{"type": "FeatureCollection", "features": [{"id": "10.1128/aem.01355-07", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2007-11-17", "title": "Effects Of Wildfire And Harvest Disturbances On Forest Soil Bacterial Communities", "description": "ABSTRACT

Wildfires and harvesting are important disturbances to forest ecosystems, but their effects on soil microbial communities are not well characterized and have not previously been compared directly. This study was conducted at sites with similar soil, climatic, and other properties in a spruce-dominated boreal forest near Chisholm, Alberta, Canada. Soil microbial communities were assessed following four treatments: control, harvest, burn, and burn plus timber salvage (burn-salvage). Burn treatments were at sites affected by a large wildfire in May 2001, and the communities were sampled 1 year after the fire. Microbial biomass carbon decreased 18%, 74%, and 53% in the harvest, burn, and burn-salvage treatments, respectively. Microbial biomass nitrogen decreased 25% in the harvest treatment, but increased in the burn treatments, probably because of microbial assimilation of the increased amounts of available NH 4 + and NO 3 \uffe2\uff88\uff92 due to burning. Bacterial community composition was analyzed by nonparametric ordination of molecular fingerprint data of 119 samples from both ribosomal intergenic spacer analysis (RISA) and rRNA gene denaturing gradient gel electrophoresis. On the basis of multiresponse permutation procedures, community composition was significantly different among all treatments, with the greatest differences between the two burned treatments versus the two unburned treatments. The sequencing of DNA bands from RISA fingerprints revealed distinct distributions of bacterial divisions among the treatments. Gamma - and Alphaproteobacteria were highly characteristic of the unburned treatments, while Betaproteobacteria and members of Bacillus were highly characteristic of the burned treatments. Wildfire had distinct and more pronounced effects on the soil microbial community than did harvesting.

", "keywords": ["DNA", " Bacterial", "Electrophoresis", "0301 basic medicine", "0303 health sciences", "Bacteria", "Molecular Sequence Data", "Biodiversity", "Sequence Analysis", " DNA", "15. Life on land", "Nucleic Acid Denaturation", "DNA", " Ribosomal", "Fires", "6. Clean water", "Alberta", "Trees", "03 medical and health sciences", "13. Climate action", "DNA", " Ribosomal Spacer", "Biomass", "Soil Microbiology"], "contacts": [{"organization": "B.E. Kishchuk, William W. Mohn, Nancy R. Smith,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1128/aem.01355-07"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.01355-07", "name": "item", "description": "10.1128/aem.01355-07", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.01355-07"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-01-01T00:00:00Z"}}, {"id": "10.1127/nova_hedwigia/2020/0602", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2020-11-04", "title": "Bryophyte diversity in the gypsum outcrops of Sicily (Italy)", "description": "Abstract: A study on the bryophyte diversity of 12 Sicilian gypsum outcrops, falling in 4 Nature Reserves and 5 Special Areas of Conservation (SAC), is presented in order to increase knowledge about this peculiar flora for which conservation efforts need to be addressed. The bryoflora consists of a total of 85 taxa, 8 liverworts and 77 mosses, most of them belonging to the Pottiaceae family and characterized by xero-morphological adaptations. The bio-ecological analysis has emphasized the prevalence of xerophytic and basiphytic species with life form turf and life strategy colonist. Regarding the gypsicolous character, only one species, Tortula revolvens, behaves as a strict gypso- phyte, and a small group of species (Aloina spp., Crossidium spp.) as wide gypsophytes. The bryo- floras of the sites show a quite high diversity level in species composition and include some rare and interesting taxa for Italy, e.g. Acaulon triquetrum, Aloina brevirostris, Syntrichia handelii, Tortula brevissima, Tortula revolvens, Tortula solmsii, Petalophyllum ralfsii. This study, which im- proves the information on the gypsum flora, represents a contribution to the knowledge of a habitat which is today considered a priority for conservation", "keywords": ["0106 biological sciences", "bryophytes", "Bryophytes", "conservation", "Conservation", "Gypsum", "15. Life on land", "Sicily", "01 natural sciences", "gypsum"]}, "links": [{"href": "https://doi.org/10.1127/nova_hedwigia/2020/0602"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nova%20Hedwigia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1127/nova_hedwigia/2020/0602", "name": "item", "description": "10.1127/nova_hedwigia/2020/0602", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1127/nova_hedwigia/2020/0602"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-19T00:00:00Z"}}, {"id": "10.1128/aem.00698-21", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2021-06-23", "title": "Limitation of Microbial Processes at Saturation-Level Salinities in a Microbial Mat Covering a Coastal Salt Flat", "description": "

Due to their abilities to survive intense radiation and low water availability, hypersaline microbial mats are often suggested to be analogs of potential extraterrestrial life. However, even on Earth, the limitations imposed on microbial processes by saturation-level salinity have rarely been studied in situ . Soil microbes are highly diverse and control most soil biogeochemical reactions. We examined how microbial functional genes and biogeochemical pools responded to the altered chemical inputs accompanying land use change. We examined paired native grasslands and adjacentEucalyptusplantations (previously grassland) in Uruguay, a region that lacked forests before European settlement. Along with measurements of soil carbon, nitrogen, and bacterial diversity, we analyzed functional genes using the GeoChip 2.0 microarray, which simultaneously quantified several thousand genes involved in soil carbon and nitrogen cycling. Plantations and grassland differed significantly in functional gene profiles, bacterial diversity, and biogeochemical pool sizes. Most grassland profiles were similar, but plantation profiles generally differed from those of grasslands due to differences in functional gene abundance across diverse taxa. Eucalypts decreased ammonification and N fixation functional genes by 11% and 7.9% (P< 0.01), which correlated with decreased microbial biomass N and more NH4+in plantation soils. Chitinase abundance decreased 7.8% in plantations compared to levels in grassland (P= 0.017), and C polymer-degrading genes decreased by 1.5% overall (P< 0.05), which likely contributed to 54% (P< 0.05) more C in undecomposed extractable soil pools and 27% less microbial C (P< 0.01) in plantation soils. In general, afforestation altered the abundance of many microbial functional genes, corresponding with changes in soil biogeochemistry, in part through altered abundance of overall functional gene types rather than simply through changes in specific taxa. Such changes in microbial functional genes correspond with altered C and N storage and have implications for long-term productivity in these soils.

", "keywords": ["Nitrogen", "Argentina", "Sequence Homology", "soil science", "Microbiology", "333", "Trees", "Soil", "afforestation", "Cluster Analysis", "Biology", "Soil Microbiology", "Oligonucleotide Array Sequence Analysis", "2. Zero hunger", "Environmental Microbiology and Microbial Ecology", "Bacteria", "Chitinases", "Biodiversity", "DNA", "Gene Pool", "04 agricultural and veterinary sciences", "South America", "15. Life on land", "Microarray Analysis", "Carbon", "Uruguay", "0401 agriculture", " forestry", " and fisheries", "Eucalyptus plantation"]}, "links": [{"href": "https://doi.org/10.1128/aem.01126-09"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.01126-09", "name": "item", "description": "10.1128/aem.01126-09", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.01126-09"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-10-01T00:00:00Z"}}, {"id": "10.3389/fevo.2021.714134", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:22:17Z", "type": "Journal Article", "created": "2021-09-30", "title": "Intracellular Storage Reduces Stoichiometric Imbalances in Soil Microbial Biomass \u2013 A Theoretical Exploration", "description": "

Microbial intracellular storage is key to defining microbial resource use strategies and could contribute to carbon (C) and nutrient cycling. However, little attention has been devoted to the role of intracellular storage in soil processes, in particular from a theoretical perspective. Here we fill this gap by integrating intracellular storage dynamics into a microbially explicit soil C and nutrient cycling model. Two ecologically relevant modes of storage are considered: reserve storage, in which elements are routed to a storage compartment in proportion to their uptake rate, and surplus storage, in which elements in excess of microbial stoichiometric requirements are stored and limiting elements are remobilized from storage to fuel growth and microbial maintenance. Our aim is to explore with this model how these different storage modes affect the retention of C and nutrients in active microbial biomass under idealized conditions mimicking a substrate pulse experiment. As a case study, we describe C and phosphorus (P) dynamics using literature data to estimate model parameters. Both storage modes enhance the retention of elements in microbial biomass, but the surplus storage mode is more effective to selectively store or remobilize C and nutrients according to microbial needs. Enhancement of microbial growth by both storage modes is largest when the substrate C:nutrient ratio is high (causing nutrient limitation after substrate addition) and the amount of added substrate is large. Moreover, storage increases biomass nutrient retention and growth more effectively when resources are supplied in a few large pulses compared to several smaller pulses (mimicking a nearly constant supply), which suggests storage to be particularly relevant in highly dynamic soil microhabitats. Overall, our results indicate that storage dynamics are most important under conditions of strong stoichiometric imbalance and may be of high ecological relevance in soil environments experiencing large variations in C and nutrient supply.

", "keywords": ["0301 basic medicine", "2. Zero hunger", "ecological stoichiometry", "nutrient limitation", "0303 health sciences", "microbial model", "Ecology", "Evolution", "15. Life on land", "surplus accumulation", "6. Clean water", "reserve storage", "03 medical and health sciences", "13. Climate action", "international", "QH359-425", "Plan_S-Compliant_OA", "QH540-549.5"]}, "links": [{"href": "https://doi.org/10.3389/fevo.2021.714134"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Ecology%20and%20Evolution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fevo.2021.714134", "name": "item", "description": "10.3389/fevo.2021.714134", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fevo.2021.714134"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-09-30T00:00:00Z"}}, {"id": "10.1128/aem.01536-06", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2006-11-14", "title": "Community Structure Of Ammonia-Oxidizing Bacteria Under Long-Term Application Of Mineral Fertilizer And Organic Manure In A Sandy Loam Soil", "description": "ABSTRACT

The effects of mineral fertilizer (NPK) and organic manure on the community structure of soil ammonia-oxidizing bacteria (AOB) was investigated in a long-term (16-year) fertilizer experiment. The experiment included seven treatments: organic manure, half organic manure N plus half fertilizer N, fertilizer NPK, fertilizer NP, fertilizer NK, fertilizer PK, and the control (without fertilization). N fertilization greatly increased soil nitrification potential, and mineral N fertilizer had a greater impact than organic manure, while N deficiency treatment (PK) had no significant effect. AOB community structure was analyzed by PCR-denaturing gradient gel electrophoresis (PCR-DGGE) of the amoA gene, which encodes the \uffce\uffb1 subunit of ammonia monooxygenase. DGGE profiles showed that the AOB community was more diverse in N-fertilized treatments than in the PK-fertilized treatment or the control, while one dominant band observed in the control could not be detected in any of the fertilized treatments. Phylogenetic analysis showed that the DGGE bands derived from N-fertilized treatments belonged to Nitrosospira cluster 3, indicating that N fertilization resulted in the dominance of Nitrosospira cluster 3 in soil. These results demonstrate that long-term application of N fertilizers could result in increased soil nitrification potential and the AOB community shifts in soil. Our results also showed the different effects of mineral fertilizer N versus organic manure N; the effects of P and K on the soil AOB community; and the importance of balanced fertilization with N, P, and K in promoting nitrification functions in arable soils.

", "keywords": ["2. Zero hunger", "Minerals", "Bacteria", "Nitrogen", "Molecular Sequence Data", "Sequence Analysis", " DNA", "04 agricultural and veterinary sciences", "6. Clean water", "Manure", "Ammonia", "0401 agriculture", " forestry", " and fisheries", "Fertilizers", "Oxidoreductases", "Ecosystem", "Gammaproteobacteria", "Phylogeny", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1128/aem.01536-06"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.01536-06", "name": "item", "description": "10.1128/aem.01536-06", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.01536-06"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2007-01-15T00:00:00Z"}}, {"id": "10.1128/aem.02209-19", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2019-12-04", "title": "Casimicrobium huifangae gen. nov., sp. nov., a Ubiquitous \u201cMost-Wanted\u201d Core Bacterial Taxon from Municipal Wastewater Treatment Plants", "description": "

The activated sludge process is the most widely applied biotechnology and is one of the best ecosystems to address microbial ecological principles. Yet, the cultivation of core bacteria and the exploration of their physiology and ecology are limited. In this study, the core and novel bacterial taxon C. huifangae was cultivated and characterized. This study revealed that C. huifangae functioned as an important module hub in the activated sludge microbiome, and it potentially plays an important role in municipal wastewater treatment plants.

