{"type": "FeatureCollection", "features": [{"id": "10.1016/j.apsoil.2005.03.003", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:16:06Z", "type": "Journal Article", "created": "2005-04-20", "title": "Effects Of Organic Versus Conventional Management On Chemical And Biological Parameters In Agricultural Soils", "description": "Abstract   A comparative study of organic and conventional arable farming systems was conducted in The Netherlands to determine the effect of management practices on chemical and biological soil properties and soil health. Soils from thirteen accredited organic farms and conventionally managed neighboring farms were analyzed using a polyphasic approach combining traditional soil analysis, culture-dependent and independent microbiological analyses, a nematode community analysis and an enquiry about different management practices among the farmers. Organic management, known primarily for the abstinence of artificial fertilizers and pesticides, resulted in significantly lower levels of both nitrate and total soluble nitrogen in the soil, higher numbers of bacteria of different trophic groups, as well as larger species richness in both bacteria and nematode communities and more resilience to a drying\u2013rewetting disturbance in the soil. The organic farmers plough their fields less deeply and tend to apply more organic carbon to their fields, but this did not result in a significantly higher organic carbon content in their soils. The levels of ammonium, organic nitrogen, phosphate and total phosphorus did not differ, significantly between the soils under different management. Fifty percent of the conventional Dutch farmers also used organic fertilizers and the numbers of farmers using a green crop fertilizer did not differ between the two management types. Soil type \u2013 clayey or sandy soil \u2013 in general had a much stronger effect on the soil characteristics than management type. The soil type influenced pH, nitrate, ammonium, phosphate and organic carbon levels as well as numbers of oligotrophic bacteria and of different groups of nematodes, and different diversity indices. With the collected data set certain soil characteristics could also be attributed to the use of different management practices like plow depth, crop or cover crop type or to the management history of the soil.", "keywords": ["0106 biological sciences", "2. Zero hunger", "agroecosystems", "microbial-populations", "species composition", "plant", "04 agricultural and veterinary sciences", "15. Life on land", "maturity index", "01 natural sciences", "6. Clean water", "diversity", "communities", "gradient gel-electrophoresis", "low-input", "0401 agriculture", " forestry", " and fisheries", "farming systems"], "contacts": [{"organization": "van Diepeningen, A.D., de Vos, O.J., Korthals, G.W., van Bruggen, A.H.C.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2005.03.003"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2005.03.003", "name": "item", "description": "10.1016/j.apsoil.2005.03.003", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2005.03.003"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-01-01T00:00:00Z"}}, {"id": "10.1007/s00374-011-0539-3", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:14:55Z", "type": "Journal Article", "created": "2011-01-18", "title": "Effects Of Organic And Inorganic Fertilization On Soil Bacterial And Fungal Microbial Diversity In The Kabete Long-Term Trial, Kenya", "description": "The effects of crop manure and inorganic fertilizers on composition of microbial communities of central high land soils of Kenya are poorly known. For this reason, we have carried out a thirty-two-year-old long-term trial in Kabete, Kenya. These soils were treated with organic (maize stover (MS) at 10 t ha\u22121, farmyard manure (FYM) at 10 t ha\u22121) and inorganic fertilizers 120 kg N, 52.8 kg P (N2P2), N2P2 + MS, N2P2 + FYM, a control, and a fallow for over 30 years. We examined 16S rRNA gene and 28S rRNA gene fingerprints of bacterial and fungal diversity by PCR amplification and denaturing gradient gel electrophoresis separation, respectively. The PCR bacterial community structure and diversity were negatively affected by N2P2 and were more closely related to the bacterial structure in the soils without any addition (control) than that of soils with a combination of inorganic and organic or inorganic fertilizers alone. The effect on fungal diversity by N2P2 was different than the effect on bacterial diversity since the fungal diversity was similar to that of the N2P2 + FYM and N2P2 + MS-treated. However, soils treated with organic inputs clustered away from soils amended with inorganic inputs. Organic inputs had a positive effect on both bacterial and fungal diversity with or without chemical fertilizers. Results from this study suggested that total diversity of bacterial and fungal communities was closely related to agro-ecosystem management practices and may partially explain the yield differences observed between the different treatments.", "keywords": ["[SDV.SA]Life Sciences [q-bio]/Agricultural sciences", "Microbial diversity", "soil microorganisms", "engrais organique", "http://aims.fao.org/aos/agrovoc/c_27870", "Organic and inorganic amendments", "F08 - Syst\u00e8mes et modes de culture", "rendement des cultures", "630", "fertilisation", "biodiversit\u00e9", "http://aims.fao.org/aos/agrovoc/c_4592", "http://aims.fao.org/aos/agrovoc/c_36669", "http://aims.fao.org/aos/agrovoc/c_2018", "inorganic fertilizers", "http://aims.fao.org/aos/agrovoc/c_10795", "http://aims.fao.org/aos/agrovoc/c_34326", "fertility", "2. Zero hunger", "[SDV.SA] Life Sciences [q-bio]/Agricultural sciences", "http://aims.fao.org/aos/agrovoc/c_33949", "g\u00e9n\u00e9tique des populations", "04 agricultural and veterinary sciences", "agro\u00e9cosyst\u00e8me", "6. Clean water", "fertilit\u00e9 du