field study, sul1 and intI1 exhibited constantly higher relative abundances. Their abundance was further positively correlated with increasing irrigation intensity. Controlled microcosm experiments verified the observed field study results: the relative abundance of several genes, including sul1 and intI1, increased significantly when irrigating with TWW compared to freshwater irrigation. Overall, TWW irrigation promoted the spread of ARGs and intI1 in the subsoil pore-water, while the bacterial load was maintained. The combined results from the real-scale agricultural field and the controlled lab microcosms indicate that the dissemination of ARGs in various subsurface environments needs to be taken into account during TWW irrigation scenarios.", "keywords": ["0301 basic medicine", "2. Zero hunger", "Agricultural Irrigation", "Antibiotic resistance", "Water", "Subsoil pore-water", "Drug Resistance", " Microbial", "Wastewater", "Wastewater reuse", "01 natural sciences", "6. Clean water", "Anti-Bacterial Agents", "Environmental sciences", "qPCR", "Soil", "03 medical and health sciences", "Genes", " Bacterial", "RNA", " Ribosomal", " 16S", "ARGs", "GE1-350", "Soil Microbiology", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.envint.2020.106190"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environment%20International", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envint.2020.106190", "name": "item", "description": "10.1016/j.envint.2020.106190", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envint.2020.106190"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-01-01T00:00:00Z"}}, {"id": "10.1016/j.eti.2023.103229", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:31Z", "type": "Journal Article", "created": "2023-06-02", "title": "Modeling biochar-soil depth dependency on fecal coliform straining under subsurface drip irrigation", "description": "Funding Information: This work was supported by Shahrekord University, Iran. N. Sepehrnia is funded by a Marie Sk\u0142odowska-Curie Individual Fellowship, United Kingdom under the grant agreement No. 101026287. We acknowledge University of Aberdeen, UK for supporting this project. ; Peer reviewed", "keywords": ["GE", "Soil Science", "610", "Plant Science", "04 agricultural and veterinary sciences", "01 natural sciences", "6. Clean water", "510", "Biochar", "Maximum allowable depletion", "0401 agriculture", " forestry", " and fisheries", "Mathematical modeling", "Irrigation strategy", "HYDRUS", "Soil bacteria contamination", "GE Environmental Sciences", "General Environmental Science", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.eti.2023.103229"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Technology%20%26amp%3B%20Innovation", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.eti.2023.103229", "name": "item", "description": "10.1016/j.eti.2023.103229", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.eti.2023.103229"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-08-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2016.01.007", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:28Z", "type": "Journal Article", "created": "2016-01-16", "title": "Effects Of Manure And Mineral Fertilization Strategies On Soil Antibiotic Resistance Gene Levels And Microbial Community In A Paddy-Upland Rotation System", "description": "This work investigated the responses of antibiotic resistance genes (ARGs) and the soil microbial community in a paddy-upland rotation system to mineral fertilizer (NPK) and different application dosages of manure combined with NPK. The occurrence of five tetracycline ARGs (tetA, tetB, tetC, tetG and tetW), two sulfonamide ARGs (sul1 and sul2) and one genetic element (IntI1) was quantified. NPK application showed only slight or no impact on soil ARGs abundances compared with the control without fertilizer. Soil ARGs abundances could be increased by manure-NPK application but was related to manure dosage (2250-9000 kg ha(-1)). Principal component analysis (PCA) showed that the soil ARG profile of the treatment with 9000 kg ha(-1) manure separated clearly from the other treatments; the ARGs that contributed most to the discrimination of this treatment were tetA, tetG, tetW, sul1, sul2 and IntI1. Community level physiological profile (CLPP) analysis showed that increasing manure dosage from 4500 kg ha(-1) to 9000 kg ha(-1) induced a sharp increase in almost all of the detected ARGs but would not change the microbial community at large. However, 9000 kg ha(-1) manure application produced a decline in soil microbial activity. Determination of antibiotics and heavy metals in soils suggested that the observed bloom of soil ARGs might associate closely with the accumulation of copper and zinc in soil.", "keywords": ["2. Zero hunger", "Minerals", "Rotation", "Agriculture", "Drug Resistance", " Microbial", "Oryza", "15. Life on land", "01 natural sciences", "6. Clean water", "Anti-Bacterial Agents", "Manure", "Soil", "Metals", " Heavy", "8. Economic growth", "Fertilizers", "Soil Microbiology", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2016.01.007"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2016.01.007", "name": "item", "description": "10.1016/j.envpol.2016.01.007", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2016.01.007"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-04-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2018.09.128", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:28Z", "type": "Journal