", "keywords": ["0301 basic medicine", "activated sludge microbiome", "DATABASE", "DIVERSITY", "nitrogen and phosphorus removal", "GENOME ANNOTATION", "POLYPHOSPHATE-ACCUMULATING ORGANISMS", "12. Responsible consumption", "ACTIVATED-SLUDGE", "03 medical and health sciences", "SEARCH", "RNA", " Ribosomal", " 16S", "11. Sustainability", "microbial network", "Phylogeny", "WWTP", "0303 health sciences", "IDENTIFICATION", "Sewage", "Microbiota", "Betaproteobacteria", "core taxa", "15. Life on land", "6. Clean water", "COMMUNITY", "RNA", " Bacterial", "Casimicrobium huifangae", "13. Climate action", "Earth and Environmental Sciences", "BIOLOGICAL PHOSPHORUS REMOVAL", "municipal wastewater treatment plant", "CARBON SOURCE"]}, "links": [{"href": "https://journals.asm.org/doi/pdf/10.1128/AEM.02209-19"}, {"href": "https://doi.org/10.1128/aem.02209-19"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.02209-19", "name": "item", "description": "10.1128/aem.02209-19", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.02209-19"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-02-03T00:00:00Z"}}, {"id": "10.1128/aem.02453-08", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2009-02-07", "title": "A Vaccine Against Rumen Methanogens Can Alter The Composition Of Archaeal Populations", "description": "ABSTRACT

The objectives of this study were to formulate a vaccine based upon the different species/strains of methanogens present in sheep intended to be immunized and to determine if a targeted vaccine could be used to decrease the methane output of the sheep. Two 16S rRNA gene libraries were used to survey the methanogenic archaea in sheep prior to vaccination, and methanogens representing five phylotypes were found to account for >52% of the different species/strains of methanogens detected. A vaccine based on a mixture of these five methanogens was then formulated, and 32 sheep were vaccinated on days 0, 28, and 103 with either a control or the anti-methanogen vaccine. Enzyme-linked immunosorbent assay analysis revealed that each vaccination with the anti-methanogen formulation resulted in higher specific immunoglobulin G titers in plasma, saliva, and rumen fluid. Methane output levels corrected for dry-matter intake for the control and treatment groups were not significantly different, and real-time PCR data also indicated that methanogen numbers were not significantly different for the two groups after the second vaccination. However, clone library data indicated that methanogen diversity was significantly greater in sheep receiving the anti-methanogen vaccine and that the vaccine may have altered the composition of the methanogen population. A correlation between 16S rRNA gene sequence relatedness and cross-reactivity for the methanogens ( R 2 = 0.90) also exists, which suggests that a highly specific vaccine can be made to target specific strains of methanogens and that a more broad-spectrum approach is needed for success in the rumen. Our data also suggest that methanogens take longer than 4 weeks to adapt to dietary changes and call into question the validity of experimental results based upon a 2- to 4-week acclimatization period normally observed for bacteria.

", "keywords": ["Rumen", "Molecular Sequence Data", "DNA", " Ribosomal", "630", "Antibodies", "Plasma", "RNA", " Ribosomal", " 16S", "2402 Applied Microbiology and Biotechnology", "Animals", "Saliva", "1106 Food Science", "2. Zero hunger", "Vaccines", "Gastric Juice", "Sheep", "0402 animal and dairy science", "Biodiversity", "Sequence Analysis", " DNA", "04 agricultural and veterinary sciences", "Archaea", "3. Good health", "DNA", " Archaeal", "Immunoglobulin G", "1305 Biotechnology", "2303 Ecology", "Methane"]}, "links": [{"href": "https://doi.org/10.1128/aem.02453-08"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.02453-08", "name": "item", "description": "10.1128/aem.02453-08", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.02453-08"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2009-04-01T00:00:00Z"}}, {"id": "10.1128/aem.02541-13", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2013-09-21", "title": "Impact Of Logging And Forest Conversion To Oil Palm Plantations On Soil Bacterial Communities In Borneo", "description": "ABSTRACT

Tropical forests are being rapidly altered by logging and cleared for agriculture. Understanding the effects of these land use changes on soil bacteria, which constitute a large proportion of total biodiversity and perform important ecosystem functions, is a major conservation frontier. Here we studied the effects of logging history and forest conversion to oil palm plantations in Sabah, Borneo, on the soil bacterial community. We used paired-end Illumina sequencing of the 16S rRNA gene, V3 region, to compare the bacterial communities in primary, once-logged, and twice-logged forest and land converted to oil palm plantations. Bacteria were grouped into operational taxonomic units (OTUs) at the 97% similarity level, and OTU richness and local-scale \uffce\uffb1-diversity showed no difference between the various forest types and oil palm plantations. Focusing on the turnover of bacteria across space, true \uffce\uffb2-diversity was higher in oil palm plantation soil than in forest soil, whereas community dissimilarity-based metrics of \uffce\uffb2-diversity were only marginally different between habitats, suggesting that at large scales, oil palm plantation soil could have higher overall \uffce\uffb3-diversity than forest soil, driven by a slightly more heterogeneous community across space. Clearance of primary and logged forest for oil palm plantations did, however, significantly impact the composition of soil bacterial communities, reflecting in part the loss of some forest bacteria, whereas primary and logged forests did not differ in composition. Overall, our results suggest that the soil bacteria of tropical forest are to some extent resilient or resistant to logging but that the impacts of forest conversion to oil palm plantations are more severe.

", "keywords": ["DNA", " Bacterial", "0301 basic medicine", "Tropical Climate", "0303 health sciences", "Bacteria", "Agriculture", "Sequence Analysis", " DNA", "15. Life on land", "Biota", "DNA", " Ribosomal", "333", "Trees", "03 medical and health sciences", "Borneo", "13. Climate action", "RNA", " Ribosomal", " 16S", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1128/aem.02541-13"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.02541-13", "name": "item", "description": "10.1128/aem.02541-13", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.02541-13"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-12-01T00:00:00Z"}}, {"id": "10.3389/fmech.2018.00018", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:22:18Z", "type": "Journal Article", "created": "2018-11-20", "title": "The Role of Heat Transfer Limitations in Polymer Pyrolysis at the Microscale", "description": "Pyrolysis of synthetic or natural polymers is an important process in many industries such as fire safety, thermal recycling, and biomass power generation. The kinetics of pyrolysis is usually studied by thermogravimetric analysis (TGA), which is based on measuring the mass loss of a microscale sample and measuring the temperature of the surrounding fluid during controlled heating. The literature is rich in TGA measurements, which are often assumed to be governed solely by chemical kinetics. Heat and mass transfer effects, however, can occur when the sample mass is too large. Only a few studies in the literature quantify the threshold for the initial mass, above which heat transfer effects are significant. Here, we systematically analyse the role of heat transfer in TGA measurements, review existing formulations, and provide a novel threshold for the maximum sample mass. We focus on the natural polymer cellulose, a surrogate for biomass, and split the problem into heat transfer within the sample (intraparticle) and between the sample and the fluid (interparticle). Using dimensional analysis we derive two upper bound thresholds for the initial sample mass as a function of heating. One threshold is calculated based on interparticle heat transfer and depends on flow and heating conditions as well as material and fluid properties. The other is calculated based on intraparticle heat transfer and depends on heating conditions and material properties. Both thresholds were validated with measurements and previous studies from the literature. Comparing both thresholds shows that the maximum sample mass in a TGA is dictated by interparticle heat transfer and rapidly reduces with heating rate from 1.8 mg at 10 K/min to 0.15 mg at 50 K/min. These results enable the selection of appropriate sample masses and heating conditions in TGA measurements, which in turn will lead to a better understanding of polymer pyrolysis.", "keywords": ["TGA", "thermal lag", "Mechanical Engineering", "02 engineering and technology", "0915 Interdisciplinary Engineering", "chemistry", "7. Clean energy", "Industrial and Manufacturing Engineering", "cellulose", "Computer Science Applications", "0201 civil engineering", "12. Responsible consumption", "kinetics", "13. Climate action", "transport", "TJ1-1570", "General Materials Science", "Mechanical engineering and machinery", "0204 chemical engineering", "0913 Mechanical Engineering"], "contacts": [{"organization": "Richter, F, Rein, G,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.3389/fmech.2018.00018"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Mechanical%20Engineering", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmech.2018.00018", "name": "item", "description": "10.3389/fmech.2018.00018", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmech.2018.00018"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-11-20T00:00:00Z"}}, {"id": "10.1128/aem.02050-12", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2012-10-01", "title": "Response Of The Soil Microbial Community To Changes In Precipitation In A Semiarid Ecosystem", "description": "ABSTRACT

Microbial communities regulate many belowground carbon cycling processes; thus, the impact of climate change on the structure and function of soil microbial communities could, in turn, impact the release or storage of carbon in soils. Here we used a large-scale precipitation manipulation (+18%, \uffe2\uff88\uff9250%, or ambient) in a pi\uffc3\uffb1on-juniper woodland ( Pinus edulis-Juniperus monosperma ) to investigate how changes in precipitation amounts altered soil microbial communities as well as what role seasonal variation in rainfall and plant composition played in the microbial community response. Seasonal variability in precipitation had a larger role in determining the composition of soil microbial communities in 2008 than the direct effect of the experimental precipitation treatments. Bacterial and fungal communities in the dry, relatively moisture-limited premonsoon season were compositionally distinct from communities in the monsoon season, when soil moisture levels and periodicity varied more widely across treatments. Fungal abundance in the drought plots during the dry premonsoon season was particularly low and was 4.7 times greater upon soil wet-up in the monsoon season, suggesting that soil fungi were water limited in the driest plots, which may result in a decrease in fungal degradation of carbon substrates. Additionally, we found that both bacterial and fungal communities beneath pi\uffc3\uffb1on pine and juniper were distinct, suggesting that microbial functions beneath these trees are different. We conclude that predicting the response of microbial communities to climate change is highly dependent on seasonal dynamics, background climatic variability, and the composition of the associated aboveground community.

", "keywords": ["Bacteria", "Rain", "Fungi", "04 agricultural and veterinary sciences", "15. Life on land", "Pinus", "Biota", "6. Clean water", "13. Climate action", "Juniperus", "0401 agriculture", " forestry", " and fisheries", "Seasons", "Desert Climate", "Ecosystem", "Soil Microbiology"]}, "links": [{"href": "https://doi.org/10.1128/aem.02050-12"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.02050-12", "name": "item", "description": "10.1128/aem.02050-12", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.02050-12"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-12-15T00:00:00Z"}}, {"id": "10.1128/aem.02218-17", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2017-11-27", "title": "Impact of Peat Mining and Restoration on Methane Turnover Potential and Methane-Cycling Microorganisms in a Northern Bog", "description": "ABSTRACT

Ombrotrophic peatlands are a recognized global carbon reservoir. Without restoration and peat regrowth, harvested peatlands are dramatically altered, impairing their carbon sink function, with consequences for methane turnover. Previous studies determined the impact of commercial mining on the physicochemical properties of peat and the effects on methane turnover. However, the response of the underlying microbial communities catalyzing methane production and oxidation have so far received little attention. We hypothesize that with the return of Sphagnum spp. postharvest, methane turnover potential and the corresponding microbial communities will converge in a natural and restored peatland. To address our hypothesis, we determined the potential methane production and oxidation rates in natural (as a reference), actively mined, abandoned, and restored peatlands over two consecutive years. In all sites, the methanogenic and methanotrophic population sizes were enumerated using quantitative PCR (qPCR) assays targeting the mcrA and pmoA genes, respectively. Shifts in the community composition were determined using Illumina MiSeq sequencing of the mcrA gene and a pmoA -based terminal restriction fragment length polymorphism (t-RFLP) analysis, complemented by cloning and sequence analysis of the mmoX gene. Peat mining adversely affected methane turnover potential, but the rates recovered in the restored site. The recovery in potential activity was reflected in the methanogenic and methanotrophic abundances. However, the microbial community composition was altered, being more pronounced for the methanotrophs. Overall, we observed a lag between the recovery of the methanogenic/methanotrophic activity and the return of the corresponding microbial communities, suggesting that a longer duration (>15 years) is needed to reverse mining-induced effects on the methane-cycling microbial communities.

IMPORTANCE Ombrotrophic peatlands are a crucial carbon sink, but this environment is also a source of methane, an important greenhouse gas. Methane emission in peatlands is regulated by methane production and oxidation catalyzed by methanogens and methanotrophs, respectively. Methane-cycling microbial communities have been documented in natural peatlands. However, less is known of their response to peat mining and of the recovery of the community after restoration. Mining exerts an adverse impact on potential methane production and oxidation rates and on methanogenic and methanotrophic population abundances. Peat mining also induced a shift in the methane-cycling microbial community composition. Nevertheless, with the return of Sphagnum spp. in the restored site after 15 years, methanogenic and methanotrophic activity and population abundance recovered well. The recovery, however, was not fully reflected in the community composition, suggesting that >15 years are needed to reverse mining-induced effects.