sol", "PCR", "http://aims.fao.org/aos/agrovoc/c_34079", "polymerization", "community structure", "abonos inorg\u00e1nicos", "management", "570", "http://aims.fao.org/aos/agrovoc/c_7170", "http://aims.fao.org/aos/agrovoc/c_7172", "flore microbienne", "soil", "http://aims.fao.org/aos/agrovoc/c_36167", "micro-organisme du sol", "http://aims.fao.org/aos/agrovoc/c_10176", "organic fertilizers", "abonos org\u00e1nicos", "pratique culturale", "microorganismos del suelo", "suelo", "flore du sol", "P35 - Fertilit\u00e9 du sol", "P34 - Biologie du sol", "polimerizaci\u00f3n", "15. Life on land", "engrais min\u00e9ral", "http://aims.fao.org/aos/agrovoc/c_16367", "http://aims.fao.org/aos/agrovoc/c_4086", "0401 agriculture", " forestry", " and fisheries", "F04 - Fertilisation"]}, "links": [{"href": "https://doi.org/10.1007/s00374-011-0539-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biology%20and%20Fertility%20of%20Soils", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00374-011-0539-3", "name": "item", "description": "10.1007/s00374-011-0539-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00374-011-0539-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-01-19T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2020.107933", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:17:36Z", "type": "Journal Article", "created": "2020-08-10", "title": "Mycorrhizal association of common European tree species shapes biomass and metabolic activity of bacterial and fungal communities in soil", "description": "Open AccessRecent studies have revealed effects of various tree species on soil physical and chemical properties. However, effects of various tree species on composition and activity of soil microbiota and the relevant controls remain poorly understood. We evaluated the influence of tree species associated with two different mycorrhizal types, ectomycorrhiza (EcM) and arbuscular mycorrhiza (AM), on growth, biomass and metabolic activity of soil fungal and bacterial communities using common garden tree species experiments throughout Denmark. The soil microbial communities differed between six European tree species as well as between EcM (beech, lime, oak and spruce) and AM (ash and maple) tree species. The EcM tree species had higher fungal biomass, fungal growth and bacterial biomass, while AM species showed higher bacterial growth. The results indicated that microbial community composition and functioning differed between groups of tree species with distinct litter qualities that generate soil C/N ratio and soil pH differences. The mycorrhizal association only partly explained litter quality and soil microbial species differences since lime was more similar to AM tree species. In addition, our results indicated that tree species-mediated soil pH and C/N ratio were the most important variables shaping microbial communities with a positive effect on bacterial and a negative effect on fungal growth rates. The results suggest that tree species-mediated microbial community composition and activity may be important drivers of the different vertical soil C distribution previously observed in AM and EcM tree species.", "keywords": ["2. Zero hunger", "FOS: Biological sciences", "Populations and Evolution (q-bio.PE)", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Quantitative Biology - Populations and Evolution"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2020.107933"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2020.107933", "name": "item", "description": "10.1016/j.soilbio.2020.107933", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2020.107933"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-01T00:00:00Z"}}, {"id": "10.1111/j.1365-2389.2010.01313.x", "type": "Feature", "geometry": null, "properties": {"license": "Restricted", "updated": "2026-05-30T16:19:30Z", "type": "Journal Article", "created": "2010-11-16", "title": "Earthworm-Induced N Mineralization In Fertilized Grassland Increases Both N2o Emission And Crop-N Uptake", "description": "<p>Earthworms can increase plant nitrogen (N) availability by stimulating mineralization of organic matter. However, recent studies show that they can also cause elevated emission of the greenhouse gas nitrous oxide (N2O). It is unclear to what extent these two effects occur in fertilized grasslands, where earthworm densities are typically greatest. The aims of this study were therefore to (i) quantify the effects of earthworm activity on N uptake and N2O emissions in fertilized grasslands and (ii) link these effects to earthworm functional groups. In a 73\uffe2\uff80\uff90day factorial mesocosm experiment, combinations of Lumbricus rubellus (Lr, epigeic), Aporrectodea longa (Al, anecic) and Aporrectodea caliginosa (Ac, endogeic) individuals were introduced into columns with grass growing on a fertilized (250 kg N ha\uffe2\uff88\uff921) loamy soil. Introduction of Lr resulted in 50.8% (P &lt; 0.001) larger N2O emissions and 5.4% (P = 0.032) larger grass biomass. Grass\uffe2\uff80\uff90N uptake increased from 172 to 188 kg N ha\uffe2\uff88\uff921 in the presence of Lr (P &lt; 0.001), from 176 to 183 kg N ha\uffe2\uff88\uff921 in the presence of Ac (P = 0.001), and from 168 to 199 kg N ha\uffe2\uff88\uff921 when all three earthworm species were present (P = 0.006). Lr increased soil NH4+\uffe2\uff80\uff90N concentrations (P = 0.010), further indicating enhanced mineralization of N caused by earthworm activity. We conclude that the previously observed beneficial effect of earthworm presence on plant\uffe2\uff80\uff90N availability has a negative side\uffe2\uff80\uff90effect: increased emissions of the mineralized N as N2O.</p>", "keywords": ["forests", "2. Zero hunger", "agroecosystems", "habitat", "04 agricultural and veterinary sciences", "15. Life on land", "carbon-dioxide", "invasion", "populations", "fluxes", "soil-structure", "13. Climate action", "nitrous-oxide emission", "0401 agriculture", " forestry", " and fisheries", "organic-matter"]}, "links": [{"href": "https://doi.org/10.1111/j.1365-2389.2010.01313.