Article", "created": "2018-09-28", "title": "A rationale for the high limits of quantification of antibiotic resistance genes in soil", "description": "The determination of values of abundance of antibiotic resistance genes (ARGs) per mass of soil is extremely useful to assess the potential impacts of relevant sources of antibiotic resistance, such as irrigation with treated wastewater or manure application. Culture-independent methods and, in particular, quantitative PCR (qPCR), have been regarded as suitable approaches for such a purpose. However, it is arguable if these methods are sensitive enough to measure ARGs abundance at levels that may represent a risk for environmental and human health. This study aimed at demonstrating the range of values of ARGs quantification that can be expected based on currently used procedures of DNA extraction and qPCR analyses. The demonstration was based on the use of soil samples spiked with known amounts of wastewater antibiotic resistant bacteria (ARB) (Enterococcus faecalis, Escherichia coli, Acinetobacter johnsonii, or Pseudomonas aeruginosa), harbouring known ARGs, and also on the calculation of expected values determined based on qPCR. The limits of quantification (LOQ) of the ARGs (vanA, qnrS, blaTEM, blaOXA, blaIMP, blaVIM) were observed to be approximately 4 log-units per gram of soil dry weight, irrespective of the type of soil tested. These values were close to the theoretical LOQ values calculated based on currently used DNA extraction methods and qPCR procedures. The observed LOQ values can be considered extremely high to perform an accurate assessment of the impacts of ARGs discharges in soils. A key message is that ARGs accumulation will be noticeable only at very high doses. The assessment of the impacts of ARGs discharges in soils, of associated risks of propagation and potential transmission to humans, must take into consideration this type of evidence, and avoid the simplistic assumption that no detection corresponds to risk absence.", "keywords": ["0301 basic medicine", "2. Zero hunger", "LOD - Limit of detection", "0303 health sciences", "Acinetobacter", "Drug Resistance", " Microbial", "Wastewater", "Real-Time Polymerase Chain Reaction", "6. Clean water", "Anti-Bacterial Agents", "3. Good health", "Manure", "Quantitative PCR", "Soil", "03 medical and health sciences", "Genes", " Bacterial", "13. Climate action", "Pseudomonas aeruginosa", "Enterococcus faecalis", "Escherichia coli", "LOQ - Limit of quantification", "Soil Microbiology", "Risk assessment"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2018.09.128"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2018.09.128", "name": "item", "description": "10.1016/j.envpol.2018.09.128", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2018.09.128"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-12-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2020.114002", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:29Z", "type": "Journal Article", "created": "2020-01-21", "title": "Elucidating biotransformation pathways of ofloxacin in lettuce (Lactuca sativa L)", "description": "Antibiotics can be uptaken by plants from soil desorption or directly from irrigation water, but their metabolization pathways in plants are largely unknown. In this paper, an analytical workflow based on high-resolution mass spectrometry was applied for the systematic identification of biotransformation products of ofloxacin in lettuce. The targeted metabolites were selected by comparing the mass chromatograms of exposed with control samples using an advanced spectra-processing method (Fragment Ion Search). The innovative methodology presented allowed us to identify a total of 11 metabolites, including 5 ofloxacin metabolites that are being reported for the first time in plants. Accordingly, major transformation pathways were proposed revealing insight into how ofloxacin and related chemicals are metabolized in lettuce. Furthermore, the influence of biotransformation on potential residual antimicrobial activity of identified compounds was discussed. Human exposure to antibiotics at doses below the minimum inhibitory concentrations is crucial in human risk assessment, including food ingestion; however, in the case of ofloxacin presented results reveal that plant metabolites should also be considered so as not to underestimate their risk.", "keywords": ["High-resolution mass spectrometry", "Ofloxacin", "0211 other engineering and technologies", "02 engineering and technology", "Biotransformation pathways", "01 natural sciences", "6. Clean water", "Anti-Bacterial Agents", "Antibiotics", "Humans", "Plant metabolites", "Biotransformation", "Lactuca", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2020.114002"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2020.114002", "name": "item", "description": "10.1016/j.envpol.2020.114002", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2020.114002"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-05-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2021.117927", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:29Z", "type": "Journal Article", "created": "2021-08-07", "title": "Groundwater antibiotic pollution and its relationship with dissolved organic matter: Identification and environmental implications", "description": "The occurrence of veterinary antibiotics and hydro-chemical parameters in eleven natural springs in a livestock production area is evaluated, jointly with