", "keywords": ["0301 basic medicine", "570", "oxidation", "hiili", "ta1172", "Euryarchaeota", "630", "Mining", "Soil", "03 medical and health sciences", "Sphagnum", "Bacterial Proteins", "Nitrogen Fixation", "Sphagnopsida", "14. Life underwater", "ennallistaminen", "turvemaat", "Ecosystem", "Phylogeny", "Soil Microbiology", "0303 health sciences", "nifH", "methane", "Microbiota", "ta1182", "land use", "methanogenesis", "15. Life on land", "Carbon", "kasvihuonekaasup\u00e4\u00e4st\u00f6t", "nitrogen fixation", "13. Climate action", "international", "Wetlands", "Oxygenases", "ta1181", "Methane", "Oxidation-Reduction"]}, "links": [{"href": "https://journals.asm.org/doi/pdf/10.1128/AEM.02218-17"}, {"href": "https://doi.org/10.1128/aem.02218-17"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.02218-17", "name": "item", "description": "10.1128/aem.02218-17", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.02218-17"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-02-01T00:00:00Z"}}, {"id": "10.1128/aem.02388-19", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:30Z", "type": "Journal Article", "created": "2020-02-20", "title": "Inhibition of Ammonia Monooxygenase from Ammonia-Oxidizing Archaea by Linear and Aromatic Alkynes", "description": "

Archaeal and bacterial ammonia oxidizers (AOA and AOB, respectively) initiate nitrification by oxidizing ammonia to hydroxylamine, a reaction catalyzed by ammonia monooxygenase (AMO). AMO enzyme is difficult to purify in its active form, and its structure and biochemistry remain largely unexplored. The bacterial AMO and the closely related particulate methane monooxygenase (pMMO) have a broad range of hydrocarbon cooxidation substrates. This study provides insights into the AMO of previously unstudied archaeal genera, by comparing the response of the archaeal AMO, a bacterial AMO, and pMMO to inhibition by linear 1-alkynes and the aromatic alkyne, phenylacetylene. Reduced sensitivity to inhibition by larger alkynes suggests that the archaeal AMO has a narrower hydrocarbon substrate range than the bacterial AMO, as previously reported for other genera of AOA. Phenylacetylene inhibited the archaeal and bacterial AMOs at different thresholds and by different mechanisms of inhibition, highlighting structural differences between the two forms of monooxygenase.

", "keywords": ["0301 basic medicine", "03 medical and health sciences", "Ammonia", "Alkynes", "Environmental Microbiology", "Oxidoreductases", "Archaea"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/74406/2/Accepted_Manuscript.pdf"}, {"href": "https://ueaeprints.uea.ac.uk/id/eprint/74406/8/Published_Version.pdf"}, {"href": "https://journals.asm.org/doi/pdf/10.1128/AEM.02388-19"}, {"href": "https://doi.org/10.1128/aem.02388-19"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.02388-19", "name": "item", "description": "10.1128/aem.02388-19", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.02388-19"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-17T00:00:00Z"}}, {"id": "10.1128/aem.69.3.1800-1809.2003", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:31Z", "type": "Journal Article", "created": "2003-03-06", "title": "Soil Type Is The Primary Determinant Of The Composition Of The Total And Active Bacterial Communities In Arable Soils", "description": "ABSTRACT

Degradation of agricultural land and the resulting loss of soil biodiversity and productivity are of great concern. Land-use management practices can be used to ameliorate such degradation. The soil bacterial communities at three separate arable farms in eastern England, with different farm management practices, were investigated by using a polyphasic approach combining traditional soil analyses, physiological analysis, and nucleic acid profiling. Organic farming did not necessarily result in elevated organic matter levels; instead, a strong association with increased nitrate availability was apparent. Ordination of the physiological (BIOLOG) data separated the soil bacterial communities into two clusters, determined by soil type. Denaturing gradient gel electrophoresis and terminal restriction fragment length polymorphism analyses of 16S ribosomal DNA identified three bacterial communities largely on the basis of soil type but with discrimination for pea cropping. Five fields from geographically distinct soils, with different cropping regimens, produced highly similar profiles. The active communities (16S rRNA) were further discriminated by farm location and, to some degree, by land-use practices. The results of this investigation indicated that soil type was the key factor determining bacterial community composition in these arable soils. Leguminous crops on particular soil types had a positive effect upon organic matter levels and resulted in small changes in the active bacterial population. The active population was therefore more indicative of short-term management changes.

", "keywords": ["Polymerase Chain Reaction", "geography", "630", "1000 Technology", "Soil", "soil type", "RNA", " Ribosomal", " 16S", "C500 - Microbiology", "genetic polymorphism", "soil analysis", "Bacteria (microorganisms)", "Soil Microbiology", "2. Zero hunger", "article", "Agriculture", "Fabaceae", "Biodiversity", "legume", "04 agricultural and veterinary sciences", "Bacterial Typing Techniques", "microbial community", "Polymorphism", " Restriction Fragment Length", "0605 Microbiology", "Electrophoresis", "16S", "570", "Conservation of Natural Resources", "productivity", "RNA 16S", "soil microorganism", "0600 Biological Sciences", "DNA", " Ribosomal", "0700 Agricultural And Veterinary Sciences", "controlled study", "community composition", "Polymorphism", "Pisum sativum", "Ecosystem", "Ribosomal", "nonhuman", "Bacteria", "bacterial flora", "land use", "DNA", "15. Life on land", "bacterial disease", "Restriction Fragment Length", "C180 - Ecology", "physiology", "RNA", "Soils", "0401 agriculture", " forestry", " and fisheries", "bioavailability"]}, "links": [{"href": "https://doi.org/10.1128/aem.69.3.1800-1809.2003"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.69.3.1800-1809.2003", "name": "item", "description": "10.1128/aem.69.3.1800-1809.2003", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.69.3.1800-1809.2003"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2003-03-01T00:00:00Z"}}, {"id": "10.1128/mBio.00799-17", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:31Z", "type": "Journal Article", "created": "2017-03-19", "title": "Bacterial Physiological Adaptations to Contrasting Edaphic Conditions Identified Using Landscape Scale Metagenomics", "description": "Abstract

Environmental factors relating to soil pH are widely known to be important in structuring soil bacterial communities, yet the relationship between taxonomic community composition and functional diversity remains to be determined. Here, we analyze geographically distributed soils spanning a wide pH gradient and assess the functional gene capacity within those communities using whole genome metagenomics. Low pH soils consistently had fewer taxa (lower alpha and gamma diversity), but only marginal reductions in functional alpha diversity and equivalent functional gamma diversity. However, coherent changes in the relative abundances of annotated genes between pH classes were identified; with functional profiles clustering according to pH independent of geography. Differences in gene abundances were found to reflect survival and nutrient acquisition strategies, with organic-rich acidic soils harboring a greater abundance of cation efflux pumps, C and N direct fixation systems and fermentation pathways indicative of anaerobiosis. Conversely, high pH soils possessed more direct transporter-mediated mechanisms for organic C and N substrate acquisition. These findings show that bacterial functional versatility may not be constrained by taxonomy, and we further identify the range of physiological adaptations required to exist in soils of varying nutrient availability and edaphic conditions.

", "keywords": ["Q Science", "0301 basic medicine", "330", "Supplementary Data", "ecophysiology", "Ecophysiology", "NE/E006353/1", "Bacterial Physiological Phenomena", "Microbiology", "Soil", "03 medical and health sciences", "Virology", "European Commission", "Ecosystem", "Phylogeny", "Soil Microbiology", "2. Zero hunger", "655240", "metagenomics", "0303 health sciences", "Bacteria", "Natural Environment Research Council (NERC)", "Q", "NE/M017125/1", "Biodiversity", "Hydrogen-Ion Concentration", "15. Life on land", "Adaptation", " Physiological", "soil microbiology", "QR1-502", "United Kingdom", "3. Good health", "Soil microbiology", "Metagenomics", "Genome", " Bacterial", "Research Article"]}, "links": [{"href": "https://www.biorxiv.org/content/10.1101/117887v1.full.pdf"}, {"href": "https://journals.asm.org/doi/pdf/10.1128/mBio.00799-17"}, {"href": "https://doi.org/10.1128/mBio.00799-17"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/mBio", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/mBio.00799-17", "name": "item", "description": "10.1128/mBio.00799-17", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/mBio.00799-17"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-03-18T00:00:00Z"}}, {"id": "10.3389/fmicb.2016.01446", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:22:18Z", "type": "Journal Article", "created": "2016-09-14", "description": "Soil management is fundamental to all agricultural systems and fertilization practices have contributed substantially to the impressive increases in food production. Despite the pivotal role of soil microorganisms in agro-ecosystems, we still have a limited understanding of the complex response of the soil microbiota to organic and mineral fertilization in the very long-term. Here, we report the effects of different fertilization regimes (mineral, organic and combined mineral and organic fertilization), carried out for more than a century, on the structure and activity of the soil microbiome. Organic matter content, nutrient concentrations, and microbial biomass carbon were significantly increased by mineral, and even more strongly by organic fertilization. Pyrosequencing revealed significant differences between the structures of bacterial and fungal soil communities associated to each fertilization regime. Organic fertilization increased bacterial diversity, and stimulated microbial groups (Firmicutes, Proteobacteria, and Zygomycota) that are known to prefer nutrient-rich environments, and that are involved in the degradation of complex organic compounds. In contrast, soils not receiving manure harbored distinct microbial communities enriched in oligotrophic organisms adapted to nutrient-limited environments, as Acidobacteria. The fertilization regime also affected the relative abundances of plant beneficial and detrimental microbial taxa, which may influence productivity and stability of the agroecosystem. As expected, the activity of microbial exoenzymes involved in carbon, nitrogen, and phosphorous mineralization were enhanced by both types of fertilization. However, in contrast to comparable studies, the highest chitinase and phosphatase activities were observed in the solely mineral fertilized soil. Interestingly, these two enzymes showed also a particular high biomass-specific activities and a strong negative relation with soil pH. As many soil parameters are known to change slowly, the particularity of unchanged fertilization treatments since 1902 allows a profound assessment of linkages between management and abiotic as well as biotic soil parameters. Our study revealed that pH and TOC were the majors, while nitrogen and phosphorous pools were minors, drivers for structure and activity of the soil microbial community. Due to the long-term treatments studied, our findings likely represent permanent and stable, rather than transient, responses of soil microbial communities to fertilization.", "keywords": ["Soil nutrients", "0301 basic medicine", "2. Zero hunger", "0303 health sciences", "long-term fertilization", "microbial biomass", "15. Life on land", "microbial activity", "Microbiology", "QR1-502", "03 medical and health sciences", "13. Climate action", "soil microbial communities", "soil nutrients", "454 pyrosequencing"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2016.01446"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2016.01446", "name": "item", "description": "10.3389/fmicb.2016.01446", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2016.01446"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-09-14T00:00:00Z"}}, {"id": "10.1128/aem.71.5.2713-2722.2005", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:31Z", "type": "Journal Article", "created": "2005-05-03", "title": "Changes In Nitrogen-Fixing And Ammonia-Oxidizing Bacterial Communities In Soil Of A Mixed Conifer Forest After Wildfire", "description": "ABSTRACT

This study was undertaken to examine the effects of forest fire on two important groups of N-cycling bacteria in soil, the nitrogen-fixing and ammonia-oxidizing bacteria. Sequence and terminal restriction fragment length polymorphism (T-RFLP) analysis of nifH and amoA PCR amplicons was performed on DNA samples from unburned, moderately burned, and severely burned soils of a mixed conifer forest. PCR results indicated that the soil biomass and proportion of nitrogen-fixing and ammonia-oxidizing species was less in soil from the fire-impacted sites than from the unburned sites. The number of dominant nifH sequence types was greater in fire-impacted soils, and nifH sequences that were most closely related to those from the spore-forming taxa Clostridium and Paenibacillus were more abundant in the burned soils. In T-RFLP patterns of the ammonia-oxidizing community, terminal restriction fragments (TRFs) representing amoA cluster 1, 2, or 4 Nitrosospira spp. were dominant (80 to 90%) in unburned soils, while TRFs representing amoA cluster 3A Nitrosospira spp. dominated (65 to 95%) in fire-impacted soils. The dominance of amoA cluster 3A Nitrosospira spp. sequence types was positively correlated with soil pH (5.6 to 7.5) and NH 3 -N levels (0.002 to 0.976 ppm), both of which were higher in burned soils. The decreased microbial biomass and shift in nitrogen-fixing and ammonia-oxidizing communities were still evident in fire-impacted soils collected 14 months after the fire.

", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Bacteria", "Base Sequence", "Molecular Sequence Data", "15. Life on land", "Polymerase Chain Reaction", "Fires", "Trees", "Soil", "03 medical and health sciences", "Ammonia", "Nitrogen Fixation", "Oxidoreductases", "Oxidation-Reduction", "Polymorphism", " Restriction Fragment Length", "Soil Microbiology"], "contacts": [{"organization": "Chris M. Yeager, Diana E. Northup, Susan M. Barns, Cheryl R. Kuske, Christy C. Grow,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1128/aem.71.5.2713-2722.2005"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Applied%20and%20Environmental%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/aem.71.5.2713-2722.2005", "name": "item", "description": "10.1128/aem.71.5.2713-2722.2005", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/aem.71.5.2713-2722.2005"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-05-01T00:00:00Z"}}, {"id": "10.1128/msystems.00226-20", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:31Z", "type": "Journal Article", "created": "2020-04-06", "title": "Tracking the Dairy Microbiota from Farm Bulk Tank to Skimmed Milk Powder", "description": "

Microorganisms can enter and persist in dairy at several stages of the processing chain. Detection of microorganisms within dairy food processing is currently a time-consuming and often inaccurate process. This study provides evidence that high-throughput sequencing can be used as an effective tool to accurately identify microorganisms along the processing chain. In addition, it demonstrates that the populations of microbes change from raw milk to the end product. Routine implementation of high-throughput sequencing would elucidate the factors that influence population dynamics. This will enable a manufacturer to adopt control measures specific to each stage of processing and respond in an effective manner, which would ultimately lead to increased food safety and quality.

", "keywords": ["2. Zero hunger", "0301 basic medicine", "metagenomics", "0303 health sciences", "whole-milk silo", "collection tanker", "bulk tank milk", "Microbiology", "QR1-502", "3. Good health", "03 medical and health sciences", "skimmed milk silo", "skimmed milk powder", "microbiota", "dairy", "processing", "16S rRNA gene amplicon sequencing", "Research Article"]}, "links": [{"href": "https://journals.asm.org/doi/pdf/10.1128/mSystems.00226-20"}, {"href": "https://doi.org/10.1128/msystems.00226-20"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/mSystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/msystems.00226-20", "name": "item", "description": "10.1128/msystems.00226-20", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/msystems.00226-20"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-28T00:00:00Z"}}, {"id": "10.1128/msystems.00495-19", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:31Z", "type": "Journal Article", "created": "2020-04-13", "title": "Energetic Basis of Microbial Growth and Persistence in Desert Ecosystems", "description": "

Microbial life is surprisingly abundant and diverse in global desert ecosystems. In these environments, microorganisms endure a multitude of physicochemical stresses, including low water potential, carbon and nitrogen starvation, and extreme temperatures. In this review, we summarize our current understanding of the energetic mechanisms and trophic dynamics that underpin microbial function in desert ecosystems. Accumulating evidence suggests that dormancy is a common strategy that facilitates microbial survival in response to water and carbon limitation.

", "keywords": ["0301 basic medicine", "dormancy", "CYANOBACTERIAL EXOPOLYSACCHARIDES", "Trace gas", "Microbiology", "SOIL CRUSTS", "Energy reserve", "HIGH-AFFINITY", "03 medical and health sciences", "trace gas", "ATMOSPHERIC TRACE GASES", "Energetics", "energy reserve", "Dormancy", "SOR RONDANE MOUNTAINS", "Desert", "Photosynthesis", "106026 Ecosystem research", "CARBON-MONOXIDE", "desert", "ATACAMA DESERT", "energetics", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "photosynthesis", "COMMUNITY RESPONSE", "15. Life on land", "QR1-502", "106026 \u00d6kosystemforschung", "DRY SOIL", "13. Climate action", "MOLECULAR-HYDROGEN", "106022 Microbiology", "Minireview"]}, "links": [{"href": "https://journals.asm.org/doi/pdf/10.1128/mSystems.00495-19"}, {"href": "https://doi.org/10.1128/msystems.00495-19"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/mSystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/msystems.00495-19", "name": "item", "description": "10.1128/msystems.00495-19", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/msystems.00495-19"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-04-28T00:00:00Z"}}, {"id": "10.1128/msystems.00786-20", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:31Z", "type": "Journal Article", "created": "2021-01-11", "title": "Distribution of Mixotrophy and Desiccation Survival Mechanisms across Microbial Genomes in an Arid Biological Soil Crust Community", "description": "

This study represents a comprehensive community-wide genome-centered metagenome analysis of biological soil crust (BSC) communities in arid environments, providing insights into the distribution of genes encoding different energy generation mechanisms, as well as survival strategies, among populations in an arid soil ecosystem. It reveals the metabolic potential of several uncultured and previously unsequenced microbial genera, families, and orders, as well as differences in the metabolic potential between the most abundant BSC populations and their cultured relatives, highlighting once more the danger of inferring function on the basis of taxonomy.

", "keywords": ["0301 basic medicine", "BACTERIAL", "dormancy", "Survival", "RUBROBACTER-RADIOTOLERANS", "DIVERSITY", "Biological soil crust", "survival", "Microbiology", "7. Clean energy", "biological soil crust", "03 medical and health sciences", "mixotrophy", "Dormancy", "Mixotrophy", "SPORULATION", "COLORADO PLATEAU", "2. Zero hunger", "106022 Mikrobiologie", "metagenomics", "0303 health sciences", "ARTHROBACTER-RADIOTOLERANS", "15. Life on land", "XYLANOPHILUS", "QR1-502", "SP NOV.", "SURVIVAL", "106022 Microbiology", "RADIATION", "Metagenomics", "MEMBERS", "Research Article"]}, "links": [{"href": "https://journals.asm.org/doi/pdf/10.1128/mSystems.00786-20"}, {"href": "https://doi.org/10.1128/msystems.00786-20"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/mSystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/msystems.00786-20", "name": "item", "description": "10.1128/msystems.00786-20", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/msystems.00786-20"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-02-23T00:00:00Z"}}, {"id": "10.1128/msystems.00859-24", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:31Z", "type": "Journal Article", "created": "2024-09-10", "title": "A novel barcoded nanopore sequencing workflow of high-quality, full-length bacterial 16S amplicons for taxonomic annotation of bacterial isolates and complex microbial communities", "description": "ABSTRACT

Due to recent improvements, Nanopore sequencing has become a promising method for experiments relying on amplicon sequencing. We describe a flexible workflow to generate and annotate high-quality, full-length 16S rDNA amplicons. We evaluated it for two applications, namely, (i) identification of bacterial isolates and (ii) species-level profiling of microbial communities. We assessed the identification of single bacterial isolates by sequencing, using a set of barcoded full-length 16S rRNA gene primer pairs (pair A), on 47 isolates encompassing multiple genera and compared those results with matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS)-based identification. Species-level community profiling was tested with two sets of barcoded full-length 16S primer pairs (A and B) and compared to the results obtained with shotgun Illumina sequencing using 27 stool samples. We developed a Nextflow pipeline to retain high-quality reads and taxonomically annotate them. We found high agreement between our workflow and MALDI-TOF data for isolate identification (positive predictive value = 0.90, Cram\uffc3\uffa9r\uffe2\uff80\uff99s V = 0.857, and Theil\uffe2\uff80\uff99s U = 0.316). For species-level community profiling, we found strong correlations ( r s > 0.6) of alpha diversity indices between the two primer sets and Illumina sequencing. At the community level, we found significant but small differences when comparing sequencing techniques. Finally, we found a moderate to strong correlation when comparing the relative abundances of individual species (average r s = 0.6 and 0.533 for primers A and B). Despite identified shortcomings, the proposed workflow enabled accurate identification of single bacterial isolates and prominent features in microbial communities, making it a worthwhile alternative to MALDI-TOF MS and Illumina sequencing.

IMPORTANCE

A quick, robust, simple, and cost-effective method to identify bacterial isolates and communities in each sample is indispensable in the fields of microbiology and infection biology. Recent technological advances in Oxford Nanopore Technologies sequencing make this technique an attractive option considering the adaptability, portability, and cost-effectiveness of the platform, even with small sequencing batches. Here, we validated a flexible workflow to identify bacterial isolates and characterize bacterial communities using the Oxford Nanopore Technologies sequencing platform combined with the most recent v14 chemistry kits. For bacterial isolates, we compared our nanopore-based approach to matrix-assisted laser desorption ionization-time of flight mass spectrometry-based identification. For species-level profiling of complex bacterial communities, we compared our nanopore-based approach to Illumina shotgun sequencing. For reproducibility purposes, we wrapped the code used to process the sequencing data into a ready-to-use and self-contained Nextflow pipeline.

", "keywords": ["DNA", " Bacterial", "1303 Biochemistry", "gut microbiome", "610 Medicine & health", "Microbiology", "Workflow", "1311 Genetics", "RNA", " Ribosomal", " 16S", "1312 Molecular Biology", "1706 Computer Science Applications", "DNA Barcoding", " Taxonomic", "Humans", "DNA sequencing", "Bacteria", "10179 Institute of Medical Microbiology", "Microbiota", "2404 Microbiology", "1314 Physiology", "bioinformatics", "QR1-502", "Nanopore Sequencing", "1105 Ecology", " Evolution", " Behavior and Systematics", "Spectrometry", " Mass", " Matrix-Assisted Laser Desorption-Ionization", "570 Life sciences; biology", "2611 Modeling and Simulation", "Research Article"]}, "links": [{"href": "https://doi.org/10.1128/msystems.00859-24"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/mSystems", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/msystems.00859-24", "name": "item", "description": "10.1128/msystems.00859-24", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/msystems.00859-24"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-04-11T00:00:00Z"}}, {"id": "10.1130/B31375.1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:31Z", "type": "Journal Article", "created": "2016-01-09", "title": "Eolian cannibalism: Reworked loess and fluvial sediment as the main sources of the Chinese Loess Plateau", "description": "The loess and paleosol sequences of the Chinese Loess Plateau are composed of Quaternary dust, the origin of which has been the subject of considerable debate. Some recent U-Pb geochronological studies of eolian zircons have proposed the existence of two major wind pathways: from the north and northwest, through the Badan Jaran, Tengger, and Mu Us Deserts during interglacials, and from the west, through the Qaidam Basin during glacials. Others have emphasized the importance of Yellow River sediment supply in the Chinese Loess Plateau sediment budget. However, tracking dust source regions through U-Pb dating in a statistically robust manner is particularly complex given the similar age peaks in the age probability distributions of potential source regions in Central Asia. This paper presents 2410 new U-Pb ages of detrital zircons from wind-eroded strata, Quaternary eolian deposits, and modern river sands in central China in order to increase the robustness and the spatial resolution of zircon age distributions in dust source regions. We then propose a new mixture modeling technique to statistically address the contribution of these different sources to the Chinese Loess Plateau sedimentary budget. Our contribution estimates indicate that eolian supply to the Chinese Loess Plateau is dominated (60%\u201370%) by reworking of Yellow River sediment. Moreover, evidence of Qaidam Basin\u2013sourced zircons (15%\u201320%) in both loess (glacial) and paleosol (interglacial) layers corroborates the existence of an erosive wind pathway through the Qaidam Basin during glacials and implies that a substantial portion of the interglacial dust is recycled from older glacial loess. We propose that sediment reworking of Yellow River sediment and older loess deposits by wind on the Chinese Loess Plateau homogenized the eolian zircon populations toward a glacial provenance due to higher (2\u201320 times) dust accumulation rates during glacials. These findings suggest that the Chinese Loess Plateau has evolved as a more dynamic landform than previous thought, where wind deflation, fluvial input, lateral transport, and accumulation of sediment are equally important. These internal reworking effects would then significantly bias the paleoclimatic interpretations based on eolian dust properties of the Chinese Loess Plateau.", "keywords": ["550", "13. Climate action", "[SDU.STU] Sciences of the Universe [physics]/Earth Sciences", "[SDU.STU]Sciences of the Universe [physics]/Earth Sciences", "Institut f\u00fcr Geowissenschaften", "15. Life on land", "01 natural sciences", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1130/B31375.1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geological%20Society%20of%20America%20Bulletin", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1130/B31375.1", "name": "item", "description": "10.1130/B31375.1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1130/B31375.1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-01-08T00:00:00Z"}}, {"id": "10.1128/spectrum.01101-23", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:31Z", "type": "Journal Article", "created": "2023-09-19", "title": "Bacteriophages limitedly contribute to the antimicrobial resistome of microbial communities in wastewater treatment plants", "description": "ABSTRACT

Bacteriophages are known as players in the transmission of antimicrobial resistance genes (ARGs) by horizontal gene transfer. In this study, we characterized the bacteriophage community and the associated ARGs to estimate the potential for phages to spread ARGs in aquatic ecosystems analyzing the intra- and extracellular DNA isolated from two wastewater treatment plants (WWTPs) by shotgun metagenomics. We compared the phage antimicrobial resistome with the bacterial resistome and investigated the effect of the final disinfection treatment on the phage community and its resistome. Phage community was mainly composed by Siphoviridae and other members of the order Caudovirales . The final disinfection only marginally affected the composition of the phage community, and it was not possible to measure its effect on the antimicrobial resistome. Indeed, only three phage metagenome-assembled genomes (pMAGs) annotated as Siphoviridae , Padoviridae , and Myoviridae were positive for putative ARGs. Among the detected ARGs, i.e., dfr B6, rpo B mutants, and EF-Tu mutants, the first one was not annotated in the bacterial MAGs. Overall, these results demonstrate that bacteriophages limitedly contribute to the whole antimicrobial resistome. However, in order to obtain a comprehensive understanding of the antimicrobial resistome within a microbial community, the role of bacteriophages needs to be investigated.