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/European%20Journal%20of%20Soil%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1365-2389.2010.01313.x", "name": "item", "description": "10.1111/j.1365-2389.2010.01313.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1365-2389.2010.01313.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-11-16T00:00:00Z"}}, {"id": "10.1111/j.1475-2743.2003.tb00297.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:19:42Z", "type": "Journal Article", "created": "2010-08-05", "title": "Effects Of Organic Versus Conventional Arable Farming On Soil Structure And Organic Matter Dynamics In A Marine Loam In The Netherlands", "description": "<p>Abstract.  We compared the effects of conventional and organic arable farming on soil organic matter (SOM) content, soil structure, aggregate stability and C and N mineralization, which are considered important factors in defining sustainable land management. Within one soil series, three different farming systems were selected, including a conventional and an organic arable system and permanent pasture without tillage. The old pasture represents optimal conditions in terms of soil structure and organic matter inputs and is characterized by high earthworm activity. More than 70 years of different management has caused significant differences in soil properties. SOM content, mineralization, earthworm activity and water\uffe2\uff80\uff90stable aggregation decreased as a result of tillage and arable cropping when compared with pasture, but were significantly greater under organic farming than under conventional farming. Total SOM contents between 0 and 20 cm depth amounted to 15, 24 and 46 g kg\uffe2\uff88\uff921 for the conventional arable, organic arable and permanent pasture fields, respectively. Although less sensitive to slaking than the conventionally managed field, the soil under organic farming was susceptible to compaction when high pressures were exerted on the soil under wet conditions. The beneficial effects of organic farming are generally associated with soil biochemical properties, but soil physical aspects should also be considered. Depending on soil type and climate, organic farmers need to be careful not to destroy the soil structure, so that they can enjoy maximum advantage from their organic farming systems.</p>", "keywords": ["2. Zero hunger", "aggregation", "netherlands", "04 agricultural and veterinary sciences", "15. Life on land", "arable farming", "fertilizer", "loam soils", "populations", "6. Clean water", "land", "cultivation", "13. Climate action", "organic farming", "manure", "soil organic matter", "0401 agriculture", " forestry", " and fisheries", "compaction", "soil structure", "earthworm activity", "silt loam", "management"]}, "links": [{"href": "https://doi.org/10.1111/j.1475-2743.2003.tb00297.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Use%20and%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1475-2743.2003.tb00297.x", "name": "item", "description": "10.1111/j.1475-2743.2003.tb00297.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1475-2743.2003.tb00297.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2003-06-01T00:00:00Z"}}, {"id": "20.500.11850/706699", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:26:40Z", "type": "Journal Article", "created": "2024-11-11", "title": "Simulating                     Ips typographus                     L. outbreak dynamics and their influence on carbon balance estimates with ORCHIDEE r8627", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Abstract. New (a)biotic conditions resulting from climate change are expected to change disturbance dynamics, such as windthrow, forest fires, droughts, and insect outbreaks, and their interactions. These unprecedented natural disturbance dynamics might alter the capability of forest ecosystems to buffer atmospheric CO2 increases, potentially leading forests to transform from sinks into sources of CO2. This study aims to enhance the ORCHIDEE land surface model to study the impacts of climate change on the dynamics of the bark beetle, Ips typographus, and subsequent effects on forest functioning. The Ips typographus outbreak model is inspired by previous work from Temperli et al.\u00a0(2013) for the LandClim landscape model. The new implementation of this model in ORCHIDEE r8627 accounts for key differences between ORCHIDEE and LandClim: (1)\u00a0the coarser spatial resolution of ORCHIDEE; (2)\u00a0the higher temporal resolution of ORCHIDEE; and (3)\u00a0the pre-existing process representation of windthrow, drought, and forest structure in ORCHIDEE. Simulation experiments demonstrated the capability of ORCHIDEE to simulate a variety of post-disturbance forest dynamics observed in empirical studies. Through an array of simulation experiments across various climatic conditions and windthrow intensities, the model was tested for its sensitivity to climate, initial disturbance, and selected parameter values. The results of these tests indicated that with a single set of parameters, ORCHIDEE outputs spanned the range of observed dynamics. Additional tests highlighted the substantial impact of incorporating Ips typographus outbreaks on carbon dynamics. Notably, the study revealed that modeling abrupt mortality events as opposed to a continuous mortality framework provides new insights into the short-term carbon sequestration potential of forests under disturbance regimes by showing that the continuous mortality framework tends to overestimate the carbon sink capacity of forests in the 20- to 50-year range in ecosystems under high disturbance pressure compared to scenarios with abrupt mortality events. This model enhancement underscores the critical need to include disturbance dynamics in land surface models to refine predictions of forest carbon dynamics in a changing climate.