the characterization of their DOM fingerprint by Orbitrap HRMS. Tetracycline and sulfonamide antibiotics were ubiquitous in all sites, and they were detected at low ng L-1 concentrations, except for doxycycline, that was present at \u03bcg L-1 in one location. DOM analysis revealed that most molecular formulas were CHO compounds (49 %-68\u00a0%), with a remarkable percentage containing nitrogen and sulphur (16 %-23\u00a0% and 11 %-24\u00a0%, respectively). Major DOM components were phenolic and highly unsaturated compounds (~90\u00a0%), typical for soil-derived organic matter, while approximately 11\u00a0% were unsaturated aliphatic, suggesting that springs may be susceptible to anthropogenic contamination sources. Comparing the DOM fingerprint among sites, the spring showing the most different profile was the one with surface water interaction and characterized by having lower CHO and higher CHOS formulas and aliphatic compounds. Correlations between antibiotics and DOM showed that tetracyclines positively correlate with unsaturated oxygen-rich substances, while sulfonamides relate with aliphatic and unsaturated oxygen-poor compounds. This indicates that the fate of different antibiotics will be controlled by the type of DOM present in groundwater.", "keywords": ["High-resolution mass spectrometry", "550", "Contaminants emergents en l'aigua", "Antibi\u00f2tics", "02 engineering and technology", "01 natural sciences", "630", "Soil", "Antibiotics", "Co-transport", "Groundwater -- Pollution", "Dissolved organic matter", "Groundwater", "0105 earth and related environmental sciences", "2. Zero hunger", "[SDU.OCEAN]Sciences of the Universe [physics]/Ocean", "Emerging contaminants in water", "Atmosphere", "[SDU.OCEAN] Sciences of the Universe [physics]/Ocean", " Atmosphere", "[SDU.ENVI] Sciences of the Universe [physics]/Continental interfaces", " environment", "6. Clean water", "Anti-Bacterial Agents", "Water quality", "13. Climate action", "Aig\u00fces subterr\u00e0nies -- Contaminaci\u00f3", "[SDU.ENVI]Sciences of the Universe [physics]/Continental interfaces", "0210 nano-technology", "environment", "Water Pollutants", " Chemical", "Environmental Monitoring"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2021.117927"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2021.117927", "name": "item", "description": "10.1016/j.envpol.2021.117927", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2021.117927"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-11-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2022.120873", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:29Z", "type": "Journal Article", "created": "2022-12-15", "title": "Comparative selective pressure potential of antibiotics in the environment", "description": "To guide both environmental and public health policy, it is important to assess the degree of antibiotic resistance selection pressure under measured environmental concentrations (MECs), and to compare the efficacy of different mitigation strategies to minimize the spread of resistance. To this end, the resistance selection and enrichment potential due to antibiotic emissions into the environment must be analysed from a life cycle perspective, for a wide range of antibiotics, and considering variations in the underlying fitness costs between different resistance mutations and genes. The aim of this study is to consistently derive fitness cost-dependent minimum selective concentrations (MSCs) from readily available bacterial inhibition data and to build MSC-based species sensitivity distributions (SSDs). These are then used to determine antibiotic-specific resistance selection concentrations predicted to promote resistance in 5% of exposed bacterial species (RSC5). Using a previously developed competition model, we provide estimated MSC10 endpoints for 2,984 antibiotic and bacterial species combinations; the largest set of modelled MSCs available to date. Based on constructed SSDs, we derive RSC5 for 128 antibiotics with four orders of magnitude difference in their 'selective pressure potential' in the environment. By comparing our RSC5 to MECs, we highlight specific environmental compartments (e.g. hospital and wastewater effluents, lakes and rivers), as well as several antibiotics (e.g. ciprofloxacin, norfloxacin, enrofloxacin, and tetracycline), to be scrutinized for their potential role in resistance selection and dissemination. In addition to enabling comparative risk screening of the selective pressure potential of multiple antibiotics, our SSD-derived RSC5 provide the point of departure for calculating new life cycle-based characterization factors for antibiotics to compare mitigation strategies, thereby contributing towards a 'One-Health' approach to tackling the global antibiotic resistance crisis.", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Bacteria", "Antibiotic resistance", "Drug Resistance", " Microbial", "Tetracycline", "6. Clean water", "Anti-Bacterial Agents", "3. Good health", "Selection coefficient", "03 medical and health sciences", "Ciprofloxacin", "Species sensitivity distribution", "Fitness cost", "Life cycle impact assessment", "/dk/atira/pure/sustainabledevelopmentgoals/good_health_and_well_being; name=SDG 3 - Good Health and Well-being", "Minimum selective