{"type": "FeatureCollection", "features": [{"id": "10.1007/s00248-018-1305-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:14:50Z", "type": "Journal Article", "created": "2018-12-08", "title": "Soil Type and Cyanobacteria Species Influence the Macromolecular and Chemical Characteristics of the Polysaccharidic Matrix in Induced Biocrusts", "description": "Inoculation of soils with cyanobacteria is proposed as a sustainable biotechnological technique for restoration of degraded areas in drylands due to the important role that cyanobacteria and their exopolysaccharides (EPS) play in the environment. So far, few studies have analyzed the macromolecular and chemical characteristics of the polysaccharidic matrix in induced cyanobacterial biocrusts and the scarce existing studies have mainly focused on sandy soil textures. However, the characteristics of the cyanobacterial polysaccharidic matrix may greatly depend on soil type. The objective of this study was to examine the macromolecular distribution and monosaccharidic composition of the polysaccharidic matrix induced by inoculation of two cyanobacterial species common in arid environments, Phormidium ambiguum (non N-fixing) and Scytonema javanicum (N-fixing) in different soil types. S. javanicum promoted a higher release in the soil of the more soluble and less condensed EPS fraction (i.e., the loosely bound EPS fraction, LB-EPS), while P. ambiguum showed a higher release of the less soluble and more condensed EPS fraction (i.e., the tightly bound EPS fraction, TB-EPS). LB-EPSs were mainly composed of low MW molecules (<\u200950\u00a0kDa), while TB-EPSs were mainly composed of high MW molecules (1100-2000\u00a0kDa). The two EPS fractions showed a complex monosaccharidic composition (from 11 to 12 different types of monosaccharides), with glucose as the most abundant monosaccharide, in particular in the poorer soils characterized by lower organic C contents. In more C-rich soils, high abundances of galactose, mannose, and xylose were also found. Low abundance of uronic acids and hydrophobic monosaccharides, such as fucose and rhamnose, was found in the EPS extracted from the inoculated soils. Our results point to the influence of soil type on the macromolecular distribution and monosaccharide composition of the polysaccharidic matrix in induced biocrusts, which is likely to affect biocrust development and their role in soil structure and nutrient cycling in restored dryland soils.", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Cyanobacteria inoculation", "Tightly bound EPS", "Polysaccharides", " Bacterial", "Biological soil crust; Cyanobacteria inoculation; Loosely bound EPS; Molecular weight; Monosaccharide composition; Tightly bound EPS; Ecology; Evolution; Behavior and Systematics; Ecology; Soil Science", "Biological soil crust", "Monosaccharide composition", "15. Life on land", "Cyanobacteria", "Molecular weight", "Biological soil crust; Cyanobacteria inoculation; Loosely bound EPS; Molecular weight; Monosaccharide composition; Tightly bound EPS; Ecology", " Evolution", " Behavior and Systematics; Ecology; Soil Science", "Soil", "03 medical and health sciences", "13. Climate action", "Loosely bound EPS", "Desert Climate", "Soil Microbiology"]}, "links": [{"href": "https://iris.unive.it/bitstream/10278/5089943/1/s00248-018-1305-y.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1007/s00248-018-1305-y.pdf"}, {"href": "https://doi.org/10.1007/s00248-018-1305-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00248-018-1305-y", "name": "item", "description": "10.1007/s00248-018-1305-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00248-018-1305-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-12-08T00:00:00Z"}}, {"id": "10.1007/s11356-019-06822-3", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-05-30T16:15:38Z", "type": "Journal Article", "created": "2019-12-02", "title": "Effect of alkaline pretreatments on the enzymatic hydrolysis of wheat straw", "description": "Lignocellulosic materials are mainly consisted of lignin, cellulose, and hemicellulose. Lignin is recognized as the main obstacle for the enzymatic saccharification of cellulose towards the fermentable sugars' production. Hence, the removal of lignin from the lignocellulosic feedstock is beneficial for reducing the recalcitrance of lignocellulose for enzymatic attack. For this purpose, various different alkaline pretreatments were examined in order to study their effect on the enzymatic saccharification of wheat straw, as a typical lignocellulosic material. Results revealed that the alkaline pretreatments promoted delignification reactions. Regarding the removal of lignin, the most efficient pretreatments were alkaline treatment with hydrogen peroxide 10% and NaOH 2% autoclave with delignification efficiencies of 89.60% and 84.86% respectively. X-ray diffraction analysis was performed to enlighten the structural changes of raw and pretreated materials. The higher the delignification of the raw material, the higher the conversion of cellulose during enzymatic saccharification. In all cases after enzymatic saccharification, the cellulosic conversion was much higher (32-77%) than the untreated wheat straw (8.6%). After undergoing alkaline peroxide 10% pretreatment and cellulase treatment, 99% of the initial raw straw was eventually solubilized. Thus, wheat straw could be considered as an ideal material for the production of glucose with proper pretreatments and effective enzymatic hydrolysis.", "keywords": ["0106 biological sciences", "Cellulase", "Polysaccharides", "Hydrolysis", "Cellulose", "Lignin", "01 natural sciences", "Triticum", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11356-019-06822-3.pdf"}, {"href": "https://doi.org/10.1007/s11356-019-06822-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20and%20Pollution%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11356-019-06822-3", "name": "item", "description": "10.1007/s11356-019-06822-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11356-019-06822-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-12-01T00:00:00Z"}}, {"id": "10.1094/mpmi-03-24-0024-r", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:19:05Z", "type": "Journal Article", "created": "2024-06-21", "title": "Rhizobial Secretion of Truncated Exopolysaccharides Severely Impairs the Mesorhizobium-Lotus Symbiosis", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p> The symbiosis between Mesorhizobium japonicum R7A and Lotus japonicus Gifu is an important model system for investigating the role of bacterial exopolysaccharides (EPS) in plant-microbe interactions. Previously, we showed that R7A exoB mutants that are affected at an early stage of EPS synthesis and in lipopolysaccharide (LPS) synthesis induce effective nodules on L. japonicus Gifu after a delay, whereas exoU mutants affected in the biosynthesis of the EPS side chain induce small uninfected nodule primordia and are impaired in infection. The presence of a halo around the exoU mutant when grown on Calcofluor-containing media suggested the mutant secreted a truncated version of R7A EPS. A nonpolar \u0394 exoA mutant defective in the addition of the first glucose residue to the EPS backbone