</p></article>", "keywords": ["cycle du carbone", "[SDE] Environmental Sciences", "http://aims.fao.org/aos/agrovoc/c_24242", "P40 - M\u00e9t\u00e9orologie et climatologie", "mod\u00e8le de simulation", "Ips typographus", "http://aims.fao.org/aos/agrovoc/c_16411", "http://aims.fao.org/aos/agrovoc/c_2391", "http://aims.fao.org/aos/agrovoc/c_1666", "K70 - D\u00e9g\u00e2ts caus\u00e9s aux for\u00eats et leur protection", "http://aims.fao.org/aos/agrovoc/c_6111", "http://aims.fao.org/aos/agrovoc/c_4549f84e", "perturbation de l'\u00e9cosyst\u00e8me", "surveillance \u00e9pid\u00e9miologique", "mod\u00e9lisation", "s\u00e9cheresse", "changement climatique", "QE1-996.5", "http://aims.fao.org/aos/agrovoc/c_230ab86c", "U10 - Informatique", " math\u00e9matiques et statistiques", "Geology", "H10 - Ravageurs des plantes", "http://aims.fao.org/aos/agrovoc/c_331583", "s\u00e9questration du carbone", "dynamique des populations", "[SDE]Environmental Sciences", "http://aims.fao.org/aos/agrovoc/c_30153", "http://aims.fao.org/aos/agrovoc/c_17299"]}, "links": [{"href": "https://doi.org/20.500.11850/706699"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geoscientific%20Model%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "20.500.11850/706699", "name": "item", "description": "20.500.11850/706699", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/20.500.11850/706699"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-11-11T00:00:00Z"}}, {"id": "10.3389/fenvs.2018.00061", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:21:35Z", "type": "Journal Article", "created": "2018-07-10", "title": "Recognizing Patterns: Spatial Analysis of Observed Microbial Colonization on Root Surfaces", "description": "Root surfaces are major sites of interactions between plants and associated microorganisms. Here, plants and microbes communicate via signaling molecules, compete for nutrients, and release substrates that may have beneficial or harmful effects on each other. Whilst the body of knowledge on the abundance and diversity of microbial communities at root-soil interfaces is now substantial, information on their spatial distribution at the microscale is still scarce. In this study, a standardized method for recognizing and analyzing microbial cell distributions on root surfaces is presented. Fluorescence microscopy was combined with automated image analysis and spatial statistics to explore the distribution of bacterial colonization patterns on rhizoplanes of rice roots. To test and evaluate the presented approach, a gnotobiotic experiment was performed using a potential nitrogen-fixing bacterial strain in combination with roots of wetland rice. The automated analysis procedure resulted in reliable spatial data of bacterial cells colonizing the rhizoplane. Among all replicate roots, the analysis revealed an increasing density of bacterial cells from the root tip to the region of root cell maturation. Moreover, bacterial cells showed significant spatial clustering and tended to be located around plant root cell borders. The quantitative data suggest that the structure of the root surface plays a major role in bacterial colonization patterns. Possible adaptations of the presented approach for future studies are discussed along with potential pitfalls such as inaccurate imaging. Our results demonstrate that standardized recognition and statistical evaluation of microbial colonization on root surfaces holds the potential to increase our understanding of microbial associations with roots and of the underlying ecological interactions.", "keywords": ["[SDE] Environmental Sciences", "0301 basic medicine", "570", "bacterial colonization", "[SDV]Life Sciences [q-bio]", "CATALYZED REPORTER DEPOSITION", "microbial ecology;root surface;bacterial colonization;point process;spatial statistics;image analysis;pattern recognition;wetland rice", "ECOLOGY", "microbial ecology", "Image analysis", "spatial statistics", "Microbial ecology", "03 medical and health sciences", "image analysis", "Pattern recognition", "root surface", "GE1-350", "Point process", "Wetland rice", "point process", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "Spatial statistics", "IDENTIFICATION", "pattern recognition", "IN-SITU HYBRIDIZATION", "15. Life on land", "Bacterial colonization", "[SDV] Life Sciences [q-bio]", "SOIL", "Environmental sciences", "wetland rice", "Root surface", "[SDE]Environmental Sciences", "BACTERIA", "106022 Microbiology", "POPULATIONS", "COMMUNITIES"]}, "links": [{"href": "https://doi.org/10.3389/fenvs.2018.00061"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Environmental%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fenvs.2018.00061", "name": "item", "description": "10.3389/fenvs.2018.00061", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fenvs.2018.00061"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-07-10T00:00:00Z"}}, {"id": "10.3390/f11111186", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:21:48Z", "type": "Journal Article", "created": "2020-11-10", "title": "Counter-Intuitive Response to Water Limitation in a Southern European Provenance of Frangula alnus Mill. in a Common Garden Experiment", "description": "<p>Climate change will intensify drought periods during the growing season in Western Europe. We mimicked this prediction by withholding water in summer from young rooted cuttings of Frangula alnus Mill., a common shrub species, originating from different latitudes in Europe (Italy, Belgium and Sweden) and growing in a common garden environment in Belgium. We followed the responses to the drought up to two years after the treatment. Counter-intuitively, the Italian provenance displayed earlier symptoms and stronger effects of water limitation than the other two provenances. A putative higher transpiration in this provenance could be suggested based on a relative