{"type": "FeatureCollection", "features": [{"id": "10.1007/s11104-022-05508-z", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:15:22Z", "type": "Journal Article", "created": "2022-06-22", "title": "Harnessing belowground processes for sustainable intensification of agricultural systems", "description": "Abstract <p>Increasing food demand coupled with climate change pose a great challenge to agricultural systems. In this review we summarize recent advances in our knowledge of how plants, together with their associated microbiota, shape rhizosphere processes. We address (molecular) mechanisms operating at the plant\uffe2\uff80\uff93microbe-soil interface and aim to link this knowledge with actual and potential avenues for intensifying agricultural systems, while at the same time reducing irrigation water, fertilizer inputs and pesticide use. Combining in-depth knowledge about above and belowground plant traits will not only significantly advance our mechanistic understanding of involved processes but also allow for more informed decisions regarding agricultural practices and plant breeding. Including belowground plant-soil-microbe interactions in our breeding efforts will help to select crops resilient to abiotic and biotic environmental stresses and ultimately enable us to produce sufficient food in a more sustainable agriculture in the upcoming decades.</p", "keywords": ["0301 basic medicine", "BIOLOGICAL NITRIFICATION INHIBITION", "PHOSPHATE SOLUBILIZING BACTERIA", "Plant-plant interaction", "Rhizobiome", "MEDIATED PH CHANGES", "Review Article", "Plant health", "MEMBRANE H+-ATPASE", "12. Responsible consumption", "03 medical and health sciences", "Soil health", "Soil structure", "C sequestration", "SDG 13 - Climate Action", "SDG 2 \u2013 Kein Hunger", "106026 Ecosystem research", "Plant nutrition", "SDG 2 - Zero Hunger", "2. Zero hunger", "0303 health sciences", "Water availability", "Root exudation", "JASMONIC ACID", "15. Life on land", "Microbes", "Intercropping", "106026 \u00d6kosystemforschung", "PLANT-GROWTH", "13. Climate action", "ROOT BORDER CELLS", "SDG 13 \u2013 Ma\u00dfnahmen zum Klimaschutz", "C cycling", "INNATE IMMUNITY", "NITROGEN-FIXATION", "ORGANIC-ACIDS"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1007/s11104-022-05508-z.pdf"}, {"href": "https://doi.org/10.1007/s11104-022-05508-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-022-05508-z", "name": "item", "description": "10.1007/s11104-022-05508-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-022-05508-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-06-22T00:00:00Z"}}, {"id": "10.1016/j.biortech.2018.11.040", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:16:04Z", "type": "Journal Article", "created": "2018-11-10", "title": "Effect of feed glucose and acetic acid on continuous biohydrogen production by Thermotoga neapolitana", "description": "This study focused on the effect of feed glucose and acetic acid on biohydrogen production by Thermotoga neapolitana under continuous-flow conditions. Increasing the feed glucose concentration from 11.1 to 41.6\u202fmM decreased the hydrogen yield from 3.6 (\u00b10.1) to 1.4 (\u00b10.1)\u202fmol\u202fH2/mol glucose. The hydrogen production rate concomitantly increased until 27.8\u202fmM of feed glucose but remained unaffected when feed glucose was further raised to 41.6\u202fmM. Increasing the acetic acid concentration from 0 to 240\u202fmM hampered dark fermentation in batch bioassays, diminishing the cumulative hydrogen production by 45% and the hydrogen production rate by 57%, but induced no negative effect during continuous operation. Indeed, throughout the continuous flow operation the process performance improved considerably, as indicated by the 47% increase of hydrogen yield up to 3.1 (\u00b10.1)\u202fmol\u202fH2/mol glucose on day 110 at 27.8\u202fmM feed glucose.", "keywords": ["Thermotoga neapolitana", "Feed concentration", "Glucose", "Fermentation", "0211 other engineering and technologies", "0202 electrical engineering", " electronic engineering", " information engineering", "Acetic acid; Continuous-flow dark fermentation; Feed concentration; Hydrogen; Inhibition; Thermotoga neapolitana", "02 engineering and technology", "Acetic acid", "Continuous-flow dark fermentation", "Inhibition", "Acetic