{"type": "FeatureCollection", "features": [{"id": "10.3389/fmicb.2022.859063", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-20T16:18:58Z", "type": "Journal Article", "created": "2022-05-17", "title": "Interacting Bioenergetic and Stoichiometric Controls on Microbial Growth", "description": "<p>Microorganisms function as open systems that exchange matter and energy with their surrounding environment. Even though mass (carbon and nutrients) and energy exchanges are tightly linked, there is a lack of integrated approaches that combine these fluxes and explore how they jointly impact microbial growth. Such links are essential to predicting how the growth rate of microorganisms varies, especially when the stoichiometry of carbon- (C) and nitrogen (N)-uptake is not balanced. Here, we present a theoretical framework to quantify the microbial growth rate for conditions of C-, N-, and energy-(co-) limitations. We use this framework to show how the C:N ratio and the degree of reduction of the organic matter (OM), which is also the electron donor, availability of electron acceptors (EAs), and the different sources of N together control the microbial growth rate under C, nutrient, and energy-limited conditions. We show that the growth rate peaks at intermediate values of the degree of reduction of OM under oxic and C-limited conditions, but not under N-limited conditions. Under oxic conditions and with N-poor OM, the growth rate is higher when the inorganic N (NInorg)-source is ammonium compared to nitrate due to the additional energetic cost involved in nitrate reduction. Under anoxic conditions, when nitrate is both EA and NInorg-source, the growth rates of denitrifiers and microbes performing the dissimilatory nitrate reduction to ammonia (DNRA) are determined by both OM degree of reduction and nitrate-availability. Consistent with the data, DNRA is predicted to foster growth under extreme nitrate-limitation and with a reduced OM, whereas denitrifiers are favored as nitrate becomes more available and in the presence of oxidized OM. Furthermore, the growth rate is reduced when catabolism is coupled to low energy yielding EAs (e.g., sulfate) because of the low carbon use efficiency (CUE). However, the low CUE also decreases the nutrient demand for growth, thereby reducing N-limitation. We conclude that bioenergetics provides a useful conceptual framework for explaining growth rates under different metabolisms and multiple resource-limitations.</p", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "denitrification", "660", "nitrogen limitation", "microbial growth", "Biological Sciences", "bioenergetics", "Microbiology", "QR1-502", "6. Clean water", "stoichiometry", "DNRA", "thermodynamics", "03 medical and health sciences", "Geovetenskap och relaterad milj\u00f6vetenskap", "Microbiology (Microbiology in the medical area to be 30109)", "13. Climate action", "Biologiska vetenskaper", "Bioenergy", "Earth and Related Environmental Sciences", "energy limitation"]}, "links": [{"href": "https://pub.epsilon.slu.se/28342/1/chakrawal-a-et-al-220615.pdf"}, {"href": "https://doi.org/10.3389/fmicb.2022.859063"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2022.859063", "name": "item", "description": "10.3389/fmicb.2022.859063", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2022.859063"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-05-17T00:00:00Z"}}, {"id": "10.17221/6339-pse", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-09-20T16:18:19Z", "type": "Journal Article", "created": "2018-02-10", "title": "Nitrogen And Phosphorus Resorption Of Artemisia Scoparia, Chenopodium Acuminatum, Cannabis Sativa, And Phragmites Communis Under Nitrogen And Phosphorus Additions In A Semiarid Grassland, China", "description": "A factorial nitrogen (N) \u00d7 phosphorus (P) addition experiment was conducted to evaluate responses of leaf nutrient resorption to increased soil N and P availability in a semiarid grassland in Keerqin Sandy Lands, China. Four plant species were selected, among which Artemisia scoparia and Chenopodium acuminatum were dominant species in the control and P-added plots, and Cannabis sativa and Phragmites communis were dominant in the N- and N + P-treated plots. Results showed that N and P resorption varied substantially among species (P &lt; 0.01). A general trend of decrease in N resorption efficiency (NRE) and N resorption proficiency (NRP) was observed in response to increased soil N availability for all species, except P. communis only for NRE. Similarly, P resorption proficiency (PRP) decreased in response to P addition for all species, whereas P resorption efficiency (PRE) was not affected by P addition. Species responded