larger shoot growth, larger leaves and a higher stomatal density. After the post-drought re-watering, the droughted plants of the Italian provenance entered leaf senescence later than the control plants, likely as a compensation mechanism for the lost growing time. Bud burst in the first year after the drought treatment and leaf senescence in the next autumn were both advanced in the drought treated group when compared with the control plants. Bud burst in the second year after the drought treatment did not display any differentiation anymore between control and drought treated plants. Growth traits also displayed legacies of the water limitation. For example, the drought treated plants showed a lower number of reshoots upon pruning in the year after the drought treatment. Our results suggest that assisted migration from southern Europe to western Europe as a climate change adaptation strategy might not always follow the expected patterns.</p>", "keywords": ["Agriculture and Food Sciences", "0301 basic medicine", "plant architecture", "leaf senescence", "drought", "SESSILE OAK", "CARBOHYDRATE RESERVES", "ROBUR", "DROUGHT TOLERANCE", "03 medical and health sciences", "Biology", "TREE", "2. Zero hunger", "0303 health sciences", "CLIMATE-CHANGE", "general linear mixed models", "Forestry", "15. Life on land", "6. Clean water", "DIFFERENTIATION", "glossy buckthorn", "13. Climate action", "QUERCUS-PETRAEA", "post-drought recovery", "GROWTH", "POPULATIONS", "common garden", "bud burst"]}, "links": [{"href": "http://www.mdpi.com/1999-4907/11/11/1186/pdf"}, {"href": "https://doi.org/10.3390/f11111186"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Forests", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/f11111186", "name": "item", "description": "10.3390/f11111186", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/f11111186"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-10T00:00:00Z"}}, {"id": "3124284276", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:27:29Z", "type": "Journal Article", "created": "2021-01-23", "title": "Inconsistent effects of agricultural practices on soil fungal communities across 12 European long\u2010term experiments", "description": "Abstract<p>Cropping practices have a great potential to improve soil quality through changes in soil biota. Yet the effects of these soil\uffe2\uff80\uff90improving cropping systems on soil fungal communities are not well known. Here, we analysed soil fungal communities using standardized measurements in 12 long\uffe2\uff80\uff90term experiments and 20 agricultural treatments across Europe. We were interested in whether the same practices (i.e., tillage, fertilization, organic amendments and cover crops) applied across different sites have predictable and repeatable effects on soil fungal communities and guilds. The fungal communities were very variable across sites located in different soil types and climatic regions. The arbuscular mycorrhizal fungi (AMF) were the fungal guild with most unique species in individual sites, whereas plant pathogenic fungi were most shared between the sites. The fungal communities responded to the cropping practices differently in different sites and only fertilization showed a consistent effect on AMF and plant pathogenic fungi, whereas the responses to tillage, cover crops and organic amendments were site, soil and crop\uffe2\uff80\uff90species specific. We further show that the crop yield is negatively affected by cropping practices aimed at improving soil health. Yet, we show that these practices have the potential to change the fungal communities and that change in plant pathogenic fungi and in AMF is linked to the yield. We further link the soil fungal community and guilds to soil abiotic characteristics and reveal that especially Mn, K, Mg and pH affect the composition of fungi across sites. In summary, we show that fungal communities vary considerably between sites and that there are no clear directional responses in fungi or fungal guilds across sites to soil\uffe2\uff80\uff90improving cropping systems, but that the responses vary based on soil abiotic conditions, crop type and climatic conditions.</p>Highlights<p> <p>Soil fungi were analysed using standardized measurements in 12 long\uffe2\uff80\uff90term experiments and 20 agricultural treatments</p> <p>Fungal communities responded to the cropping practices differently at different sites</p> <p>Only reduced fertilization showed a consistent effect on AMF and plant pathogenic fungi, whereas the responses to tillage, cover crops and organic amendments were site specific.</p> <p>Fungal community structure varied significantly between sites, crops and climate conditions; therefore, more cross\uffe2\uff80\uff90site studies are needed in order to manage beneficial soil fungi in agricultural systems.</p> </p", "keywords": ["soil&#8208", "DIVERSITY", "0607 Plant Biology", "0703 Crop and Pasture Production", "Soil Science", "ARBUSCULAR MYCORRHIZAL FUNGI", "FERTILIZATION", "improving cropping systems", "soil fungi", "0503 Soil Sciences", "S Agriculture (General)", "CROPS", "METAANALYSIS", "TILLAGE", "2. Zero hunger", "Science & Technology", "long&#8208", "LAND-USE", "soil-improving cropping systems", "Agriculture", "Agronomy & Agriculture", "04 agricultural and veterinary sciences", "PERFORMANCE", "15. Life on land", "4106 Soil sciences", "long-term experiments", "organic amendments", "international", "tillage", "term experiments", "POPULATIONS", "0401 agriculture", " forestry", " and fisheries", "BIODIVERSITY", "Plan_S-Compliant_OA", "Life Sciences & Biomedicine"]}, "links": [{"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/ejss.13090"}, {"href": "https://rau.repository.guildhe.ac.uk/id/eprint/16456/1/ejss.13090.pdf"}, {"href": "https://doi.org/3124284276"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/European%20Journal%20of%20Soil%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3124284276", "name": "item", "description": "3124284276", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3124284276"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-18T00:00:00Z"}}, {"id": "10.5334/ijic.s3500", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:24:55Z", "type": "Journal