concentration", "Norfloxacin"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2022.120873"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2022.120873", "name": "item", "description": "10.1016/j.envpol.2022.120873", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2022.120873"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-02-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2023.121325", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:29Z", "type": "Journal Article", "created": "2023-02-22", "title": "Extracellular DNA includes an important fraction of high-risk antibiotic resistance genes in treated wastewaters", "description": "Wastewater treatment plants are among the main hotspots for the release of antibiotic resistance genes (ARGs) into the environment. ARGs in treated wastewater can be found in the intracellular DNA (iDNA) and in the extracellular DNA (eDNA). In this study, we investigated the fate and the distribution (either in eDNA or in iDNA) of ARGs in the treated wastewaters pre and post-disinfection by shotgun metagenomics. The richness of the intracellular resistome was found to be higher than the extracellular one. However, the latter included different high risk ARGs. About 11% of the recovered metagenome assembled genomes (MAGs) from the extracted DNA was positive for at least one ARG and, among them, several were positive for more ARGs. The high-risk ARG bacA was the most frequently detected gene among the MAGs. The disinfection demonstrated to be an important driver of the composition of the antibiotic resistomes. Our results demonstrated that eDNA represents an important fraction of the overall ARGs, including a number of high-risk ARGs, which reach the environment with treated wastewater effluents. The studied disinfections only marginally affect the whole antibiotic resistome but cause important shifts from intracellular to extracellular DNA, potentially threating human health.", "keywords": ["0301 basic medicine", "0303 health sciences", "Drug Resistance", " Microbial", "DNA", "Wastewater", "Antimicrobial resistance", "6. Clean water", "MAG", "Anti-Bacterial Agents", "Disinfection", "03 medical and health sciences", "13. Climate action", "Extracellular DNA", "Genes", " Bacterial", "Humans", "Metagenomics"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2023.121325"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2023.121325", "name": "item", "description": "10.1016/j.envpol.2023.121325", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2023.121325"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-04-01T00:00:00Z"}}, {"id": "10.1016/j.envres.2018.12.007", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:29Z", "type": "Journal Article", "created": "2018-12-06", "title": "Distribution of antibiotic resistance genes in soils and crops. A field study in legume plants (Vicia faba L.) grown under different watering regimes", "description": "Social concern has raised during the last years due to the development of antibiotic resistance hotspots in different environmental compartments, including the edible parts of crops. To assess the influence of the water quality used for watering, we collected samples from soil, roots, leaves and beans from the legume plant Vicia faba (broad beans) in three agricultural peri-urban plots (Barcelona, NE Spain), irrigated with either groundwater, river water, or reclaimed water. Antibiotic resistance genes (ARGs) sul1, tetM, qnrS1, blaCTX-M-32,blaOXA-58, mecA, and blaTEM were quantified by real-time PCR, along with 16S rDNA and intl1 sequences, as proxies for bacterial abundance and integron prevalence, respectively. Microbiome composition of all samples were analyzed by high-throughput DNA sequencing. Results show a gradient of bacterial species diversity and of ARG prevalence from highly diverse soil samples to microbially-poor beans and leaves, in which Rhizobiales essentially displaced all other groups, and that presented very small loads of ARGs and integron sequences. The data suggest that the microbiome and the associated resistome were likely influenced by agricultural practices and water quality, and that future irrigation water legal standards should consider the specific Physiology of the different crop plants.", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Agriculture", "Drug Resistance", " Microbial", "Fabaceae", "Wastewater", "15. Life on land", "6. Clean water", "Anti-Bacterial Agents", "Vicia faba", "Soil", "03 medical and health sciences", "Genes", " Bacterial", "Spain", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1016/j.envres.2018.12.007"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envres.2018.12.007", "name": "item", "description": "10.1016/j.envres.2018.12.007", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envres.2018.12.007"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-03-01T00:00:00Z"}}, {"id": "10.1016/j.envres.2024.118395", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:29Z", "type": "Journal Article", "created": "2024-02-01", "title": "Sustainable strategies: Nature-based solutions to tackle antibiotic resistance gene proliferation and improve agricultural productivity and soil quality", "description": "The issue of antibiotic resistance is now recognized by the World Health Organisation (WHO) as one of the major problems in human health. Although its effects are evident in the healthcare settings, the root cause should be traced back to the One Health link, extending from animals to the environment. In fact, the use of organic fertilizers in agroecosystems represents one, if not the primary, cause of the introduction of antibiotics and antibiotic-resistant bacteria into the soil. Since the