Acid", "Hydrogen"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/726873/1/Resubmission%20to%20BiTe%202018_11_08.pdf"}, {"href": "https://doi.org/10.1016/j.biortech.2018.11.040"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bioresource%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biortech.2018.11.040", "name": "item", "description": "10.1016/j.biortech.2018.11.040", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biortech.2018.11.040"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-02-01T00:00:00Z"}}, {"id": "10.1016/j.corsci.2018.03.019", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:16:12Z", "type": "Journal Article", "created": "2018-03-18", "title": "Calcium phosphate coatings for marble conservation: Influence of ethanol and isopropanol addition to the precipitation medium on the coating microstructure and performance", "description": "Abstract   The effect of adding ethanol and isopropanol to aqueous solutions of diammonium hydrogen phosphate, used to create a passivating layer of calcium phosphates over marble, was investigated. Thanks to its weakening effect on the hydration sphere of ions in solution, ethanol allowed complete coverage of marble surface by a crack-free and pore-free layer of octacalcium phosphate. Even better results were obtained using isopropanol, because it has lower adsorption affinity to calcite than ethanol. Treatments involving alcohols provided good acid protection and also restored cohesion among calcite grains in weathered marble.", "keywords": ["0211 other engineering and technologies", "Stonework Acid solutions SEM Atmospheric corrosion Acid inhibition Passive films", "02 engineering and technology", "ING-IND/22 Scienza e tecnologia dei materiali", "0210 nano-technology", "Acid solutions; Stonework; SEM; Acid inhibition; Atmospheric corrosion; Passive films", "3. Good health"]}, "links": [{"href": "https://cris.unibo.it/bitstream/11585/632511/9/CORSCI%20v2.pdf"}, {"href": "https://doi.org/10.1016/j.corsci.2018.03.019"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Corrosion%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.corsci.2018.03.019", "name": "item", "description": "10.1016/j.corsci.2018.03.019", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.corsci.2018.03.019"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-05-01T00:00:00Z"}}, {"id": "10.1016/j.ijhydene.2019.06.022", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:16:51Z", "type": "Journal Article", "created": "2019-06-26", "title": "H2-rich biogas recirculation prevents hydrogen supersaturation and enhances hydrogen production by Thermotoga neapolitana cf. capnolactica", "description": "Abstract   This study focused on the supersaturation of hydrogen in the liquid phase (H2aq) and its inhibitory effect on dark fermentation by Thermotoga neapolitana cf. capnolactica by increasing the agitation (from 100 to 500\u00a0rpm) and recirculating H2-rich biogas (GaR). At low cell concentrations, both 500\u00a0rpm and GaR reduced the H2aq from 30.1 (\u00b14.4) mL/L to the lowest values of 7.4 (\u00b10.7) mL/L and 7.2 (\u00b11.2) mL/L, respectively. However, at high cell concentrations (0.79\u00a0g CDW/L), the addition of GaR at 300\u00a0rpm was more efficient and increased the hydrogen production rate by 271%, compared to a 136% increase when raising the agitation to 500\u00a0rpm instead. While H2aq primarily affected the dark fermentation rate, GaR concomitantly increased the hydrogen yield up to 3.5\u00a0mol H2/mol glucose. Hence, H2aq supersaturation highly depends on the systems gas-liquid mass transfer and strongly inhibits dark fermentation.", "keywords": ["Thermotoga neapolitana", "End product inhibition", "Dark fermentation; End product inhibition; Gas recirculation; Hydrogen supersaturation; Sparging; Thermotoga neapolitana", "Hydrogen supersaturation", "Sparging", "7. Clean energy", "01 natural sciences", "Gas recirculation", "Dark fermentation", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/756486/1/Post-print%20for%20IRIS.pdf"}, {"href": "https://doi.org/10.1016/j.ijhydene.2019.06.022"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/International%20Journal%20of%20Hydrogen%20Energy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.ijhydene.2019.06.022", "name": "item", "description": "10.1016/j.ijhydene.2019.06.022", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.ijhydene.2019.06.022"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-07-01T00:00:00Z"}}, {"id": "10.1016/j.jenvman.2018.10.002", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:16:57Z", "type": "Journal Article", "created": "2018-10-05", "title": "Semi-continuous mono-digestion of OFMSW and Co-digestion of OFMSW with beech sawdust: Assessment of the maximum operational total solid content", "description": "In this study, mono-digestion of the