was also severely impaired symbiotically. Here, we used a suppressor screen to show that the severe symbiotic phenotype of the exoU mutant was due to the secretion of an acetylated pentasaccharide, as both monomers and oligomers, by the same Wzx/Wzy system that transports wild-type exopolysaccharide. We also present evidence that the \u0394 exoA mutant secretes an oligosaccharide by the same transport system, contributing to its symbiotic phenotype. In contrast, \u0394 exoYF and polar exoA and exoL mutants have a similar phenotype to exoB mutants, forming effective nodules after a delay. These studies provide substantial evidence that secreted incompatible EPS is perceived by the plant, leading to abrogation of the infection process. </p><p> [Formula: see text] Copyright \u00a9 2024 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license . </p></article>", "keywords": ["0301 basic medicine", "0303 health sciences", "exo mutants", "exopolysaccharide secretion", "Polysaccharides", " Bacterial", "Botany", "Mesorhizobium", "Microbiology", "QR1-502", "03 medical and health sciences", "Bacterial Proteins", "QK1-989", "Mutation", "Mesorhizobium-Lotus symbiosis", "Lotus", "truncated exopolysaccharide", "Symbiosis", "Root Nodules", " Plant"]}, "links": [{"href": "https://doi.org/10.1094/mpmi-03-24-0024-r"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Molecular%20Plant-Microbe%20Interactions%C2%AE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1094/mpmi-03-24-0024-r", "name": "item", "description": "10.1094/mpmi-03-24-0024-r", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1094/mpmi-03-24-0024-r"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-09-01T00:00:00Z"}}, {"id": "10.1128/msystems.00495-19", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:19:56Z", "type": "Journal Article", "created": "2020-04-13", "title": "Energetic Basis of Microbial Growth and Persistence in Desert Ecosystems", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Microbial life is surprisingly abundant and diverse in global desert ecosystems. In these environments, microorganisms endure a multitude of physicochemical stresses, including low water potential, carbon and nitrogen starvation, and extreme temperatures. In this review, we summarize our current understanding of the energetic mechanisms and trophic dynamics that underpin microbial function in desert ecosystems. Accumulating evidence suggests that dormancy is a common strategy that facilitates microbial survival in response to water and carbon limitation.</p></article>", "keywords": ["0301 basic medicine", "dormancy", "CYANOBACTERIAL EXOPOLYSACCHARIDES", "Trace gas", "Microbiology", "SOIL CRUSTS", "Energy reserve", "HIGH-AFFINITY", "03 medical and health sciences", "trace gas", "ATMOSPHERIC TRACE GASES", "Energetics", "energy reserve", "Dormancy", "SOR RONDANE MOUNTAINS", "Desert", "Photosynthesis", "106026 Ecosystem research", "CARBON-MONOXIDE", "desert", "ATACAMA DESERT", "energetics", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "photosynthesis", "COMMUNITY RESPONSE", "15. Life on land", "QR1-502", "106026 \u00d6kosystemforschung", "DRY SOIL", "13. Climate action", "MOLECULAR-HYDROGEN", "106022 Microbiology", "Minireview"]}, "links": [{"href": "https://journals.asm.org/doi/pdf/10.1128/mSystems.00495-19"}, {"href": "https://doi.org/10.1128/msystems.00495-19"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/mSystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/msystems.00495-19", "name": "item", "description": "10.1128/msystems.00495-19", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/msystems.00495-19"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-28T00:00:00Z"}}, {"id": "10.1126/science.ade9204", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:19:55Z", "type": "Journal Article", "created": "2023-01-19", "title": "Nanobody-driven signaling reveals the core receptor complex in root nodule symbiosis", "description": "<p>             Understanding the composition and activation of multicomponent receptor complexes is a challenge in biology. To address this, we developed a synthetic approach based on nanobodies to drive assembly and activation of cell surface receptors and apply the concept by manipulating receptors that govern plant symbiosis with nitrogen-fixing bacteria. We show that the             Lotus japonicus             Nod factor receptors NFR1 and NFR5 constitute the core receptor complex initiating the cortical root nodule organogenesis program as well as the epidermal program controlling infection. We find that organogenesis signaling is mediated by the intracellular kinase domains whereas infection requires functional ectodomains. Finally, we identify evolutionarily distant barley receptors that activate root nodule organogenesis, which could enable engineering of biological nitrogen-fixation into cereals.           </p", "keywords": ["Lipopolysaccharides", "0301 basic medicine", "0303 health sciences", "Cell Membrane/metabolism", "Cell Membrane", "Single-Domain Antibodies", "Plant Proteins/genetics", "Symbiosis/physiology", "Root Nodules", " Plant/metabolism", "03 medical and health sciences", "Gene Expression Regulation", " Plant", "Medicago truncatula", "Lotus", "Root Nodules", " Plant", "Symbiosis", "Lipopolysaccharides/metabolism", "Plant Proteins", "Signal Transduction"]}, "links": [{"href": "https://www.science.org/doi/pdf/10.1126/science.ade9204"}, {"href": "https://doi.org/10.1126/science.ade9204"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1126/science.ade9204", "name": "item", "description": "10.1126/science.ade9204", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1126/science.ade9204"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-20T00:00:00Z"}}, {"id": "10.1371/journal.pbio.3002127", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:20:15Z", "type": "Journal Article", "created": "2023-05-18", "title": "A glycan receptor kinase facilitates intracellular accommodation of arbuscular mycorrhiza and symbiotic rhizobia in the legume Lotus japonicus", "description": "<p>Receptors that distinguish the multitude of microbes surrounding plants in the environment enable dynamic responses to the biotic and abiotic conditions encountered. In this study, we identify and characterise a glycan receptor kinase, EPR3a, closely related to the exopolysaccharide receptor EPR3. Epr3a is up-regulated in roots colonised by arbuscular mycorrhizal (AM) fungi and is able to bind glucans with a branching pattern characteristic of surface-exposed fungal glucans. Expression studies with cellular resolution show localised activation of the Epr3a promoter in cortical root cells containing arbuscules. Fungal infection and intracellular arbuscule formation are reduced in epr3a mutants. In vitro, the EPR3a ectodomain binds cell wall glucans in affinity gel electrophoresis assays. In microscale thermophoresis (MST) assays, rhizobial exopolysaccharide binding is detected with affinities comparable to those observed for EPR3, and both EPR3a and EPR3 bind a well-defined \uffce\uffb2-1,3/\uffce\uffb2-1,6 decasaccharide derived from exopolysaccharides of endophytic and pathogenic fungi. Both EPR3a and EPR3 function in the intracellular accommodation of microbes. However, contrasting expression patterns and divergent ligand affinities result in distinct functions in AM colonisation and rhizobial infection in Lotus japonicus. The presence of Epr3a and Epr3 genes in both eudicot and monocot plant genomes suggest a conserved function of these receptor kinases in glycan perception.