concentrations of antibiotics introduced into the soil are residual, the agroecosystem has become a perfect environment for the selection and proliferation of antibiotic resistance genes (ARGs). The continuous influx of these emerging contaminants (i.e., antibiotics) into the agroecosystem results in the selection and accumulation of ARGs in soil bacteria, occasionally giving rise to multi-resistant bacteria. These bacteria may harbour ARGs related to various antibiotics on their plasmids. In this context, these bacteria can potentially enter the human sphere when individuals consume food from contaminated agroecosystems, leading to the acquisition of multi-resistant bacteria. Once introduced into the nosocomial environment, these bacteria pose a significant threat to human health. In this review, we analyse how the use of digestate as an organic fertilizer can mitigate the spread of ARGs in agroecosystems. Furthermore, we highlight how, according to European guidelines, digestate can be considered a Nature-Based Solution (NBS). This NBS not only has the ability to mitigate the spread of ARGs in agroecosystems but also offers the opportunity to further improve Microbial-Based Solutions (MBS), with the aim of enhancing soil quality and productivity.", "keywords": ["Manure", "Soil", "Bacteria", "Genes", " Bacterial", "agroecosystem; digestate; one health; microbial-based solutions", "Animals", "Humans", "Drug Resistance", " Microbial", "Soil Microbiology", "Anti-Bacterial Agents", "Cell Proliferation"]}, "links": [{"href": "https://doi.org/10.1016/j.envres.2024.118395"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envres.2024.118395", "name": "item", "description": "10.1016/j.envres.2024.118395", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envres.2024.118395"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-05-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2016.03.008", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:18:30Z", "type": "Journal Article", "created": "2016-03-26", "title": "Soil microbial carbon use efficiency and biomass turnover in a long-term fertilization experiment in a temperate grassland", "description": "<p>Soil microbial carbon use efficiency (CUE), defined as the ratio of organic C allocated to growth over organic C taken up, strongly affects soil carbon (C) cycling. Despite the importance of the microbial CUE for the terrestrial C cycle, very little is known about how it is affected by nutrient availability. Therefore, we studied microbial CUE and microbial biomass turnover time in soils of a long-term fertilization experiment in a temperate grassland comprising five treatments (control, PK, NK, NP, NPK). Microbial CUE and the turnover of microbial biomass were determined using a novel substrate-independent method based on incorporation of <sup>18</sup>O from labeled water into microbial DNA. Microbial respiration was 28-37% smaller in all three N treatments (NK, NP, and NPK) compared to the control, whereas the PK treatment did not affect microbial respiration. N-fertilization decreased microbial C uptake, while the microbial growth rate was not affected. Microbial CUE ranged between 0.31 and 0.45, and was 1.3- to 1.4-fold higher in the N-fertilized soils than in the control. The turnover time ranged between 80 and 113 days and was not significantly affected by fertilization. Net primary production (NPP) and the abundance of legumes differed strongly across the treatments, and the fungal:bacterial ratio was very low in all treatments. Structural equation modeling revealed that microbial CUE was exclusively controlled by N fertilization and that neither the abundance of legumes (as a proxy for the quality of the organic matter inputs) nor NPP (as a proxy for C inputs) had an effect on microbial CUE. Our results show that N fertilization did not only decrease microbial respiration, but also microbial C uptake, indicating that less C was intracellularly processed in the N fertilized soils. The reason for reduced C uptake and increased CUE in the N-fertilization treatments is likely an inhibition of oxidative enzymes involved in the degradation of aromatic compounds by N in combination with a reduced energy requirement for microbial N acquisition in the fertilized soils. In conclusion, the study shows that N availability can control soil C cycling by affecting microbial CUE, while plant community-mediated changes in organic matter inputs and P and K availability played no important role for C partitioning of the microbial community in this temperate grassland. </p>", "keywords": ["FUNGAL", "2. Zero hunger", "106022 Mikrobiologie", "Nitrogen addition", "BACTERIAL", "NITROGEN DEPOSITION", "GROWTH EFFICIENCY", "FOREST FLOOR", "Nutrients", "04 agricultural and veterinary sciences", "15. Life on land", "Stoichiometry", "ORGANIC-MATTER", "RESPIRATION", "106026 \u00d6kosystemforschung", "13. Climate action", "Nutrient limitation", "Microbial growth yield", "106022 Microbiology", "0401 agriculture", " forestry", " and fisheries", "Mean residence time", "STOICHIOMETRIC CONTROLS", "ENZYME-ACTIVITY", "106026 Ecosystem research", "COMMUNITY STRUCTURE"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2016.03.008"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2016.03.008", "name": "item", "description": "10.1016/j.soilbio.2016.03.008", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2016.03.008"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-06-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2016.05.004", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:18:30Z", "type": "Journal