differently in terms of PRE and PRP to N addition, whereas no changes in NRE and NRP occurred in response to P addition except P. communis for NRE. Our results suggest that increased soil nutrient availability can influence plant-mediated nutrient cycling directly by changing leaf nutrient resorption and indirectly by altering species composition in the sandy grassland.", "keywords": ["2. Zero hunger", "0106 biological sciences", "species composition", "nitrogen limitation", "Plant culture", "0401 agriculture", " forestry", " and fisheries", "litter decomposition", "nutrient availability", "04 agricultural and veterinary sciences", "15. Life on land", "sandy grassland", "01 natural sciences", "SB1-1110"], "contacts": [{"organization": "R. Mao, Z. Y. Yu, D. H. Zeng, Lu-Jun Li,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.17221/6339-pse"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%2C%20Soil%20and%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.17221/6339-pse", "name": "item", "description": "10.17221/6339-pse", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.17221/6339-pse"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-10-31T00:00:00Z"}}, {"id": "10.2307/1940261", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-20T16:18:46Z", "type": "Journal Article", "created": "2006-05-09", "title": "Effects Of Different Resource Additions On Species-Diversity In An Annual Plant Community", "description": "<p>A commonly observed phenomenon in plant communities is that the addition of a limiting resource leads to an increase in productivity and a decrease in species diversity. We tested the hypothesis that the mechanism underlying this pattern is a disproportionate increase in mortality of smaller or shade\uffe2\uff80\uff94intolerant species in more productive sites caused by reduction of light levels. We added water and/or one of three nutrients (nitrogen, phosphorus, and potassium) to a 1st\uffe2\uff80\uff94old\uffe2\uff80\uff94field community dominated by weedy annuals and measured effect on productivity, species composition, diversity, and light levels after one growing season. Diversity was not clearly related to productivity in this experiment. Watering increased productivity, but, contrary to expectations, had no effect on density of surviving plants, species diversity, or abundance of low\uffe2\uff80\uff94growing species. Almost all the increase in biomass with watering was due to a positive response by Ambrosia artemisiifolia, an upright annual that was the most common species in the canopy in all treatments. The addition of nitrogen had only a small positive effect on productivity, but strongly decreased density of surviving plants, species diversity, and abundance of most low\uffe2\uff80\uff94growing species. Only Ambrosia increased in abundance with nitrogen addition. The phophorus and potassium additions had little effect on the community. We suggest that the high mortality and low diversity in the nitrogen addition plots, but not in the more productive watered plots, was due to limitation by nitrogen earlier than limitation by water during the growing season. The consequence was earlier canopy closure and greater mortality due to light limitation.</p>", "keywords": ["2. Zero hunger", "0106 biological sciences", "annual plants", "Lepidium campestre", "productivity", "species diversity", "Panicum capillare", "Science", "Ecology and Evolutionary Biology", "nitrogen limitation", "water limitation", "resource additions", "15. Life on land", "01 natural sciences", "Chenopodium album", "Ambrosia artemisiifolia"], "contacts": [{"organization": "Thomas E. Miller, Thomas E. Miller, Deborah E. Goldberg,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.2307/1940261"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2307/1940261", "name": "item", "description": "10.2307/1940261", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2307/1940261"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1990-02-01T00:00:00Z"}}, {"id": "10.3389/ffgc.2021.686945", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-20T16:18:56Z", "type": "Journal Article", "created": "2021-06-11", "title": "Modeling Microbial Adaptations to Nutrient Limitation During Litter Decomposition", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Microbial decomposers face large stoichiometric imbalances when feeding on nutrient-poor plant residues. To meet the challenges of nutrient limitation, microorganisms might: (i) allocate less carbon (C) to growth vs. respiration or excretion (i.e., flexible C-use efficiency, CUE), (ii) produce extracellular enzymes to target compounds that supply the most limiting element, (iii) modify their cellular