</p", "keywords": ["570", "QH301-705.5", "ANZSRC::30 Agricultural", "MESORHIZOBIUM-LOTI", "Plant Roots", "veterinary and food sciences", "ROOT", "Polysaccharides", "Gene Expression Regulation", " Plant", "Mycorrhizae", "CELL", "Biology (General)", "Symbiosis", "Glucans", "Plant Proteins", "FUNGAL", "PERCEPTION", "ANZSRC::31 Biological sciences", "LAMINARIN", "Phosphotransferases", "500", "TRANSFORMATION", "EVOLUTION", "ANZSRC::32 Biomedical and clinical sciences", "DEFENSE RESPONSES", "Mutation", "Lotus", "EXOPOLYSACCHARIDE", "Root Nodules", " Plant", "Research Article", "Rhizobium"]}, "links": [{"href": "https://doi.org/10.1371/journal.pbio.3002127"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pbio.3002127", "name": "item", "description": "10.1371/journal.pbio.3002127", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pbio.3002127"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-05-18T00:00:00Z"}}, {"id": "10.3389/fenvs.2018.00032", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:21:35Z", "type": "Journal Article", "created": "2018-05-25", "title": "Correlative Visualization of Root Mucilage Degradation Using X-ray CT and MRI", "description": "Root exudates are a crucial component of the rhizosphere. Often, they take a form of a gel exuded by the plant roots and are thought to influence the soil aggregation, root penetration into soil, soil nutrient availability, immobilization of toxic cations, and microbial activity amongst other things. In addition, the capacity of exudates to store water makes the plants potentially less susceptive to drought. Major components of root exudates are high molecular weight organic compounds consisting of predominantly polysaccharides and proteins, which makes it challenging to visualize using current rhizosphere visualization techniques, such as X-ray computed tomography (CT). In this contribution, we use correlative X-ray CT (resolution ~20 \u03bcm) in combination with Magnetic Resonance Imaging (MRI, resolution ~120 \u03bcm) to set up groundwork to enable in situ visualization of mucilage in soil. This multimodal approach is necessary because mucilage density closely matches that of water. We use chia seeds as mucilage analog, because it has been found to have a similar consistency to root mucilage. Moreover, to understand mucilage development in time, a series of samples made by chia seeds placed in different porous media were prepared. Structurally and chemically, mucilage breaks down toward a water-like substance over a course of 2 weeks. Depending on its relative concentration, these changes were found to be less dominant when seeds were mixed in porous media. Having set up the groundwork for correlative imaging of chia seeds in water and an artificial soil (Nafion and sand/beads) this enables us to expand this imaging to deal with plant root exudates under natural conditions.", "keywords": ["2. Zero hunger", "570", "X-ray CT", "chia", "polysaccharides", "04 agricultural and veterinary sciences", "15. Life on land", "630", "6. Clean water", "root-exudate", "Environmental sciences", "1H-MRI", "0401 agriculture", " forestry", " and fisheries", "GE1-350", "mucilage"]}, "links": [{"href": "https://eprints.soton.ac.uk/421014/1/NMRI_imaging_chia_review_final_2_TR_01_05_2018.pdf"}, {"href": "https://eprints.soton.ac.uk/421014/2/fenvs_06_00032.pdf"}, {"href": "https://doi.org/10.3389/fenvs.2018.00032"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Environmental%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fenvs.2018.00032", "name": "item", "description": "10.3389/fenvs.2018.00032", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fenvs.2018.00032"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-05-25T00:00:00Z"}}, {"id": "10.3389/fenvs.2018.00049", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:21:35Z", "type": "Journal Article", "created": "2018-06-11", "title": "Cyanobacteria Inoculation Improves Soil Stability and Fertility on Different Textured Soils: Gaining Insights for Applicability in Soil Restoration", "description": "Cyanobacteria are ubiquitous components of biocrust communities and the first colonizers of terrestrial ecosystems. They play multiple roles in the soil by fixing C and N and synthesizing exopolysaccharides, which increase soil fertility and water retention and improve soil structure and stability. Application of cyanobacteria as inoculants to promote biocrust development has been proposed as a novel biotechnological technique for restoring barren degraded areas and combating desertification processes in arid lands. However, previous to their widespread application under field conditions, research is needed to ensure the selection of the most suitable species. In this study, we inoculated two cyanobacterial species, Phormidium ambiguum (non N-fixing) and Scytonema javanicum (N-fixing), on different textured soils (from silt loam to sandy), and analyzed cyanobacteria biocrust development and evolution of physicochemical soil properties for 3 months under laboratory conditions. Cyanobacteria inoculation led to biocrust formation in all soil types. Scanning electron microscope (SEM) images showed contrasting structure of the biocrust induced by the two cyanobacteria. The one from P. ambiguum was characterized by thin filaments that enveloped soil particles and created a dense, entangled network, while the one from S. javanicum consisted of thicker filaments that grouped as bunches in between soil particles. Biocrust development, assessed by chlorophyll a content and crust spectral properties, was higher in S. javanicum-inoculated soils compared to P. ambiguum-inoculated soils. Either cyanobacteria inoculation did not increase soil hydrophobicity. S. javanicum promoted a higher increase in total organic C and total N content, while P. ambiguum was more effective in increasing total exopolysaccharide (EPS) content and soil penetration resistance. The effects of cyanobacteria inoculation also differed among soil types and the highest improvement in soil fertility compared to non-inoculated soils was found in sandy and silty soils, which originally had lowest fertility. On the whole, the improvement in soil fertility and stability supports the viability of using cyanobacteria to restore degraded arid soils.", "keywords": ["2. Zero hunger", "Exopolysaccharides", "Soil nitrogen", "exopolysaccharides", "organic carbon", "soil nitrogen", "04 agricultural and veterinary sciences", "15. Life on land", "biocrust development", "Soil degradation", "01 natural sciences", "6. Clean water", "Environmental sciences", "soil degradation", "Biocrust development", "0401 agriculture", " forestry", " and fisheries", "GE1-350", "autotrophic organisms", "Autotrophic organisms", "Autotrophic organisms; Biocrust development; Exopolysaccharides; Organic carbon; Soil degradation; Soil nitrogen", "Organic