Article", "created": "2016-05-17", "title": "Gasification Biochar Has Limited Effects On Functional And Structural Diversity Of Soil Microbial Communities In A Temperate Agroecosystem", "description": "Abstract   Biochar may enhance soil fertility and carbon (C) sequestration but there is still a lack of comprehensive understanding of its effects on soil microbial communities and functioning. This study tested the differential effects of two doses (6\u20138 and 0.8\u20131.4\u00a0t\u00a0ha \u22121  for High and Low doses, respectively) of wheat straw gasification biochar (GBC) and fresh straw incorporated as soil amendments into an agricultural field in Denmark. Soils were analysed three months after the amendments for pH, total organic matter, microbial biomass (ATP), ten enzymatic activities, catabolic potential by substrate-induced respiration (MicroResp\u2122), soil toxicity test (BioTox\u2122) and bacterial community structure (Illumina 16S rRNA gene sequencing). No significant effect of biochar treatment was observed regarding ATP content, catabolic community profiles and soil toxicity. The higher dose of GBC increased phenol oxidase activity and soil pH, and decreased the cellulase activity. No major effect of high dose GBC was observed on the soil community diversity, and only minor effect on the community composition, with an increase in the relative abundance of a single OTU associated with  Acidobacteria_Gp16 . Addition of low dose of GBC caused an increase in the relative abundance of the rare members in the microbial communities thus increasing the diversity of soil microorganisms. A comparable effect was observed with the addition of fresh straw. Overall, our results indicated that GBC as soil amendment had a limited effect on the functional and structural diversity of soil microbial communities in a Danish temperate agroecosystem.", "keywords": ["Carbon sequestration", "2. Zero hunger", "16S Illumina sequencing", "Microbial activity", "MicroResp", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Toxicity test", "16S Illumina sequencing; Acidobacteria; Carbon sequestration; Microbial activity; MicroResp; Toxicity test; Soil Science; Microbiology", "Acidobacteria"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2016.05.004"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2016.05.004", "name": "item", "description": "10.1016/j.soilbio.2016.05.004", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2016.05.004"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-08-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2016.05.007", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:18:30Z", "type": "Journal Article", "created": "2016-05-28", "title": "Feedback Responses Of Soil Greenhouse Gas Emissions To Climate Change Are Modulated By Soil Characteristics In Dryland Ecosystems", "description": "Understanding feedback responses of greenhouse gas (GHG) emissions to future climate projections is critical for the effective development of mitigation and adaptation strategies. It is proposed that effects of elevated carbon dioxide (CO2) and temperature can have differential effects on GHG fluxes but the magnitude and direction of such impact is not fully known, especially in dryland ecosystems, which are typically water and nutrient limited. We examined individual and interactive impacts of elevated CO2 (400\u00a0ppm vs. 600\u00a0ppm) and elevated temperature (ambient vs.\u00a0+3\u00a0\u00b0C increase) treatments on GHG fluxes, in three Australian dryland soils. Firstly, we quantified the individual and interactive effects of elevated CO2 and temperature on CO2, methane (CH4) and nitrous oxide (N2O) fluxes and the corresponding soil net global warming potential (GWP). Secondly, biotic and abiotic drivers of GHG emissions were identified by exploring the relationship between CO2, CH4 and N2O fluxes with the abundance of bacteria, methanotrophs and N2O-reducing bacteria as well as soil abiotic characteristics. Our results show that soil CO2 emissions and CH4 uptake respond mainly to elevated temperature in all dryland soils tested, with interactive treatment effects showing a less than additive trend on soil net GWP. Nitrous oxide emissions responded less to climate change treatments, and these were site-specific. Soil site characteristics were the main determinant of all GHG emissions; however, the abundance of total bacteria and N2O-reducing bacteria significantly explained CO2 and N2O fluxes, respectively. This study shows that dryland soils respond to climate change with an offset under interactive climate treatments. Our findings suggest that future studies on GHG feedback responses should explicitly consider both biotic and abiotic soil characteristics in order to provide a better mechanistic understanding for the development of future mitigation strategies.", "keywords": ["2. Zero hunger", "13. Climate action", "XXXXXX - Unknown", "greenhouse gases", "11. Sustainability", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "bacteria", "climatic changes", "12. Responsible consumption"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2016.05.007"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2016.05.007", "name": "item", "description": "10.1016/j.soilbio.2016.05.007", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2016.05.007"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-09-01T00:00:00Z"}}, {"id": "10.1016/j.foodres.2022.112202", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:35Z", "type": "Journal