Legume roots can be symbiotically colonized by arbuscular mycorrhizal (AM) fungi and nitrogen-fixing bacteria. In Lotus japonicus, the latter occurs intracellularly by the cognate rhizobial partner Mesorhizobium loti or intercellularly with the Agrobacterium pusense strain IRBG74. Although these symbiotic programs show distinctive cellular and transcriptome signatures, some molecular components are shared. In this study, we demonstrate that 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 1 (DAHPS1), the first enzyme in the biosynthetic pathway of aromatic amino acids (AAAs), plays a critical role in root hair development and for AM and rhizobial symbioses in Lotus. Two homozygous DAHPS1 mutants (dahps1-1 and dahps1-2) showed drastic alterations in root hair morphology, associated with alterations in cell wall dynamics and a progressive disruption of the actin cytoskeleton. The altered root hair structure was prevented by pharmacological and genetic complementation. dahps1-1 and dahps1-2 showed significant reductions in rhizobial infection (intracellular and intercellular) and nodule organogenesis and a delay in AM colonization. RNAseq analysis of dahps1-2 roots suggested that these phenotypes are associated with downregulation of several cell wall\uffe2\uff80\uff93related genes, and with an attenuated signaling response. Interestingly, the dahps1 mutants showed no detectable pleiotropic effects, suggesting a more selective recruitment of this gene in certain biological processes. This work provides robust evidence linking AAA metabolism to root hair development and successful symbiotic associations.Soil salinity is a major contributor to crop yield losses. To improve our understanding of root responses to salinity, we developed and exploited a real-time salt-induced tilting assay. This assay follows root growth upon both gravitropic and salt challenges, revealing that root bending upon tilting is modulated by Na+ ions, but not by osmotic stress. Next, we measured this salt-specific response in 345 natural Arabidopsis (Arabidopsis thaliana) accessions and discovered a genetic locus, encoding the cell wall-modifying enzyme EXTENSIN ARABINOSE DEFICIENT TRANSFERASE (ExAD) that is associated with root bending in the presence of NaCl (hereafter salt). Extensins are a class of structural cell wall glycoproteins known as hydroxyproline (Hyp)-rich glycoproteins, which are posttranslationally modified by O-glycosylation, mostly involving Hyp-arabinosylation. We show that salt-induced ExAD-dependent Hyp-arabinosylation influences root bending responses and cell wall thickness. Roots of exad1 mutant seedlings, which lack Hyp-arabinosylation of extensin, displayed increased thickness of root epidermal cell walls and greater cell wall porosity. They also showed altered gravitropic root bending in salt conditions and a reduced salt-avoidance response. Our results suggest that extensin modification via Hyp-arabinosylation is a unique salt-specific cellular process required for the directional response of roots exposed to salinity.Increasing temperatures and a reduction in the frequency and severity of freezing events have been linked to species distribution shifts. Across the globe, mangrove ranges are expanding toward higher latitudes, likely due to diminishing frequency of freezing events associated with climate change. Continued warming will alter coastal wetland plant dynamics both above\uffe2\uff80\uff90 and belowground, potentially altering plant capacity to keep up with sea level rise. We conducted an in situ warming experiment, in northeast Florida, to determine how increased temperature (+2\uffc2\uffb0C) influences co\uffe2\uff80\uff90occurring mangrove and salt marsh plants. Warming was achieved using passive warming with three treatment levels (ambient, shade control, warmed). Avicennia germinans, the black mangrove, exhibited no differences in growth or height due to experimental warming, but displayed a warming\uffe2\uff80\uff90induced increase in leaf production (48%). Surprisingly, Distichlis spicata, the dominant salt marsh grass, increased in biomass (53% in 2013 and 70% in 2014), density (41%) and height (18%) with warming during summer months. Warming decreased plant root mass at depth and changed abundances of anaerobic bacterial taxa. Even while the poleward shift of mangroves is clearly controlled by the occurrences of severe freezes, chronic warming between these freeze events may slow the progression of mangrove dominance within ecotones.
", "keywords": ["0106 biological sciences", "Time Factors", "13. Climate action", "Climate Change", "Wetlands", "Florida", "Avicennia", "14. Life underwater", "15. Life on land", "Poaceae", "Plant Roots", "01 natural sciences", "6. Clean water"]}, "links": [{"href": "https://doi.org/10.1002/ecy.1539"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ecy.1539", "name": "item", "description": "10.1002/ecy.1539", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ecy.1539"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-11-01T00:00:00Z"}}, {"id": "10.1111/j.1461-0248.2010.01570.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:18:52Z", "type": "Journal Article", "created": "2010-12-22", "title": "Enhanced Root Exudation Induces Microbial Feedbacks To N Cycling In A Pine Forest Under Long-Term Co2 Fumigation", "description": "Ecology Letters (2011) 14: 187\uffe2\uff80\uff93194
AbstractThe degree to which rising atmospheric CO2 will be offset by carbon (C) sequestration in forests depends in part on the capacity of trees and soil microbes to make physiological adjustments that can alleviate resource limitation. Here, we show for the first time that mature trees exposed to CO2 enrichment increase the release of soluble C from roots to soil, and that such increases are coupled to the accelerated turnover of nitrogen (N) pools in the rhizosphere. Over the course of 3\uffe2\uff80\uff83years, we measured in situ rates of root exudation from 420 intact loblolly pine (Pinus taeda L.) roots. Trees fumigated with elevated CO2 (200 p.p.m.v. over background) increased exudation rates (\uffce\uffbcg\uffe2\uff80\uff83C\uffe2\uff80\uff83cm\uffe2\uff88\uff921\uffe2\uff80\uff83root\uffe2\uff80\uff83h\uffe2\uff88\uff921) by 55% during the primary growing season, leading to a 50% annual increase in dissolved organic inputs to fumigated forest soils. These increases in root\uffe2\uff80\uff90derived C were positively correlated with microbial release of extracellular enzymes involved in breakdown of organic N (R2\uffe2\uff80\uff83=\uffe2\uff80\uff830.66; P\uffe2\uff80\uff83=\uffe2\uff80\uff830.006) in the rhizosphere, indicating that exudation stimulated microbial activity and accelerated the rate of soil organic matter (SOM) turnover. In support of this conclusion, trees exposed to both elevated CO2 and N fertilization did not increase exudation rates and had reduced enzyme activities in the rhizosphere. Collectively, our results provide field\uffe2\uff80\uff90based empirical support suggesting that sustained growth responses of forests to elevated CO2 in low fertility soils are maintained by enhanced rates of microbial activity and N cycling fuelled by inputs of root\uffe2\uff80\uff90derived C. To the extent that increases in exudation also stimulate SOM decomposition, such changes may prevent soil C accumulation in forest ecosystems.
", "keywords": ["0106 biological sciences", "Nitrogen", "Plant Exudates", "Pinus taeda", "04 agricultural and veterinary sciences", "15. Life on land", "Carbon Dioxide", "01 natural sciences", "Plant Roots", "Carbon", "Trees", "Soil", "13. Climate action", "Rhizosphere", "North Carolina", "0401 agriculture", " forestry", " and fisheries", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1111/j.1461-0248.2010.01570.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecology%20Letters", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1461-0248.2010.01570.x", "name": "item", "description": "10.1111/j.1461-0248.2010.01570.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1461-0248.2010.01570.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-12-22T00:00:00Z"}}, {"id": "10.1016/j.jenvman.2013.12.024", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:16:27Z", "type": "Journal Article", "created": "2014-01-24", "title": "Effects Of Long-Term Grazing Disturbance On The Belowground Storage Of Organic Carbon In The Patagonian Monte, Argentina", "description": "The objective of this study was to analyze the effect of grazing disturbance on the amount and the spatial distribution (vertical and horizontal) of root biomass and soil organic carbon (SOC) in order to evaluate whether grazing alters the belowground storage of organic carbon (C) in arid rangelands of the Patagonian Monte. We selected three representative sites (3\u00a0ha each) with low, moderate and high grazing disturbance located far, mid-distance and near the watering point, respectively, in rangelands submitted to sheep grazing for more than 100 years. We assessed the canopy structure and identified the four most frequent plant patch types at each site. We selected four replications of each patch type and extracted a soil sample (0-30\u00a0cm depth) underneath the canopy and in the middle of the nearest inter-patch bare soil area in winter and summer. We assessed the root and soil dry mass and the respective organic C concentration in each sample and then we estimated the total belowground organic C storage at each site. Total plant and perennial grass cover were lower with high than low grazing disturbance while the reverse occurred with dwarf shrub cover. High grazing disturbance led to the increase in total root biomass in the whole soil profile of patch areas and in the upper soil of inter-patch areas. SOC was higher in patch than in inter-patch areas at all sites but at both areas was reduced with high grazing disturbance. This was probably the result of the low total plant cover and the low and recalcitrant contribution of above and below-ground plant litter to soils at sites with high grazing disturbance. Accordingly, these changes did not result in variations in the total belowground organic C storage. We concluded that high grazing disturbance did not affect the total belowground organic C storage but led to changes in the spatial patterning of this organic C storage (i.e shifting from soil to roots).", "keywords": ["0106 biological sciences", "2. Zero hunger", "Carbon Sequestration", "Sheep", "Arid Ecosystems", "Argentina", "Plant Development", "15. Life on land", "Deciduous Shrubs", "Poaceae", "Plant Roots", "01 natural sciences", "Carbon", "Plant Patches", "Soil Organic Carbon", "https://purl.org/becyt/ford/1.6", "Animals", "Biomass", "Herbivory", "https://purl.org/becyt/ford/1", "Root Biomass", "Dwarf Shrubs", "0105 earth and related environmental sciences"], "contacts": [{"organization": "Larreguy, Cecilia, Carrera, Anal\u00eda Lorena, Bertiller, Monica Beatriz,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.jenvman.2013.12.024"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Environmental%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jenvman.2013.12.024", "name": "item", "description": "10.1016/j.jenvman.2013.12.024", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jenvman.2013.12.024"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-02-01T00:00:00Z"}}, {"id": "10.1002/etc.5400", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:13:54Z", "type": "Journal Article", "created": "2022-06-09", "title": "Arbuscular Mycorrhizal Fungi and the Need for a Meaningful Regulatory Plant Protection Product Testing Strategy", "description": "AbstractArbuscular mycorrhizal fungi (AMF) perform key soil ecosystem services and, because of their symbiotic relationship with plant roots, may be exposed to the plant protection products (PPPs) applied to soils and crops. In 2017, the European Food Safety Authority (EFSA) released a scientific opinion addressing the state of the science on risk assessment of PPPs for in-soil organisms, recommending the inclusion of AMF ecotoxicological testing in the PPP regulatory process. However, it is not clear how this can be implemented in a tiered, robust, and ecologically relevant manner. Through a critical review of current literature, we examine the recommendations made within the EFSA report and the methodologies available to integrate AMF into the PPP risk assessment and provide perspective and commentary on their agronomic and ecological relevance. We conclude that considerable research questions remain to be addressed prior to the inclusion of AMF into the in-soil organism risk assessment, many of which stem from the unique challenges associated with including an obligate symbiont within the PPP risk assessment. Finally, we highlight critical knowledge gaps and the further research required to enable development of relevant, reliable, and robust scientific tests alongside pragmatic and scientifically sound guidance to ensure that any future risk-assessment paradigm is adequately protective of the ecosystem services it aims to preserve. Environ Toxicol Chem 2022;41:1808\uffe2\uff80\uff931823. \uffc2\uffa9 2022 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC.BACKGROUND: Drought is a major environmental stress limiting plant growth, productivity, and survival worldwide. Rootstocks are widely used to enhance plants resistance to drought stresses. This study determined influence of rootstock on drought responses in 1\uffe2\uff80\uff90year\uffe2\uff80\uff90old \uffe2\uff80\uff98Gale Gala\uffe2\uff80\uff99 apple trees grafted onto Malus sieversii or M. hupehensis.
RESULTS: Choice of rootstock resulted in differential response to drought stress. Specifically, M. sieversii caused less drought\uffe2\uff80\uff90induced reduction in relative growth rate, biomass accumulation, leaf area, leaf chlorophyll content, relative water content, photosynthesis rate and maximum chlorophyll fluorescence yield but greater increase in whole\uffe2\uff80\uff90plant water use efficiency compared to M. hupehensis. Secondly, compared with M. hupehensis, M. sieversii caused less drought\uffe2\uff80\uff90induced accumulation of reactive oxygen species but more increase in activities of antioxidant enzymes. In addition, xylem sap abscisic acid concentration was greater in trees grafted onto M. hupehensis than in those grafted onto M. sieversii under drought stress.
CONCLUSION: \uffe2\uff80\uff98Gale Gala\uffe2\uff80\uff99 trees' response to drought stress was associated with the rootstock's genotype onto which it was grafted. Trees with M. sieversii as rootstock are more drought resistant than trees with M. hupehensis as rootstock, which suggests that M. sieversii can be widely used as rootstock in arid and semi\uffe2\uff80\uff90arid regions. Copyright \uffc2\uffa9 2012 Society of Chemical Industry
", "keywords": ["Chlorophyll", "0301 basic medicine", "Plant Roots", "Antioxidants", "Fluorescence", "Trees", "03 medical and health sciences", "Species Specificity", "Stress", " Physiological", "Xylem", "Biomass", "Photosynthesis", "2. Zero hunger", "0402 animal and dairy science", "Water", "04 agricultural and veterinary sciences", "15. Life on land", "Adaptation", " Physiological", "6. Clean water", "Droughts", "Plant Leaves", "Malus", "0401 agriculture", " forestry", " and fisheries", "0405 other agricultural sciences", "Reactive Oxygen Species", "Abscisic Acid"], "contacts": [{"organization": "Binghua Liu, Fengwang Ma, Dong Liang, Yangjun Zou, Liang Cheng,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1002/jsfa.5647"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20the%20Science%20of%20Food%20and%20Agriculture", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/jsfa.5647", "name": "item", "description": "10.1002/jsfa.5647", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/jsfa.5647"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-03-19T00:00:00Z"}}, {"id": "10.1002/jsfa.8606", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:13:58Z", "type": "Journal Article", "created": "2017-07-31", "title": "How Are Arbuscular Mycorrhizal Associations Related To Maize Growth Performance During Short-Term Cover Crop Rotation?", "description": "AbstractBACKGROUNDBetter cover crop management options aiming to maximize the benefits of arbuscular mycorrhizal fungi (AMF) to subsequent crops are largely unknown. We investigated the impact of cover crop management methods on maize growth performance and assemblages of AMF colonizing maize roots in a field trial. The cover crop treatments comprised Italian ryegrass, wheat, brown mustard and fallow in rotation with maize.