carbon", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://flore.unifi.it/bitstream/2158/1131521/1/Frontiers%20Env%20Science%20June%202018.pdf"}, {"href": "https://doi.org/10.3389/fenvs.2018.00049"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Environmental%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fenvs.2018.00049", "name": "item", "description": "10.3389/fenvs.2018.00049", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fenvs.2018.00049"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-06-11T00:00:00Z"}}, {"id": "10.3389/fpls.2020.00270", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:21:40Z", "type": "Journal Article", "created": "2020-03-10", "title": "Formulation of Microbial Inoculants by Encapsulation in Natural Polysaccharides: Focus on Beneficial Properties of Carrier Additives and Derivatives", "description": "In the last 10-15 years, the wide application of bioformulated plant beneficial microorganisms is accepted as an effective alternative of chemical agro-products. Two main problems can be distinguished in their production and application: (a) economical competiveness based on the overall up-stream and down-stream operational costs, and (b) development of commercial products with a high soil-plant colonization potential in controlled conditions but not able to effectively mobilize soil nutrients and/or combat plant pathogens in the field. To solve the above problems, microbe-based formulations produced by immobilization methods are gaining attention as they demonstrate a large number of advantages compared to other solid and liquid formulations. This mini-review summarizes the knowledge of additional compounds that form part of the bioformulations. The additives can exert economical, price-decreasing effects as bulking agents or direct effects improving microbial survival during storage and after introduction into soil with simultaneous beneficial effects on soil and plants. In some studies, combinations of additives are used with a complex impact, which improves the overall characteristics of the final products. Special attention is paid to polysaccharide carriers and their derivates, which play stimulatory role on plants but are less studied. The mini-review also focuses on the potential difficulty in evaluating the effects of complex bio-formulations.", "keywords": ["biofertilizers", "2. Zero hunger", "0301 basic medicine", "0303 health sciences", "biofertilizers", " formulation", " immobilization", " polysaccharides", " additives", "polysaccharides", "Plant culture", "formulation", "Plant Science", "Biofertilizers", "6. Clean water", "SB1-1110", "12. Responsible consumption", "Immobilization", "03 medical and health sciences", "Formulation", "Polysaccharides", "immobilization", "additives"]}, "links": [{"href": "https://doi.org/10.3389/fpls.2020.00270"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fpls.2020.00270", "name": "item", "description": "10.3389/fpls.2020.00270", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fpls.2020.00270"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-03-10T00:00:00Z"}}, {"id": "10.3390/molecules26164755", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:21:55Z", "type": "Journal Article", "created": "2021-08-06", "title": "Controlling the Carbon-Bio Interface via Glycan Functional Adlayers for Applications in Microbial Fuel Cell Bioanodes", "description": "<p>Surface modification of electrodes with glycans was investigated as a strategy for modulating the development of electrocatalytic biofilms for microbial fuel cell applications. Covalent attachment of phenyl-mannoside and phenyl-lactoside adlayers on graphite rod electrodes was achieved via electrochemically assisted grafting of aryldiazonium cations from solution. To test the effects of the specific bio-functionalities, modified and unmodified graphite rods were used as anodes in two-chamber microbial fuel cell devices. Devices were set up with wastewater as inoculum and acetate as nutrient and their performance, in terms of output potential (open circuit and 1 k\uffe2\uff84\uffa6 load) and peak power output, was monitored over two months. The presence of glycans was found to lead to significant differences in startup times and peak power outputs. Lactosides were found to inhibit the development of biofilms when compared to bare graphite. Mannosides were found, instead, to promote exoelectrogenic biofilm adhesion and anode colonization, a finding that is supported by quartz crystal microbalance experiments in inoculum media. These differences were observed despite both adlayers possessing thickness in the nm range and similar hydrophilic character. This suggests that specific glycan-mediated bioaffinity interactions can be leveraged to direct the development of biotic electrocatalysts in bioelectrochemical systems and microbial fuel cell devices.</p>", "keywords": ["microbial fuel cells", "Bioelectric Energy Sources", "Surface Properties", "carbon", "Organic chemistry", "02 engineering and technology", "7. Clean energy", "Article", "Carbon", "6. Clean water", "aryldiazonium", "bioanodes", "QD241-441", "Polysaccharides", "Biofilms", "[CHIM] Chemical Sciences", "functionalization", "electrocatalysis", "Graphite", "0210 nano-technology", "Electrodes", "bioelectrochemical systems"]}, "links": [{"href": "http://www.mdpi.com/1420-3049/26/16/4755/pdf"}, {"href": "https://www.mdpi.com/1420-3049/26/16/4755/pdf"}, {"href": "https://doi.org/10.3390/molecules26164755"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Molecules", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/molecules26164755", "name": "item", "description": "10.3390/molecules26164755", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/molecules26164755"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-08-06T00:00:00Z"}}, {"id": "10182/16842", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:25:45Z", "type": "Journal Article", "created": "2023-05-18", "title": "A glycan receptor kinase facilitates intracellular accommodation of arbuscular mycorrhiza and symbiotic rhizobia in the legume Lotus japonicus", "description": "<p>Receptors that distinguish the multitude of microbes surrounding plants in the environment enable dynamic responses to the biotic and abiotic conditions encountered. In this study, we identify and characterise a glycan receptor kinase, EPR3a, closely related to the exopolysaccharide receptor EPR3. Epr3a is up-regulated in roots colonised by arbuscular mycorrhizal (AM) fungi and is able to bind glucans with a branching pattern characteristic of surface-exposed fungal glucans. Expression studies with cellular resolution show localised activation of the Epr3a promoter in cortical root cells containing arbuscules. Fungal infection and intracellular arbuscule formation are reduced in epr3a mutants. In vitro, the EPR3a ectodomain binds cell wall glucans in affinity gel electrophoresis assays. In microscale thermophoresis (MST) assays, rhizobial exopolysaccharide binding is detected with affinities comparable to those observed for EPR3, and both EPR3a and EPR3 bind a well-defined \uffce\uffb2-1,3/\uffce\uffb2-1,6 decasaccharide derived from exopolysaccharides of endophytic and pathogenic fungi. Both EPR3a and EPR3 function in the intracellular accommodation of microbes. However, contrasting expression patterns and divergent ligand affinities result in distinct functions in AM colonisation and rhizobial infection in Lotus japonicus. The presence of Epr3a and Epr3 genes in both eudicot and monocot plant genomes suggest a conserved function of these receptor kinases in glycan perception.