IMPORTANCE

WWTPs are considered hotspots for the spread of ARGs by horizontal gene transfer. In this study, we evaluated the phage composition and the associated antimicrobial resistome by shotgun metagenomics of samples collected before and after the final disinfection treatment. Only a few bacteriophages carried ARGs. However, since one of the detected genes was not found in the bacterial metagenome-assembled genomes, it is necessary to investigate the phage community in order to gain a comprehensive overview of the antimicrobial resistome. This investigation could help assess the potential threats to human health.

", "keywords": ["metagenomics", "bacteriophages", "11. Sustainability", "Bacteriophages", "metagenomic assembled genomes", "antimicrobial resistance", "antimicrobial resistome", "wastewater treatment plants", "Microbiology", "6. Clean water", "QR1-502", "12. Responsible consumption", "Research Article"]}, "links": [{"href": "https://journals.asm.org/doi/pdf/10.1128/spectrum.01101-23"}, {"href": "https://doi.org/10.1128/spectrum.01101-23"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbiology%20Spectrum", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1128/spectrum.01101-23", "name": "item", "description": "10.1128/spectrum.01101-23", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1128/spectrum.01101-23"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-10-17T00:00:00Z"}}, {"id": "10.1137/18m1163919", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:32Z", "type": "Journal Article", "created": "2018-04-24", "title": "Multiscale Models of Metallic Particles in Nematic Liquid Crystals", "description": "zbMATH Open Web Interface contents unavailable due to conflicting licenses.", "keywords": ["nematic liquid crystals", "Liquid crystals", "homogenization", "General theory of rotating fluids", "approximation methods", "PDEs in connection with fluid mechanics", "530", "Homogenization in context of PDEs; PDEs in media with periodic structure", "01 natural sciences", "colloidal suspensions", "Homogenization applied to problems in fluid mechanics", "numerical methods", "0103 physical sciences", "0101 mathematics", "Statistical mechanics of random media", " disordered materials (including liquid crystals and spin glasses)"]}, "links": [{"href": "https://eprints.soton.ac.uk/419329/1/Paper.pdf"}, {"href": "https://eprints.soton.ac.uk/419329/2/Supplement.pdf"}, {"href": "https://doi.org/10.1137/18m1163919"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/SIAM%20Journal%20on%20Applied%20Mathematics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1137/18m1163919", "name": "item", "description": "10.1137/18m1163919", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1137/18m1163919"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-01-01T00:00:00Z"}}, {"id": "3133929027", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:28:37Z", "type": "Journal Article", "created": "2021-03-09", "title": "Cultivating Multidisciplinarity: Manufacturing and Sensing Challenges in Cultured Meat Production", "description": "

Meat cultivation via cellular agriculture holds great promise as a method for future food production. In theory, it is an ideal way of meat production, humane to the animals and sustainable for the environment, while keeping the same taste and nutritional values as traditional meat and having additional benefits such as controlled fat content and absence of antibiotics and hormones used in the traditional meat industry. However, in practice, there is still a number of challenges, such as those associated with the upscale of cultured meat (CM). CM food safety monitoring is a necessary factor when envisioning both the regulatory compliance and consumer acceptance. To achieve this, a multidisciplinary approach is necessary. This includes extensive development of the sensitive and specific analytical devices i.e., sensors to enable reliable food safety monitoring throughout the whole future food supply chain. In addition, advanced monitoring options can help in the further optimization of the meat cultivation which may reduce the currently still high costs of production. This review presents an overview of the sensor monitoring options for the most relevant parameters of importance for meat cultivation. Examples of the various types of sensors that can potentially be used in CM production are provided and the options for their integration into bioreactors, as well as suggestions on further improvements and more advanced integration approaches. In favor of the multidisciplinary approach, we also include an overview of the bioreactor types, scaffolding options as well as imaging techniques relevant for CM research. Furthermore, we briefly present the current status of the CM research and related regulation, societal aspects and challenges to its upscaling and commercialization.

", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "QH301-705.5", "Review", "15. Life on land", "sensors", "12. Responsible consumption", "monitoring", "bioreactor", "03 medical and health sciences", "cultivated meat", "13. Climate action", "cultured meat", "11. Sustainability", "cellular agriculture", "Biology (General)", "cultivated meat", " cultured meat", " sensors", " cellular agriculture", " modeling"]}, "links": [{"href": "https://www.mdpi.com/2079-7737/10/3/204/pdf"}, {"href": "https://doi.org/3133929027"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "3133929027", "name": "item", "description": "3133929027", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/3133929027"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-03-09T00:00:00Z"}}, {"id": "10.1139/as-2022-0011", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:32Z", "type": "Journal Article", "created": "2022-07-07", "title": "Future monitoring of litter and microplastics in the Arctic", "description": "

The Arctic Monitoring and Assessment Programme has published a plan and guidelines for the monitoring of litter and microplastics (MP) in the Arctic. Here, we look beyond suggestions for immediate monitoring and discuss challenges, opportunities, and future strategies in the long-term monitoring of litter and MP in the Arctic. Challenges are related to environmental conditions, lack of harmonization and standardization of measurements, and long-term coordinated and harmonized data storage. Furthermore, major knowledge gaps exist with regard to benchmark levels, transport, sources, and effects, which should be considered in future monitoring strategies. Their development could build on the existing infrastructure and networks established in other monitoring initiatives in the Arctic, while taking into account specific requirements for litter and MP monitoring. Knowledge existing in northern and Indigenous communities, as well as their research priorities, should be integrated into collaborative approaches. The monitoring plan for litter and MP in the Arctic allows for an ecosystem-based approach, which will improve the understanding of linkages between environmental media of the Arctic, as well as links to the global problem of litter and MP pollution.

", "keywords": ["0106 biological sciences", "0301 basic medicine", "570", "sources", "Environmental engineering", "Assessment", "Plastic", ":Building and regulation planning: 234 [VDP]", "\u00e9cosyst\u00e8me", "01 natural sciences", "Indigenous communities", "[SDU] Sciences of the Universe [physics]", "03 medical and health sciences", "VDP::Building and regulation planning: 234", "11. Sustainability", "pollution", "GE1-350", "14. Life underwater", "effects", "ecosystem", ":Bebyggelses- og reguleringsplanlegging: 234 [VDP]", "Microplastic", "TA170-171", "15. Life on land", "Pollution", "Microplast", "Environmental sciences", "[SDV] Life Sciences [q-bio]", "13. Climate action", "Debris", "transport pathways", "VDP::Bebyggelses- og reguleringsplanlegging: 234"]}, "links": [{"href": "https://iris.cnr.it/bitstream/20.500.14243/536965/2/provencher-et-al-2022-future-monitoring-of-litter-and-microplastics-in-the-arctic-challenges-opportunities-and.pdf"}, {"href": "https://iris.cnr.it/bitstream/20.500.14243/420057/1/prod_477586-doc_195419.pdf"}, {"href": "https://cdnsciencepub.com/doi/pdf/10.1139/as-2022-0011"}, {"href": "https://doi.org/10.1139/as-2022-0011"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Arctic%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1139/as-2022-0011", "name": "item", "description": "10.1139/as-2022-0011", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1139/as-2022-0011"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-03-01T00:00:00Z"}}, {"id": "10.1139/as-2021-0059", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:32Z", "type": "Journal Article", "created": "2022-03-15", "title": "An ecosystem-scale litter and microplastic monitoring plan under the Arctic Monitoring and Assessment Programme (AMAP)", "description": "

Lack of knowledge on levels and trends of litter and microplastics in the Arctic, is limiting our understanding of the sources, transport, fate, and effects is hampering global activities aimed at reducing litter and microplastics in the environment. To obtain a holistic view to managing litter and microplastics in the Arctic, we considered the current state of knowledge and methods for litter and microplastics monitoring in eleven environmental compartments representing the marine, freshwater, terrestrial, and atmospheric environments. Based on available harmonized methods, and existing data in the Arctic, we recommend prioritization of implementing litter and microplastics monitoring in the Arctic in four Priority 1 compartments\uffe2\uff80\uff94water, aquatic sediments, shorelines, and seabirds. One or several of these compartments should be monitored to provide benchmark data for litter and microplastics in the Arctic and, in the future, data on spatial and temporal trends. For the other environmental compartments, methods should be refined for future sources and surveillance monitoring, as well as monitoring of effects. Implementation of the monitoring activities should include community-based local components where possible. While organized as national and regional programs, monitoring of litter and microplastics in the Arctic should be coordinated, with a view to future pan-Arctic assessments.

", "keywords": ["Monitoring", "spatial and temporal trends", "Arctique", "Spatial and temporal trends", "Environmental engineering", "02 engineering and technology", "TA170-171", "01 natural sciences", "630", "baseline", "Environmental sciences", "monitoring", "Arctic", "Baseline", "13. Climate action", "0103 physical sciences", "GE1-350", "Debris", "14. Life underwater", "0210 nano-technology", "debris"]}, "links": [{"href": "https://cdnsciencepub.com/doi/pdf/10.1139/as-2021-0059"}, {"href": "https://doi.org/10.1139/as-2021-0059"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Arctic%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1139/as-2021-0059", "name": "item", "description": "10.1139/as-2021-0059", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1139/as-2021-0059"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-03-15T00:00:00Z"}}, {"id": "10.1139/as-2022-0006", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:32Z", "type": "Journal Article", "created": "2022-07-04", "title": "Monitoring guidelines for polymer identification, quality assurance/quality control (QA/QC) and data reporting for monitoring of microplastics in the Arctic environment", "description": "

The pollution of the environment with plastics is of growing concern worldwide, including the Arctic region. While larger plastic pieces are a visible pollution issue, smaller microplastics are not visible with the naked eye. These particles are available for interaction by Arctic biota and have become a concern for animal and human health. The determination of microplastic properties includes several methodological steps, i.e., sampling, extraction, quantification, and chemical identification. This review discusses suitable analytical tools for the identification, quantification, and characterization of microplastics in the context of monitoring in the Arctic. It further addresses quality assurance and quality control (QA/QC), which is particularly important for the determination of microplastic in the Arctic, as both contamination and analyte losses can occur. It presents specific QA/QC measures for sampling procedures and for the handling of samples in the laboratory, either on land or on ship, and considering the small size of microplastics as well as the high risk of contamination. The review depicts which data should be mandatory to report, thereby supporting a framework for harmonized data reporting.

", "keywords": [":Analytisk kjemi: 445 [VDP]", "0211 other engineering and technologies", "Environmental engineering", "QA/QC", "02 engineering and technology", "Massespektrografi", "01 natural sciences", "[SDU] Sciences of the Universe [physics]", ":Analytical chemistry: 445 [VDP]", "Arctic", "VDP::Analytical chemistry: 445", "GE1-350", "14. Life underwater", "QA", "Raman", "QC", "0105 earth and related environmental sciences", "reporting", "Mass spectrometry", "TED-GC/MS", "TED-GC", "py-GC/MS", "Microplastic", "py-GC", "Fourier transform infrared spectroscopy", "MS", "VDP::Analytisk kjemi: 445", "TA170-171", "Microplast", "620", "Environmental sciences", "[SDV] Life Sciences [q-bio]", "monitoring", "FTIR", "13. Climate action", "microscopy", "microplastic"]}, "links": [{"href": "https://iris.cnr.it/bitstream/20.500.14243/536963/1/primpke-et-al-2022-monitoring-of-microplastic-pollution-in-the-arctic-recent-developments-in-polymer-identification.pdf"}, {"href": "https://cdnsciencepub.com/doi/pdf/10.1139/as-2022-0006"}, {"href": "https://doi.org/10.1139/as-2022-0006"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Arctic%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1139/as-2022-0006", "name": "item", "description": "10.1139/as-2022-0006", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1139/as-2022-0006"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-03-01T00:00:00Z"}}, {"id": "10.1186/s43591-021-00004-0", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:43Z", "type": "Journal Article", "created": "2021-03-29", "title": "Microplastic fibers affect dynamics and intensity of CO2 and N2O fluxes from soil differently", "description": "Abstract

Microplastics may affect soil ecosystem functioning in critical ways, with previously documented effects including changes in soil structure and water dynamics; this suggests that microbial populations and the processes they mediate could also be affected. Given the importance for global carbon and nitrogen cycle and greenhouse warming potential, we here experimentally examined potential effects of plastic microfiber additions on CO2 and N2O greenhouse gas fluxes. We carried out a fully factorial laboratory experiment with the factors presence of microplastic fibers (0.4% w/w) and addition of urea fertilizer (100\uffe2\uff80\uff89mg\uffe2\uff80\uff89N\uffe2\uff80\uff89kg\uffe2\uff88\uff92\uffe2\uff80\uff891) using one target soil. The conditions in an intensively N-fertilized arable soil were simulated by adding biogas digestate at the beginning of the incubation to all samples. We continuously monitored CO2 and N2O emissions from soil before and after urea application using a custom-built flow-through steady-state system, and we assessed soil properties, including soil structure. Microplastics affected soil properties, notably increasing soil aggregate water-stability and pneumatic conductivity, and caused changes in the dynamics and overall level of emission of both gases, but in opposite directions: overall fluxes of CO2 were increased by microplastic presence, whereas N2O emission were decreased, a pattern that was intensified following urea addition. This divergent response is explained by effects of microplastic on soil structure, with the increased air permeability likely improving O2 supply: this will have stimulated CO2 production, since mineralization benefits from better aeration. Increased O2 would at the same time have inhibited denitrification, a process contributing to N2O emissions, thus likely explaining the decrease in the latter. Our results clearly suggest that microplastic consequences for greenhouse gas emissions should become an integral part of future impact assessments, and that to understand such responses, soil structure should be assessed.