composition according to the external nutrient availability, and (iv) preferentially retain nutrients at senescence. These four resource use modes can have different consequences on the litter C and nitrogen (N) dynamics\u2013modes that selectively remove C from the system can reduce C storage in soil, whereas modes that delay C mineralization and increase internal N recycling could promote storage of C and N. Since we do not know which modes are dominant in litter decomposers, we cannot predict the fate of C and N released from plant residues, in particular under conditions of microbial nutrient limitation. To address this question, we developed a process-based model of litter decomposition in which these four resource use modes were implemented. We then parameterized the model using \u223c80 litter decomposition datasets spanning a broad range of litter qualities. The calibrated model variants were able to capture most of the variability in litter C, N, and lignin fractions during decomposition regardless of which modes were included. This suggests that different modes can lead to similar litter decomposition trajectories (thanks to the multiple alternative resource acquisition pathways), and that identification of dominant modes is not possible using \u201cstandard\u201d litter decomposition data (an equifinality problem). Our results thus point to the need of exploring microbial adaptations to nutrient limitation with empirical estimates of microbial traits and to develop models flexible enough to consider a range of hypothesized microbial responses.</p></article>", "keywords": ["2. Zero hunger", "microbial model", "carbon use efficiency", "nitrogen limitation", "Forestry", "extracellular enzymes", "litter decomposition", "04 agricultural and veterinary sciences", "Biological Sciences", "SD1-669.5", "15. Life on land", "microbial stoichiometry", "C/N ratio", "C:N ratio", "12. Responsible consumption", "Environmental sciences", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Biologiska vetenskaper", "GE1-350"]}, "links": [{"href": "https://doi.org/10.3389/ffgc.2021.686945"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Forests%20and%20Global%20Change", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/ffgc.2021.686945", "name": "item", "description": "10.3389/ffgc.2021.686945", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/ffgc.2021.686945"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-06-11T00:00:00Z"}}, {"id": "3167308845", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-20T16:22:50Z", "type": "Journal Article", "created": "2021-06-11", "title": "Modeling Microbial Adaptations to Nutrient Limitation During Litter Decomposition", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Microbial decomposers face large stoichiometric imbalances when feeding on nutrient-poor plant residues. To meet the challenges of nutrient limitation, microorganisms might: (i) allocate less carbon (C) to growth vs. respiration or excretion (i.e., flexible C-use efficiency, CUE), (ii) produce extracellular enzymes to target compounds that supply the most limiting element, (iii) modify their cellular composition according to the external nutrient availability, and (iv) preferentially retain nutrients at senescence. These four resource use modes can have different consequences on the litter C and nitrogen (N) dynamics\u2013modes that selectively remove C from the system can reduce C storage in soil, whereas modes that delay C mineralization and increase internal N recycling could promote storage of C and N. Since we do not know which modes are dominant in litter decomposers, we cannot predict the fate of C and N released from plant residues, in particular under conditions of microbial nutrient limitation. To address this question, we developed a process-based model of litter decomposition in which these four resource use modes were implemented. We then parameterized the model using \u223c80 litter decomposition datasets spanning a broad range of litter qualities. The calibrated model variants were able to capture most of the variability in litter C, N, and lignin fractions during decomposition regardless of which modes were included. This suggests that different modes can lead to similar litter decomposition trajectories (thanks to the multiple alternative resource acquisition pathways), and that identification of dominant modes is not possible using \u201cstandard\u201d litter decomposition data (an equifinality problem). Our results thus point to the need of exploring microbial adaptations to nutrient limitation with empirical estimates of microbial traits and to develop models flexible enough to consider a range of hypothesized microbial responses.