{"type": "FeatureCollection", "features": [{"id": "10.1016/j.coisb.2021.100379", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:15:28Z", "type": "Journal Article", "created": "2021-09-09", "title": "Approaches for completing metabolic networks through metabolite damage and repair discovery", "description": "Metabolites are prone to damage, either via enzymatic side reactions, which collectively form the underground metabolism, or via spontaneous chemical reactions. The resulting non-canonical metabolites that can be toxic, are mended by dedicated 'metabolite repair enzymes.' Deficiencies in the latter can cause severe disease in humans, whereas inclusion of repair enzymes in metabolically engineered systems can improve the production yield of value-added chemicals. The metabolite damage and repair loops are typically not yet included in metabolic reconstructions and it is likely that many remain to be discovered. Here, we review strategies and associated challenges for unveiling non-canonical metabolites and metabolite repair enzymes, including systematic approaches based on high-resolution mass spectrometry, metabolome-wide side-activity prediction, as well as high-throughput substrate and phenotypic screens.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", ": Biochemistry", " biophysics & molecular biology [F05] [Life sciences]", ": Biochimie", " biophysique & biologie mol\u00e9culaire [F05] [Sciences du vivant]", "Article"]}, "links": [{"href": "https://doi.org/10.1016/j.coisb.2021.100379"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Current%20Opinion%20in%20Systems%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.coisb.2021.100379", "name": "item", "description": "10.1016/j.coisb.2021.100379", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.coisb.2021.100379"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-12-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2006.04.039", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:16:10Z", "type": "Journal Article", "created": "2006-05-23", "title": "Carbohydrate Dynamics In Particle-Size Fractions Of Sandy Spodosols Following Forest Conversion To Maize Cropping", "description": "Abstract   In southwest France, much of the forested land on sandy spodosols has been converted to continuous maize cropping in the last few decades. To evaluate the impacts of this change on soil organic matter properties, we compared total organic C and neutral and amino sugars content in whole soil and particle size separates of two forested, and five related sites that had been either clear-cut for 12 and 18 mo, or cultivated to maize for 4\u201322\u00a0yr. Soil carbohydrates accounted for 4\u20137% of the total organic C across all sites. Soil organic C contents of clear-cut and cultivated sites were only 57\u201379% of the average value measured in forested sites. Accordingly, carbohydrate content of clear-cut and cultivated sites were only 35\u201366% of the value in forested sites. Ordering the sites in a chronosequence indicated that both total organic C and carbohydrate contents decreased with an increase in time elapsed since clear-cutting and maize cultivation. The only exception was a partial recovery of carbohydrate content in the site that had been under continuous maize for 22\u00a0yr. The clay+silt fraction (0\u201350\u00a0\u03bcm) was enriched in carbohydrates, mainly of microbial origin, whereas the sand size fractions (50\u2013200 and 200\u20132000\u00a0\u03bcm) contained fewer carbohydrates which were mainly of plant origin. Monosaccharide analysis of particle size separates revealed significant differences in carbohydrate composition between sites. Relative to forested sites, the coarse and fine sand fractions in clear-cut and cultivated sites were depleted in carbohydrates and were relatively enriched in plant-derived carbohydrates. Carbohydrate content of the clay+silt fraction drastically decreased upon clear-cutting. Amino sugar content was consistently lower in clear-cut and cultivated sites than in forested sites, indicating that microbial populations were negatively affected by clear-cutting and cultivation. The fungal population appeared more sensitive than bacteria to these land-use changes as indicated by a greater decline in glucosamine than in muramic acid contents.", "keywords": ["PINE FOREST", "2. Zero hunger", "PODZOSOL", "550", "BIOCHIMIE", "CARBOHYDRATES", "PIN MARITIME", "04 agricultural and veterinary sciences", "[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study", "15. Life on land", "01 natural sciences", "PARTICLE SIZE SEPARATE", "SUCRES", "MAIZE CROPPING", "0401 agriculture", " forestry", " and fisheries", "[SDV.SA.SDS] Life Sciences [q-bio]/Agricultural sciences/Soil study", "FRACTIONNEMENT GRANULOMETRIQUE", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2006.04.039"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2006.04.039", "name": "item", "description": "10.1016/j.soilbio.2006.04.039", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2006.04.039"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-09-01T00:00:00Z"}}, {"id": "10.1111/j.1365-2486.2006.01146.