RESULTSThe diversity of AMF communities among cover crops used for maize management was significantly influenced by the cover crop and time course. Cover crops did not affect grain yield and aboveground biomass of subsequent maize but affected early growth. A structural equation model indicated that the root colonization, AMF diversity and maize phosphorus uptake had direct strong positive effects on yield performance.
CONCLUSIONAMF variables and maize performance were related directly or indirectly to maize grain yield, whereas root colonization had a positive effect on maize performance. AMF may be an essential factor that determines the success of cover crop rotational systems. Encouraging AMF associations can potentially benefit cover cropping systems. Therefore, it is imperative to consider AMF associations and crop phenology when making management decisions. \uffc2\uffa9 2017 Society of Chemical Industry
", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "0402 animal and dairy science", "Agriculture", "Phosphorus", "04 agricultural and veterinary sciences", "15. Life on land", "Plant Roots", "Zea mays", "Crop Production", "03 medical and health sciences", "Mycorrhizae", "Lolium", "0405 other agricultural sciences", "Soil Microbiology", "Triticum", "Mustard Plant"]}, "links": [{"href": "https://doi.org/10.1002/jsfa.8606"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20the%20Science%20of%20Food%20and%20Agriculture", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/jsfa.8606", "name": "item", "description": "10.1002/jsfa.8606", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/jsfa.8606"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-09-11T00:00:00Z"}}, {"id": "10.1007/pl00008869", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:12Z", "type": "Journal Article", "created": "2006-04-10", "title": "Combined Effects Of Atmospheric Co2 And N Availability On The Belowground Carbon And Nitrogen Dynamics Of Aspen Mesocosms", "description": "It is uncertain whether elevated atmospheric CO2 will increase C storage in terrestrial ecosystems without concomitant increases in plant access to N. Elevated CO2 may alter microbial activities that regulate soil N availability by changing the amount or composition of organic substrates produced by roots. Our objective was to determine the potential for elevated CO2 to change N availability in an experimental plant-soil system by affecting the acquisition of root-derived C by soil microbes. We grew Populus tremuloides (trembling aspen) cuttings for 2 years under two levels of atmospheric CO2 (36.7 and 71.5 Pa) and at two levels of soil N (210 and 970 \u00b5g N g-1). Ambient and twice-ambient CO2 concentrations were applied using open-top chambers, and soil N availability was manipulated by mixing soils differing in organic N content. From June to October of the second growing season, we measured midday rates of soil respiration. In August, we pulse-labeled plants with 14CO2 and measured soil 14CO2 respiration and the 14C contents of plants, soils, and microorganisms after a 6-day chase period. In conjunction with the August radio-labeling and again in October, we used 15N pool dilution techniques to measure in situ rates of gross N mineralization, N immobilization by microbes, and plant N uptake. At both levels of soil N availability, elevated CO2 significantly increased whole-plant and root biomass, and marginally increased whole-plant N capital. Significant increases in soil respiration were closely linked to increases in root biomass under elevated CO2. CO2 enrichment had no significant effect on the allometric distribution of biomass or 14C among plant components, total 14C allocation belowground, or cumulative (6-day) 14CO2 soil respiration. Elevated CO2 significantly increased microbial 14C contents, indicating greater availability of microbial substrates derived from roots. The near doubling of microbial 14C contents at elevated CO2 was a relatively small quantitative change in the belowground C cycle of our experimental system, but represents an ecologically significant effect on the dynamics of microbial growth. Rates of plant N uptake during both 6-day periods in August and October were significantly greater at elevated CO2, and were closely related to fine-root biomass. Gross N mineralization was not affected by elevated CO2. Despite significantly greater rates of N immobilization under elevated CO2, standing pools of microbial N were not affected by elevated CO2, suggesting that N was cycling through microbes more rapidly. Our results contained elements of both positive and negative feedback hypotheses, and may be most relevant to young, aggrading ecosystems, where soil resources are not yet fully exploited by plant roots. If the turnover of microbial N increases, higher rates of N immobilization may not decrease N availability to plants under elevated CO2.", "keywords": ["0106 biological sciences", "root-: biomass-", "Ecology and Evolutionary Biology", "nitrogen-fixation", "Environmental-Sciences)", "01 natural sciences", "nitrogen", "biomass-", "nitrogen-cycle", "nitrogen-", "Microorganisms-", "carbon-14", "124-38-9: CARBON DIOXIDE", "C Cycle", "Spermatophytes-", "Spermatophyta-", "Key Words Atmospheric CO2", "Cellular and Developmental Biology", "Populus Tremuloides Michx", "2. Zero hunger", "carbon-dioxide: atmospheric-", "plant-nutrition", "Climatology- (Environmental-Sciences)", "Angiosperms-", "Angiospermae-", "Plants-", "Natural Resources and Environment", "04 agricultural and veterinary sciences", "global-climate-change", "microbe- (Microorganisms-)", "7727-37-9: NITROGEN", "chemical-composition", "carbon-sequestration", "mineral-uptake", "soil-biology", "Science", "Vascular-Plants", "poplars-", "respiration-", "carbon-dioxide-enrichment", "carbon-dioxide", "Populus-tremuloides [trembling-aspen] (Salicaceae-)", "carbon-cycle", "Health Sciences", "Salicaceae-: Dicotyledones-", "soil-respiration", "content", "Plantae-", "14762-75-5: CARBON-14", "mineralization-", "Molecular", "forest-soils", "15. Life on land", "Rhizodeposition", "soil-flora", "N Cycle", "13. Climate action", "cuttings-", "roots-", "Legacy", "Terrestrial-Ecology (Ecology-", "0401 agriculture", " forestry", " and fisheries", "Dicots-", "ecosystems-"], "contacts": [{"organization": "Mikan, Carl J., Zak, Donald R., Kubiske, Mark E., Pregitzer, Kurt S.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/pl00008869"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/pl00008869", "name": "item", "description": "10.1007/pl00008869", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/pl00008869"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2000-08-23T00:00:00Z"}}, {"id": "10.1007/s00248-008-9390-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:13Z", "type": "Journal Article", "created": "2008-04-28", "title": "Plant Responses To Drought Stress And Exogenous Aba Application Are Modulated Differently By Mycorrhization In Tomato And An Aba-Deficient Mutant (Sitiens)", "description": "The aims of the present study are to find out whether the effects of arbuscular mycorrhizal (AM) symbiosis on plant resistance to water deficit are mediated by the endogenous abscisic acid (ABA) content of the host plant and whether the exogenous ABA application modifies such effects. The ABA-deficient tomato mutant sitiens and its near-isogenic wild-type parental line were used. Plant development, physiology, and expression of plant genes expected to be modulated by AM symbiosis, drought, and ABA were studied. Results showed that only wild-type tomato plants responded positively to mycorrhizal inoculation, while AM symbiosis was not observed to have any effect on plant development in sitiens plants grown under well-watered conditions. The application of ABA to sitiens plants enhanced plant growth both under well-watered and drought stress conditions. In respect to sitiens plants subjected to drought stress, the addition of ABA had a cumulative effect in relation to that of inoculation with G. intraradices. Most of the genes analyzed in this study showed different regulation patterns in wild-type and sitiens plants, suggesting that their gene expression is modulated by the plant ABA phenotype. In the same way, the colonization of roots with the AM fungus G. intraradices differently regulated the expression of these genes in wild-type and in sitiens plants, which could explain the distinctive effect of the symbiosis on each plant ABA phenotype. This also suggests that the effects of the AM symbiosis on plant responses and resistance to water deficit are mediated by the plant ABA phenotype.", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "15. Life on land", "Adaptation", " Physiological", "Plant Roots", "6. Clean water", "Droughts", "03 medical and health sciences", "Solanum lycopersicum", "Mycorrhizae", "Mutation", "Symbiosis", "Abscisic Acid"]}, "links": [{"href": "https://doi.org/10.1007/s00248-008-9390-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00248-008-9390-y", "name": "item", "description": "10.1007/s00248-008-9390-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00248-008-9390-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-04-29T00:00:00Z"}}, {"id": "10.1007/s00425-024-04556-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:21Z", "type": "Journal Article", "created": "2024-10-23", "title": "Root exudation patterns of contrasting rice (Oryza sativa L.) lines in response to P limitation", "description": "Abstract Main conclusionRice exudation patterns changed in response to P deficiency. Higher exudation rates were associated with lower biomass production. Total carboxylate exudation rates mostly decreased under P-limiting conditions.
AbstractWithin the rhizosphere, root exudates are believed to play an important role in plant phosphorus (P) acquisition. This could be particularly beneficial in upland rice production where P is often limited. However, knowledge gaps remain on how P deficiency shapes quality and quantity of root exudation in upland rice genotypes. We therefore investigated growth, plant P uptake, and root exudation patterns of two rice genotypes differing in P efficiency in semi-hydroponics at two P levels (low P\uffe2\uff80\uff89=\uffe2\uff80\uff891\uffc2\uffa0\uffc2\uffb5M, adequate P\uffe2\uff80\uff89=\uffe2\uff80\uff89100\uffc2\uffa0\uffc2\uffb5M). Root exudates were collected hydroponically 28 and 40\uffc2\uffa0days after germination to analyze total carbon (C), carbohydrates, amino acids, phenolic compounds spectrophotometrically and carboxylates using a targeted LC\uffe2\uff80\uff93MS approach. Despite their reported role in P solubilization, we observed that carboxylate exudation rates per unit root surface area were not increased under P deficiency. In contrast, exudation rates of total C, carbohydrates, amino acids and phenolics were mostly enhanced in response to low P supply. Overall, higher exudation rates were associated with lower biomass production in the P-inefficient genotype Nerica4, whereas the larger root system with lower C investment (per unit root surface area) in root exudates of the P-efficient DJ123 allowed for better plant growth under P deficiency. Our results reveal new insights into genotype-specific resource allocation in rice under P-limiting conditions that warrant follow-up research including more genotypes.