Article", "created": "2022-11-19", "title": "Evidence of virulence and antibiotic resistance genes from the microbiome mapping in minimally processed vegetables producing facilities", "description": "Daily consumption of fresh vegetables is highly recommended by international health organizations, because of their high content of nutrients. However, fresh vegetables might harbour several pathogenic microorganisms or contribute to spread antibiotic resistance, thus representing a hazard for consumers. In addition, little is known about the transmission routes of the residential microbiome from the food handling environment to vegetables. Therefore, we collected environmental and food samples from three manufactures producing fresh vegetables to estimate the relevance of the built environment microbiome on that of the finished products. Our results show that food contact surfaces sampled after routine cleaning and disinfection procedures host a highly diverse microbiome, including pathogens such as the enterotoxigenic Bacillus cereus sensu stricto. In addition, we provide evidence of the presence of a wide range of antibiotic resistance and virulence genes on food contact surfaces associated with multiple taxa, thus supporting the hypothesis that selection of resistant and pathogenic taxa might occur on sanitized surfaces. This study also highlights the potential of microbiome mapping routinely applied in food industries monitoring programs to ensure food safety.", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Food industry", "Virulence", "3309 Tecnolog\u00eda de Los Alimentos", "Antimicrobials", "Biolog\u00eda", "Tecnolog\u00eda de los alimentos", "Biofilm", "Microbiota", "Drug Resistance", " Microbial", "Anti-Bacterial Agents", "03 medical and health sciences", "Bacillus cereus", "Vegetables", "Antimicrobials; Bacillus cereus; Biofilm; Food industry; Metagenomics", "Metagenomics", "2414 Microbiolog\u00eda"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/903001/1/1-s2.0-S0963996922012601-main.pdf"}, {"href": "https://doi.org/10.1016/j.foodres.2022.112202"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Food%20Research%20International", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.foodres.2022.112202", "name": "item", "description": "10.1016/j.foodres.2022.112202", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.foodres.2022.112202"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-12-01T00:00:00Z"}}, {"id": "10.1016/j.foodres.2022.112162", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-06-26T16:17:35Z", "type": "Journal Article", "created": "2022-11-19", "title": "High pressure processing at the early stages of ripening enhances the safety and quality of dry fermented sausages elaborated with or without starter culture", "description": "To study the quality of chorizo de Le\u00f3n dry fermented sausages (DFS), high pressure processing (HPP) applied at the early stages of ripening and the use of a functional starter culture were evaluated as additional safety measures. Furthermore, the ability to control the populations of artificially inoculated Listeria monocytogenes and Salmonella Typhimurium was investigated and the evolution of microbial communities was assessed by amplicon 16S rRNA metataxonomics. The use of HPP and the starter culture, independently or combined, induced a reduction of Listeria monocytogenes of 1.5, 4.3 and\u00a0>\u00a04.8 log CFU/g respectively, as compared to control. Salmonella Typhimurium counts were under the detection limit (<1 log) in all treated end-product samples. Both additional measures reduced the activity of undesirable microbiota, such as Serratia and Brochothrix, during the production of DFS. Moreover, the starter culture highly influencedthe taxonomic profile of samples.No adverse sensory effects were observed, and panelists showed preference for HPP treated DFS. In conclusion, this new approach of applying HPP at the early stages of ripening of DFS in combination with the use of a defined starter culture improved the safety and quality of the meat product.", "keywords": ["Salmonella typhimurium", "2. Zero hunger", "Tecnolog\u00eda de los alimentos", "Ripening", "Microbial communities", "04 agricultural and veterinary sciences", "Preservation", "Meat Products", "High Hydrostatic Pressure", "0404 agricultural biotechnology", "RNA", " Ribosomal", " 16S", "Fermentation", "Lactic acid bacteria", "Fermented meat", "0405 other agricultural sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.foodres.2022.112162"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Food%20Research%20International", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.foodres.2022.112162", "name": "item", "description": "10.1016/j.foodres.2022.112162", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.foodres.2022.112162"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-01T00:00:00Z"}}, {"id": "10.1016/j.foreco.2022.120608", "type": "Feature", "geometry": null, "properties": {"updated": "2026-06-26T16:17:44Z", "type": "Journal Article", "created": "2022-11-01", "title": "Tree species traits and mycorrhizal association shape soil microbial communities via litter quality and species mediated soil properties", "description": "Open AccessLes sols abritent une grande diversit\u00e9 de microbiote du sol, qui jouent un r\u00f4le crucial dans les processus \u00e9cosyst\u00e9miques cl\u00e9s