", "keywords": ["2. Zero hunger", "Nitrous oxide", "500", "500 Naturwissenschaften und Mathematik::500 Naturwissenschaften::500 Naturwissenschaften und Mathematik", "15. Life on land", "Greenhouse gas", "01 natural sciences", "7. Clean energy", "6. Clean water", "12. Responsible consumption", "Microplastic fibers", "13. Climate action", "Carbon dioxide", " soil structure", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1186/s43591-021-00004-0.pdf"}, {"href": "https://doi.org/10.1186/s43591-021-00004-0"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microplastics%20and%20Nanoplastics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s43591-021-00004-0", "name": "item", "description": "10.1186/s43591-021-00004-0", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s43591-021-00004-0"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-09-21T00:00:00Z"}}, {"id": "10.1139/cjfr-2016-0203", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:33Z", "type": "Journal Article", "created": "2016-10-20", "title": "Douglas-fir radial growth in interior British Columbia can be linked to long-term oscillations in Pacific and Atlantic sea surface temperatures", "description": "

A major problem in modern dendrochronology is that the methods traditionally used for linking tree-ring growth data to climate records are not well suited to reconstructing low-frequency climatic variations. In this study, we explored the alternative ensemble empirical mode decomposition (EEMD) to detrend tree-ring records and extract climate signals without removing low-frequency information. Tree cores of Pseudotsuga menziesii var. glauca (Mayr.) Franco were examined in a semi-arid forest in southern interior British Columbia, western Canada. Ring width data were decomposed into five oscillatory components (intrinsic mode functions, IMFs) of increasingly longer periodicities. IMF 1 was considered white noise, IMF 2 was used to create the first diameter growth index (DGI-1), and IMF 3 and IMF 4 were combined to create the second diameter growth index (DGI-2), whereas IMF 5 and the residual term together were considered as the trend term. The highest significant cross-correlations between DGI-1 and the NAOAugust, NI\uffc3\uff91O12May, and PDOJanuary indices were found at 1-year lags. DGI-2 had positive and persistent correlations with NAOJune and PDOMay at 0- to 3-year lags and with NAOMay at 2- and 3-year lags. Our results indicate that periods of slow growth in the tree-ring record matched periods of drought in the North American Pacific Northwest. Such water-limiting conditions are likely caused by oscillatory patterns in the Pacific Ocean sea surface temperatures that influence precipitation in the Pacific Northwest. These drought events are likely exacerbated by changes in winter precipitation (snowpack) related to oscillations of the Atlantic Ocean sea surface temperatures, highlighting the ecological effects of both oceans on terrestrial ecosystems. Such relationships could not be easily found by traditional tree-ring analyses that remove some of the low-frequency signal, and therefore, we suggest EEMD as an additional tool to establishing tree growth \uffe2\uff80\uff93 climate relationships.

", "keywords": ["Growth-climate relationships", "Low-frequency climate oscillations", "13. Climate action", "Ensemble Empirical Mode Decomposition (EEMD)", "Dendroclimatology", "14. Life underwater", "15. Life on land", "16. Peace & justice", "Decadal climate oscillations", "01 natural sciences", "6. Clean water", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://www.nrcresearchpress.com/doi/pdf/10.1139/cjfr-2016-0203"}, {"href": "https://doi.org/10.1139/cjfr-2016-0203"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Canadian%20Journal%20of%20Forest%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1139/cjfr-2016-0203", "name": "item", "description": "10.1139/cjfr-2016-0203", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1139/cjfr-2016-0203"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-03-01T00:00:00Z"}}, {"id": "10.3389/fmicb.2018.00703", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:22:18Z", "type": "Journal Article", "created": "2018-04-30", "title": "Evaluation of Primers Targeting the Diazotroph Functional Gene and Development of NifMAP \u2013 A Bioinformatics Pipeline for Analyzing nifH Amplicon Data", "description": "Diazotrophic microorganisms introduce biologically available nitrogen (N) to the global N cycle through the activity of the nitrogenase enzyme. The genetically conserved dinitrogenase reductase (nifH) gene is phylogenetically distributed across four clusters (I-IV) and is widely used as a marker gene for N2 fixation, permitting investigators to study the genetic diversity of diazotrophs in nature and target potential participants in N2 fixation. To date there have been limited, standardized pipelines for analyzing the nifH functional gene, which is in stark contrast to the 16S rRNA gene. Here we present a bioinformatics pipeline for processing nifH amplicon datasets - NifMAP ('NifH MiSeq Illumina Amplicon Analysis Pipeline'), which as a novel aspect uses Hidden-Markov Models to filter out homologous genes to nifH. By using this pipeline, we evaluated the broadly inclusive primer pairs (Ueda19F-R6, IGK3-DVV, and F2-R6) that target the nifH gene. To evaluate any systematic biases, the nifH gene was amplified with the aforementioned primer pairs in a diverse collection of environmental samples (soils, rhizosphere and roots samples, biological soil crusts and estuarine samples), in addition to a nifH mock community consisting of six phylogenetically diverse members. We noted that all primer pairs co-amplified nifH homologs to varying degrees; up to 90% of the amplicons were nifH homologs with IGK3-DVV in some samples (rhizosphere and roots from tall oat-grass). In regards to specificity, we observed some degree of bias across the primer pairs. For example, primer pair F2-R6 discriminated against cyanobacteria (amongst others), yet captured many sequences from subclusters IIIE and IIIL-N. These aforementioned subclusters were largely missing by the primer pair IGK3-DVV, which also tended to discriminate against Alphaproteobacteria, but amplified sequences within clusters IIIC (affiliated with Clostridia) and clusters IVB and IVC. Primer pair Ueda19F-R6 exhibited the least bias and successfully captured diazotrophs in cluster I and subclusters IIIE, IIIL, IIIM, and IIIN, but tended to discriminate against Firmicutes and subcluster IIIC. Taken together, our newly established bioinformatics pipeline, NifMAP, along with our systematic evaluations of nifH primer pairs permit more robust, high-throughput investigations of diazotrophs in diverse environments.", "keywords": ["0301 basic medicine", "DIVERSITY", "nifH gene", "Microbiology", "03 medical and health sciences", "NifMAP", "Nitrogen fixation", "PARTICULATE METHANE MONOOXYGENASE", "MOLYBDENUM-NITROGENASE", "Primer evaluation", "MICROORGANISMS", "NifH gene", "2. Zero hunger", "106022 Mikrobiologie", "0303 health sciences", "SEQUENCES", "GROUP-IV NITROGENASE", "AMPLIFICATION", "PERFORMANCE", "16. Peace & justice", "QR1-502", "primer evaluation", "nitrogen fixation", "106022 Microbiology", "COMMUNITIES", "N-2 FIXATION", "Illumina amplicon sequencing"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2018.00703"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2018.00703", "name": "item", "description": "10.3389/fmicb.2018.00703", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2018.00703"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-04-30T00:00:00Z"}}, {"id": "10.1139/cjss-2018-0008", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:33Z", "type": "Journal Article", "created": "2018-06-13", "title": "Carbon Allocation And Fate In Paddy Soil Depending On Phosphorus Fertilization And Water Management: Results Of C-13 Continuous Labelling Of Rice", "description": "

We grew rice in phosphorus (P) deficient subtropical paddy soil in a field study and used 13CO2 continuous labelling to investigate photosynthetic carbon (C) partitioning and allocation under FLOOD versus WET/DRY conditions, with and without P fertilization (80\uffc2\uffa0mg P kg\uffe2\uff88\uff921). The plants and soil were sampled after each of three WET/DRY cycles to determine 13C allocation in above- and belowground plant biomass, microbial biomass, the rhizosphere, and bulk soil. Irrespective of water management, P-fertilized plants had higher biomass and P content and more total 13C in the rice-soil system, especially the 13C incorporation into the shoots (51%\uffe2\uff80\uff9396%), than samples without P fertilization. Root and bulk-soil 13C were largely independent of both P fertilization and water management. However, by the third sampling, P fertilization had increased the amount of 13C and microbial biomass 13C in the rhizosphere soil (RS) by 28% (WET/DRY) and 95% (FLOOD), and by 47% (WET/DRY) and 50% (FLOOD), respectively. The WET/DRY condition had significantly higher microbial biomass and 13C contents than FLOOD condition only in the RS. These results indicate that a well-established aboveground plant biomass following P fertilization is required to increase belowground C allocation. Thus, WET/DRY conditions, like FLOOD conditions, can provide moisture sufficient for unhindered P availability in rice-paddy system.

", "keywords": ["2. Zero hunger", "570", "330", "Microbial biomass", "04 agricultural and veterinary sciences", "15. Life on land", "01 natural sciences", "630", "6. Clean water", "Water management", "Paddy soil", "0401 agriculture", " forestry", " and fisheries", "14. Life underwater", "Rice photosynthesised C", "Phosphorus deficiency", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1139/cjss-2018-0008"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Canadian%20Journal%20of%20Soil%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1139/cjss-2018-0008", "name": "item", "description": "10.1139/cjss-2018-0008", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1139/cjss-2018-0008"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-09-01T00:00:00Z"}}, {"id": "10.1186/s40168-018-0607-0", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:42Z", "type": "Journal Article", "created": "2018-12-07", "title": "Gene probing reveals the widespread distribution, diversity and abundance of isoprene-degrading bacteria in the environment", "description": "Approximately 500\u00a0Tg of isoprene are emitted to the atmosphere annually, an amount similar to that of methane, and despite its significant effects on the climate, very little is known about the biological degradation of isoprene in the environment. Isolation and characterisation of isoprene degraders at the molecular level has allowed the development of probes targeting isoA encoding the \u03b1-subunit of the isoprene monooxygenase. This enzyme belongs to the soluble diiron centre monooxygenase family and catalyses the first step in the isoprene degradation pathway. The use of probes targeting key metabolic genes is a successful approach in molecular ecology to study specific groups of bacteria in complex environments. Here, we developed and tested a novel isoA PCR primer set to study the distribution, abundance, and diversity of isoprene degraders in a wide range of environments.The new isoA probes specifically amplified isoA genes from taxonomically diverse isoprene-degrading bacteria including members of the genera Rhodococcus, Variovorax, and Sphingopyxis. There was no cross-reactivity with genes encoding related oxygenases from non-isoprene degraders. Sequencing of isoA amplicons from DNA extracted from environmental samples enriched with isoprene revealed that most environments tested harboured a considerable variety of isoA sequences, with poplar leaf enrichments containing more phylogenetically diverse isoA genes. Quantification by qPCR using these isoA probes revealed that isoprene degraders are widespread in the phyllosphere, terrestrial, freshwater and marine environments. Specifically, soils in the vicinity of high isoprene-emitting trees contained the highest number of isoprene-degrading bacteria.This study provides the molecular ecology tools to broaden our knowledge of the distribution, abundance and diversity of isoprene degraders in the environment, which is a fundamental step necessary to assess the impact that microbes have in mitigating the effects of this important climate-active gas.", "keywords": ["0301 basic medicine", "570", "Isoprene", "Climate", "Mixed Function Oxygenases", "Microbial ecology", "Comamonadaceae", "03 medical and health sciences", "Hemiterpenes", "Bacterial Proteins", "Butadienes", "Isoprene monooxygenase", "Rhodococcus", "Gene probes", "14. Life underwater", "Phylogeny", "Soil Microbiology", "DNA Primers", "0303 health sciences", "Bacteria", "Research", "isoA", "QR100-130", "QR Microbiology", "Sequence Analysis", " DNA", "15. Life on land", "Sphingomonadaceae", "Biodegradation", " Environmental", "13. Climate action"]}, "links": [{"href": "https://ueaeprints.uea.ac.uk/id/eprint/69294/1/Published_manuscript.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1186/s40168-018-0607-0.pdf"}, {"href": "https://repository.essex.ac.uk/23630/1/s40168-018-0607-0.pdf"}, {"href": "https://doi.org/10.1186/s40168-018-0607-0"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbiome", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40168-018-0607-0", "name": "item", "description": "10.1186/s40168-018-0607-0", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40168-018-0607-0"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-12-01T00:00:00Z"}}, {"id": "10.1186/s13071-022-05581-4", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:42Z", "type": "Journal Article", "created": "2023-03-01", "title": "The pipeline for drugs for control and elimination of neglected tropical diseases: 1. Anti-infective drugs for regulatory registration", "description": "Abstract