", "keywords": ["Genotype", "Hydroponics", "carbohydrates ; phenolics ; amino acids ; carboxylates ; phosphorus", "Plant Exudates", "Rhizosphere", "Original Article", "Oryza", "Phosphorus", "Biomass", "Amino Acids", "Plant Roots", "Carbon"], "contacts": [{"organization": "Henning Schwalm, Christiana Staudinger, Mohammad-Reza Hajirezaei, Eva Mundschenk, Alireza Golestanifard, Maire Holz, Matthias Wissuwa, Eva Oburger,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s00425-024-04556-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Planta", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00425-024-04556-2", "name": "item", "description": "10.1007/s00425-024-04556-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00425-024-04556-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-10-23T00:00:00Z"}}, {"id": "10.1007/s00442-006-0381-8", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:22Z", "type": "Journal Article", "created": "2006-02-17", "description": "The aspen free-air CO2 and O3 enrichment (FACTS II-FACE) study in Rhinelander, Wisconsin, USA, is designed to understand the mechanisms by which young northern deciduous forest ecosystems respond to elevated atmospheric carbon dioxide (CO2) and elevated tropospheric ozone (O3) in a replicated, factorial, field experiment. Soil respiration is the second largest flux of carbon (C) in these ecosystems, and the objective of this study was to understand how soil respiration responded to the experimental treatments as these fast-growing stands of pure aspen and birch + aspen approached maximum leaf area. Rates of soil respiration were typically lowest in the elevated O3 treatment. Elevated CO2 significantly stimulated soil respiration (8-26%) compared to the control treatment in both community types over all three growing seasons. In years 6-7 of the experiment, the greatest rates of soil respiration occurred in the interaction treatment (CO2 + O3), and rates of soil respiration were 15-25% greater in this treatment than in the elevated CO2 treatment, depending on year and community type. Two of the treatments, elevated CO2 and elevated CO2 + O3, were fumigated with 13C-depleted CO2, and in these two treatments we used standard isotope mixing models to understand the proportions of new and old C in soil respiration. During the peak of the growing season, C fixed since the initiation of the experiment in 1998 (new C) accounted for 60-80% of total soil respiration. The isotope measurements independently confirmed that more new C was respired from the interaction treatment compared to the elevated CO2 treatment. A period of low soil moisture late in the 2003 growing season resulted in soil respiration with an isotopic signature 4-6 per thousand enriched in 13C compared to sample dates when the percentage soil moisture was higher. In 2004, an extended period of low soil moisture during August and early September, punctuated by a significant rainfall event, resulted in soil respiration that was temporarily 4-6 per thousand more depleted in 13C. Up to 50% of the Earth's forests will see elevated concentrations of both CO2 and O3 in the coming decades and these interacting atmospheric trace gases stimulated soil respiration in this study.", "keywords": ["0106 biological sciences", "Science", "Ecology and Evolutionary Biology", "Cell Respiration", "Acer", "Carbon Cycling", "Plant Roots", "01 natural sciences", "Trees", "Soil", "Ozone", "Stable Isotope", "Air Pollution", "Health Sciences", "\u03b4 13 C", "Global Change", "Cellular and Developmental Biology", "Betula", "Ecosystem", "Soil Microbiology", "Carbon Isotopes", "Atmosphere", "Natural Resources and Environment", "Molecular", "Carbon Dioxide", "15. Life on land", "Populus", "13. Climate action"]}, "links": [{"href": "https://doi.org/10.1007/s00442-006-0381-8"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-006-0381-8", "name": "item", "description": "10.1007/s00442-006-0381-8", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-006-0381-8"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-02-18T00:00:00Z"}}, {"id": "10.1007/s00442-006-0392-5", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:22Z", "type": "Journal Article", "created": "2006-03-17", "title": "Co2 And N-Fertilization Effects On Fine-Root Length, Production, And Mortality: A 4-Year Ponderosa Pine Study", "description": "We conducted a 4-year study of juvenile Pinus ponderosa fine root (< or =2 mm) responses to atmospheric CO2 and N-fertilization. Seedlings were grown in open-top chambers at three CO2 levels (ambient, ambient+175 mumol/mol, ambient+350 mumol/mol) and three N-fertilization levels (0, 10, 20 g m(-2) year(-1)). Length and width of individual roots were measured from minirhizotron video images bimonthly over 4 years starting when the seedlings were 1.5 years old. Neither CO2 nor N-fertilization treatments affected the seasonal patterns of root production or mortality. Yearly values of fine-root length standing crop (m m(-2)), production (m m(-2) year(-1)), and mortality (m m(-2) year(-1)) were consistently higher in elevated CO2 treatments throughout the study, except for mortality in the first year; however, the only statistically significant CO2 effects were in the fine-root length standing crop (m m(-2)) in the second and third years, and production and mortality (m m(-2) year(-1)) in the third year. Higher mortality (m m(-2) year(-1)) in elevated CO2 was due to greater standing crop rather than shorter life span, as fine roots lived longer in elevated CO2. No significant N effects were noted for annual cumulative production, cumulative mortality, or mean standing crop. N availability did not significantly affect responses of fine-root standing crop, production, or mortality to elevated CO2. Multi-year studies at all life stages of trees are important to characterize belowground responses to factors such as atmospheric CO2 and N-fertilization. This study showed the potential for juvenile ponderosa pine to increase fine-root C pools and C fluxes through root mortality in response to elevated CO2.", "keywords": ["0106 biological sciences", "2. Zero hunger", "Atmosphere", "Nitrogen", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "Plant Roots", "01 natural sciences", "Pinus ponderosa", "Seedlings", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Fertilizers"], "contacts": [{"organization": "Mark Johnson, J. Timothy Ball, Dale W. Johnson, Marjorie J. Storm, Donald L. Phillips, David T. Tingey,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s00442-006-0392-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-006-0392-5", "name": "item", "description": "10.1007/s00442-006-0392-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-006-0392-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-03-18T00:00:00Z"}}, {"id": "10.1007/s00442-006-0515-z", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:22Z", "type": "Journal Article", "created": "2006-08-23", "title": "Aboveground Productivity And Root-Shoot Allocation Differ Between Native And Introduced Grass Species", "description": "Plant species in grasslands are often separated into groups (C(4) and C(3) grasses, and forbs) with presumed links to ecosystem functioning. Each of these in turn can be separated into native and introduced (i.e., exotic) species. Although numerous studies have compared plant traits between the traditional groups of grasses and forbs, fewer have compared native versus introduced species. Introduced grass species, which were often introduced to prevent erosion or to improve grazing opportunities, have become common or even dominant species in grasslands. By virtue of their abundances, introduced species may alter ecosystems if they differ from natives in growth and allocation patterns. Introduced grasses were probably selected nonrandomly from the source population for forage (aboveground) productivity. Based on this expectation, aboveground production is predicted to be greater and root mass fraction to be smaller in introduced than native species. We compared root and shoot distribution and tissue quality between introduced and native C(4) grass species in the Blackland Prairie region of Central Texas, USA, and then compared differences to the more well-studied divergence between C(4) grasses and forbs. Comparisons were made in experimental monocultures planted with equal-sized transplants on a common soil type and at the same density. Aboveground productivity and C:N ratios were higher, on average, in native grasses than in native forbs, as expected. Native and introduced grasses had comparable amounts of shallow root biomass and tissue C:N ratios. However, aboveground productivity and total N were lower and deep root biomass and root mass fraction were greater in native than introduced grasses. These differences in average biomass distribution and N could be important to ecosystems in cases where native and introduced grasses have been exchanged. Our results indicate that native-introduced status may be important when interpreting species effects on grassland processes like productivity and plant N accumulation.", "keywords": ["580", "0106 biological sciences", "2. Zero hunger", "570", "Invasive species", "Nitrogen", "Exotic species", "Root biomass", "04 agricultural and veterinary sciences", "15. Life on land", "Poaceae", "Texas", "Plant Roots", "01 natural sciences", "Carbon", "Introduced species", "Grasslands", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Agricultural Science", "Tallgrass prairie", "Ecosystem", "Plant Shoots"]}, "links": [{"href": "https://doi.org/10.1007/s00442-006-0515-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-006-0515-z", "name": "item", "description": "10.1007/s00442-006-0515-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-006-0515-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2006-08-23T00:00:00Z"}}, {"id": "10.1007/s00442-003-1329-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:22Z", "type": "Journal Article", "created": "2003-11-21", "title": "Effects Of Earthworms And Organic Litter Distribution On Plant Performance And Aphid Reproduction", "description": "Human management practices and large detritivores such as earthworms incorporate plant litter into the soil, thereby forming a heterogeneous soil environment from which plant roots extract nutrients. In a greenhouse experiment we investigated effects of earthworms and spatial distribution of (15)N-labelled grass litter on plants of different functional groups [ Lolium perenne (grass), Plantago lanceolata (forb), Trifolium repens (legume)]. Earthworms enhanced shoot and root growth in L. perenne and P. lanceolata and N uptake from organic litter and soil in all plant species. Litter concentrated in a patch (compared with litter mixed homogeneously into the soil) increased shoot biomass and (15)N uptake from the litter in L. perenne and enhanced root proliferation in P. lanceolata when earthworms were present. Growth of clover (T. repens) was rather independent of the presence of earthworms and organic litter distribution: nevertheless, clover took up more nitrogen in the presence of earthworms and exploited more (15)N from the added litter than the other plant species. The magnitude of the effects of earthworms and organic litter distribution differed between the plant species, indicating different responses of plants with contrasting root morphology. Aphid (Myzus persicae) reproduction was reduced on P. lanceolata in the presence of earthworms. We suggest that earthworm activity may indirectly alter plant chemistry and hence defence mechanisms against herbivores.", "keywords": ["0106 biological sciences", "2. Zero hunger", "Nitrogen Radioisotopes", "Nitrogen", "Fabaceae", "04 agricultural and veterinary sciences", "Plants", "15. Life on land", "Poaceae", "Plant Roots", "01 natural sciences", "Aphids", "Animals", "0401 agriculture", " forestry", " and fisheries", "Oligochaeta", "Plantago", "Plant Shoots"]}, "links": [{"href": "https://doi.org/10.1007/s00442-003-1329-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-003-1329-x", "name": "item", "description": "10.1007/s00442-003-1329-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-003-1329-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2003-09-01T00:00:00Z"}}, {"id": "10.1007/s00442-004-1687-z", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:22Z", "type": "Journal Article", "created": "2004-08-18", "title": "Nutrient Uptake As A Contributing Explanation For Deep Rooting In Arid And Semi-Arid Ecosystems", "description": "Explanations for the occurrence of deep-rooted plants in arid and semi-arid ecosystems have traditionally emphasized the uptake of relatively deep soil water. However, recent hydrologic data from arid systems show that soil water potentials at depth fluctuate little over long time periods, suggesting this water may be rarely utilized or replenished. In this study, we examine the distributions of root biomass, soil moisture and nutrient contents to 10-m depths at five semi-arid and arid sites across southwestern USA. We couple these depth distributions with strontium (Sr) isotope data that show deep (>1 m) nutrient uptake is prevalent at four of the five sites. At all of the sites, the highest abundance of one or more of the measured nutrients occurred deep within the soil profile, particularly for P, Ca2+ and Mg2+. Phosphate contents were greater at depth than in the top meter of soil at three of five sites. At Jornada, for example, the 2-3 m depth increment had twice the extractable P as the top meter of soil, despite the highest concentrations of P occurring at the surface. The prevalence of such deep resource pools, and our evidence for cation uptake from them, suggest nutrient uptake as a complementary explanation for the occurrence of deep-rooted plants in arid and semi-arid systems. We propose that hydraulic redistribution of shallow surface water to deep soil layers by roots may be the mechanism through which deep soil nutrients are mobilized and taken up by plants.", "keywords": ["2. Zero hunger", "0106 biological sciences", "Fresh Water", "Humidity", "Phosphorus", "04 agricultural and veterinary sciences", "15. Life on land", "Plant Roots", "01 natural sciences", "Soil", "Strontium Isotopes", "13. Climate action", "Southwestern United States", "0401 agriculture", " forestry", " and fisheries", "Calcium", "Magnesium", "Biomass", "Ecosystem", "Plant Physiological Phenomena"]}, "links": [{"href": "https://doi.org/10.1007/s00442-004-1687-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-004-1687-z", "name": "item", "description": "10.1007/s00442-004-1687-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-004-1687-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-08-19T00:00:00Z"}}, {"id": "10.1007/s00442-005-0109-1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:22Z", "type": "Journal Article", "created": "2005-07-07", "title": "Plant N Capture From Pulses: Effects Of Pulse Size, Growth Rate, And Other Soil Resources", "description": "In arid ecosystems, the ability to rapidly capture nitrogen (N) from brief pulses is expected to influence plant growth, survival, and competitive ability. Theory and data suggest that N capture from pulses should depend on plant growth rate and availability of other limiting resources. Theory also predicts trade-offs in plant stress tolerance and ability to capture N from different size pulses. We injected K15NO3, to simulate small and large N pulses at three different times during the growing season into soil around the co-dominant Great Basin species Sarcobatus vermiculatus, Chrysothamnus nauseosus ssp. consimilis, and Distichlis spicata. Soils were amended with water and P in a partial factorial design. As predicted, all study species showed a comparable decline in N capture from large pulses through the season as growth rates slowed. Surprisingly, however, water and P availability differentially influenced the ability of these species to capture N from pulses. Distichlis N capture increased up to tenfold with water addition while Chrysothamnus N capture increased up to threefold with P addition. Sarcobatus N capture was not affected by water or P availability. Opposite to our prediction, Sarcobatus, the most stress tolerant species, captured less N from small pulses but more N from large pulses relative to the other species. These observations suggest that variation in N pulse timing and size can interact with variable soil water and P supply to determine how N is partitioned among co-existing Great Basin species.", "keywords": ["2. Zero hunger", "0106 biological sciences", "Nitrates", "Time Factors", "Nitrogen Isotopes", "Nitrogen", "Potassium Compounds", "Water", "Phosphorus", "15. Life