</p", "keywords": ["570", "QH301-705.5", "ANZSRC::30 Agricultural", "MESORHIZOBIUM-LOTI", "Plant Roots", "veterinary and food sciences", "ROOT", "Polysaccharides", "Gene Expression Regulation", " Plant", "Mycorrhizae", "CELL", "Biology (General)", "Symbiosis", "Glucans", "Plant Proteins", "FUNGAL", "PERCEPTION", "ANZSRC::31 Biological sciences", "LAMINARIN", "Phosphotransferases", "500", "TRANSFORMATION", "EVOLUTION", "ANZSRC::32 Biomedical and clinical sciences", "DEFENSE RESPONSES", "Mutation", "Lotus", "EXOPOLYSACCHARIDE", "Root Nodules", " Plant", "Research Article", "Rhizobium"]}, "links": [{"href": "https://doi.org/10182/16842"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10182/16842", "name": "item", "description": "10182/16842", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10182/16842"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-05-18T00:00:00Z"}}, {"id": "2158/1145846", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:26:51Z", "type": "Journal Article", "created": "2018-12-08", "title": "Soil Type and Cyanobacteria Species Influence the Macromolecular and Chemical Characteristics of the Polysaccharidic Matrix in Induced Biocrusts", "description": "Inoculation of soils with cyanobacteria is proposed as a sustainable biotechnological technique for restoration of degraded areas in drylands due to the important role that cyanobacteria and their exopolysaccharides (EPS) play in the environment. So far, few studies have analyzed the macromolecular and chemical characteristics of the polysaccharidic matrix in induced cyanobacterial biocrusts and the scarce existing studies have mainly focused on sandy soil textures. However, the characteristics of the cyanobacterial polysaccharidic matrix may greatly depend on soil type. The objective of this study was to examine the macromolecular distribution and monosaccharidic composition of the polysaccharidic matrix induced by inoculation of two cyanobacterial species common in arid environments, Phormidium ambiguum (non N-fixing) and Scytonema javanicum (N-fixing) in different soil types. S. javanicum promoted a higher release in the soil of the more soluble and less condensed EPS fraction (i.e., the loosely bound EPS fraction, LB-EPS), while P. ambiguum showed a higher release of the less soluble and more condensed EPS fraction (i.e., the tightly bound EPS fraction, TB-EPS). LB-EPSs were mainly composed of low MW molecules (<\u200950\u00a0kDa), while TB-EPSs were mainly composed of high MW molecules (1100-2000\u00a0kDa). The two EPS fractions showed a complex monosaccharidic composition (from 11 to 12 different types of monosaccharides), with glucose as the most abundant monosaccharide, in particular in the poorer soils characterized by lower organic C contents. In more C-rich soils, high abundances of galactose, mannose, and xylose were also found. Low abundance of uronic acids and hydrophobic monosaccharides, such as fucose and rhamnose, was found in the EPS extracted from the inoculated soils. Our results point to the influence of soil type on the macromolecular distribution and monosaccharide composition of the polysaccharidic matrix in induced biocrusts, which is likely to affect biocrust development and their role in soil structure and nutrient cycling in restored dryland soils.", "keywords": ["0301 basic medicine", "2. Zero hunger", "Soil", "0303 health sciences", "03 medical and health sciences", "13. Climate action", "Polysaccharides", " Bacterial", "Biological soil crust; Cyanobacteria inoculation; Loosely bound EPS; Molecular weight; Monosaccharide composition; Tightly bound EPS; Ecology; Evolution; Behavior and Systematics; Ecology; Soil Science", "Desert Climate", "15. Life on land", "Cyanobacteria", "Biological soil crust; Cyanobacteria inoculation; Loosely bound EPS; Molecular weight; Monosaccharide composition; Tightly bound EPS; Ecology", " Evolution", " Behavior and Systematics; Ecology; Soil Science", "Soil Microbiology"]}, "links": [{"href": "https://iris.unive.it/bitstream/10278/5089943/1/s00248-018-1305-y.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1007/s00248-018-1305-y.pdf"}, {"href": "https://doi.org/2158/1145846"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2158/1145846", "name": "item", "description": "2158/1145846", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2158/1145846"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-12-08T00:00:00Z"}}, {"id": "10481/61755", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:25:58Z", "type": "Journal Article", "created": "2020-03-10", "title": "Formulation of Microbial Inoculants by Encapsulation in Natural Polysaccharides: Focus on Beneficial Properties of Carrier Additives and Derivatives", "description": "In the last 10-15 years, the wide application of bioformulated plant beneficial microorganisms is accepted as an effective alternative of chemical agro-products. Two main problems can be distinguished in their production and application: (a) economical competiveness based on the overall up-stream and down-stream operational costs, and (b) development of commercial products with a high soil-plant colonization potential in controlled conditions but not able to effectively mobilize soil nutrients and/or combat plant pathogens in the field. To solve the above problems, microbe-based formulations produced by immobilization methods are gaining attention as they demonstrate a large number of advantages compared to other solid and liquid formulations. This mini-review summarizes the knowledge of additional compounds that form part of the bioformulations. The additives can exert economical, price-decreasing effects as bulking agents or direct effects improving microbial survival during storage and after introduction into soil with simultaneous beneficial effects on soil and plants. In some studies, combinations of additives are used with a complex impact, which improves the overall characteristics of the final products. Special attention is paid to polysaccharide carriers and their derivates, which play stimulatory role on plants but are less studied. The mini-review also focuses on the potential difficulty in evaluating the effects of complex bio-formulations.", "keywords": ["biofertilizers", "0301 basic medicine", "2. Zero hunger", "0303 health sciences", "polysaccharides", "Plant culture", "formulation", "Plant Science", "Biofertilizers", "6. Clean water", "SB1-1110", "12. Responsible consumption", "Immobilization", "03 medical and health sciences", "Formulation", "Polysaccharides", "immobilization", "additives"]}, "links": [{"href": "https://doi.org/10481/61755"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10481/61755", "name": "item", "description": "10481/61755", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10481/61755"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-03-10T00:00:00Z"}}, {"id": "20.500.12556/RUL-156266", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:26:42Z", "type": "Journal