The World Health Organization \uffe2\uff80\uff98Ending the neglect to attain the Sustainable Development Goals: A road map for neglected tropical diseases 2021\uffe2\uff80\uff932030\uffe2\uff80\uff99 outlines the targets for control and elimination of neglected tropical diseases (NTDs). New drugs are needed to achieve some of them. We are providing an overview of the pipeline for new anti-infective drugs for regulatory registration and steps to effective use for NTD control and elimination. Considering drugs approved for an NTD by at least one stringent regulatory authority: fexinidazole, included in WHO guidelines for Trypanosoma brucei gambiense African trypanosomiasis, is in development for Chagas disease. Moxidectin, registered in 2018 for treatment of individuals\uffe2\uff80\uff89\uffe2\uff89\uffa5\uffe2\uff80\uff8912\uffc2\uffa0years old with onchocerciasis, is undergoing studies to extend the indication to 4\uffe2\uff80\uff9311-year-old children and obtain additional data to inform WHO and endemic countries' decisions on moxidectin inclusion in guidelines and policies. Moxidectin is also being evaluated for other NTDs. Considering drugs in at least Phase 2 clinical development, a submission is being prepared for registration of acoziborole as an oral treatment for first and second stage T.b. gambiense African trypanosomiasis. Bedaquiline, registered for tuberculosis, is being evaluated for multibacillary leprosy. Phase 2 studies of emodepside and flubentylosin in O. volvulus-infected individuals are ongoing; studies for Trichuris trichuria and hookworm are planned. A trial of fosravuconazole in Madurella mycetomatis-infected patients is ongoing. JNJ-64281802 is undergoing Phase 2 trials for reducing dengue viral load. Studies are ongoing or planned to evaluate oxantel pamoate for onchocerciasis and soil-transmitted helminths, including Trichuris, and oxfendazole for onchocerciasis, Fasciola hepatica, Taenia solium cysticercosis, Echinococcus granulosus and soil-transmitted helminths, including Trichuris. Additional steps from first registration to effective use for NTD control and elimination include country registrations, possibly additional studies to inform WHO guidelines and country policies, and implementation research to address barriers to effective use of new drugs. Relative to the number of people suffering from NTDs, the pipeline is small. Close collaboration and exchange of experience among all stakeholders developing drugs for NTDs may increase the probability that the current pipeline will translate into new drugs effectively implemented in affected countries.

Graphical AbstractThere is an urgent need to ensure that food production is maintained in response to either a reduction in use or lack of availability of natural resources. To this end, several strategies have been investigated to determine which agronomic approaches may improve crop yields under conditions of reduced water and/or nutrients provision, with special attention upon nitrogen (N) and phosphorus (P). New technologies and practices have been developed for key commercial crops, such as tomatoes. However, few of these are widely adopted in the field and evidence of their value in this production setting is limited.

Methods

This protocol sets out a systematic map methodology that aims to provide a coherent synthesis of the available evidence among the literature on the techniques and management approaches that may ensure the productivity of field-grown tomatoes under conditions of water-, N- and/or P-deficits, either as single or combined stresses. To conduct the literature search, a search strategy was produced to define the scope of the systematic map and to allow reproducibility of the approach. A list of published and unpublished sources of literature were selected and a preliminary trial identified best-fit-for-purpose search-terms and -strings. A literature screening process was set with consistency checks amongst reviewers at the title, abstract and full text screening stages. A series of eligibility criteria were defined to ensure objectivity and consistency in the selection of studies that are best suited to address the research question of the systematic map. In addition, a coding strategy was designed to set the means for meta-data extraction out from the literature for review. A drafted structured questionnaire will serve as the base for collating the meta-data to produce a database where variables will be queried for the evidence synthesis. This work is expected to inform stakeholders, researchers and policy makers regarding the extent and nature of the existing evidence base, and so serve as a basis by-which specific approaches may be highlighted as potential focal-areas in future.

", "keywords": ["0106 biological sciences", "2. Zero hunger", "Resource use-efficiency", "Drought resistance", "04 agricultural and veterinary sciences", "Abiotic stres", "15. Life on land", "Abiotic stress", "01 natural sciences", "Combined stress-tolerance", "Fertilisation", "Environmental sciences", "Climate change resilience", "0401 agriculture", " forestry", " and fisheries", "GE1-350"]}, "links": [{"href": "https://link.springer.com/content/pdf/10.1186/s13750-019-0172-4.pdf"}, {"href": "https://doi.org/10.1186/s13750-019-0172-4"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Evidence", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s13750-019-0172-4", "name": "item", "description": "10.1186/s13750-019-0172-4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s13750-019-0172-4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-07-12T00:00:00Z"}}, {"id": "10.1186/s40538-025-00729-7", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:43Z", "type": "Journal Article", "created": "2025-01-17", "title": "The global energy challenge: second-generation feedstocks on marginal lands for a sustainable biofuel production", "description": "Abstract As the global population continues to grow, so does the demand for energy resources. As a consequence, using renewable energy sources as an alternative to fossil fuels has become mandatory to reduce the environmental footprint of the energy sector. Biofuels represent a renewable source of energy, but their production has raised concerns regarding their possible impacts on food security. Indeed, the current biofuel production primarily relies on food crops and arable lands. That is in conflict with the need to produce more food for an increasing world population. To overcome this incongruence, it is proposed to cultivate second-generation biofuel crops on marginal lands, since this option could bring benefits in terms of food security and sustainability. Based on the scientific literature, we addressed the following critical points: (i) whether marginal land worldwide can be considered a reasonable alternative to arable lands for biofuel production; (ii) evaluate the sustainability of biofuel production with respect to unintended negative consequences of crop cultivation such as indirect land use change, social insecurity and loss of biodiversity. It was concluded that the amount of land for growing plants can possibly sustain both food and biofuel production if marginal land are included. In this context, it becomes a priority to select biofuel crops with high productivity on marginal lands and pronounced resilience and adaptability traits. Underutilized crops such as Carthamus tinctorius, Ricinus communis, Brassica carinata, Camelina sativa etc. may fit the purpose and may represent a valuable alternative to first-generation feedstock because they require minimal agronomical input. Using underutilized crops on marginal lands can also provide important ecological services, including improving soil fertility and water regulation, increasing biodiversity and reducing soil erosion. To fully exploit this option, it will be critical to calibrate plant growth models to estimate the potential biofuel production on marginal land from second-generation feedstock and to create tools for a more rational management of this land. Graphical abstract", "keywords": ["Life cycle assessment", "Food-fuel debate", "S", "Carthamus tinctorius", "GHG", "Agriculture", "Ricinus communis"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/1000224/1/s40538-025-00729-7.pdf"}, {"href": "https://doi.org/10.1186/s40538-025-00729-7"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Chemical%20and%20Biological%20Technologies%20in%20Agriculture", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s40538-025-00729-7", "name": "item", "description": "10.1186/s40538-025-00729-7", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s40538-025-00729-7"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-01-17T00:00:00Z"}}, {"id": "10.1155/2012/623070", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:37Z", "type": "Journal Article", "created": "2012-08-05", "title": "Environmental Impacts Of Jatropha Curcas Biodiesel In India", "description": "

In the context of energy security, rural development and climate change, India actively promotes the cultivation ofJatropha curcas, a biodiesel feedstock which has been identified as suitable for achieving the Indian target of 20% biofuel blending by 2017. In this paper, we present results concerning the range of environmental impacts of differentJatropha curcascultivation systems. Moreover, nine agronomic trials in Andhra Pradesh are analysed, in which the yield was measured as a function of different inputs such as water, fertilizer, pesticides, and arbuscular mycorrhizal fungi. Further, the environmental impact of the wholeJatropha curcasbiodiesel value chain is benchmarked with fossil diesel, following the ISO 14040/44 life cycle assessment procedure. Overall, this study shows that the use ofJatropha curcasbiodiesel generally reduces the global warming potential and the nonrenewable energy demand as compared to fossil diesel. On the other hand, the environmental impacts on acidification, ecotoxicity, eutrophication, and water depletion all showed increases. Key for reducing the environmental impact ofJatropha curcasbiodiesel is the resource efficiency during crop cultivation (especially mineral fertilizer application) and the optimal site selection of theJatropha curcasplantations.

", "keywords": ["2. Zero hunger", "Fossil Fuels", "Esterification", "Conservation of Energy Resources", "India", "Agriculture", "Jatropha", "02 engineering and technology", "Environment", "15. Life on land", "Global Warming", "7. Clean energy", "Carbon", "6. Clean water", "12. Responsible consumption", "13. Climate action", "Biofuels", "0202 electrical engineering", " electronic engineering", " information engineering", "Plant Oils", "Research Article"], "contacts": [{"organization": "Gm\u00fcnder, Simon, Singh, Reena, Pfister, Stephan; id_orcid0000-0001-8984-2041, Adheloya, Alok, Zah, Rainer,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1155/2012/623070"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Biomedicine%20and%20Biotechnology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1155/2012/623070", "name": "item", "description": "10.1155/2012/623070", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1155/2012/623070"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-01-01T00:00:00Z"}}, {"id": "10.3389/fmicb.2020.568224", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:22:19Z", "type": "Journal Article", "created": "2020-10-27", "title": "Exopolysaccharide Features Influence Growth Success in Biocrust-forming Cyanobacteria, Moving From Liquid Culture to Sand Microcosms", "description": "Land degradation in drylands is a drawback of the combined action of climate change and human activities. New techniques have been developed to induce artificial biocrusts formation as a tool for restoration of degraded drylands, and among them soils inoculation with cyanobacteria adapted to environmental stress. Improvement of soil properties by cyanobacteria inoculation is largely related to their ability to synthesize exopolysaccharides (EPS). However, cyanobacterial EPS features [amount, molecular weight (MW), composition] can change from one species to another or when grown in different conditions. We investigated the differences in growth and polysaccharidic matrix features among three common biocrust-forming cyanobacteria (Nostoc commune, Scytonema javanicum, and Phormidium ambiguum), when grown in liquid media and on sandy soil microcosms under optimal nutrient and water, in controlled laboratory conditions. We extracted and analyzed the released EPS (RPS) and sheath for the liquid cultures, and the more soluble or loosely-bound (LB) and the more condensed or tightly-bound (TB) soil EPS fractions for the sandy soil microcosms. In liquid culture, P. ambiguum showed the greatest growth and EPS release. In contrast, on the sandy soil, S. javanicum showed the highest growth and highest LB-EPS content. N. commune showed no relevant growth after its inoculation of the sandy soil. A difference was observed in terms of MW distribution, showing that the higher MW of the polymers produced by P. ambiguum and S. javanicum compared to the polymers produced by N. commune, could have had a positive effect on growth for the first two organisms when inoculated on the sandy soil. We also observed how both RPS and sheath fractions reflected in the composition of the soil TB-EPS fraction, indicating the role in soil stabilization of both the released and the cell attached EPS. Our results indicate that the features of the polysaccharidic matrix produced by different cyanobacteria can influence their growth success in soil. These results are of great relevance when selecting suitable candidates for large-scale cyanobacteria applications in soil restoration.", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "EPS monosaccharidic composition", "15. Life on land", "sand inoculation", "semiarid soil", "Microbiology", "QR1-502", "6. Clean water", "03 medical and health sciences", "EPS molecular weight distribution", "13. Climate action", "cyanobacteria liquid culture", "cyanobacteria liquid culture", " sand inoculation", " sandy soil microcosms", " EPS monosaccharidic composition", " EPS molecular weight distribution", " semiarid soil", "sandy soil microcosms"]}, "links": [{"href": "https://flore.unifi.it/bitstream/2158/1215077/2/fmicb-11-568224.pdf"}, {"href": "https://doi.org/10.3389/fmicb.2020.568224"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2020.568224", "name": "item", "description": "10.3389/fmicb.2020.568224", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2020.568224"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-10-27T00:00:00Z"}}, {"id": "10.1186/s13570-014-0018-1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:42Z", "type": "Journal Article", "created": "2014-11-24", "title": "Control Of Bush Encroachment In Borana Zone Of Southern Ethiopia: Effects Of Different Control Techniques On Rangeland Vegetation And Tick Populations", "description": "Open AccessA study on effects of bush encroachment control techniques on rangeland productivity and tick population dynamics was conducted in Arero district of Borana zone, southern Ethiopia, for three consecutive years. The study targeted two main and dominant encroaching bush species in Borana rangeland, Acacia drepanolobium and Acacia mellifera, and their effects on some vegetation attributes and tick population dynamics. A hectare of rangeland encroached by these two acacia species was replicated/divided into three plots, and each plot was subdivided into five sub-plots to receive five treatments: cutting at 0.5 m above ground and pouring kerosene on stumps (T1), cutting at 0.5 m above ground and debarking the stumps down into the soil surface (T2), cutting at 0.5 m above ground alone (T3), cutting at 0.5 m above ground and dissecting the stumps (T4) and control (T5). Data on basal and litter covers, soil erosion and compaction, dead and re-sprouted encroaching tree/shrub species and nymph- and adult-stage tick populations were collected before and after treatment applications. The applied treatments significantly influenced (p < 0.05) basal cover, nymph- and adult-stage tick population and the two encroaching tree species. The results of this study showed that T3 and T2 were good in controlling A. drepanolobium in that order. T4 and T2 had a significant effect in controlling A. mellifera in their order. Controlling bush encroachment had also a positive effect in eradicating the tick population. The most dominant grass and non-grass species observed after the control actions were Cenchrus ciliaris, Chrysopogon aucheri, Abutilon hirtum, Pennisetum mezianum, Dyschoriste hildebrandtii, Zaleya pentandra and Eragrostis papposa. Therefore, controlling encroaching tree/shrub species had created a conducive grazing area with palatable herbaceous species for the livestock and unequivocally reduced tick population which play a role in reducing cattle milk production through closing off teats. The management of bush encroachment, if sustained, will contribute in stabilizing rangelands and help minimize the negative effects of feed and food crises in the future.", "keywords": ["0106 biological sciences", "Population", "Lantana", "Management", " Monitoring", " Policy and Law", "01 natural sciences", "Basal area", "Agricultural and Biological Sciences", "Rangeland Degradation", "Sociology", "Agroforestry Systems and Biodiversity Enhancement", "Rangeland Degradation and Pastoral Livelihoods", "Pathology", "Agroforestry", "Biology", "Demography", "0105 earth and related environmental sciences", "2. Zero hunger", "Ecology", "Life Sciences", "Forestry", "Factors Affecting Sagebrush Ecosystems and Wildlife Conservation", "15. Life on land", "Agronomy", "6. Clean water", "FOS: Sociology", "Shrub", "FOS: Biological sciences", "Environmental Science", "Physical Sciences", "Medicine", "Rangeland", "Vegetation (pathology)", "Tick"], "contacts": [{"organization": "Bikila Negasa, Bedasa Eba, Samuel Tuffa, Barecha Bayissa, Jaldesa Doyo, N. Van Husen,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1186/s13570-014-0018-1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Pastoralism", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s13570-014-0018-1", "name": "item", "description": "10.1186/s13570-014-0018-1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s13570-014-0018-1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-11-25T00:00:00Z"}}, {"id": "10.1139/x88-221", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:36Z", "type": "Journal Article", "created": "2007-12-19", "title": "Biomass And Nutrients In Regenerating Woody Vegetation Following Whole-Tree And Conventional Harvest In A Northern Mixed Forest", "description": "