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:17:40Z", "type": "Journal Article", "created": "2006-04-03", "title": "Soil Carbon Balance In A Clonal Eucalyptus Plantation In Congo: Effects Of Logging On Carbon Inputs And Soil Co2 Efflux", "description": "Abstract<p>Soil CO2 efflux was measured in clear\uffe2\uff80\uff90cut and intact plots in order to quantify the impact of harvest on soil respiration in an intensively managed Eucalyptus plantation, and to evaluate the increase in heterotrophic component of soil respiration because of the decomposition of harvest residues. Soil CO2 effluxes showed a pronounced seasonal trend, which was well related to the pattern of precipitation and soil water content and were always significantly lower in the clear\uffe2\uff80\uff90cut plots than in the intact plots. On an annual basis, soil respiration represented 1.57 and 0.91\uffe2\uff80\uff83kgC\uffe2\uff80\uff83m\uffe2\uff88\uff922\uffe2\uff80\uff83yr\uffe2\uff88\uff921 in intact and clear\uffe2\uff80\uff90cut plots, respectively. During the first year following harvest, residues have lost 0.79\uffe2\uff80\uff83kgC\uffe2\uff80\uff83m\uffe2\uff88\uff922\uffe2\uff80\uff83yr\uffe2\uff88\uff921. Our estimate of heterotrophic respiration was calculated assuming that it was similar to soil respiration in the clear\uffe2\uff80\uff90cut area except that the decomposition of residues did not occur, and it was further corrected for differences in soil water content between intact and clear\uffe2\uff80\uff90cut plots and for the cessation of leaf and fine root turnover in clear cut. Heterotrophic respiration in clear\uffe2\uff80\uff90cut plots was estimated at 1.18\uffe2\uff80\uff83kgC\uffe2\uff80\uff83m\uffe2\uff88\uff922\uffe2\uff80\uff83yr\uffe2\uff88\uff921 whereas it was only 0.65\uffe2\uff80\uff83kgC\uffe2\uff80\uff83m\uffe2\uff88\uff922\uffe2\uff80\uff83yr\uffe2\uff88\uff921 in intact plots (41% of soil respiration). Assumptions and uncertainties with these calculations are discussed.</p>", "keywords": ["DECOMPOSITION", "0106 biological sciences", "550", "[SDE.MCG]Environmental Sciences/Global Changes", "F60 - Physiologie et biochimie v\u00e9g\u00e9tale", "FOREST MANAGEMENT", "01 natural sciences", "EUCALYPTUS", "http://aims.fao.org/aos/agrovoc/c_1301", "http://aims.fao.org/aos/agrovoc/c_2159", "http://aims.fao.org/aos/agrovoc/c_3047", "CLEAR-CUT", "2. Zero hunger", "Eucalyptus", "liti\u00e8re foresti\u00e8re", "http://aims.fao.org/aos/agrovoc/c_2847", "abattage d'arbres", "04 agricultural and veterinary sciences", "15. Life on land", "CARBON BUDGET", "[SDE.MCG] Environmental Sciences/Global Changes", "LITTERFALL", "d\u00e9gradation", "0401 agriculture", " forestry", " and fisheries", "carbone", "SOIL RESPIRATION", "http://aims.fao.org/aos/agrovoc/c_8500", "http://aims.fao.org/aos/agrovoc/c_2683"]}, "links": [{"href": "https://doi.org/10.1111/j.1365-2486.2006.01146.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Global%20Change%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-2486.2006.01146.x", "name": "item", "description": "10.1111/j.1365-2486.2006.01146.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-2486.2006.01146.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-04-03T00:00:00Z"}}, {"id": "24e2d89a-a263-495d-bd27-8a05a35d53e9-bundesamt-fur-umwelt-bafu", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:22:49Z", "type": "Dataset", "title": "Geochemical soil atlas of Switzerland: Cadmium", "description": "Interpolated cadmium concentrations (mg/kg fine soil) in the topsoils (0-20 cm) of Switzerland. For the Ordinary Kriging Interpolations (1 km x 1 km), measurement data from a total of 1,201 sites of the Swiss Biodiversity Monitoring System, the National Soil Observation System and the European Soil Geochemical Atlas were taken into account. Element concentrations were analyzed in aqua regia outcrop (HNO3:HCl:H2O) from dried (40\u00b0C), sieved (< 2 mm) and subsequently