organic fraction of municipal solid waste (OFMSW) and co-digestion of OFMSW with beech sawdust, simulating green waste, were used to investigate the maximum operational total solid (TS) content in semi-continuous high-solids anaerobic digestion (HS-AD). To alleviate substrate overloading in HS-AD, the effluent mass was relatively reduced compared to the influent mass, extending the mass retention time. To this aim, the reactor mass was daily evaluated, permitting to assess the reactor content removal by biogas production. During mono-digestion of OFMSW, the NH3 inhibition and the rapid TS removal prevented to maintain HS-AD conditions (i.e. TS\u202f\u2265\u202f10%), without exacerbating the risk of reactor acidification. In contrast, the inclusion of sawdust in OFMSW permitted to operate HS-AD up to 30% TS, before acidification occurred. Therefore, including a lignocellulosic substrate in OFMSW can prevent acidification and stabilize HS-AD at very high TS contents (i.e. 20-30%).", "keywords": ["[SDE] Environmental Sciences", "[SDV]Life Sciences [q-bio]", "substrate overloading", "Substrate overloading", "High-solids anaerobic digestion", "02 engineering and technology", "Solid Waste", "Influent/effluent uncoupling", "01 natural sciences", "7. Clean energy", "influent/effluent uncoupling", "12. Responsible consumption", "Acidification", "high-solids anaerobic digestion", "acidification", "Bioreactors", "11. Sustainability", "Fagus", "0202 electrical engineering", " electronic engineering", " information engineering", "Anaerobiosis", "ammonia inhibition", "Acidification; Ammonia inhibition; High-solids anaerobic digestion; Influent/effluent uncoupling; Substrate overloading", "0105 earth and related environmental sciences", "Ammonia inhibition", "660", "6. Clean water", "Refuse Disposal", "[SDV] Life Sciences [q-bio]", "13. Climate action", "[SDE]Environmental Sciences", "Methane"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/726869/1/Resubmission%202018_09_07.pdf"}, {"href": "https://hal.inrae.fr/hal-02623440/file/Vicente_Pastor_OFMSW_JEMA-D-18-02234R1.pdf"}, {"href": "https://doi.org/10.1016/j.jenvman.2018.10.002"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environmental%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jenvman.2018.10.002", "name": "item", "description": "10.1016/j.jenvman.2018.10.002", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jenvman.2018.10.002"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-02-01T00:00:00Z"}}, {"id": "10.1016/j.jenvman.2019.03.014", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:16:57Z", "type": "Journal Article", "created": "2019-03-11", "title": "Modelling non-ideal bio-physical-chemical effects on high-solids anaerobic digestion of the organic fraction of municipal solid waste", "description": "This study evaluates the main effects of including 'non-ideal' bio-physical-chemical corrections in high-solids anaerobic digestion (HS-AD) of the organic fraction of municipal solid waste (OFMSW), at total solid (TS) between 10 and 40%. As a novel approach, a simple 'non-ideal' module, accounting for the effects of ionic strength (I) on the main acid-base equilibriums, was coupled to a HS-AD model, to jointly evaluate the effects of 'non-ideality' and the TS content dynamics on the HS-AD bio-physical-chemistry. 'Non-ideality' influenced the pH, concentration of inhibitors (i.e. NH3), and liquid-gas transfer (i.e. CO2), particularly at higher TS (i.e. \u2265 20%). Meanwhile, fitting the experimental data for batch assays at 15% TS showed that HS-AD of OFMSW might be operated at I\u202f\u2265\u202f0.5\u202fM. Therefore, all HS-AD simulations should account for 'non-ideal' corrections, when assessing the main inhibitory mechanisms (i.e. NH3 buildup and acidification) potentially occurring in HS-AD of OFMSW.", "keywords": ["[SDE] Environmental Sciences", "[SDV]Life Sciences [q-bio]", "high-solids anaerobic digestion model", "Solid Waste", "01 natural sciences", "7. Clean energy", "total solids dynamics", "Refuse Disposal", "12. Responsible consumption", "[SDV] Life Sciences [q-bio]", "Bioreactors", "[SDE]Environmental Sciences", "11. Sustainability", "High-solids anaerobic digestion modelNon-ideal bio-physical-chemical correctionsIonic strengthTotal solids dynamicsAmmonia inhibition", "Anaerobiosis", "ionic strength", "Methane", "ammonia inhibition", "non-ideal bio-physical-chemical