on land", "Plant Roots", "01 natural sciences", "California", "Plant Leaves", "Magnoliopsida", "Soil", "Seasons", "Plant Shoots"], "contacts": [{"organization": "Jeremy J. James, James H. Richards,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s00442-005-0109-1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-005-0109-1", "name": "item", "description": "10.1007/s00442-005-0109-1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-005-0109-1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-07-08T00:00:00Z"}}, {"id": "10.1007/s00442-005-0191-4", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:22Z", "type": "Journal Article", "created": "2005-07-22", "title": "Fine Root Chemistry And Decomposition In Model Communities Of North-Temperate Tree Species Show Little Response To Elevated Atmospheric Co2 And Varying Soil Resource Availability", "description": "Rising atmospheric [CO2] has the potential to alter soil carbon (C) cycling by increasing the content of recalcitrant constituents in plant litter, thereby decreasing rates of decomposition. Because fine root turnover constitutes a large fraction of annual NPP, changes in fine root decomposition are especially important. These responses will likely be affected by soil resource availability and the life history characteristics of the dominant tree species. We evaluated the effects of elevated atmospheric [CO2] and soil resource availability on the production and chemistry, mycorrhizal colonization, and decomposition of fine roots in an early- and late-successional tree species that are economically and ecologically important in north temperate forests. Open-top chambers were used to expose young trembling aspen (Populus tremuloides) and sugar maple (Acer saccharum) trees to ambient (36 Pa) and elevated (56 Pa) atmospheric CO2. Soil resource availability was composed of two treatments that bracketed the range found in the Upper Lake States, USA. After 2.5 years of growth, sugar maple had greater fine root standing crop due to relatively greater allocation to fine roots (30% of total root biomass) relative to aspen (7% total root biomass). Relative to the low soil resources treatment, aspen fine root biomass increased 76% with increased soil resource availability, but only under elevated [CO2]. Sugar maple fine root biomass increased 26% with increased soil resource availability (relative to the low soil resources treatment), and showed little response to elevated [CO2]. Concentrations of N and soluble phenolics, and C/N ratio in roots were similar for the two species, but aspen had slightly higher lignin and lower condensed tannins contents compared to sugar maple. As predicted by source-sink models of carbon allocation, pooled constituents (C/N ratio, soluble phenolics) increased in response to increased relative carbon availability (elevated [CO2]/low soil resource availability), however, biosynthetically distinct compounds (lignin, starch, condensed tannins) did not always respond as predicted. We found that mycorrhizal colonization of fine roots was not strongly affected by atmospheric [CO2] or soil resource availability, as indicated by root ergosterol contents. Overall, absolute changes in root chemical composition in response to increases in C and soil resource availability were small and had no effect on soil fungal biomass or specific rates of fine root decomposition. We conclude that root contributions to soil carbon cycling will mainly be influenced by fine root production and turnover responses to rising atmospheric [CO2], rather than changes in substrate chemistry.", "keywords": ["0106 biological sciences", "Science", "Climate", "Ecology and Evolutionary Biology", "Plant Roots", "01 natural sciences", "Trees", "Sugar Maple", "Soil", "Ergosterol", "Health Sciences", "Carbon-based Secondary Compounds", "Biomass", "Cellular and Developmental Biology", "Ecosystem", "Soil Microbiology", "Atmosphere", "Fungi", "Natural Resources and Environment", "Molecular", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "Soil C Cycling", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Trembling Aspen"]}, "links": [{"href": "https://doi.org/10.1007/s00442-005-0191-4"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-005-0191-4", "name": "item", "description": "10.1007/s00442-005-0191-4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-005-0191-4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-07-23T00:00:00Z"}}, {"id": "10.1007/s00442-011-2092-z", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:23Z", "type": "Journal Article", "created": "2011-08-17", "title": "Absence Of Snow Cover Reduces Understory Plant Cover And Alters Plant Community Composition In Boreal Forests", "description": "Snow regimes affect biogeochemistry of boreal ecosystems and are altered by climate change. The effects on plant communities, however, are largely unexplored despite their influence on relevant processes. Here, the impact of snow cover on understory community composition and below-ground production in a boreal Picea abies forest was investigated using a long-term (8-year) snow cover manipulation experiment consisting of the treatments: snow removal, increased insulation (styrofoam pellets), and control. The snow removal treatment caused longer (118 vs. 57 days) and deeper soil frost (mean minimum temperature -5.5 vs. -2.2\u00b0C) at 10 cm soil depth in comparison to control. Understory species composition was strongly altered by the snow cover manipulations; vegetation cover declined by more than 50% in the snow removal treatment. In particular, the dominant dwarf shrub Vaccinium myrtillus (-82%) and the most abundant mosses Pleurozium schreberi (-74%) and Dicranum scoparium (-60%) declined strongly. The C:N ratio in V. myrtillus leaves and plant available N in the soil indicated no altered nitrogen nutrition. Fine-root biomass in summer, however, was negatively affected by the reduced snow cover (-50%). Observed effects are attributed to direct frost damage of roots and/ or shoots. Besides the obvious relevance of winter processes on plant ecology and distribution, we propose that shifts in the vegetation caused by frost damage may be an important driver of the reported alterations in biogeochemistry in response to altered snow cover. Understory plant performance clearly needs to be considered in the biogeochemistry of boreal systems in the face of climate change.", "keywords": ["0106 biological sciences", "Time Factors", "Nitrogen", "Climate Change", "Biodiversity", "15. Life on land", "Plant Roots", "01 natural sciences", "Carbon", "Trees", "13. Climate action", "Snow", "Freezing", "Seasons", "Picea", "Ecosystem", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1007/s00442-011-2092-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-011-2092-z", "name": "item", "description": "10.1007/s00442-011-2092-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-011-2092-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-08-18T00:00:00Z"}}, {"id": "10.1007/s00442-012-2576-5", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:23Z", "type": "Journal Article", "created": "2013-01-22", "title": "An Alpine Treeline In A Carbon Dioxide-Rich World: Synthesis Of A Nine-Year Free-Air Carbon Dioxide Enrichment Study", "description": "Open AccessOecologia, 171 (3)", "keywords": ["Carbon cycling", "0106 biological sciences", "0301 basic medicine", "Nitrogen", "Dwarf shrub", "Carbon Dioxide", "Plant Roots", "01 natural sciences", "Trees", "Soil", "03 medical and health sciences", "Carbon cycling; Dwarf shrub; Global change; Nitrogen; Treeline conifer", "Treeline conifer", "Global change", "Ecosystem", "Plant Physiological Phenomena", "Soil Microbiology", "Switzerland"]}, "links": [{"href": "https://doi.org/10.1007/s00442-012-2576-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00442-012-2576-5", "name": "item", "description": "10.1007/s00442-012-2576-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00442-012-2576-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-01-23T00:00:00Z"}}, {"id": "10.1007/s004420050375", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:24Z", "type": "Journal Article", "created": "2002-08-25", "title": "Response Of Soil Biota To Elevated Atmospheric Co 2 In Poplar Model Systems", "description": "We tested the hypotheses that increased belowground allocation of carbon by hybrid poplar saplings grown under elevated atmospheric CO2 would increase mass or turnover of soil biota in bulk but not in rhizosphere soil. Hybrid poplar saplings (Populus\u00d7euramericana cv. Eugenei) were grown for 5 months in open-bottom root boxes at the University of Michigan Biological Station in northern, lower Michigan. The experimental design was a randomized-block design with factorial combinations of high or low soil N and ambient (34 Pa) or elevated (69 Pa) CO2 in five blocks. Rhizosphere microbial biomass carbon was 1.7 times greater in high-than in low-N soil, and did not respond to elevated CO2. The density of protozoa did not respond to soil N but increased marginally (P\u2009<\u20090.06) under elevated CO2. Only in high-N soil did arbuscular mycorrhizal fungi and microarthropods respond to CO2. In high-N soil, arbuscular mycorrhizal root mass was twice as great, and extramatrical hyphae were 11% longer in elevated than in ambient CO2 treatments. Microarthropod density and activity were determined in situ using minirhizotrons. Microarthropod density did not change in response to elevated CO2, but in high-N soil, microarthropods were more strongly associated with fine roots under elevated than ambient treatments. Overall, in contrast to the hypotheses, the strongest response to elevated atmospheric CO2 was in the rhizosphere where (1) unchanged microbial biomass and greater numbers of protozoa (P\u2009<\u20090.06) suggested faster bacterial turnover, (2) arbuscular mycorrhizal root length increased, and (3) the number of microarthropods observed on fine roots rose.", "keywords": ["0106 biological sciences", "2. Zero hunger", "Arbuscular Mycorrhizas", "Microarthropods", "Science", "Ecology and Evolutionary Biology", "Natural Resources and Environment", "Molecular", "04 agricultural and veterinary sciences", "15. Life on land", "Roots", "01 natural sciences", "Microbial Biomass", "Legacy", "Health Sciences", "0401 agriculture", " forestry", " and fisheries", "Key Words Atmospheric CO2", "Cellular and Developmental Biology"], "contacts": [{"organization": "Treonis, Amy, Lussenhop, John, Teeri, James A., Curtis, Peter S., Vogel, Christoph S.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s004420050375"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s004420050375", "name": "item", "description": "10.1007/s004420050375", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s004420050375"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1998-01-09T00:00:00Z"}}, {"id": "10.1007/s004420100656", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:24Z", "type": "Journal Article", "created": "2003-02-13", "title": "Fine-Root Biomass And Fluxes Of Soil Carbon In Young Stands Of Paper Birch And Trembling Aspen As Affected By Elevated Atmospheric Co2 And Tropospheric O3", "description": "Rising atmospheric CO2 may stimulate future forest productivity, possibly increasing carbon storage in terrestrial ecosystems, but how tropospheric ozone will modify this response is unknown. Because of the importance of fine roots to the belowground C cycle, we monitored fine-root biomass and associated C fluxes in regenerating stands of trembling aspen, and mixed stands of trembling aspen and paper birch at FACTS-II, the Aspen FACE project in Rhinelander, Wisconsin. Free-air CO2 enrichment (FACE) was used to elevate concentrations of CO2 (average enrichment concentration 535\u00a0\u00b5l l-1) and O3 (53\u00a0nl l-1) in developing forest stands in 1998 and 1999. Soil respiration, soil pCO2, and dissolved organic carbon in soil solution (DOC) were monitored biweekly. Soil respiration was measured with a portable infrared gas analyzer. Soil pCO2 and DOC samples were collected from soil gas wells and tension lysimeters, respectively, at depths of 15, 30, and 125\u00a0cm. Fine-root biomass averaged 263\u00a0g m-2 in control plots and increased 96% under elevated CO2. The increased root biomass was accompanied by a 39% increase in soil respiration and a 27% increase in soil pCO2. Both soil respiration and pCO2 exhibited a strong seasonal signal, which was positively correlated with soil temperature. DOC concentrations in soil solution averaged ~12\u00a0mg l-1 in surface horizons, declined with depth, and were little affected by the treatments. A simplified belowground C budget for the site indicated that native soil organic matter still dominated the system, and that soil respiration was by far the largest flux. Ozone decreased the above responses to elevated CO2, but effects were rarely statistically significant. We conclude that regenerating stands of northern hardwoods have the potential for substantially greater C input to soil due to greater fine-root production under elevated CO2. Greater fine-root biomass will be accompanied by greater soil C efflux as soil respiration, but leaching losses of C will probably be unaffected.", "keywords": ["0106 biological sciences", "Ecology and Evolutionary Biology", "Aspen-FACE-project", "root-", "USA-", "pollutants-", "Environmental-Sciences)", "tropospheric-ozone", "forest-productivity", "01 natural sciences", "biomass-", "northern-forests", "124-38-9: CARBON DIOXIDE", "soil-carbon-flux", "terrestrial-ecosystems", "populus-tremuloides", "Cellular and Developmental Biology", "soil-carbon", "7440-44-0: CARBON", "carbon-", "fine-root", "Bioenergetics- (Biochemistry-and-Molecular-Biophysics)", "Natural Resources and Environment", "04 agricultural and veterinary sciences", "GLOBAL-ECOLOGY", "North-America", "Nearctic-region)", "Rhinelander- (Wisconsin-", "carbon-sequestration", "atmosphere-", "biomass-production", "dissolved-organic-carbon [DOC-]", "Science", "respiration-", "carbon-dioxide-enrichment", "forest-plantations", "carbon-dioxide", "carbon-storage", "fine-root-biomass", "belowground-biomass", "United-States-Wisconsin-Rhinelander", "carbon-cycle", "Health Sciences", "ozone-", "soil-respiration", "air-pollution", "global-change", "atmospheric-carbon-dioxide", "biomass", "Molecular", "15. Life on land", "ozone", "13. Climate action", "roots-", "Legacy", "Terrestrial-Ecology (Ecology-", "free-air-carbon-dioxide-enrichment [FREE-]: experimental-method", "0401 agriculture", " forestry", " and fisheries", "Northern Forests Global Change Carbon Sequestration Soil Respiration Dissolved Organic Carbon Soil PCO2"]}, "links": [{"href": "https://doi.org/10.1007/s004420100656"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Oecologia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s004420100656", "name": "item", "description": "10.1007/s004420100656", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s004420100656"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2001-07-01T00:00:00Z"}}, {"id": "10.1007/s00572-015-0655-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:24Z", "type": "Journal Article", "created": "2015-07-25", "title": "The Ectomycorrhizal Community Of Conifer Stands On Peat Soils 12 Years After Fertilization With Wood Ash", "description": "We studied long-term effects of fertilization with wood ash on biomass, vitality and mycorrhizal colonization of fine roots in three conifer forest stands growing in Vacciniosa turf. mel. (V), Myrtillosa turf. mel. (M) and Myrtillosa turf. mel./Caricoso-phragmitosa (MC) forest types on peat soils. Fertilization trials amounting 5 kg/m(2) of wood ash were established 12 years prior to this study. A total of 63 soil samples with roots were collected and analysed. Ectomycorrhizal (ECM) fungi in roots were identified by morphotyping and sequencing of the fungal internal transcribed spacer (ITS) region. In all forest types, fine root biomass was higher in fertilized plots than in control plots. In M forest type, proportion of living fine roots was greater in fertilized plots than in control plots, while in V and MC, the result was opposite. Fifty ECM species were identified, of which eight were common to both fertilized and control plots. Species richness and Shannon diversity index were generally higher in fertilized plots than in control plots. The most common species in fertilized plots were Amphinema byssoides (17.8%) and Tuber cf. anniae (12.2%), while in control plots, it was Tylospora asterophora (18.5%) and Lactarius tabidus (20.3%). Our results showed that forest fertilization with wood ash has long-lasting effect on diversity and composition of ECM fungal