tels que la transformation de la liti\u00e8re et la min\u00e9ralisation, mais la fa\u00e7on dont les interactions complexes plante-sol fa\u00e7onnent la diversit\u00e9 et la composition du microbiote du sol reste insaisissable. Nous avons effectu\u00e9 le s\u00e9quen\u00e7age de l'amplicon de l'ADN isol\u00e9 \u00e0 partir de la couche arable min\u00e9rale de six arbres europ\u00e9ens communs plant\u00e9s dans des peuplements de monoculture de jardins communs multi-sites d'\u00e9rables \u00e0 feuilles larges et de fr\u00eanes associ\u00e9s \u00e0 des mycorhizes arbusculaires (MA), de h\u00eatres \u00e0 feuilles larges, de chaux et de ch\u00eanes associ\u00e9s \u00e0 des champignons ectomycorhiziens (MCE) et d'\u00e9pinettes de conif\u00e8res associ\u00e9es \u00e0 la MCE. L'objectif principal de cette \u00e9tude \u00e9tait d'\u00e9valuer les effets de l'identit\u00e9 des esp\u00e8ces d'arbres, des traits et des associations mycorhiziennes sur la diversit\u00e9, la structure de la communaut\u00e9, la coh\u00e9sion et le changement dans l'abondance relative des groupes taxonomiques et fonctionnels de bact\u00e9ries, de champignons et de n\u00e9matodes du sol. Nos r\u00e9sultats ont r\u00e9v\u00e9l\u00e9 que les sols sous les feuillus abritaient une plus grande richesse en bact\u00e9ries, champignons et n\u00e9matodes que sous l'\u00e9pinette de Norv\u00e8ge. Les esp\u00e8ces d'arbres \u00e0 feuilles larges associ\u00e9es aux champignons de la MA ont montr\u00e9 une plus grande coh\u00e9sion des communaut\u00e9s bact\u00e9riennes et fongiques que les arbres \u00e0 feuilles larges associ\u00e9s aux champignons de la mec, mais la coh\u00e9sion des communaut\u00e9s de n\u00e9matodes \u00e9tait plus \u00e9lev\u00e9e sous les arbres associ\u00e9s aux champignons de la mec que sous les arbres associ\u00e9s aux champignons de la MA. Les bact\u00e9ries copiotrophes, les saprotrophes fongiques et les n\u00e9matodes bact\u00e9rivores \u00e9taient associ\u00e9s au fr\u00eane, \u00e0 l'\u00e9rable et \u00e0 la chaux ayant un pH du sol \u00e9lev\u00e9 et des indices de d\u00e9composition de la liti\u00e8re \u00e9lev\u00e9s, tandis que les bact\u00e9ries oligotrophes, les champignons ectomycorhiziens et les n\u00e9matodes fongivores \u00e9taient associ\u00e9s au h\u00eatre, au ch\u00eane et \u00e0 l'\u00e9pinette de Norv\u00e8ge qui avaient un pH du sol faible et des indices de d\u00e9composition de la liti\u00e8re faibles. Les esp\u00e8ces d'arbres associ\u00e9es aux champignons AM pr\u00e9sentaient une forte proportion de bact\u00e9ries copiotrophes et de champignons saprotrophes, tandis que les arbres associ\u00e9s aux champignons ECM pr\u00e9sentaient une abondance relative \u00e9lev\u00e9e de bact\u00e9ries oligotrophes, de champignons ECM et de n\u00e9matodes fongivores. Les diff\u00e9rentes abondances de ces groupes fonctionnels soutiennent l'\u00e9conomie nutritive plus inorganique des esp\u00e8ces d'arbres AM par rapport \u00e0 l'\u00e9conomie nutritive plus organique des esp\u00e8ces d'arbres ECM. La communaut\u00e9 bact\u00e9rienne a \u00e9t\u00e9 indirectement affect\u00e9e par la qualit\u00e9 de la liti\u00e8re via les propri\u00e9t\u00e9s du sol, tandis que la communaut\u00e9 fongique a \u00e9t\u00e9 directement affect\u00e9e par la qualit\u00e9 de la liti\u00e8re et les esp\u00e8ces d'arbres. Les groupes fonctionnels des n\u00e9matodes refl\u00e9taient les communaut\u00e9s de bact\u00e9ries et de champignons, indiquant ainsi les groupes principaux et actifs des communaut\u00e9s microbiennes sp\u00e9cifiques aux esp\u00e8ces d'arbres. Notre \u00e9tude a sugg\u00e9r\u00e9 que l'identit\u00e9, les traits et l'association mycorhizienne des esp\u00e8ces d'arbres fa\u00e7onnent consid\u00e9rablement les communaut\u00e9s microbiennes via un effet direct de la chimie de la liti\u00e8re ainsi que via les propri\u00e9t\u00e9s du sol m\u00e9di\u00e9es par la liti\u00e8re.", "keywords": ["Fagus sylvatica", "Soil Science", "Plant Science", "Plant litter", "Agricultural and Biological Sciences", "Soil biology", "Mycorrhizal Fungi and Plant Interactions", "Soil water", "Genetics", "Saproxylic Insect Ecology and Forest Management", "Soil microbiota", "Symbiosis", "Plant Interactions", "Biology", "Ecosystem", "Amplicon sequencing", "Beech", "Ecology", "Bacteria", "Common garden experiment", "Botany", "Life Sciences", "04 agricultural and veterinary sciences", "15. Life on land", "Ectomycorrhiza", "Insect Science", "FOS: Biological sciences", "Functional groups", "Community cohesion", "0401 agriculture", " forestry", " and fisheries", "Trophic interactions", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Mycorrhiza"]}, "links": [{"href": "https://doi.org/10.1016/j.foreco.2022.120608"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Forest%20Ecology%20and%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.foreco.2022.120608", "name": "item", "description": "10.1016/j.foreco.2022.120608", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.foreco.2022.120608"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=bacteria&offset=50&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=bacteria&offset=50&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "prev", "title": "items (prev)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=bacteria&offset=0", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=bacteria&offset=100", "hreflang": "en-US"}], "numberMatched": 707, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-06-27T12:14:32.069174Z"}