corrections", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/746250/1/post-print.pdf"}, {"href": "https://hal.inrae.fr/hal-02623438/file/S0301479719303044.pdf"}, {"href": "https://doi.org/10.1016/j.jenvman.2019.03.014"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environmental%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jenvman.2019.03.014", "name": "item", "description": "10.1016/j.jenvman.2019.03.014", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jenvman.2019.03.014"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-05-01T00:00:00Z"}}, {"id": "10.1016/j.renene.2019.02.126", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-27T16:17:07Z", "type": "Journal Article", "created": "2019-02-25", "title": "Influence of liquid-phase hydrogen on dark fermentation by Thermotoga neapolitana", "description": "Abstract   Hydrogen is a strong inhibitor of dark fermentation. We aimed at directly correlating the hydrogen production by Thermotoga neapolitana with the supersaturation of hydrogen in the liquid phase (H2aq), which is often disregarded. Different agitation speeds, biogas recirculation and bubble induction by AnoxK\u2122 K1 carrier were tested to prevent the supersaturation of H2aq. At 100\u202frpm agitation, the H2aq was 29.7 (\u00b11.4) mL/L, which is 3-times higher than 9.7\u202fmL/L, i.e. the equilibrium concentration given by Henry's law. Increasing the agitation speed up to 600\u202frpm reduced the H2aq until 8.5 (\u00b10.1) mL/L in 2\u202fh and increased the hydrogen production rate (HPR) from 39 (\u00b12) mL/L/h at 0\u202frpm to 198 (\u00b14) mL/L/h at 600\u202frpm. Similar to 600\u202frpm, biogas recirculation and the presence of K1 carrier at 200\u202frpm maintained the H2aq below the equilibrium concentration. This study demonstrates the reciprocal influence of HPR and H2aq and revealed an inverse nonlinear correlation between the two parameters. Therefore, we conclude that an adequate gas-liquid mass transfer, efficiently provided by biogas recirculation or the presence of solid materials (e.g. a biomass carrier), is essential to remove H2 from the liquid phase and prevent H2 supersaturation.", "keywords": ["Thermotoga neapolitana", "gas recirculation", "dark fermentation", "13. Climate action", "supersaturation", "hydrogen inhibition", "hyperthermophilic", "02 engineering and technology", "Thermotoga neapolitana", " hyperthermophilic", " dark fermentation", " gas recirculation", " hydrogen inhibition", " supersaturation", "0204 chemical engineering", "7. Clean energy", "01 natural sciences", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/743161/1/Resubmission%20manuscript.pdf"}, {"href": "https://doi.org/10.1016/j.renene.2019.02.126"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Renewable%20Energy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.renene.2019.02.126", "name": "item", "description": "10.1016/j.renene.2019.02.126", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.renene.2019.02.126"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-09-01T00:00:00Z"}}, {"id": "10.1016/j.watres.2019.114932", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:17:50Z", "type": "Journal Article", "created": "2019-07-30", "title": "Assessing practical identifiability during calibration and cross-validation of a structured model for high-solids anaerobic digestion", "description": "High-solids anaerobic digestion (HS-AD) of the organic fraction of municipal solid waste (OFMSW) is operated at a total solid (TS) content\u202f\u2265\u202f10% to enhance the waste treatment economy, though it might be associated to free ammonia (NH3) inhibition. This study aimed to calibrate and cross-validate a HS-AD model for homogenized reactors in order to assess the effects of high NH3 levels in HS-AD of OFMSW, but also to evaluate the suitability of the reversible non-competitive inhibition function to reproduce the effect of NH3 on the main acetogenic and methanogenic populations. The practical identifiability of structural/biochemical parameters (i.e. 35) and initial conditions (i.e. 32) was evaluated using batch experiments at different TS and/or inoculum-to-substrate ratios. Variance-based global sensitivity analysis and approximate Bayesian computation were used for parameter optimization. The experimental data in this study permitted to estimate up to 8 biochemical parameters, whereas the rest of parameters and biomass contents were poorly identifiable. The study also showed the relatively high levels of NH3 (i.e. up to 2.3\u202fg\u202fN/L) and ionic strength (i.e. up to 0.9\u202fM) when increasing TS in HS-AD of OFMSW. However, the NH3 non-competitive function was unable to capture the acetogenic/methanogenic inhibition. Therefore, the calibration