communities.", "keywords": ["0106 biological sciences", "570", "forest fertilization", "m\u00e4nty", "Molecular Sequence Data", "organic soils", "fine roots", "Plant Roots", "01 natural sciences", "630", "mets\u00e4nlannoitus", "Mycorrhizae", "ectomycorrhizae", "DNA", " Ribosomal Spacer", "Muut aihealueet", "DNA", " Fungal", "2. Zero hunger", "Picea abies", "Pinus sylvestris", "Sequence Analysis", " DNA", "04 agricultural and veterinary sciences", "15. Life on land", "Biota", "hienojuuret", "kuusi", "Tracheophyta", "eloper\u00e4iset maat", "0401 agriculture", " forestry", " and fisheries", "ektomykorritsa"]}, "links": [{"href": "https://doi.org/10.1007/s00572-015-0655-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Mycorrhiza", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00572-015-0655-2", "name": "item", "description": "10.1007/s00572-015-0655-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00572-015-0655-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-07-26T00:00:00Z"}}, {"id": "10.1007/s10533-010-9496-4", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:35Z", "type": "Journal Article", "created": "2010-07-11", "title": "Effects Of Nitrogen Additions On Above- And Belowground Carbon Dynamics In Two Tropical Forests", "description": "Anthropogenic nitrogen (N) deposition is increasing rapidly in tropical regions, adding N to ecosystems that often have high background N availability. Tropical forests play an important role in the global carbon (C) cycle, yet the effects of N deposition on C cycling in these ecosystems are poorly understood. We used a field N-fertilization experiment in lower and upper elevation tropical rain forests in Puerto Rico to explore the responses of above- and belowground C pools to N addition. As expected, tree stem growth and litterfall productivity did not respond to N fertilization in either of these N-rich forests, indicating a lack of N limitation to net primary productivity (NPP). In contrast, soil C concentrations increased significantly with N fertilization in both forests, leading to larger C stocks in fertilized plots. However, different soil C pools responded to N fertilization differently. Labile (low density) soil C fractions and live fine roots declined with fertilization, while mineral-associated soil C increased in both forests. Decreased soil CO2 fluxes in fertilized plots were correlated with smaller labile soil C pools in the lower elevation forest (R2\u00a0=\u00a00.65, p\u00a0<\u00a00.05), and with lower live fine root biomass in the upper elevation forest (R2\u00a0=\u00a00.90, p\u00a0<\u00a00.05). Our results indicate that soil C storage is sensitive to N deposition in tropical forests, even where plant productivity is not N-limited. The mineral-associated soil C pool has the potential to respond relatively quickly to N additions, and can drive increases in bulk soil C stocks in tropical forests.", "keywords": ["58 Geosciences Aboveground Biomass", "15. Life on land", "Roots", "Aboveground Biomass", "Environmental sciences", "Soil Respiration", "Dissolved Organic Carbon", "Soil Density Fractions", "Environmental Chemistry", "Nutrient Limitation", "54 Environmental Sciences", "Geosciences", "Earth-Surface Processes", "Water Science and Technology"]}, "links": [{"href": "https://escholarship.org/content/qt7ww245cp/qt7ww245cp.pdf"}, {"href": "https://doi.org/10.1007/s10533-010-9496-4"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biogeochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s10533-010-9496-4", "name": "item", "description": "10.1007/s10533-010-9496-4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s10533-010-9496-4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-07-11T00:00:00Z"}}, {"id": "10.1007/s10661-017-5947-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:38Z", "type": "Journal Article", "created": "2017-04-14", "description": "Understanding the responses of vegetation characteristics and soil properties to grazing disturbance is useful for grassland ecosystem restoration and management in semiarid areas. Here, we examined the effects of long-term grazing on vegetation characteristics, soil properties, and their relationships across four grassland types (meadow, Stipa steppe, scattered tree grassland, and sandy grassland) in the Horqin grassland, northern China. Our results showed that grazing greatly decreased vegetation cover, aboveground plant biomass, and root biomass in all four grassland types. Plant cover and aboveground biomass of perennials were decreased by grazing in all four grasslands, whereas grazing increased the cover and biomass of shrubs in Stipa steppe and of annuals in scattered tree grassland. Grazing decreased soil carbon and nitrogen content in Stipa steppe and scattered tree grassland, whereas soil bulk density showed the opposite trend. Long-term grazing significantly decreased soil pH and electrical conductivity (EC) in annual-dominated sandy grassland. Soil moisture in fenced and grazed grasslands decreased in the following order of meadow, Stipa steppe, scattered tree grassland, and sandy grassland. Correlation analyses showed that aboveground plant biomass was significantly positively associated with the soil carbon and nitrogen content in grazed and fenced grasslands. Species richness was significantly positively correlated with soil bulk density, moisture, EC, and pH in fenced grasslands, but no relationship was detected in grazed grasslands. These results suggest that the soil carbon and nitrogen content significantly maintains ecosystem function in both fenced and grazed grasslands. However, grazing may eliminate the association of species richness with soil properties in semiarid grasslands.", "keywords": ["0106 biological sciences", "2. Zero hunger", "China", "Nitrogen", "04 agricultural and veterinary sciences", "Plants", "15. Life on land", "Grassland", "Plant Roots", "01 natural sciences", "Carbon", "Soil", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Herbivory", "Ecosystem", "Environmental Monitoring"]}, "links": [{"href": "https://doi.org/10.1007/s10661-017-5947-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Monitoring%20and%20Assessment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s10661-017-5947-x", "name": "item", "description": "10.1007/s10661-017-5947-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s10661-017-5947-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-04-14T00:00:00Z"}}, {"id": "10.1016/j.scitotenv.2019.01.095", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:16:42Z", "type": "Journal Article", "created": "2019-01-10", "title": "The Cover Crop Determines The Amf Community Composition In Soil And In Roots Of Maize After A Ten-Year Continuous Crop Rotation", "description": "Intensive agricultural practices are responsible for soil biological degradation. By stimulating indigenous arbuscular mycorrhizal fungi (AMF), cover cropping enhances soil health and promotes agroecosystem sustainability. Still, the legacy effects of cover crops (CCs) and the major factors driving the AM fungal community are not well known; neither is the influence of the specific CC. This work describes a field experiment established in Central Spain to test the effect of replacing winter fallow by barley (Hordeum vulgare L.) or vetch (Vicia sativa L.) during the intercropping of maize (Zea mays L.). We examined the community composition of the AMF in the roots and rhizosphere soil associated with the subsequent cash crop after 10\u202fyears of cover cropping, using Illumina technology. The multivariate analysis showed that the AMF communities under the barley treatment differed significantly from those under fallow, whereas no legacy effect of the vetch CC was detected. Soil organic carbon, electrical conductivity, pH, Ca and microbial biomass carbon were identified as major factors shaping soil AMF communities. Specific AMF taxa were found to play a role in plant uptake of P, Fe, Zn, Mn, and Cd, which may shed light on the functionality of these taxa. In our conditions, the use of barley as a winter CC appears to be an appropriate choice with respect to promotion of AMF populations and biological activity in agricultural soils with intercropping systems. However, more research on CC species and their legacy effect on the microbial community composition and functionality are needed to guide decisions in knowledge-based agriculture.", "keywords": ["Crops", " Agricultural", "2. Zero hunger", "Diversity", "Cover cropping", "Grass", "Arbuscular mycorrhizal fungi", "Agriculture", "Hordeum", "04 agricultural and veterinary sciences", "15. Life on land", "Plant Roots", "Zea mays", "Crop Production", "Legume", "Spain", "Long-term experiment", "Mycorrhizae", "Long-term experiments", "Rhizosphere", "0401 agriculture", " forestry", " and fisheries", "Illumina technology", "Mediterranean climate", "Soil Microbiology", "Mycobiome"]}, "links": [{"href": "https://doi.org/10.1016/j.scitotenv.2019.01.095"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.scitotenv.2019.01.095", "name": "item", "description": "10.1016/j.scitotenv.2019.01.095", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.scitotenv.2019.01.095"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-04-01T00:00:00Z"}}, {"id": "10.1007/s11104-008-9853-4", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:46Z", "type": "Journal Article", "created": "2008-12-19", "title": "White Lupin Leads To Increased Maize Yield Through A Soil Fertility-Independent Mechanism: A New Candidate For Fighting Striga Hermonthica Infestation?", "description": "Open AccessISSN:0032-079X", "keywords": ["2. Zero hunger", "Lupinus albus; Desmodium uncinatum; Striga hermonthica; Zea mays; Soil fertility; Cluster roots", "04 agricultural and veterinary sciences", "580 Plants (Botany)", "15. Life on land", "Soil fertility", "Zea mays", "Cluster roots", "10126 Department of Plant and Microbial Biology", "Lupinus albus", "Desmodium uncinatum", "1110 Plant Science", "Striga hermonthica", "0401 agriculture", " forestry", " and fisheries", "1111 Soil Science"]}, "links": [{"href": "https://doi.org/10.1007/s11104-008-9853-4"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-008-9853-4", "name": "item", "description": "10.1007/s11104-008-9853-4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-008-9853-4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-12-20T00:00:00Z"}}, {"id": "10.1007/s11104-013-1733-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:50Z", "type": "Journal Article", "created": "2013-05-31", "title": "Soil Organic Carbon And Root Distribution In A Temperate Arable Agroforestry System", "description": "To determine, for arable land in a temperate area, the effect of tree establishment and intercropping treatments, on the distribution of roots and soil organic carbon to a depth of 1.5\u00a0m. A poplar (Populus sp.) silvoarable agroforestry experiment including arable controls was established on arable land in lowland England in 1992. The trees were intercropped with an arable rotation or bare fallow for the first 11\u00a0years, thereafter grass was allowed to establish. Coarse and fine root distributions (to depths of up to 1.5\u00a0m and up to 5\u00a0m from the trees) were measured in 1996, 2003, and 2011. The amount and type of soil carbon to 1.5\u00a0m depth was also measured in 2011. The trees, initially surrounded by arable crops rather than fallow, had a deeper coarse root distribution with less lateral expansion. In 2011, the combined length of tree and understorey vegetation roots was greater in the agroforestry treatments than the control, at depths below 0.9\u00a0m. Between 0 and 1.5\u00a0m depth, the fine root carbon in the agroforestry treatment (2.56\u00a0t\u00a0ha-1) was 79% greater than that in the control (1.43\u00a0t\u00a0ha\u22121). Although the soil organic carbon in the top 0.6\u00a0m under the trees (161\u00a0t\u00a0C\u00a0ha\u22121) was greater than in the control (142\u00a0t\u00a0C ha\u22121), a tendency for smaller soil carbon levels beneath the trees at lower depths, meant that there was no overall tree effect when a 1.5\u00a0m soil depth was considered. From a limited sample, there was no tree effect on the proportion of recalcitrant soil organic carbon. The observed decline in soil carbon beneath the trees at soil depths greater than 60\u00a0cm, if observed elsewhere, has important implication for assessments of the role of afforestation and agroforestry in sequestering carbon.", "keywords": ["Carbon sequestration", "2. Zero hunger", "Soil", "Carbon fractions", "Populus", "550", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "Agroforestry", "15. Life on land", "Roots", "Carbon"]}, "links": [{"href": "https://doi.org/10.1007/s11104-013-1733-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-013-1733-x", "name": "item", "description": "10.1007/s11104-013-1733-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-013-1733-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-06-01T00:00:00Z"}}, {"id": "10.1007/s11104-019-04308-2", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:53Z", "type": "Journal Article", "created": "2019-12-06", "title": "Significance of root hairs at the field scale \u2013 modelling root water and phosphorus uptake under different field conditions", "description": "Abstract Background and aimsRoot hairs play a significant role in phosphorus (P) extraction at the pore scale. However, their importance at the field scale remains poorly understood.
MethodsThis study uses a continuum model to explore the impact of root hairs on the large-scale uptake of P, comparing root hair influence under different agricultural scenarios. High vs low and constant vs decaying P concentrations down the soil profile are considered, along with early vs late precipitation scenarios.
ResultsSimulation results suggest root hairs accounted for 50% of total P uptake by plants. Furthermore, a delayed initiation time of precipitation potentially limits the P uptake rate by over 50% depending on the growth period. Despite the large differences in the uptake rate, changes in the soil P concentration in the domain due to root solute uptake remains marginal when considering a single growth season. However, over the duration of 6\uffc2\uffa0years, simulation results showed that noticeable differences arise over time.
ConclusionRoot hairs are critical to P capture, with uptake efficiency potentially enhanced by coordinating irrigation with P application during earlier growth stages of crops.