Article", "created": "2019-08-09", "title": "Management of malaria, pneumonia and diarrhoea: addressing the needs of                         under-fives via culturally appropriate community \u2013 level strategy in Benue                         state, Nigeria", "description": "Although children below the age of five years in sub-Saharan Africa bear a high burden from malaria, pneumonia, and diarrhoea, few studies have reported on the influence of culturally competent care within the context of integrated community case management and its effectiveness in improving health outcomes for vulnerable populations. Using the archival method of research as well as data gleaned from interviews of 341 caregivers of children under the age of five years in four wards of a local government area in Benue state, Nigeria; we note that individual and community characteristics have the potential of increasing the utilisation of integrated community case management services across households accessing the service. This paper argues that child health services are likely to improve when interventions utilise the dynamics of individual and community factors in meeting the needs of families within systems of care. The paper adopts a conceptual framework that is sympathetic to health service utilisation and the policies that give rise to the problems associated with the use of integrated community case management of childhood services as seen in many countries in sub-Saharan Africa, including Nigeria. It suggests the use of targeted measures to strengthen utilisation of child health services at the community level.", "keywords": ["Medicine (General)", "R5-920", "integrated community case management", "malaria", "diarrhea", "1. No poverty", "pneumonia", "10. No inequality", "nigeria", "vulnerable populations", "3. Good health"]}, "links": [{"href": "https://doi.org/10.5334/ijic.s3500"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/International%20Journal%20of%20Integrated%20Care", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.5334/ijic.s3500", "name": "item", "description": "10.5334/ijic.s3500", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5334/ijic.s3500"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-08-08T00:00:00Z"}}, {"id": "11353/10.1033200", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:26:08Z", "type": "Journal Article", "created": "2018-07-10", "title": "Recognizing Patterns: Spatial Analysis of Observed Microbial Colonization on Root Surfaces", "description": "Root surfaces are major sites of interactions between plants and associated microorganisms. Here, plants and microbes communicate via signaling molecules, compete for nutrients, and release substrates that may have beneficial or harmful effects on each other. Whilst the body of knowledge on the abundance and diversity of microbial communities at root-soil interfaces is now substantial, information on their spatial distribution at the microscale is still scarce. In this study, a standardized method for recognizing and analyzing microbial cell distributions on root surfaces is presented. Fluorescence microscopy was combined with automated image analysis and spatial statistics to explore the distribution of bacterial colonization patterns on rhizoplanes of rice roots. To test and evaluate the presented approach, a gnotobiotic experiment was performed using a potential nitrogen-fixing bacterial strain in combination with roots of wetland rice. The automated analysis procedure resulted in reliable spatial data of bacterial cells colonizing the rhizoplane. Among all replicate roots, the analysis revealed an increasing density of bacterial cells from the root tip to the region of root cell maturation. Moreover, bacterial cells showed significant spatial clustering and tended to be located around plant root cell borders. The quantitative data suggest that the structure of the root surface plays a major role in bacterial colonization patterns. Possible adaptations of the presented approach for future studies are discussed along with potential pitfalls such as inaccurate imaging. Our results demonstrate that standardized recognition and statistical evaluation of microbial colonization on root surfaces holds the potential to increase our understanding of microbial associations with roots and of the underlying ecological interactions.", "keywords": ["[SDE] Environmental Sciences", "0301 basic medicine", "570", "bacterial colonization", "[SDV]Life Sciences [q-bio]", "CATALYZED REPORTER DEPOSITION", "microbial ecology;root surface;bacterial colonization;point process;spatial statistics;image analysis;pattern recognition;wetland rice", "ECOLOGY", "microbial ecology", "Image analysis", "spatial statistics", "Microbial ecology", "03 medical and health sciences", "image analysis", "Pattern recognition", "root surface", "GE1-350", "Point process", "Wetland rice", "point process", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "Spatial statistics", "IDENTIFICATION", "pattern recognition", "IN-SITU HYBRIDIZATION", "15. Life on land", "Bacterial colonization", "[SDV] Life Sciences [q-bio]", "SOIL", "Environmental sciences", "wetland rice", "Root surface", "[SDE]Environmental Sciences", "BACTERIA", "106022 Microbiology", "POPULATIONS", "COMMUNITIES"]}, "links": [{"href": "https://doi.org/11353/10.1033200"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Environmental%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "11353/10.1033200", "name": "item", "description": "11353/10.1033200", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/11353/10.1033200"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-07-10T00:00:00Z"}}, {"id": "2011.05846", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:26:44Z", "type": "Journal