emphasized the need for target-oriented experimental data to enhance the practical identifiability and the predictive capabilities of structured HS-AD models, but also the need for further testing the NH3 inhibition function used in these simulations.", "keywords": ["[SDE] Environmental Sciences", "[SDV]Life Sciences [q-bio]", "0207 environmental engineering", "high-solids anaerobic digestion model", "Bayes Theorem", "02 engineering and technology", "Solid Waste", "01 natural sciences", "7. Clean energy", "6. Clean water", "Refuse Disposal", "12. Responsible consumption", "[SDV] Life Sciences [q-bio]", "High-solids anaerobic digestion model", " ammonia inhibition", " ionic strength", " global sensitivity analysis", " approximate bayesian computation", "Bioreactors", "global sensitivity analysis", "[SDE]Environmental Sciences", "Calibration", "High-solids anaerobic digestion model", "Anaerobiosis", "ionic strength", "Methane", "ammonia inhibition", "approximate bayesian computation", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/757589/1/Post-print%20for%20IRIS.pdf"}, {"href": "https://hal.inrae.fr/hal-02623443/file/S0043135419307067.pdf"}, {"href": "https://doi.org/10.1016/j.watres.2019.114932"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Water%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.watres.2019.114932", "name": "item", "description": "10.1016/j.watres.2019.114932", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.watres.2019.114932"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-11-01T00:00:00Z"}}, {"id": "10.1111/1462-2920.70063", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:19:19Z", "type": "Journal Article", "created": "2025-03-12", "title": "Distinct Patterns of Antibiotic Sensitivities in Ammonia\u2010Oxidising Archaea", "description": "ABSTRACT<p>Ammonia\uffe2\uff80\uff90oxidising archaea (AOA) are important microorganisms contributing towards the nitrogen flux in the environment. Unlike archaea from other major phyla, genetic tools are yet to be developed for the AOA, and identification of antibiotic resistance markers for selecting mutants is required for a genetic system. The aim of this study was to test the effects of selected antibiotics (hygromycin B, neomycin, apramycin, puromycin, novobiocin) on pure cultures of three well studied AOA strains, \uffe2\uff80\uff98Candidatus Nitrosocosmicus franklandianus C13\uffe2\uff80\uff99, Nitrososphaera viennensis EN76 and Nitrosopumilus maritimus SCM1. Puromycin, hygromycin B and neomycin inhibited some but not all tested archaeal strains. All strains were resistant to apramycin and inhibited by novobiocin to various degrees. As N. viennensis EN76 was relatively more resistant to the tested antibiotics, a wider range of concentrations and compounds (chloramphenicol, trimethoprim, statins) was tested against this strain. N. viennensis EN76 was inhibited by trimethoprim, but not by chloramphenicol, and growth recovered within days in the presence of simvastatin, suggesting either degradation of, or spontaneous resistance against, this compound. This study highlights the physiological differences between different genera of AOA and has identified new candidate antibiotics for selective enrichment and the development of selectable markers for genetic systems in AOA.</p", "keywords": ["Archaea/genetics", "106022 Mikrobiologie", "Ammonia/metabolism", "Microbial Sensitivity Tests", "Archaea", "inhibition", "antibiotics", "Anti-Bacterial Agents/pharmacology", "Anti-Bacterial Agents", "Ammonia", "ammonia-oxidising archaea", "106022 Microbiology", "selective enrichment", "Oxidation-Reduction", "genetic system", "Research Article"], "contacts": [{"organization": "Timothy Klein, Logan H. Hodgskiss, Max Dreer, J. Colin Murrell, Matthew I. Hutchings, Christa Schleper, Laura E. Lehtovirta\u2010Morley,", "roles": ["creator"]}]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/98861/1/Klein_etal_2025_EnvironmentalMicrobiology.pdf"}, {"href": "https://doi.org/10.1111/1462-2920.70063"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1462-2920.70063", "name": "item", "description": "10.1111/1462-2920.70063", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1462-2920.70063"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-03-01T00:00:00Z"}}, {"id": "10.1111/j.1365-3040.2011.02465.