", "keywords": ["/dk/atira/pure/subjectarea/asjc/1100/1111", "0106 biological sciences", "330", "550", "EP/M020355/1", "ERC 646809 DIMR", "QH301 Biology", "/dk/atira/pure/subjectarea/asjc/1100/1110", "Soil Science", "A. B", "Field", "610", "Plant Science", "01 natural sciences", "NERC NE/L00237/1", "QH301", "Soil", "Plant roots", "Root hairs", "BBSRC SARIC BB/P004180/", "2. Zero hunger", "BBSRC SARISA BB/L025620/1. S. D.", "Mathematical modelling", "Natural Environment Research Council (NERC)", "name=Soil Science", "Water", "Phosphorus", "Regular Article", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water", "Engineering and Physical Sciences Research Council (EPSRC)", "Rhizosphere", "Biotechnology and Biological Sciences Research Council (BBSRC)", "0401 agriculture", " forestry", " and fisheries", "name=Plant Science", "European Research Council"]}, "links": [{"href": "https://eprints.soton.ac.uk/434043/1/Manuscript_No_Tracked_Changes.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1007/s11104-019-04308-2.pdf"}, {"href": "https://doi.org/10.1007/s11104-019-04308-2"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-019-04308-2", "name": "item", "description": "10.1007/s11104-019-04308-2", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-019-04308-2"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-12-06T00:00:00Z"}}, {"id": "10.1007/s11356-013-2321-6", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:14:57Z", "type": "Journal Article", "created": "2013-12-02", "title": "Interactive Effects Of Different Inorganic As And Se Species On Their Uptake And Translocation By Rice (Oryza Sativa L.) Seedlings", "description": "There is a lack of information on the interactive relationship of absorption and transformation between two inorganic arsenic (As) species and two inorganic selenium (Se) species in rice grown under hydroponic condition. Interactive effects of inorganic As (As(III)) and (As(V)) and Se (Se(IV)and Se(VI)) species on their uptake, accumulation, and translocation in rice (Oryza sativa L.) seedlings were investigated in hydroponic culture. The results clearly showed the interactive effects of inorganic As and Se on their uptake by rice. The presence of Se reduced the sum of As species in the rice shoots regardless of Se speciation. If Se is present as Se(IV), then is it is accompanied by a corresponding increase of the sum of As species, but if Se is present as Se(VI), then there is no change in the sum of As species in rice roots. These effects are observed regardless of initial As speciation. When the rice plants are exposed to Se(IV), the presence of As increases the sum of Se species in the roots, and decreases the sum of Se species in the corresponding shoots. This effect is more pronounced for As(III) than for As(V). There is no effect on Se during exposure to Se(VI). Co-existence of As also increased SeMet in rice roots.", "keywords": ["0106 biological sciences", "Oryza", "04 agricultural and veterinary sciences", "Plant Roots", "01 natural sciences", "Arsenic", "Selenium", "Hydroponics", "Seedlings", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Drug Interactions", "Environmental Pollutants", "Plant Shoots"], "contacts": [{"organization": "Yi-Zong Huang, Gui-Lan Duan, Yunxia Liu, Ying Hu, Guo-Xin Sun,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/s11356-013-2321-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20and%20Pollution%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11356-013-2321-6", "name": "item", "description": "10.1007/s11356-013-2321-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11356-013-2321-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-12-03T00:00:00Z"}}, {"id": "10.1007/s11538-017-0350-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:01Z", "type": "Journal Article", "created": "2017-10-13", "title": "An Explicit Structural Model of Root Hair and Soil Interactions Parameterised by Synchrotron X-ray Computed Tomography", "description": "The rhizosphere is a zone of fundamental importance for understanding the dynamics of nutrient acquisition by plant roots. The canonical difficulty of experimentally investigating the rhizosphere led long ago to the adoption of mathematical models, the most sophisticated of which now incorporate explicit representations of root hairs and rhizosphere soil. Mathematical upscaling regimes, such as homogenisation, offer the possibility of incorporating into larger-scale models the important mechanistic processes occurring at the rhizosphere scale. However, we lack concrete descriptions of all the features required to fully parameterise models at the rhizosphere scale. By combining synchrotron X-ray computed tomography (SRXCT) and a novel root growth assay, we derive a three-dimensional description of rhizosphere soil structure suitable for use in multi-scale modelling frameworks. We describe an approach to mitigate sub-optimal root hair detection via structural root hair growth modelling. The growth model is explicitly parameterised with SRXCT data and simulates three-dimensional root hair ideotypes in silico, which are suitable for both ideotypic analysis and parameterisation of 3D geometry in mathematical models. The study considers different hypothetical conditions governing root hair interactions with soil matrices, with their respective effects on hair morphology being compared between idealised and image-derived soil/root geometries. The studies in idealised geometries suggest that packing arrangement of soil affects hair tortuosity more than the particle diameter. Results in field-derived soil suggest that hair access to poorly mobile nutrients is particularly sensitive to the physical interaction between the growing hairs and the phase of the soil in which soil water is present (i.e. the hydrated textural phase). The general trends in fluid-coincident hair length with distance from the root, and their dependence on hair/soil interaction mechanisms, are conserved across Cartesian and cylindrical geometries.", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Mathematical Concepts", "15. Life on land", "Models", " Biological", "Plant Roots", "Soil", "03 medical and health sciences", "Imaging", " Three-Dimensional", "Rhizosphere", "Original Article", "Computer Simulation", "Tomography", " X-Ray Computed", "Synchrotrons"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11538-017-0350-x.pdf"}, {"href": "https://doi.org/10.1007/s11538-017-0350-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bulletin%20of%20Mathematical%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11538-017-0350-x", "name": "item", "description": "10.1007/s11538-017-0350-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11538-017-0350-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-10-13T00:00:00Z"}}, {"id": "10.1016/j.agrformet.2025.110749", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:21Z", "type": "Journal Article", "created": "2025-07-19", "title": "Contribution of aboveground and belowground biomass of Robinia pseudoacacia trees to total plant carbon stocks in a young agroforestry system", "description": "Allocation to aboveground and belowground compartments of tree biomass in Mediterranean agroforestry systems (AFS) is poorly documented, especially for young trees. This work aimed at (i) characterizing the effects of land use (Agroforestry, AF vs. Tree Plantation, TP) on 5-year-old black locust tree growth, tree biomass allocation, and tree C stocks at plot scale, and (ii) assessing the effect of land use on total carbon stocks (AF vs. TP vs. Crop Monoculture). Allometric equations were built for upscaling tree biomass at the plot scale. Biomass of understory vegetation and crops were estimated at the plot scale in the three land uses. Tree diameter was 19 % higher in the AF than in TP, likely due to different light microclimate, while tree height did not vary significantly between land uses. Tree biomass allocation to aboveground and belowground compartments (70 % and 30 % of total tree biomass, respectively) did not vary between land uses. Higher efficiency in building tree carbon stock was shown in agroforestry than in tree plantation per area unit. Trees accounted for 39 % and 66 % of total carbon stocks in biomass in AF and TP, respectively. Understory vegetation accounted for 8 % and 34 % of total carbon stocks in biomass in AF and TP, respectively. Land equivalent ratio values, which involved tree, crop and understory vegetation carbon stocks, did not yet indicate a synergetic effect on accumulation of plant carbon compared to sole crop or tree plantations. This study provides new reference values of carbon stocks in biomass in a young AFS.", "keywords": ["http://aims.fao.org/aos/agrovoc/c_330982", "plant", "Triticum turgidum", "utilisation des terres", "syst\u00e8mes agroforestiers", "Biomass allocation", "http://aims.fao.org/aos/agrovoc/c_16111", "enracinement", "http://aims.fao.org/aos/agrovoc/c_3081", "biomasse", "http://aims.fao.org/aos/agrovoc/c_1666", "http://aims.fao.org/aos/agrovoc/c_1301", "Agroforestry", "agroforesterie", "Black locust", "changement climatique", "Allometry", "biomasse souterraine", "http://aims.fao.org/aos/agrovoc/c_363a2055", "Robinia", "http://aims.fao.org/aos/agrovoc/c_331583", "croissance", "Roots", "http://aims.fao.org/aos/agrovoc/c_207", "[SDV] Life Sciences [q-bio]", "s\u00e9questration du carbone", "Carbon stocks", "http://aims.fao.org/aos/agrovoc/c_926", "http://aims.fao.org/aos/agrovoc/c_3394", "Biomass production", "Robinia pseudoacacia", "http://aims.fao.org/aos/agrovoc/c_6624", "http://aims.fao.org/aos/agrovoc/c_6625", "http://aims.fao.org/aos/agrovoc/c_4182", "http://aims.fao.org/aos/agrovoc/c_7958", "http://aims.fao.org/aos/agrovoc/c_6649", "France", "carbone"]}, "links": [{"href": "https://doi.org/10.1016/j.agrformet.2025.110749"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Agricultural%20and%20Forest%20Meteorology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.agrformet.2025.110749", "name": "item", "description": "10.1016/j.agrformet.2025.110749", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.agrformet.2025.110749"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-10-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2003.10.005", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:39Z", "type": "Journal Article", "created": "2003-11-17", "title": "Heavy Metal Accumulation By Nicotiana Glauca Graham In A Solid Waste Disposal Site", "description": "Nicotiana glauca Graham, is the only perennial shrub growing in a solid waste contaminated site in the Negev desert of Israel. The concentration of heavy metals (Cu, Fe, Mn, Zn, Ni, Cd and Pb) in the upper soil layer was significantly higher (p<0.01) than in non-contaminated desert soil. In root and shoot of N. glauca, growing in the site, the concentration of Cu, Zn and Fe was significantly higher (p<0.05) than in plants of a non-contaminated site. In a controlled experiment, the concentrations of Zn and Cu in root of plants grown, in a mixture of contaminated and non-contaminated soil (1:1) was 9.5 and 4.7 higher than that of plants grown in non-contaminated soil, respectively. While Zn was accumulated in shoot of plants grown in contaminated soil (531 mgkg(-1)) in significantly higher concentration than in plants grown in non-contaminated soil (56 mgkg(-1)), no significant differences were found in Cu accumulation. Growth of N. glauca was inhibited on contaminated soil, but no other obvious stress symptoms were apparent. Therefore, long term experiments under controlled conditions are planned to study the mechanism of heavy metal tolerance and accumulation in N. glauca.", "keywords": ["Nicotiana", "0106 biological sciences", "Soil", "Metals", " Heavy", "Biomass", "Israel", "Plant Roots", "01 natural sciences", "6. Clean water", "Refuse Disposal", "0105 earth and related environmental sciences", "12. Responsible consumption"], "contacts": [{"organization": "Oz Barazani, P. Sathiyamoorthy, Uttam Manandhar, Raya Vulkan, Avi Golan-Goldhirsh,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2003.10.005"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2003.10.005", "name": "item", "description": "10.1016/j.chemosphere.2003.10.005", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2003.10.005"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2004-02-01T00:00:00Z"}}, {"id": "10.1016/j.apsoil.2010.09.006", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:28Z", "type": "Journal Article", "created": "2010-10-15", "title": "Is There A Linear Relationship Between Priming Effect Intensity And The Amount Of Organic Matter Input?", "description": "C-labeling abstract Inputs of fresh organic matter (FOM) are known to affect the rate of soil organic matter (SOM) mineral- ization. SOM mineralization can be accelerated or decelerated by FOM inputs. This phenomenon, known as the Priming effect (PE), may largely influence the carbon (C) storage capacity of soils. However, the link between PE intensity and FOM inputs is not clearly understood. Indeed, almost all the studies about PE used only one FOM amount which is generally largely below the amount of FOM observed in field conditions. In our study, we incubated soil amended with three levels of 13 C-labeled straw as FOM and a control without FOM amendment for 80 days. The three levels used were in the same range as the natural FOM inputs observed on our sampling site. Various levels of mineral nitrogen were added within each level of straw supply so that the final input C:N ratios ranged among 44, 30 and 20. CO2 and i 13 C-CO2 were measured during the experiment allowing us to distinguish the FOM respired CO2 from the SOM respired CO2. We observed that PE intensity did not increase linearly with increasing FOM additions. Moreover, decreasing the input C:N ratios did not systematically affect PE intensity probably because of shifts in the microbial characteristics such as their C:N ratio or their assimilation yields. These results suggest that PE is a saturating function of FOM inputs that is only weakly influenced by initial N availability. Our results may be explained (i) by the existence of a limited SOM pool subject to PE (ii) or by the occurrence of two simultaneous and antagonistic mechanisms: an increase of the total active microbial biomass accel- erating SOM mineralization (i.e. a positive PE) and a preferential substrate utilization of FOM over SOM decreasing SOM mineralization (i.e. a negative PE). Finally, irrespective of the mechanisms implied, our results suggest that the importance of positive PE relatively to the amount of FOM may decrease when FOM inputs increase, which is favorable to carbon sequestration in soils. Indeed, in the case of the lower amount of FOM, the PE corresponded to 6.25% of the total amount of CO2 mineralized at the end of the experiment while, for the higher amount of FOM, the PE corresponded to 5% of the total amount of CO2 mineralized at the end of the experiment.", "keywords": ["DECOMPOSITION", "2. Zero hunger", "330", "[SDV]Life Sciences [q-bio]", "Soil organic matter mineralization", "Straw", "(13)C-labeling", "04 agricultural and veterinary sciences", "15. Life on land", "630", "6. Clean water", "MECHANISMS", "GLUCOSE", "CARBON", "SOIL", "NITROGEN", "MODEL", "[SDV] Life Sciences [q-bio]", "Carbon storage", "SUBSTRATE", "0401 agriculture", " forestry", " and fisheries", "Priming effect", "MINERALIZATION", "ROOTS"]}, "links": [{"href": "https://doi.org/10.1016/j.apsoil.2010.09.006"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20Soil%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.apsoil.2010.09.006", "name": "item", "description": "10.1016/j.apsoil.2010.09.006", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.apsoil.2010.09.006"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2010-11-01T00:00:00Z"}}, {"id": "10.1016/j.atmosenv.2006.05.008", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:31Z", "type": "Journal Article", "created": "2007-01-27", "title": "Seasonal Soil And Leaf Co2 Exchange Rates In A Mediterranean Holm Oak Forest And Their Responses To Drought Conditions", "description": "Open AccessPeer reviewed", "keywords": ["0106 biological sciences", "2. Zero hunger", "Foliar net photosynthetic rates", "Drought", "Soil VOC exchange", "Microorganisms", "04 agricultural and veterinary sciences", "15. Life on land", "Soil CO2 flux", "Roots", "01 natural sciences", "6. Clean water", "Mediterranean holm oak forest", "13. Climate action", "Soil CO2 exchange", "Monoterpenes", "Climate change", "0401 agriculture", " forestry", " and fisheries", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.atmosenv.2006.05.008"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Atmospheric%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.atmosenv.2006.05.008", "name": "item", "description": "10.1016/j.atmosenv.2006.05.008", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.atmosenv.2006.05.008"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-04-01T00:00:00Z"}}, {"id": "10.1016/j.cell.2021.04.024", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:39Z", "type": "Journal Article", "created": "2021-05-18", "title": "Innovation, conservation, and repurposing of gene function in root cell type development", "description": "Plant species have evolved myriads of solutions, including complex cell type development and regulation, to adapt to dynamic environments. To understand this cellular diversity, we profiled tomato root cell type translatomes. Using xylem differentiation in tomato, examples of functional innovation, repurposing, and conservation of transcription factors are described, relative to the model plant Arabidopsis. Repurposing and innovation of genes are further observed within an exodermis regulatory network and illustrate its function. Comparative translatome analyses of rice, tomato, and Arabidopsis cell populations suggest increased expression conservation of root meristems compared with other homologous populations. In addition, the functions of constitutively expressed genes are more conserved than those of cell type/tissue-enriched genes. These observations suggest that higher order properties of cell type and pan-cell type regulation are evolutionarily conserved between plants and animals.", "keywords": ["root development", "translatomes", "General Biochemistry", "Genetics and Molecular Biology", "Green Fluorescent Proteins", "Meristem", "Arabidopsis", "cell types; evolution; exodermis; gene regulation; rice; root development; tomato; translatomes; xylem", "tomato", "xylem", "Genes", " Plant", "Plant Roots", "Inventions", "Solanum lycopersicum", "Species Specificity", "Gene Expression Regulation", " Plant", "Xylem", "evolution", "Gene Regulatory Networks", "Promoter Regions", " Genetic", "Plant Proteins", "2. Zero hunger", "exodermis", "rice", "15. Life on land", "Protein Biosynthesis", "cell types", "gene regulation", "Transcription