Article", "created": "2024-03-16", "title": "Response of the terrestrial isopod Porcellio scaber to lipopolysaccharide challenge after microplastic and insecticide exposure", "description": "The exposure of organisms to microplastics could compromise their ability to cope with other environmental stressors, such as infections. In this context, we investigated the effects of a 14-day exposure of the terrestrial isopod Porcellio scaber to tire particles in soil (1.5\u00a0% w w-1 dry weight) on the organisms' response to a secondary exposure, i.e., injection of the bacterial endotoxin lipopolysaccharide. In addition, the insecticide chlorpyrifos (2\u00a0mg\u00a0kg-1 dry weight) was tested as a positive control. The survival and immune response of P. scaber was assessed at the end of the 7- and 14-day primary exposure and two days after the secondary exposure, by analyzing selected haemolymph immune parameters (total haemocyte count, differential haemocyte count, and haemocyte viability). No change in survival was observed after primary exposure of P. scaber to tire particles or chlorpyrifos. However, primary exposure to chlorpyrifos triggered a strong activation of the immune response, which was not the case following exposure to the tire particles. Further injection of lipopolysaccharide into the body did not affect the survival of animals exposed to tire particles or chlorpyrifos, while a strong immunomodulatory change was observed, particularly with chlorpyrifos, and to some extent, tire particles. Based on these results, we conclude that exposure of P. scaber to tire particles or chlorpyrifos has no significant effect on the susceptibility of the organism to lipopolysaccharide in terms of their mortality, but primary exposure to an insecticide significantly modulates the immune response of the organisms to a second stressor. We discuss the 'stress on stress' approach for testing low-toxic substances, such as microplastics, where an environmentally realistic exposure is followed by a secondary exposure.", "keywords": ["Lipopolysaccharides", "Insecticides", "zemlja", "chlorpyrifos insecticide", "Microplastics", "insekticid klorpirifos", "Porcellio scaber", "organism susceptibility", "infection", "soil", "delci pnevmatike", "Animals", "tire particles", "Chlorpyrifos", "woodlice", "ob\u010dutljivost organizma", "Plastics", "info:eu-repo/classification/udc/504", "Isopoda"]}, "links": [{"href": "https://doi.org/20.500.12556/RUL-156266"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "20.500.12556/RUL-156266", "name": "item", "description": "20.500.12556/RUL-156266", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/20.500.12556/RUL-156266"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-05-01T00:00:00Z"}}, {"id": "2158/1131521", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:26:51Z", "type": "Journal Article", "created": "2018-06-11", "title": "Cyanobacteria Inoculation Improves Soil Stability and Fertility on Different Textured Soils: Gaining Insights for Applicability in Soil Restoration", "description": "Cyanobacteria are ubiquitous components of biocrust communities and the first colonizers of terrestrial ecosystems. They play multiple roles in the soil by fixing C and N and synthesizing exopolysaccharides, which increase soil fertility and water retention and improve soil structure and stability. Application of cyanobacteria as inoculants to promote biocrust development has been proposed as a novel biotechnological technique for restoring barren degraded areas and combating desertification processes in arid lands. However, previous to their widespread application under field conditions, research is needed to ensure the selection of the most suitable species. In this study, we inoculated two cyanobacterial species, Phormidium ambiguum (non N-fixing) and Scytonema javanicum (N-fixing), on different textured soils (from silt loam to sandy), and analyzed cyanobacteria biocrust development and evolution of physicochemical soil properties for 3 months under laboratory conditions. Cyanobacteria inoculation led to biocrust formation in all soil types. Scanning electron microscope (SEM) images showed contrasting structure of the biocrust induced by the two cyanobacteria. The one from P. ambiguum was characterized by thin filaments that enveloped soil particles and created a dense, entangled network, while the one from S. javanicum consisted of thicker filaments that grouped as bunches in between soil particles. Biocrust development, assessed by chlorophyll a content and crust spectral properties, was higher in S. javanicum-inoculated soils compared to P. ambiguum-inoculated soils. Either cyanobacteria inoculation did not increase soil hydrophobicity. S. javanicum promoted a higher increase in total organic C and total N content, while P. ambiguum was more effective in increasing total exopolysaccharide (EPS) content and soil penetration resistance. The effects of cyanobacteria inoculation also differed among soil types and the highest improvement in soil fertility compared to non-inoculated soils was found in sandy and silty soils, which originally had lowest fertility. On the whole, the improvement in soil fertility and stability supports the viability of using cyanobacteria to restore degraded arid soils.", "keywords": ["2. Zero hunger", "exopolysaccharides", "organic carbon", "soil nitrogen", "04 agricultural and veterinary sciences", "15. Life on land", "biocrust development", "01 natural sciences", "6. Clean water", "Environmental sciences", "soil degradation", "0401 agriculture", " forestry", " and fisheries", "GE1-350", "autotrophic organisms", "Autotrophic organisms; Biocrust development; Exopolysaccharides; Organic carbon; Soil degradation; Soil nitrogen", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://flore.unifi.it/bitstream/2158/1131521/1/Frontiers%20Env%20Science%20June%202018.pdf"}, {"href": "https://doi.org/2158/1131521"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Environmental%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2158/1131521", "name": "item", "description": "2158/1131521", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2158/1131521"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-06-11T00:00:00Z"}}, {"id": "2263/74486", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:26:55Z", "type": "Journal Article", "created": "2020-04-13", "title": "Energetic Basis of Microbial Growth and Persistence in Desert Ecosystems", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Microbial life is surprisingly abundant and diverse in global desert ecosystems. In these environments, microorganisms endure a multitude of physicochemical stresses, including low water potential, carbon and nitrogen starvation, and extreme temperatures. In this review, we summarize our current understanding of the energetic mechanisms and trophic dynamics that underpin microbial function in desert ecosystems. Accumulating evidence suggests that dormancy is a common strategy that facilitates microbial survival in response to water and carbon limitation.