ground soil samples using inductively coupled plasma mass spectrometry. Sites with known anthropogenic over-embossing of element concentrations (point sources) were excluded in advance. The results of the soil geochemical atlas are a snapshot of the element concentrations in the topsoils of Switzerland (sampling period 2011-2015). The interpolated maps serve to improve the visualization of regions with elevated or low concentrations. However, no parcel-sharp information or definitive conclusions on the geology, bioavailability, the percentage distribution of geogenous and anthropogenic sources as well as the load on the soil can be derived from this. Quotation of Publication: J. E. Reusser, M. B. Siegenthaler, L. H. E. Winkel, D. W\u00e4chter, R. Kretzschmar, R. G. Meuli: Geochemical soil atlas of Switzerland. Agroscope, Zurich, 2023.", "formats": [{"name": "HTML"}], "keywords": ["atlante", "atlas", "bgdi-bundesgeodaten-infrastruktur", "biochemie", "biochemistry", "biochimica", "biochimie", "boden", "bodenkartierung", "bodenqualitat", "bund", "carico-da-metalli-pesanti", "cartographie-des-sols", "ch", "charge-en-metaux-lourds", "confederation", "confederazione", "contenuto-in-nutrienti", "fsdi-federal-spatial-data-infrastructure", "heavy-metal-load", "ifdg-infrastruttura-federale-dei-dati-geografici", "ifdg-linfrastructure-federale-de-donnees-geographiques", "mappatura-del-suolo", "metal-toxique", "metalli-tossici", "nahrstoffgehalt", "nutrient-content", "qualita-del-suolo", "qualite-du-sol", "schwermetallbelastung", "soil", "soil-mapping", "soil-quality", "sol", "suolo", "teneur-en-nutriments", "toxic-metal", "toxische-metalle"], "contacts": [{"organization": "boden@bafu.admin.ch", "roles": ["creator"]}, {"organization": "https://opendata.swiss/organization/bundesamt-fur-umwelt-bafu", "roles": ["publisher"]}]}, "links": [{"href": "https://data.geo.admin.ch/browser/index.html#/collections/ch.bafu.geochemischer-bodenatlas_schweiz_cadmium/items/geochemischer-bodenatlas_schweiz_cadmium"}, {"href": "https://map.geo.admin.ch/?layers=ch.bafu.geochemischer-bodenatlas_schweiz_cadmium"}, {"href": "https://wms.geo.admin.ch/?SERVICE=WMS&VERSION=1.3.0&REQUEST=GetCapabilities&lang=de"}, {"href": "https://wmts.geo.admin.ch/EPSG/3857/1.0.0/WMTSCapabilities.xml?lang=de"}, {"href": "https://www.agroscope.admin.ch/agroscope/de/home/themen/umwelt-ressourcen/boden-gewaesser-naehrstoffe/nabo/ergaenzende-untersuchungen/geochemischer-bodenatlas.html"}, {"href": "http://data.europa.eu/88u/dataset/24e2d89a-a263-495d-bd27-8a05a35d53e9-bundesamt-fur-umwelt-bafu"}, {"rel": "self", "type": "application/geo+json", "title": "24e2d89a-a263-495d-bd27-8a05a35d53e9-bundesamt-fur-umwelt-bafu", "name": "item", "description": "24e2d89a-a263-495d-bd27-8a05a35d53e9-bundesamt-fur-umwelt-bafu", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/24e2d89a-a263-495d-bd27-8a05a35d53e9-bundesamt-fur-umwelt-bafu"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"null": "date"}}, {"id": "dc524564-eb7c-4cee-ae2c-974d8bd7eade-bundesamt-fur-umwelt-bafu", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-21T16:25:58Z", "type": "Dataset", "title": "Geochemical soil atlas of Switzerland: Chromium", "description": "Interpolated chromium concentrations (mg/kg fine earth) in the topsoils (0-20 cm) of Switzerland. For the Ordinary Kriging Interpolations (1 km x 1 km), measurement data from a total of 1,201 sites of the Swiss Biodiversity Monitoring System, the National Soil Observation System and the European Soil Geochemical Atlas were taken into account. Element concentrations were analyzed in aqua regia outcrop (HNO3:HCl:H2O) from dried (40\u00b0C), sieved (< 2 mm) and subsequently ground soil samples using inductively coupled plasma mass spectrometry. Sites with known anthropogenic over-embossing of element concentrations (point sources) were excluded in advance. The results of the soil geochemical atlas are a snapshot of the element concentrations in the topsoils of Switzerland (sampling period 2011-2015). The interpolated maps serve to improve the visualization of regions with elevated or low concentrations. However, no parcel-sharp information or definitive conclusions on the geology, bioavailability, the percentage distribution of geogenous and anthropogenic sources as well as the load on the soil can be derived from this. Quotation of Publication: J. E. Reusser, M. B. Siegenthaler, L. H. E. Winkel, D. W\u00e4chter, R. Kretzschmar, R. G. Meuli: Geochemical soil atlas of Switzerland. 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