Factors"]}, "links": [{"href": "https://www.research.unipd.it/bitstream/11577/3392826/2/PIIS0092867421005043.pdf"}, {"href": "https://doi.org/10.1016/j.cell.2021.04.024"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Cell", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.cell.2021.04.024", "name": "item", "description": "10.1016/j.cell.2021.04.024", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.cell.2021.04.024"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-06-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2009.01.042", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:40Z", "type": "Journal Article", "created": "2009-02-16", "title": "Effects Of Earthworms On Metal Uptake Of Heavy Metals From Polluted Mine Soils By Different Crop Plants", "description": "A pot experiment was conducted in order to assess the effect of the earthworm Eisenia fetida on the uptake of Pb, Zn, Cd and Cu from soils polluted by mining activities using maize (Zea mays) and barley (Hordeum vulgare). Results from single and sequential extractions showed that the soil chemical partitioning of heavy metals was significantly changed by E. fetida, leading to a higher concentration of metals in the non-residual fractions of the soil. Earthworm activities significantly increased shoot biomass (65% for maize and 73% for barley) and root metal concentration for all the metals under study in both maize and barley. The total accumulation rate values for Cd, Cu, Pb and Zn were significantly higher in the presence of E. fetida for both crop plants. Those latter effects led to an increase in Zn extraction yields of up to 3.7-fold and 2.3-fold for barley and maize, respectively.", "keywords": ["2. Zero hunger", "Hordeum", "04 agricultural and veterinary sciences", "Chemical Fractionation", "Plant Roots", "Zea mays", "01 natural sciences", "Mining", "Biodegradation", " Environmental", "13. Climate action", "Metals", " Heavy", "Animals", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Oligochaeta", "Plant Shoots", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2009.01.042"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2009.01.042", "name": "item", "description": "10.1016/j.chemosphere.2009.01.042", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2009.01.042"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-05-01T00:00:00Z"}}, {"id": "10.1016/j.chemosphere.2006.12.071", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:40Z", "type": "Journal Article", "created": "2007-02-21", "title": "The Copper Tolerance Strategies And The Role Of Antioxidative Enzymes In Three Plant Species Grown On Copper Mine", "description": "This study was undertaken to identify the strategies and the status of antioxidant enzyme activities involved in three plant species tolerance against Cu-toxicity in copper mine. The following methods were used for evaluations in three wild type species; Datura stramonium, Malva sylvestris and Chenopodium ambrosioides. The level of chlorophyll and the activities of superoxide dismutase (SOD), glutathione peroxidase (GPX) and catalase (CAT) by spectrometry, malondialdehyde (MDA) and dityrosine by HPLC and the levels of Cu in tissues and soils by atomic absorption spectrometry (AAS). Analysis showed that total and available copper were at toxic levels for plants growing on contaminated soil (zone 1). However, there were not any visual and conspicuous symptoms of Cu toxicity in plant species. Among three species, excess copper was transferred only into the D. stramonium and C. ambrosioides tissues. The C. ambrosioides accumulated Cu in roots and then in leaves, in which the leaves chloroplasts stored Cu around two times of vacuoles. In D. stramonium most of Cu was accumulated in leaves in which the storage rate in vacuoles and chloroplasts were 42% and 8%, respectively. In zone 1, the chlorophyll levels increased significantly in leaves of C. ambrosioides with respect to the same plant growing on uncontaminated soil (zone 2). There was insignificant decrease in chlorophyll content of D. stramonium leaves, collected from zone 1 with respect to zone 2. The D. stramonium and C. ambrosioides in zone 1, both revealed significant increase in their tissues antioxidant enzyme activities in comparison with the same samples of zone 2. There was significant elevation in oxidative damage biomarkers; MDA and dityrosine, when the aerial parts of D. stramonium in zone 1 were compared with the same parts of zone 2. We concluded that there were different tolerance strategies in studied plant species that protected them against copper toxicity. In M. sylvestris, exclusion of Cu from the roots or its stabilization in the soil restricted Cu toxicity effects. On the other hand D. stramonium and C. ambrosioides, elevated their antioxidative enzyme activities in response to cu-toxicity. In addition, the species D. stramonium accumulated excess of Cu in leaves vacuoles.", "keywords": ["Chlorophyll", "0106 biological sciences", "0301 basic medicine", "Chloroplasts", "Malva", "Plants", "15. Life on land", "Lipid Metabolism", "Plant Roots", "01 natural sciences", "Antioxidants", "Mining", "6. Clean water", "Chenopodium", "Oxidative Stress", "Soil", "03 medical and health sciences", "Malondialdehyde", "Vacuoles", "Datura", "Tyrosine", "Biomass", "Copper", "Plant Proteins"], "contacts": [{"organization": "Massod Mashhadi Akbar Boojar, Faranak Goodarzi,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.chemosphere.2006.12.071"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemosphere", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.chemosphere.2006.12.071", "name": "item", "description": "10.1016/j.chemosphere.2006.12.071", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.chemosphere.2006.12.071"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-05-01T00:00:00Z"}}, {"id": "10.1016/j.compgeo.2020.103754", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:42Z", "type": "Journal Article", "created": "2020-08-11", "title": "Mathematical and computational modelling of vegetated soil incorporating hydraulically-driven finite strain deformation", "description": "Abstract In this paper a new model for the hydro-mechanical behaviour of rooted soils is developed. It is a physically-based model that couples finite strain soil deformation with unsaturated water and air flow, while improving on existing cohesion-based approaches to mechanical root reinforcement and empirical soil water-uptake approaches typically used to deal with rooted slopes. The model is used to show that the dynamics of soil-water pressure and soil deformation depend strongly on the physics of the root-water uptake and the elasto-plastic soil mechanics. Root water uptake can cause suctions and corresponding soil shrinkage sufficiently large to necessitate a finite-strain approach. Although this deformation can change the intrinsic permeability, hydraulic conductivity remains dominated by the water content. The model incorporates simultaneous air-flow, but this is shown to be unimportant for soil-water dynamics under the conditions assumed in example simulations. The mechanical action of roots is incorporated via a root stress tensor and a simulation is used to show how root tension is mobilised within a swelling soil. The developed model may be used to simulate both laboratory experiments and full-scale vegetated slopes.", "keywords": ["/dk/atira/pure/subjectarea/asjc/1900/1909", "name=Geotechnical Engineering and Engineering Geology", "/dk/atira/pure/subjectarea/asjc/1700/1706", "550", "Vegetated soil", "0211 other engineering and technologies", "Large-strain", "04 agricultural and veterinary sciences", "02 engineering and technology", "name=Computer Science Applications", "15. Life on land", "Roots", "510", "Slope", "Landslide", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://eprints.soton.ac.uk/442810/1/Woodman_et_al_revised_June20PURE.pdf"}, {"href": "https://doi.org/10.1016/j.compgeo.2020.103754"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Computers%20and%20Geotechnics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.compgeo.2020.103754", "name": "item", "description": "10.1016/j.compgeo.2020.103754", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.compgeo.2020.103754"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-01T00:00:00Z"}}, {"id": "10.1016/j.ecoleng.2017.08.010", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:45Z", "type": "Journal Article", "created": "2017-11-27", "title": "Sensitivity of the landslide model LAPSUS_LS to vegetation and soil parameters", "description": "Open Access\u0625\u0646 \u062a\u0623\u062b\u064a\u0631 \u0627\u0644\u063a\u0637\u0627\u0621 \u0627\u0644\u0646\u0628\u0627\u062a\u064a \u0639\u0644\u0649 \u0627\u0633\u062a\u0642\u0631\u0627\u0631 \u0627\u0644\u0645\u0646\u062d\u062f\u0631\u0627\u062a \u0645\u0641\u0647\u0648\u0645 \u062c\u064a\u062f\u064b\u0627 \u0639\u0644\u0649 \u0645\u0633\u062a\u0648\u0649 \u0627\u0644\u0645\u0646\u062d\u062f\u0631\u0627\u062a\u060c \u0644\u0643\u0646 \u0627\u0644\u0627\u0631\u062a\u0642\u0627\u0621 \u0625\u0644\u0649 \u0645\u0633\u062a\u0648\u0649 \u0645\u0633\u062a\u062c\u0645\u0639\u0627\u062a \u0627\u0644\u0645\u064a\u0627\u0647 \u0644\u0627 \u064a\u0632\u0627\u0644 \u064a\u0645\u062b\u0644 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\u0627\u0644\u0627\u062d\u062a\u0643\u0627\u0643 \u0627\u0644\u062f\u0627\u062e\u0644\u064a. \u0644\u0645 \u064a\u0643\u0646 \u0644\u0644\u0631\u0633\u0648\u0645 \u0627\u0644\u0625\u0636\u0627\u0641\u064a\u0629 \u0644\u0644\u0643\u062a\u0644\u0629 \u0627\u0644\u062d\u064a\u0648\u064a\u0629 \u0623\u064a \u062a\u0623\u062b\u064a\u0631 \u0643\u0628\u064a\u0631 \u0639\u0644\u0649 \u0639\u0645\u0644\u064a\u0627\u062a \u0627\u0644\u0645\u062d\u0627\u0643\u0627\u0629. \u0641\u064a \u0627\u0644\u062e\u062a\u0627\u0645\u060c \u0627\u0633\u062a\u062c\u0627\u0628\u062a LAPSUS_LS \u0628\u0634\u0643\u0644 \u062c\u064a\u062f \u0644\u0628\u064a\u0627\u0646\u0627\u062a \u0645\u062f\u062e\u0644\u0627\u062a \u0627\u0644\u062a\u0631\u0628\u0629 \u0648\u0627\u0644\u063a\u0637\u0627\u0621 \u0627\u0644\u0646\u0628\u0627\u062a\u064a\u060c \u0648\u0647\u064a \u0645\u0631\u0634\u062d \u0645\u0646\u0627\u0633\u0628 \u0644\u0646\u0645\u0630\u062c\u0629 \u0627\u0633\u062a\u0642\u0631\u0627\u0631 \u0627\u0644\u0645\u0646\u062d\u062f\u0631\u0627\u062a \u0627\u0644\u0646\u0628\u0627\u062a\u064a\u0629 \u0639\u0644\u0649 \u0645\u0633\u062a\u0648\u0649 \u0645\u0633\u062a\u062c\u0645\u0639\u0627\u062a \u0627\u0644\u0645\u064a\u0627\u0647.", "keywords": ["Cohesion (chemistry)", "http://aims.fao.org/aos/agrovoc/c_27199", "http://aims.fao.org/aos/agrovoc/c_4915", "F08 - Syst\u00e8mes et modes de culture", "[SDV]Life Sciences [q-bio]", "culture associ\u00e9e", "http://aims.fao.org/aos/agrovoc/c_1920", "FOS: Mechanical engineering", "Organic chemistry", "Plant Science", "02 engineering and technology", "Erythrina poeppigiana", "01 natural sciences", "630", "Mechanical Effects of Plant Roots on Slope Stability", "stabilisation du sol", "Agricultural and Biological Sciences", "Soil", "monoculture", "Engineering", "enracinement", "couverture du sol", "m\u00e9thode statistique", "Pathology", "Monoculture", "http://aims.fao.org/aos/agrovoc/c_1721", "http://aims.fao.org/aos/agrovoc/c_2018", "http://aims.fao.org/aos/agrovoc/c_24199", "http://aims.fao.org/aos/agrovoc/c_35927", "U10 - Informatique", " math\u00e9matiques et statistiques", "Susceptibility Mapping", "Life Sciences", "Hydrology (agriculture)", "Geology", "Coffea arabica", "[SDV] Life Sciences [q-bio]", "Chemistry", "Landslide", "Plant Responses to Flooding Stress", "Slope Stability", "Physical Sciences", "http://aims.fao.org/aos/agrovoc/c_6649", "Medicine", "Vegetation (pathology)", "http://aims.fao.org/aos/agrovoc/c_7377", "http://aims.fao.org/aos/agrovoc/c_7171", "0207 environmental engineering", "Soil Science", "Management", " Monitoring", " Policy and Law", "Transmissivity", "Environmental science", "mod\u00e8le math\u00e9matique", "FOS: Mathematics", "http://aims.fao.org/aos/agrovoc/c_12676", "http://aims.fao.org/aos/agrovoc/c_37897", "Landslide Hazards and Risk Assessment", "pratique culturale", "Biology", "0105 earth and related environmental sciences", "P36 - \u00c9rosion", " conservation et r\u00e9cup\u00e9ration des sols", "Soil science", "montagne", "Mechanical Engineering", "Slope stability", "Modeling", "Botany", "FOS: Earth and related environmental sciences", "15. Life on land", "Roots", "Bulk density", "Agronomy", "Geotechnical engineering", "13. Climate action", "Environmental Science", "Cohesion", "Mathematics"]}, "links": [{"href": "https://doi.org/10.1016/j.ecoleng.2017.08.010"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Ecological%20Engineering", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.ecoleng.2017.08.010", "name": "item", "description": "10.1016/j.ecoleng.2017.08.010", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.ecoleng.2017.08.010"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-12-01T00:00:00Z"}}, {"id": "10.1016/j.gde.2018.03.007", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:16:13Z", "type": "Journal Article", "created": "2018-04-16", "title": "Micromechanics of root development in soil", "description": "Our understanding of how roots develop in soil may be at the eve of significant transformations. The formidable expansion of imaging technologies enables live observations of the rhizosphere micro-pore architecture at unprecedented resolution. Granular matter physics provides ways to understand the microscopic fluctuations of forces in soils, and the increasing knowledge of plant mechanobiology may shed new lights on how roots perceive soil heterogeneity. This opinion paper exposes how recent scientific achievements may contribute to refresh our views on root growth in heterogeneous environments.", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "/dk/atira/pure/subjectarea/asjc/1300/1311", "name=Genetics", "15. Life on land", "Plant Roots", "name=Developmental Biology", "Genetic Heterogeneity", "Soil", "03 medical and health sciences", "13. Climate action", "Rhizosphere", "/dk/atira/pure/subjectarea/asjc/1300/1309", "Mechanical Phenomena"]}, "links": [{"href": "https://doi.org/10.1016/j.gde.2018.03.007"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Current%20Opinion%20in%20Genetics%20%26amp%3B%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.gde.2018.03.007", "name": "item", "description": "10.1016/j.gde.2018.03.007", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.gde.2018.03.007"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-08-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2005.02.002", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:55Z", "type": "Journal Article", "created": "2005-04-07", "title": "Effects Of Simultaneous Ozone Exposure And Nitrogen Loads On Carbohydrate Concentrations, Biomass, And Growth Of Young Spruce Trees (Picea Abies)", "description": "Spruce saplings were grown under different nitrogen fertilization regimes in eight chamberless fumigation systems, which were fumigated with either charcoal-filtered (F) or ambient air (O3). After the third growing season trees were harvested for biomass and non-structural carbohydrate analysis. Nitrogen had an overall positive effect on the investigated plant parameters, resulting in increased shoot elongation, biomass production, fine root soluble carbohydrate concentrations, and also slightly increased starch concentrations of stems and roots. Only needle starch concentrations and fine root sugar alcohol concentrations were decreased. Ozone fumigation resulted in needle discolorations and affected most parameters negatively, including decreased shoot elongation and decreased starch concentrations in roots, stems, and needles. In fine roots, however, soluble carbohydrate concentrations remained unaffected or increased by ozone fumigation. The only significant interaction was an antagonistic effect on root starch concentrations, where higher nitrogen levels alleviated the negative impact of ozone.", "keywords": ["Air Pollutants", "Ecology", "Plant Stems", "Nitrogen", "Carbohydrates", "04 agricultural and veterinary sciences", "15. Life on land", "Plant Roots", "01 natural sciences", "Plant Leaves", "Ozone", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "Biomass", "Picea", "Fertilizers", "0105 earth and related environmental sciences"], "contacts": [{"organization": "V.F.D. Thomas, Walter Fl\u00fcckiger, Sabine Braun,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2005.02.002"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2005.02.002", "name": "item", "description": "10.1016/j.envpol.2005.02.002", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2005.02.002"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-10-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2006.06.002", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:55Z", "type": "Journal