Article", "created": "2020-08-10", "title": "Mycorrhizal association of common European tree species shapes biomass and metabolic activity of bacterial and fungal communities in soil", "description": "Open AccessRecent studies have revealed effects of various tree species on soil physical and chemical properties. However, effects of various tree species on composition and activity of soil microbiota and the relevant controls remain poorly understood. We evaluated the influence of tree species associated with two different mycorrhizal types, ectomycorrhiza (EcM) and arbuscular mycorrhiza (AM), on growth, biomass and metabolic activity of soil fungal and bacterial communities using common garden tree species experiments throughout Denmark. The soil microbial communities differed between six European tree species as well as between EcM (beech, lime, oak and spruce) and AM (ash and maple) tree species. The EcM tree species had higher fungal biomass, fungal growth and bacterial biomass, while AM species showed higher bacterial growth. The results indicated that microbial community composition and functioning differed between groups of tree species with distinct litter qualities that generate soil C/N ratio and soil pH differences. The mycorrhizal association only partly explained litter quality and soil microbial species differences since lime was more similar to AM tree species. In addition, our results indicated that tree species-mediated soil pH and C/N ratio were the most important variables shaping microbial communities with a positive effect on bacterial and a negative effect on fungal growth rates. The results suggest that tree species-mediated microbial community composition and activity may be important drivers of the different vertical soil C distribution previously observed in AM and EcM tree species.", "keywords": ["2. Zero hunger", "FOS: Biological sciences", "Populations and Evolution (q-bio.PE)", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Quantitative Biology - Populations and Evolution"]}, "links": [{"href": "https://doi.org/2011.05846"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2011.05846", "name": "item", "description": "2011.05846", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2011.05846"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-01T00:00:00Z"}}, {"id": "3048333309", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-05-30T16:27:23Z", "type": "Journal Article", "created": "2020-08-10", "title": "Mycorrhizal association of common European tree species shapes biomass and metabolic activity of bacterial and fungal communities in soil", "description": "Open AccessRecent studies have revealed effects of various tree species on soil physical and chemical properties. However, effects of various tree species on composition and activity of soil microbiota and the relevant controls remain poorly understood. We evaluated the influence of tree species associated with two different mycorrhizal types, ectomycorrhiza (EcM) and arbuscular mycorrhiza (AM), on growth, biomass and metabolic activity of soil fungal and bacterial communities using common garden tree species experiments throughout Denmark. The soil microbial communities differed between six European tree species as well as between EcM (beech, lime, oak and spruce) and AM (ash and maple) tree species. The EcM tree species had higher fungal biomass, fungal growth and bacterial biomass, while AM species showed higher bacterial growth. The results indicated that microbial community composition and functioning differed between groups of tree species with distinct litter qualities that generate soil C/N ratio and soil pH differences. The mycorrhizal association only partly explained litter quality and soil microbial species differences since lime was more similar to AM tree species. In addition, our results indicated that tree species-mediated soil pH and C/N ratio were the most important variables shaping microbial communities with a positive effect on bacterial and a negative effect on fungal growth rates. The results suggest that tree species-mediated microbial community composition and activity may be important drivers of the different vertical soil C distribution previously observed in AM and EcM tree species.", "keywords": ["2. Zero hunger", "FOS: Biological sciences", "Populations and Evolution (q-bio.PE)", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "Quantitative Biology - Populations and Evolution"]}, "links": [{"href": "https://doi.org/3048333309"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3048333309", "name": "item", "description": "3048333309", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3048333309"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-01T00:00:00Z"}}, {"id": "39500340", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:27:52Z", "type": "Journal Article", "created": "2024-11-06", "title": "Population Genomics Reveals Demographic History and Climate Adaptation in Japanese Arabidopsis halleri", "description": "Abstract                <p>Climate oscillations in the Quaternary forced species to major latitudinal or altitudinal range shifts. It has been suggested that adaptation concomitant with range shifts plays key roles in species responses during climate oscillations, but the role of selection for local adaptation to climatic changes remains largely unexplored. Here, we investigated population structure, demographic history and signatures of climate-driven selection based on genome-wide polymorphism data of 141 Japanese Arabidopsis halleri individuals, with European ones as outgroups. Coalescent-based analyses suggested a genetic differentiation between Japanese subpopulations since the Last Glacial Period (LGP), which would