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:19:39Z", "type": "Journal Article", "created": "2011-11-17", "title": "Light Inhibition Of Leaf Respiration In Field-Grown Eucalyptus Saligna In Whole-Tree Chambers Under Elevated Atmospheric Co2 And Summer Drought", "description": "SUMMARY<p>We investigated whether the degree of light inhibition of leaf respiration (R) differs among large Eucalyptus saligna grown in whole\uffe2\uff80\uff90tree chambers and exposed to present and future atmospheric [CO2] and summer drought. Associated with month\uffe2\uff80\uff90to\uffe2\uff80\uff90month changes in temperature were concomitant changes in R in the light (Rlight) and darkness (Rdark), with both processes being more temperature dependent in well\uffe2\uff80\uff90watered trees than under drought. Overall rates of Rlight and Rdark were not significantly affected by [CO2]. By contrast, overall rates of Rdark (averaged across both [CO2]) were ca. 25% lower under drought than in well\uffe2\uff80\uff90watered trees. During summer, the degree of light inhibition of leaf R was greater in droughted (ca. 80% inhibition) than well\uffe2\uff80\uff90watered trees (ca. 50% inhibition). Notwithstanding these treatment differences, an overall positive relationship was observed between Rlight and Rdark when data from all months/treatments were combined (R2\uffe2\uff80\uff83=\uffe2\uff80\uff830.8). Variations in Rlight were also positively correlated with rates of Rubisco activity and nitrogen concentration. Light inhibition resulted in a marked decrease in the proportion of light\uffe2\uff80\uff90saturated photosynthesis respired (i.e. reduced R/Asat). Collectively, these results highlight the need to account for light inhibition when assessing impacts of global change drivers on the carbon economy of tree canopies.</p>", "keywords": ["0301 basic medicine", "0106 biological sciences", "Light", "01 natural sciences", "nitrogen", "ribulosebisphosphate carboxylase", "Trees", "Keywords: carbon", "leaf respiration", "Photosynthesis", "Eucalyptus", "concentration (composition)", "droughts", "drought stress", "Photorespiration", "Temperature", "Rlight", "Darkness", "Photochemical Processes", "6. Clean water", "inhibition", "Droughts", "assessment method", "Elevated CO2", "Seasons", "photorespiration", "Nitrogen", "light effect", "Ribulose-Bisphosphate Carboxylase", "water", "Cell Respiration", "evergreen tree", "03 medical and health sciences", "Stress", " Physiological", "XXXXXX - Unknown", "temp Carbon balance", "global change", "580", "photosynthesis", "Drought", "Australia", "carbon dioxide", "temperature", "Water", "Plant Transpiration", "15. Life on land", "Carbon Dioxide", "Carbon", "Plant Leaves", "13. Climate action", "Plant Stomata", "Leaf respiration", "respiration"]}, "links": [{"href": "https://openresearch-repository.anu.edu.au/bitstream/1885/51083/5/Light_inhibition_of_leaf_respiration_in_field-grown.pdf.jpg"}, {"href": "https://openresearch-repository.anu.edu.au/bitstream/1885/51083/7/01_Crous_Light_inhibition_of_leaf_2012.pdf.jpg"}, {"href": "https://doi.org/10.1111/j.1365-3040.2011.02465.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%2C%20Cell%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-3040.2011.02465.x", "name": "item", "description": "10.1111/j.1365-3040.2011.02465.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-3040.2011.02465.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-12-14T00:00:00Z"}}, {"id": "PMC11897584", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:30:22Z", "type": "Journal Article", "created": "2025-03-12", "title": "Distinct Patterns of Antibiotic Sensitivities in Ammonia\u2010Oxidising Archaea", "description": "ABSTRACT                   <p>                     Ammonia\uffe2\uff80\uff90oxidising archaea (AOA) are important microorganisms contributing towards the nitrogen flux in the environment. Unlike archaea from other major phyla, genetic tools are yet to be developed for the AOA, and identification of antibiotic resistance markers for selecting mutants is required for a genetic system. The aim of this study was to test the effects of selected antibiotics (hygromycin B, neomycin, apramycin, puromycin, novobiocin) on pure cultures of three well studied AOA strains, \uffe2\uff80\uff98                     Candidatus                     Nitrosocosmicus franklandianus C13\uffe2\uff80\uff99,                     Nitrososphaera viennensis                     EN76 and                     Nitrosopumilus maritimus                     SCM1. Puromycin, hygromycin B and neomycin inhibited some but not all tested archaeal strains. All strains were resistant to apramycin and inhibited by novobiocin to various degrees. As                     N. viennensis                     EN76 was relatively more resistant to the tested antibiotics, a wider range of concentrations and compounds (chloramphenicol, trimethoprim, statins) was tested against this strain.                     