Article", "created": "2006-09-29", "title": "Growth Of Lygeum Spartum In Acid Mine Tailings: Response Of Plants Developed From Seedlings, Rhizomes And At Field Conditions", "description": "Lygeum spartum is a native species in semiarid Mediterranean areas that grows spontaneously on acid mine tailings. We aimed to study the suitability of this plant for phytostabilization. L. spartum was grown from both seeds and rhizomes in acid mine tailings with various fertilizer and lime treatments. Untreated soils had a solution pH of 2.9 with high concentrations of dissolved salts (Electrical Conductivity 25 dS m(-1)) and Zn (3100 mg L(-1)). Plants grown on untreated soil had high shoot metal concentrations (>4000 mg kg(-1)Zn). Liming increased the solution pH to 5.5 and reduced the dissolved salts by more than 75%, resulting in lower shoot metal accumulation. Plants grown from rhizomes accumulated less metal than those grown from seeds. Plants collected in the field had metal concentrations an order of magnitude less than plants raised in the growth chamber. These differences may be due to the higher moisture content and homogeneous nature of the soils used in the pot experiment.", "keywords": ["Anions", "Waste Products", "Oxides", "04 agricultural and veterinary sciences", "Calcium Compounds", "Hydrogen-Ion Concentration", "15. Life on land", "Poaceae", "Plant Roots", "01 natural sciences", "Mining", "Plant Leaves", "Soil", "Zinc", "Seedlings", "Cations", "Metals", " Heavy", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Fertilizers", "Plant Shoots", "Rhizome", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2006.06.002"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2006.06.002", "name": "item", "description": "10.1016/j.envpol.2006.06.002", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2006.06.002"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-02-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2006.10.013", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:55Z", "type": "Journal Article", "created": "2006-12-01", "title": "Behavior Of Trifolium Repens And Lolium Perenne Growing In A Heavy Metal Contaminated Field: Plant Metal Concentration And Phytotoxicity", "description": "The use of a vegetation cover for the management of heavy metal contaminated soils needs prior investigations on the plant species the best sustainable. In this work, behaviors of Trifolium repens and Lolium perenne, growing in a metal-polluted field located near a closed lead smelter, were investigated through Cd, Pb and Zn-plant metal concentrations and their phytotoxicity. In these plant species, metals were preferentially accumulated in roots than in shoots, as follow: Cd>Zn>Pb. Plant exposure to such metals induced oxidative stress in the considered organs as revealed by the variations in malondialdehyde levels and superoxide dismutase activities. These oxidative changes were closely related to metal levels, plant species and organs. Accordingly, L. perenne seemed to be more affected by metal-induced oxidative stress than T. repens. Taken together, these findings allow us to conclude that both the plant species could be suitable for the phytomanagement of metal-polluted soils.", "keywords": ["Superoxide Dismutase", "Environmental Exposure", "04 agricultural and veterinary sciences", "15. Life on land", "Plant Roots", "01 natural sciences", "Oxidative Stress", "Soil", "Zinc", "Biodegradation", " Environmental", "Lead", "Malondialdehyde", "Metals", " Heavy", "Lolium", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Trifolium", "Plant Shoots", "Cadmium", "Environmental Monitoring", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2006.10.013"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2006.10.013", "name": "item", "description": "10.1016/j.envpol.2006.10.013", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2006.10.013"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-06-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2007.06.018", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:55Z", "type": "Journal Article", "created": "2007-07-26", "title": "Contribution Of Heavy Metals And As-Loaded Lupin Root Mineralization To The Availability Of The Pollutants In Multi-Contaminated Soils", "description": "White lupin (Lupinus albus L.) is an annual crop that has been used for phytostabilization of acidified multi-contaminated soils. Once the culture cycle is over, after shoot harvesting, a progressive transference of contaminants from roots to soil may take place as decomposition of roots occurs. An incubation experiment with Cu, Zn, Cd, and As-loaded roots of white lupin and soils with different pH values and concentrations of these contaminants from the area affected by a mine spill at Aznalc\u00f3llar (near Seville, Spain) was performed in order to assess the effect of the decomposition of the roots to the pH and (NH4)2SO4-extractable levels of these pollutants in the soils. Pollutants loaded-roots were mineralized (56 d) at a ratio similar to animal manures (15.8-19.4% of total organic carbon) in soil. The estimated root inputs of contaminants in comparison to their extractable concentrations in soil were high, especially in the control, non-contaminated and neutral contaminated soils. However, the extractable concentrations of the toxic elements in the soil were mainly governed by soil pH. Hence, the correction and maintenance of the soil pH within the range 5-6 after lupin culture is essential for long-time phytostabilization of acidified multi-contaminated soils.", "keywords": ["2. Zero hunger", "Hydrogen-Ion Concentration", "15. Life on land", "Plant Roots", "01 natural sciences", "Mining", "6. Clean water", "Arsenic", "Lupinus", "Zinc", "Biodegradation", " Environmental", "Spain", "13. Climate action", "Metals", " Heavy", "Soil Pollutants", "Copper", "Humic Substances", "Cadmium", "Environmental Monitoring", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2007.06.018"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2007.06.018", "name": "item", "description": "10.1016/j.envpol.2007.06.018", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2007.06.018"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-03-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2010.11.032", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:56Z", "type": "Journal Article", "created": "2010-12-29", "title": "Lumbricus Terrestris L. Activity Increases The Availability Of Metals And Their Accumulation In Maize And Barley", "description": "The effect of the earthworm Lumbricus terrestris L. on metal availability in two mining soils was assessed by means of chemical extraction methods and a pot experiment using crop plants. Results from single and sequential extractions showed that L. terrestris had a slight effect on metal fractionation in the studied soils: only metals bound to the soil organic matter were significantly increased in some cases. However, we found that L. terrestris significantly increased root, shoot and total Pb and Zn concentrations in maize and barley for the soil with the highest concentrations of total and available metals. Specifically, shoot Pb concentration was increased by a factor of 7.5 and 3.9 for maize and barley, respectively, while shoot Zn concentration was increased by a factor of 3.7 and 1.7 for maize and barley, respectively. Our results demonstrated that earthworm activity increases the bioavailability of metals in soils.", "keywords": ["2. Zero hunger", "Hordeum", "04 agricultural and veterinary sciences", "Chemical Fractionation", "15. Life on land", "Plant Roots", "Zea mays", "01 natural sciences", "Mining", "Soil", "Zinc", "Biodegradation", " Environmental", "Lead", "Spain", "Animals", "Soil Pollutants", "0401 agriculture", " forestry", " and fisheries", "Oligochaeta", "Plant Shoots", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2010.11.032"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2010.11.032", "name": "item", "description": "10.1016/j.envpol.2010.11.032", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2010.11.032"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2011-03-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2021.116897", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:15:57Z", "type": "Journal Article", "created": "2021-03-13", "title": "X-ray absorption spectroscopy evidence of sulfur-bound cadmium in the Cd-hyperaccumulator Solanum nigrum and the non-accumulator Solanum melongena", "description": "It has been proposed that non-protein thiols and organic acids play a major role in cadmium phytoavailability and distribution in plants. In the Cd-hyperaccumulator Solanum nigrum and non-accumulator Solanum melongena, the role of these organic ligands in the accumulation and detoxification mechanisms of Cd are debated. In this study, we used X-ray absorption spectroscopy to investigate Cd speciation in these plants (roots, stem, leaves) and in the soils used for their culture to unravel the plants responses to Cd exposure. The results show that Cd in the 100\u00a0mg\u00a0kg-1 Cd-doped clayey loam soil is sorbed onto iron oxyhydroxides. In both S.\u00a0nigrum and S.\u00a0melongena, Cd in roots and fresh leaves is mainly bound to thiol ligands, with a small contribution of inorganic S ligands in S.\u00a0nigrum leaves. We interpret the Cd binding to sulfur ligands as detoxification mechanisms, possibly involving the sequestration of Cd complexed with glutathione or phytochelatins in the plant vacuoles. In the stems, results show an increase binding of Cd to -O ligands (>50% for S.\u00a0nigrum). We suggest that Cd is partly complexed by organic acids for transportation in the sap.", "keywords": ["[SDE] Environmental Sciences", "0106 biological sciences", "570", "http://aims.fao.org/aos/agrovoc/c_28566", "cadmium", "http://aims.fao.org/aos/agrovoc/c_2219", "Speciation", "Plant Roots", "01 natural sciences", "[SDV.BV.BOT] Life Sciences [q-bio]/Vegetal Biology/Botanics", "d\u00e9toxification", "Soil Pollutants", "http://aims.fao.org/aos/agrovoc/c_32389", "Solanum melongena", "http://aims.fao.org/aos/agrovoc/c_5383", "Solanaceae", "Solanum nigrum", "0105 earth and related environmental sciences", "580", "Toxicity", "thiol", "X-Ray absorption spectroscopy", "[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics", "http://aims.fao.org/aos/agrovoc/c_7731", "bioaccumulation", "Biodegradation", " Environmental", "X-Ray Absorption Spectroscopy", "acide organique", "http://aims.fao.org/aos/agrovoc/c_7218", "[SDE]Environmental Sciences", "http://aims.fao.org/aos/agrovoc/c_32250", "spectroscopie aux rayons x", "H50 - Troubles divers des plantes", "P02 - Pollution", "http://aims.fao.org/aos/agrovoc/c_1178", "Sulfur", "Cadmium"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2021.116897"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2021.116897", "name": "item", "description": "10.1016/j.envpol.2021.116897", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2021.116897"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-06-01T00:00:00Z"}}, {"id": "10.1016/j.geoderma.2025.117299", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:16:20Z", "type": "Journal Article", "created": "2025-04-19", "title": "Synchrotron-based 3D X-ray computed tomography reveals root system architecture: Plastic responses to phosphorus placement", "description": "We used synchrotron-based X-ray computed tomography (SRXCT) to visualize root distribution in soil cores. X-ray CT is emerging as a leading technique to study plant roots, but SRXCT offers potential advantages compared with conventional X-ray sources, including producing X-rays of higher intensity that are collimated, monochromatic and tuneable; delivering high-resolution data whilst avoiding issues such as beam-hardening and source divergence. We demonstrate the suitability of SRXCT for observing the root system of wheat plants growing in two soils (Calcisol and Ultisol) in response to placement of different phosphorus fertilisers. To optimize scanning quality, we tested the use of an inverse \u2018mask\u2019 in front of the soil cores to achieve a more uniform attenuation along the sample, thereby avoiding saturation of the detector along the thinnest parts of the soil cores. Secondly, we developed a deep learning approach for segmentation and quantification of root length and diameter. Our results demonstrate the use of SRXCT as a tool for studying root system architecture in soil at high spatial resolution. The SRXCT method marks a new stride towards advancing our understanding of root structures in unprecedented detail, opening further avenues for exploring plant-soil interactions.", "keywords": ["X-ray computed tomography", "Image segmentation", "Plant roots", "Root system architecture", "Soil phosphorus", "Science", "Q", "Root distribution", "Synchrotron"]}, "links": [{"href": "https://doi.org/10.1016/j.geoderma.2025.117299"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geoderma", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.geoderma.2025.117299", "name": "item", "description": "10.1016/j.geoderma.2025.117299", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.geoderma.2025.117299"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-05-01T00:00:00Z"}}, {"id": "10.1016/j.jbiomech.2016.04.023", "type": "Feature", "geometry": null, "properties": {"updated": "2026-05-25T16:16:25Z", "type": "Journal Article", "created": "2016-04-30", "title": "Mapping soil deformation around plant roots using in vivo 4D X-ray Computed Tomography and Digital Volume Correlation", "description": "The mechanical impedance of soils inhibits the growth of plant roots, often being the most significant physical limitation to root system development. Non-invasive imaging techniques have recently been used to investigate the development of root system architecture over time, but the relationship with soil deformation is usually neglected. Correlative mapping approaches parameterised using 2D and 3D image data have recently gained prominence for quantifying physical deformation in composite materials including fibre-reinforced polymers and trabecular bone. Digital Image Correlation (DIC) and Digital Volume Correlation (DVC) are computational techniques which use the inherent material texture of surfaces and volumes, captured using imaging techniques, to map full-field deformation components in samples during physical loading. Here we develop an experimental assay and methodology for four-dimensional, in vivo X-ray Computed Tomography (XCT) and apply a Digital Volume Correlation (DVC) approach to the data to quantify deformation. The method is validated for a field-derived soil under conditions of uniaxial compression, and a calibration study is used to quantify thresholds of displacement and strain measurement. The validated and calibrated approach is then demonstrated for an in vivo test case in which an extending maize root in field-derived soil was imaged hourly using XCT over a growth period of 19h. This allowed full-field soil deformation data and 3D root tip dynamics to be quantified in parallel for the first time. This fusion of methods paves the way for comparative studies of contrasting soils and plant genotypes, improving our understanding of the fundamental mechanical processes which influence root system development.", "keywords": ["0301 basic medicine", "Soil", "03 medical and health sciences", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "Four-Dimensional Computed Tomography", "15. Life on land", "Plant Roots", "Zea mays", "620", "Mechanical Phenomena"]}, "links": [{"href": "https://eprints.soton.ac.uk/394374/1/__filestore.soton.ac.uk_users_fh1d15_mydesktop_Keyes_et_al_Journal_of_Biomechaincs_Root_DVC_2016.pdf"}, {"href": "https://doi.org/10.1016/j.jbiomech.2016.04.023"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Biomechanics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jbiomech.2016.04.023", "name": "item", "description": "10.1016/j.jbiomech.2016.04.023", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jbiomech.2016.04.023"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-06-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=roots&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=roots&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=roots&", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=roots&offset=50", "hreflang": "en-US"}], "numberMatched": 336, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-05-26T08:13:56.837552Z"}