have contributed to shaping the current pattern of population structure. Population demographic analysis revealed the population size fluctuations in the LGP, which were particularly prominent since the subpopulations started to diverge (\uffe2\uff88\uffbc50, 000 years ago). The ecological niche modeling predicted the geographic or distribution range shifts from southern coastal regions to northern coastal and mountainous areas, possibly in association with the population size fluctuations. Through genome-wide association analyses of bioclimatic variables and selection scans, we investigated whether climate-associated loci are enriched in the extreme tails of selection scans, and demonstrated the prevailing signatures of selection, particularly toward a warmer climate in southern subpopulations and a drier environment in northern subpopulations, which may have taken place during or after the LGP. Our study highlights the importance of integrating climate associations, selection scans and population demographic analyses for identifying genomic signatures of population-specific adaptation, which would also help us predict the evolutionary responses to future climate changes.</p", "keywords": ["Demographic history", "Arabidopsis halleri", "[SDV.EE.BIO] Life Sciences [q-bio]/Ecology", " environment/Bioclimatology", "Special Issue - Regular Paper", "Local adaptation", "[SDV.GEN.GPL] Life Sciences [q-bio]/Genetics/Plants genetics", "[SDV.BID.EVO] Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]", "[SDV.GEN.GPO] Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]", "Climate change", "Population genomics", "Glacial cycles"]}, "links": [{"href": "https://academic.oup.com/pcp/advance-article-pdf/doi/10.1093/pcp/pcae113/60430271/pcae113.pdf"}, {"href": "https://doi.org/39500340"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20And%20Cell%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "39500340", "name": "item", "description": "39500340", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/39500340"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-09-30T00:00:00Z"}}, {"id": "PMC12085087", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-30T16:29:49Z", "type": "Journal Article", "created": "2024-11-06", "title": "Population Genomics Reveals Demographic History and Climate Adaptation in Japanese Arabidopsis halleri", "description": "Abstract                <p>Climate oscillations in the Quaternary forced species to major latitudinal or altitudinal range shifts. It has been suggested that adaptation concomitant with range shifts plays key roles in species responses during climate oscillations, but the role of selection for local adaptation to climatic changes remains largely unexplored. Here, we investigated population structure, demographic history and signatures of climate-driven selection based on genome-wide polymorphism data of 141 Japanese Arabidopsis halleri individuals, with European ones as outgroups. Coalescent-based analyses suggested a genetic differentiation between Japanese subpopulations since the Last Glacial Period (LGP), which would have contributed to shaping the current pattern of population structure. Population demographic analysis revealed the population size fluctuations in the LGP, which were particularly prominent since the subpopulations started to diverge (\uffe2\uff88\uffbc50, 000 years ago). The ecological niche modeling predicted the geographic or distribution range shifts from southern coastal regions to northern coastal and mountainous areas, possibly in association with the population size fluctuations. Through genome-wide association analyses of bioclimatic variables and selection scans, we investigated whether climate-associated loci are enriched in the extreme tails of selection scans, and demonstrated the prevailing signatures of selection, particularly toward a warmer climate in southern subpopulations and a drier environment in northern subpopulations, which may have taken place during or after the LGP. Our study highlights the importance of integrating climate associations, selection scans and population demographic analyses for identifying genomic signatures of population-specific adaptation, which would also help us predict the evolutionary responses to future climate changes.</p", "keywords": ["Demographic history", "Arabidopsis halleri", "Local adaptation", "Climate", "Climate Change", "Acclimatization", "Arabidopsis", "Adaptation", " Physiological", "[SDV.EE.BIO] Life Sciences [q-bio]/Ecology", " environment/Bioclimatology", "Genetics", " Population", "Special Issue - Regular Paper", "Japan", "[SDV.GEN.GPL] Life Sciences [q-bio]/Genetics/Plants genetics", "[SDV.BID.EVO] Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]", "[SDV.GEN.GPO] Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]", "Climate change", "Selection", " Genetic", "Population genomics", "Glacial cycles", "Genome", " Plant", "Genome-Wide Association Study"]}, "links": [{"href": "https://academic.oup.com/pcp/advance-article-pdf/doi/10.1093/pcp/pcae113/60430271/pcae113.pdf"}, {"href": "https://doi.org/PMC12085087"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20And%20Cell%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "PMC12085087", "name": "item", "description": "PMC12085087", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PMC12085087"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-09-30T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=populations&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=populations&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=populations&", "hreflang": "en-US"}, {"rel": "last", "type": "application/geo+json", "title": "items (last)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=populations&offset=15", "hreflang": "en-US"}], "numberMatched": 15, "numberReturned": 15, "distributedFeatures": [], "timeStamp": "2026-05-31T02:54:00.270717Z"}