N. viennensis                     EN76 was inhibited by trimethoprim, but not by chloramphenicol, and growth recovered within days in the presence of simvastatin, suggesting either degradation of, or spontaneous resistance against, this compound. This study highlights the physiological differences between different genera of AOA and has identified new candidate antibiotics for selective enrichment and the development of selectable markers for genetic systems in AOA.                   </p", "keywords": ["Archaea/genetics", "106022 Mikrobiologie", "Ammonia/metabolism", "Microbial Sensitivity Tests", "Archaea", "inhibition", "antibiotics", "Anti-Bacterial Agents/pharmacology", "Anti-Bacterial Agents", "Ammonia", "ammonia-oxidising archaea", "106022 Microbiology", "selective enrichment", "Oxidation-Reduction", "genetic system", "Research Article"], "contacts": [{"organization": "Timothy Klein, Logan H. Hodgskiss, Max Dreer, J. Colin Murrell, Matthew I. Hutchings, Christa Schleper, Laura E. Lehtovirta\u2010Morley,", "roles": ["creator"]}]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/98861/1/Klein_etal_2025_EnvironmentalMicrobiology.pdf"}, {"href": "https://doi.org/PMC11897584"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC11897584", "name": "item", "description": "PMC11897584", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC11897584"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-03-01T00:00:00Z"}}, {"id": "PMC9579094", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-27T16:30:33Z", "type": "Journal Article", "created": "2022-06-22", "title": "Harnessing belowground processes for sustainable intensification of agricultural systems", "description": "Abstract <p>Increasing food demand coupled with climate change pose a great challenge to agricultural systems. In this review we summarize recent advances in our knowledge of how plants, together with their associated microbiota, shape rhizosphere processes. We address (molecular) mechanisms operating at the plant\uffe2\uff80\uff93microbe-soil interface and aim to link this knowledge with actual and potential avenues for intensifying agricultural systems, while at the same time reducing irrigation water, fertilizer inputs and pesticide use. Combining in-depth knowledge about above and belowground plant traits will not only significantly advance our mechanistic understanding of involved processes but also allow for more informed decisions regarding agricultural practices and plant breeding. Including belowground plant-soil-microbe interactions in our breeding efforts will help to select crops resilient to abiotic and biotic environmental stresses and ultimately enable us to produce sufficient food in a more sustainable agriculture in the upcoming decades.</p", "keywords": ["0301 basic medicine", "BIOLOGICAL NITRIFICATION INHIBITION", "PHOSPHATE SOLUBILIZING BACTERIA", "Plant-plant interaction", "Rhizobiome", "MEDIATED PH CHANGES", "Review Article", "Plant health", "MEMBRANE H+-ATPASE", "12. Responsible consumption", "03 medical and health sciences", "Soil health", "Soil structure", "C sequestration", "SDG 13 - Climate Action", "SDG 2 \u2013 Kein Hunger", "106026 Ecosystem research", "Plant nutrition", "SDG 2 - Zero Hunger", "2. Zero hunger", "0303 health sciences", "Water availability", "Root exudation", "JASMONIC ACID", "15. Life on land", "Microbes", "Intercropping", "106026 \u00d6kosystemforschung", "PLANT-GROWTH", "13. Climate action", "ROOT BORDER CELLS", "SDG 13 \u2013 Ma\u00dfnahmen zum Klimaschutz", "C cycling", "INNATE IMMUNITY", "NITROGEN-FIXATION", "ORGANIC-ACIDS"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1007/s11104-022-05508-z.pdf"}, {"href": "https://doi.org/PMC9579094"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC9579094", "name": "item", "description": "PMC9579094", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC9579094"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-06-22T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=inhibition&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=inhibition&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=inhibition&", "hreflang": "en-US"}, {"rel": "last", "type": "application/geo+json", "title": "items (last)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=inhibition&offset=12", "hreflang": "en-US"}], "numberMatched": 12, "numberReturned": 12, "distributedFeatures": [], "timeStamp": "2026-07-28T08:52:05.110584Z"}