</p></article>", "keywords": ["0301 basic medicine", "dormancy", "CYANOBACTERIAL EXOPOLYSACCHARIDES", "Trace gas", "Microbiology", "SOIL CRUSTS", "Energy reserve", "HIGH-AFFINITY", "03 medical and health sciences", "trace gas", "ATMOSPHERIC TRACE GASES", "Energetics", "energy reserve", "Dormancy", "SOR RONDANE MOUNTAINS", "Desert", "Photosynthesis", "106026 Ecosystem research", "CARBON-MONOXIDE", "desert", "ATACAMA DESERT", "energetics", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "photosynthesis", "COMMUNITY RESPONSE", "15. Life on land", "QR1-502", "106026 \u00d6kosystemforschung", "DRY SOIL", "13. Climate action", "MOLECULAR-HYDROGEN", "106022 Microbiology", "Minireview"]}, "links": [{"href": "https://journals.asm.org/doi/pdf/10.1128/mSystems.00495-19"}, {"href": "https://doi.org/2263/74486"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/mSystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2263/74486", "name": "item", "description": "2263/74486", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2263/74486"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-28T00:00:00Z"}}, {"id": "2801205749", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:27:06Z", "type": "Journal Article", "created": "2018-05-25", "title": "Correlative Visualization of Root Mucilage Degradation Using X-ray CT and MRI", "description": "Root exudates are a crucial component of the rhizosphere. Often, they take a form of a gel exuded by the plant roots and are thought to influence the soil aggregation, root penetration into soil, soil nutrient availability, immobilization of toxic cations, and microbial activity amongst other things. In addition, the capacity of exudates to store water makes the plants potentially less susceptive to drought. Major components of root exudates are high molecular weight organic compounds consisting of predominantly polysaccharides and proteins, which makes it challenging to visualize using current rhizosphere visualization techniques, such as X-ray computed tomography (CT). In this contribution, we use correlative X-ray CT (resolution ~20 \u03bcm) in combination with Magnetic Resonance Imaging (MRI, resolution ~120 \u03bcm) to set up groundwork to enable in situ visualization of mucilage in soil. This multimodal approach is necessary because mucilage density closely matches that of water. We use chia seeds as mucilage analog, because it has been found to have a similar consistency to root mucilage. Moreover, to understand mucilage development in time, a series of samples made by chia seeds placed in different porous media were prepared. Structurally and chemically, mucilage breaks down toward a water-like substance over a course of 2 weeks. Depending on its relative concentration, these changes were found to be less dominant when seeds were mixed in porous media. Having set up the groundwork for correlative imaging of chia seeds in water and an artificial soil (Nafion and sand/beads) this enables us to expand this imaging to deal with plant root exudates under natural conditions.", "keywords": ["2. Zero hunger", "570", "X-ray CT", "chia", "polysaccharides", "04 agricultural and veterinary sciences", "15. Life on land", "630", "6. Clean water", "root-exudate", "Environmental sciences", "1H-MRI", "0401 agriculture", " forestry", " and fisheries", "GE1-350", "mucilage"]}, "links": [{"href": "https://eprints.soton.ac.uk/421014/1/NMRI_imaging_chia_review_final_2_TR_01_05_2018.pdf"}, {"href": "https://eprints.soton.ac.uk/421014/2/fenvs_06_00032.pdf"}, {"href": "https://doi.org/2801205749"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Environmental%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2801205749", "name": "item", "description": "2801205749", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2801205749"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-05-25T00:00:00Z"}}, {"id": "3188229186", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:27:35Z", "type": "Journal Article", "created": "2021-08-06", "title": "Controlling the Carbon-Bio Interface via Glycan Functional Adlayers for Applications in Microbial Fuel Cell Bioanodes", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Surface modification of electrodes with glycans was investigated as a strategy for modulating the development of electrocatalytic biofilms for microbial fuel cell applications. Covalent attachment of phenyl-mannoside and phenyl-lactoside adlayers on graphite rod electrodes was achieved via electrochemically assisted grafting of aryldiazonium cations from solution. To test the effects of the specific bio-functionalities, modified and unmodified graphite rods were used as anodes in two-chamber microbial fuel cell devices. Devices were set up with wastewater as inoculum and acetate as nutrient and their performance, in terms of output potential (open circuit and 1 k\u2126 load) and peak power output, was monitored over two months. The presence of glycans was found to lead to significant differences in startup times and peak power outputs. Lactosides were found to inhibit the development of biofilms when compared to bare graphite. Mannosides were found, instead, to promote exoelectrogenic biofilm adhesion and anode colonization, a finding that is supported by quartz crystal microbalance experiments in inoculum media. These differences were observed despite both adlayers possessing thickness in the nm range and similar hydrophilic character. This suggests that specific glycan-mediated bioaffinity interactions can be leveraged to direct the development of biotic electrocatalysts in bioelectrochemical systems and microbial fuel cell devices.</p></article>", "keywords": ["microbial fuel cells", "Bioelectric Energy Sources", "Surface Properties", "carbon", "Organic chemistry", "02 engineering and technology", "7. Clean energy", "Article", "Carbon", "6. Clean water", "aryldiazonium", "bioanodes", "QD241-441", "Polysaccharides", "Biofilms", "[CHIM] Chemical Sciences", "functionalization", "electrocatalysis", "Graphite", "0210 nano-technology", "Electrodes", "bioelectrochemical systems"]}, "links": [{"href": "http://www.mdpi.com/1420-3049/26/16/4755/pdf"}, {"href": "https://www.mdpi.com/1420-3049/26/16/4755/pdf"}, {"href": "https://doi.org/3188229186"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Molecules", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3188229186", "name": "item", "description": "3188229186", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3188229186"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-08-06T00:00:00Z"}}, {"id": "36656954", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:27:47Z", "type": "Journal Article", "created": "2023-01-19", "title": "Nanobody-driven signaling reveals the core receptor complex in root nodule symbiosis", "description": "<p>             Understanding the composition and activation of multicomponent receptor complexes is a challenge in biology. To address this, we developed a synthetic approach based on nanobodies to drive assembly and activation of cell surface receptors and apply the concept by manipulating receptors that govern plant symbiosis with nitrogen-fixing bacteria. We show that the             Lotus japonicus             Nod factor receptors NFR1 and NFR5 constitute the core receptor complex initiating the cortical root nodule organogenesis program as well as the epidermal program controlling infection. We find that organogenesis signaling is mediated by the intracellular kinase domains whereas infection requires functional ectodomains. Finally, we identify evolutionarily distant barley receptors that activate root nodule organogenesis, which could enable engineering of biological nitrogen-fixation into cereals.           </p", "keywords": ["Lipopolysaccharides", "0301 basic medicine", "0303 health sciences", "Cell Membrane/metabolism", "Cell Membrane", "Single-Domain Antibodies", "Plant Proteins/genetics", "Symbiosis/physiology", "Root Nodules", " Plant/metabolism", "03 medical and health sciences", "Gene Expression Regulation", " Plant", "Medicago truncatula", "Lotus", "Root Nodules", " Plant", "Symbiosis", "Lipopolysaccharides/metabolism", "Plant Proteins", "Signal Transduction"]}, "links": [{"href": "https://www.science.org/doi/pdf/10.1126/science.ade9204"}, {"href": "https://doi.org/36656954"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "36656954", "name": "item", "description": "36656954", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/36656954"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-20T00:00:00Z"}}, {"id": "38904752", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:27:50Z", "type": "Journal Article", "created": "2024-06-21", "title": "Rhizobial Secretion of Truncated Exopolysaccharides Severely Impairs the Mesorhizobium-Lotus Symbiosis", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p> The symbiosis between Mesorhizobium japonicum R7A and Lotus japonicus Gifu is an important model system for investigating the role of bacterial exopolysaccharides (EPS) in plant-microbe interactions. Previously, we showed that R7A exoB mutants that are affected at an early stage of EPS synthesis and in lipopolysaccharide (LPS) synthesis induce effective nodules on L. japonicus Gifu after a delay, whereas exoU mutants affected in the biosynthesis of the EPS side chain induce small uninfected nodule primordia and are impaired in infection. The presence of a halo around the exoU mutant when grown on Calcofluor-containing media suggested the mutant secreted a truncated version of R7A EPS. A nonpolar \u0394 exoA mutant defective in the addition of the first glucose residue to the EPS backbone was also severely impaired symbiotically. Here, we used a suppressor screen to show that the severe symbiotic phenotype of the exoU mutant was due to the secretion of an acetylated pentasaccharide, as both monomers and oligomers, by the same Wzx/Wzy system that transports wild-type exopolysaccharide. We also present evidence that the \u0394 exoA mutant secretes an oligosaccharide by the same transport system, contributing to its symbiotic phenotype. In contrast, \u0394 exoYF and polar exoA and exoL mutants have a similar phenotype to exoB mutants, forming effective nodules after a delay. These studies provide substantial evidence that secreted incompatible EPS is perceived by the plant, leading to abrogation of the infection process. </p><p> [Formula: see text] Copyright \u00a9 2024 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license . </p></article>", "keywords": ["0301 basic medicine", "0303 health sciences", "exo mutants", "exopolysaccharide secretion", "Polysaccharides", " Bacterial", "Botany", "Mesorhizobium", "Microbiology", "QR1-502", "03 medical and health sciences", "Bacterial Proteins", "QK1-989", "Mutation", "Mesorhizobium-Lotus symbiosis", "Lotus", "truncated exopolysaccharide", "Symbiosis", "Root Nodules", " Plant"]}, "links": [{"href": "https://doi.org/38904752"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Molecular%20Plant-Microbe%20Interactions%C2%AE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "38904752", "name": "item", "description": "38904752", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/38904752"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-09-01T00:00:00Z"}}, {"id": "PMC8400688", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:29:53Z", "type": "Journal Article", "created": "2021-08-06", "title": "Controlling the Carbon-Bio Interface via Glycan Functional Adlayers for Applications in Microbial Fuel Cell Bioanodes", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Surface modification of electrodes with glycans was investigated as a strategy for modulating the development of electrocatalytic biofilms for microbial fuel cell applications. Covalent attachment of phenyl-mannoside and phenyl-lactoside adlayers on graphite rod electrodes was achieved via electrochemically assisted grafting of aryldiazonium cations from solution. To test the effects of the specific bio-functionalities, modified and unmodified graphite rods were used as anodes in two-chamber microbial fuel cell devices. Devices were set up with wastewater as inoculum and acetate as nutrient and their performance, in terms of output potential (open circuit and 1 k\u2126 load) and peak power output, was monitored over two months. The presence of glycans was found to lead to significant differences in startup times and peak power outputs. Lactosides were found to inhibit the development of biofilms when compared to bare graphite. Mannosides were found, instead, to promote exoelectrogenic biofilm adhesion and anode colonization, a finding that is supported by quartz crystal microbalance experiments in inoculum media. These differences were observed despite both adlayers possessing thickness in the nm range and similar hydrophilic character. This suggests that specific glycan-mediated bioaffinity interactions can be leveraged to direct the development of biotic electrocatalysts in bioelectrochemical systems and microbial fuel cell devices.</p></article>", "keywords": ["microbial fuel cells", "Bioelectric Energy Sources", "Surface Properties", "carbon", "Organic chemistry", "02 engineering and technology", "7. Clean energy", "Article", "Carbon", "6. Clean water", "aryldiazonium", "bioanodes", "QD241-441", "Polysaccharides", "Biofilms", "[CHIM] Chemical Sciences", "functionalization", "electrocatalysis", "Graphite", "0210 nano-technology", "Electrodes", "bioelectrochemical systems"]}, "links": [{"href": "http://www.mdpi.com/1420-3049/26/16/4755/pdf"}, {"href": "https://www.mdpi.com/1420-3049/26/16/4755/pdf"}, {"href": "https://doi.org/PMC8400688"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Molecules", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC8400688", "name": "item", "description": "PMC8400688", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC8400688"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-08-06T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=polysaccharides&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=polysaccharides&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=polysaccharides&", "hreflang": "en-US"}, {"rel": "last", "type": "application/geo+json", "title": "items (last)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=polysaccharides&offset=21", "hreflang": "en-US"}], "numberMatched": 21, "numberReturned": 21, "distributedFeatures": [], "timeStamp": "2026-05-30T18:09:41.703339Z"}