</p></article>", "keywords": ["2. Zero hunger", "microbial model", "carbon use efficiency", "nitrogen limitation", "Forestry", "extracellular enzymes", "litter decomposition", "04 agricultural and veterinary sciences", "Biological Sciences", "SD1-669.5", "15. Life on land", "microbial stoichiometry", "C/N ratio", "C:N ratio", "12. Responsible consumption", "Environmental sciences", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Biologiska vetenskaper", "GE1-350"]}, "links": [{"href": "https://doi.org/3167308845"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Forests%20and%20Global%20Change", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3167308845", "name": "item", "description": "3167308845", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3167308845"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-06-11T00:00:00Z"}}, {"id": "PMC9152356", "type": "Feature", "geometry": null, "properties": {"updated": "2026-09-20T16:24:25Z", "type": "Journal Article", "created": "2022-05-17", "title": "Interacting Bioenergetic and Stoichiometric Controls on Microbial Growth", "description": "<p>Microorganisms function as open systems that exchange matter and energy with their surrounding environment. Even though mass (carbon and nutrients) and energy exchanges are tightly linked, there is a lack of integrated approaches that combine these fluxes and explore how they jointly impact microbial growth. Such links are essential to predicting how the growth rate of microorganisms varies, especially when the stoichiometry of carbon- (C) and nitrogen (N)-uptake is not balanced. Here, we present a theoretical framework to quantify the microbial growth rate for conditions of C-, N-, and energy-(co-) limitations. We use this framework to show how the C:N ratio and the degree of reduction of the organic matter (OM), which is also the electron donor, availability of electron acceptors (EAs), and the different sources of N together control the microbial growth rate under C, nutrient, and energy-limited conditions. We show that the growth rate peaks at intermediate values of the degree of reduction of OM under oxic and C-limited conditions, but not under N-limited conditions. Under oxic conditions and with N-poor OM, the growth rate is higher when the inorganic N (NInorg)-source is ammonium compared to nitrate due to the additional energetic cost involved in nitrate reduction. Under anoxic conditions, when nitrate is both EA and NInorg-source, the growth rates of denitrifiers and microbes performing the dissimilatory nitrate reduction to ammonia (DNRA) are determined by both OM degree of reduction and nitrate-availability. Consistent with the data, DNRA is predicted to foster growth under extreme nitrate-limitation and with a reduced OM, whereas denitrifiers are favored as nitrate becomes more available and in the presence of oxidized OM. Furthermore, the growth rate is reduced when catabolism is coupled to low energy yielding EAs (e.g., sulfate) because of the low carbon use efficiency (CUE). However, the low CUE also decreases the nutrient demand for growth, thereby reducing N-limitation. We conclude that bioenergetics provides a useful conceptual framework for explaining growth rates under different metabolisms and multiple resource-limitations.</p", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "denitrification", "660", "nitrogen limitation", "microbial growth", "Biological Sciences", "bioenergetics", "Microbiology", "QR1-502", "6. Clean water", "stoichiometry", "DNRA", "thermodynamics", "03 medical and health sciences", "Geovetenskap och relaterad milj\u00f6vetenskap", "Microbiology (Microbiology in the medical area to be 30109)", "13. Climate action", "Biologiska vetenskaper", "Bioenergy", "Earth and Related Environmental Sciences", "energy limitation"]}, "links": [{"href": "https://pub.epsilon.slu.se/28342/1/chakrawal-a-et-al-220615.pdf"}, {"href": "https://doi.org/PMC9152356"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC9152356", "name": "item", "description": "PMC9152356", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC9152356"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-05-17T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=nitrogen+limitation&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=nitrogen+limitation&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=nitrogen+limitation&", "hreflang": "en-US"}, {"rel": "last", "type": "application/geo+json", "title": "items (last)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=nitrogen+limitation&offset=6", "hreflang": "en-US"}], "numberMatched": 6, "numberReturned": 6, "distributedFeatures": [], "timeStamp": "2026-09-20T23:02:48.165580Z"}