Biomass and nutrient contents of regenerating woody plants and litter fall were measured after a northern mixed conifer\uffe2\uff80\uff93hardwood forest was harvested by conventional and whole-tree methods. Before harvest, the central Ontario study site was occupied by a 95-year-old pine (Pinusresinosa, P. strobus) and aspen (Populustremuloides, P. grandidentata) stand growing on gently rolling, gravel-free outwash sands. Four years after harvest, aspen abundance increased 100-fold in both harvested areas, with higher densities after whole-tree harvest (WTH) (4.1\uffe2\uff80\uff82stems/m2) than after conventional harvest (CH) (2.7\uffe2\uff80\uff82stems/m2). No self-thinning of aspen occurred between 2 and 4 years after harvest. Total aboveground woody biomass accumulated at 2.0\uffe2\uff80\uff82t\uffe2\uff80\uffa2ha\uffe2\uff88\uff921\uffe2\uff80\uffa2year\uffe2\uff88\uff921 in the WTH area and 1.5\uffe2\uff80\uff82t\uffe2\uff80\uffa2ha\uffe2\uff88\uff921\uffe2\uff80\uffa2year\uffe2\uff88\uff921 in the CH area; the preharvest rate was 2.0\uffe2\uff80\uff82t\uffe2\uff80\uffa2ha\uffe2\uff88\uff921\uffe2\uff80\uffa2year\uffe2\uff88\uff921. Peak autumn litter production occurred earlier in the harvested areas than in an adjacent uncut area. Cycling of N and K in litter fall returned to preharvest rates after 4 years. Cycling of Ca in litter fall was lower after WTH than after CH. Vegetation uptake of N and K (litter fall plus woody biomass) in the harvested areas in year 4 exceeded the preharvest value. Increased N accumulation in woody biomass (3.0\uffe2\uff80\uff82kg\uffe2\uff80\uffa2ha\uffe2\uff88\uff921\uffe2\uff80\uffa2year\uffe2\uff88\uff921 before harvest, 10.6\uffe2\uff80\uff82kg\uffe2\uff80\uffa2ha\uffe2\uff88\uff921\uffe2\uff80\uffa2year\uffe2\uff88\uff921 after WTH) would place a relatively greater demand on forest floor N pools in the WTH than in the CH area owing to lack of N input in logging slash. Although WTH did not reduce initial rates of biomass production, Populus spp. had lower concentrations of N, Ca, and Mg in the WTH area than in the CH area. There may be a danger that WTH on less fertile sites in the region will produce dense, unproductive aspen stands with low rates of self-thinning.

", "keywords": ["0106 biological sciences", "Spermatophyta", "Angiosperms", "Broadleaves", "Forest litter", "Microorganisms", "Coniferopsida: Gymnospermae", "Gymnosperms", "01 natural sciences", "logging", "Dicots", "pines", "nutrients", "Spermatophytes", "Natural regeneration", "Plant nutrition", "Plantae", "Forest Sciences", "Vascular Plants", "biomass", "Stand characteristics", "Salicaceae: Dicotyledones", "thinning", "Soil morphology", "Cycling", "Forestry", "Pinus Resinosa Pinus Strobus Populus Tremuloides Populus Grandidentata Forest Biomass Energy Forest Products", "Plants", "15. Life on land", "Conifers", "Angiospermae", "composition", "whole tree logging", "nutrient reserves", "natural thinning", "measurement", "ecology"], "contacts": [{"organization": "Hendrickson, O.Q.", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1139/x88-221"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Canadian%20Journal%20of%20Forest%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1139/x88-221", "name": "item", "description": "10.1139/x88-221", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1139/x88-221"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1988-11-01T00:00:00Z"}}, {"id": "10.3390/rs11091106", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:22:41Z", "type": "Journal Article", "created": "2019-05-09", "title": "Integrated Use of Satellite Remote Sensing, Artificial Neural Networks, Field Spectroscopy, and GIS in Estimating Crucial Soil Parameters in Terms of Soil Erosion", "description": "

Soil erosion is one of the main causes of soil degradation among others (salinization, compaction, reduction of organic matter, and non-point source pollution) and is a serious threat in the Mediterranean region. A number of soil properties, such as soil organic matter (SOM), soil structure, particle size, permeability, and Calcium Carbonate equivalent (CaCO3), can be the key properties for the evaluation of soil erosion. In this work, several innovative methods (satellite remote sensing, field spectroscopy, soil chemical analysis, and GIS) were investigated for their potential in monitoring SOM, CaCO3, and soil erodibility (K-factor) of the Akrotiri cape in Crete, Greece. Laboratory analysis and soil spectral reflectance in the VIS-NIR (using either Landsat 8, Sentinel-2, or field spectroscopy data) range combined with machine learning and geostatistics permitted the spatial mapping of SOM, CaCO3, and K-factor. Synergistic use of geospatial modeling based on the aforementioned soil properties and the Revised Universal Soil Loss Equation (RUSLE) erosion assessment model enabled the estimation of soil loss risk. Finally, ordinary least square regression (OLSR) and geographical weighted regression (GWR) methodologies were employed in order to assess the potential contribution of different approaches in estimating soil erosion rates. The derived maps captured successfully the SOM, the CaCO3, and the K-factor spatial distribution in the GIS environment. The results may contribute to the design of erosion best management measures and wise land use planning in the study region.

", "keywords": ["Landsat 8", "2. Zero hunger", "soil erosion", "550", "Science", "Q", "04 agricultural and veterinary sciences", "Remote sensing", "15. Life on land", "01 natural sciences", "630", "field spectroscopy", "6. Clean water", "soil erosion; remote sensing; Sentinel-2; Landsat 8; ANN; RUSLE; field spectroscopy; OLSR; GWR", "remote sensing", "Field spectroscopy", "OLSR", "13. Climate action", "Soil erosion", "0401 agriculture", " forestry", " and fisheries", "RUSLE", "Sentinel-2", "ANN", "GWR", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://www.mdpi.com/2072-4292/11/9/1106/pdf"}, {"href": "https://doi.org/10.3390/rs11091106"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Remote%20Sensing", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/rs11091106", "name": "item", "description": "10.3390/rs11091106", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/rs11091106"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-05-09T00:00:00Z"}}, {"id": "10.1139/x92-146", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:36Z", "type": "Journal Article", "created": "2009-12-18", "title": "Carbon Storage In Lake States Aspen Ecosystems", "description": "

Total ecosystem carbon in the soil and vegetation was measured for a range of aspen (Populustremuloides Michx.) ecosystems, including a chronosequence on the same soil ranging in age from 0 to 80 years. Soil carbon stayed relatively constant throughout the stand's life and was not affected by timber harvesting. Changes in ecosystem carbon closely paralleled the changes in standing biomass. Aspen grown on 40-year rotations on good soils will sequester several times as much carbon per year as old-growth forests.

", "keywords": ["Management Options", "0106 biological sciences", "Michigan", "Spermatophyta", "Angiosperms", "Broadleaves", "wisconsin", "aspen", "Minnesota", "01 natural sciences", "Dicots", "forest succession", "Spermatophytes", "Populus tremuloides", "Biomass", "Plantae", "Forest Sciences", "USA", "Vascular Plants", "Salicaceae: Dicotyledones", "carbon", "Rotation Length", "age of trees", "Forestry", "Carbon cycle", "plant succession", "Plants", "Timber Harvest", "forest ecosystem", "carbon storage", "15. Life on land", "Angiospermae", "Chronosequence Soil Carbon", "ecosystems"], "contacts": [{"organization": "Alban, David H., Perala, D.A.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1139/x92-146"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Canadian%20Journal%20of%20Forest%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1139/x92-146", "name": "item", "description": "10.1139/x92-146", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1139/x92-146"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1992-08-01T00:00:00Z"}}, {"id": "10.1145/3462203.3475916", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:37Z", "type": "Journal Article", "created": "2021-08-19", "title": "Environmental intelligence for more sustainable infrastructure investment", "description": "Intelligence is the ability to learn, understand and thus manage new or trying situations through reasoning (inferences based on facts or premises). Environmental Intelligence brings together multiple data streams (facts) from ground-based, satellite and citizen sources with cutting-edge hardware, software and analytical technology employing human reasoning and machine learning to better understand and manage the environment. The EC H2020 ReSET project (Restarting Economy in Support of Environment through Technology) funded by the European Union's Horizon 2020 FET Proactive Programme under grant agreement No 101017857, brings together environmental scientists, social scientists, informatics specialists and stakeholders from five European countries to develop state of the art investment policy support systems. These combine the best available earth observation, crowdsourced and field-monitored data with sophisticated spatial policy support systems for biophysical and social processes. Harnessing combined machine and human intelligence, we seek to to understand best-bet options for 'build back better' investments that maximise environmental, economic and employment benefits. We are working at a series of demonstration sites in Europe where 'build back better' investments are active: Thames Gateway, OxCam Arc and Strand Aldwych in UK; Carasuhat Wetlands in Romania; Castilla Leon and Rivas VaciaMadrid in Spain and Bologna in Italy. Proposed investments include urban greening and traffic management to reduce air pollution and thermal extremes (Strand Aldwych, Bologna, Rivas Vaciamadrid); Natural Flood Management (Thames Gateway, OxCam Arc, Castilla-Leon), land use zoning for low impact tourism (Carasuhat) and green-grey approaches to flood and drought management (Castilla Leon). We bring together new hardware technologies enabling low-cost, distributed, IoT environmental monitoring using the FreeStation.org platform with further developments of our widely used policy support systems CotingNature and Eco:Actuary and enhanced activity and agent-based modelling in the Metronamica modelling framework. This is to better understand current environmental conditions in the areas proposed for investment and to simulate the impact of investment alternatives (business as usual grey, blended grey-green and fully green) on environment, economy and employment in the ReSET investment policy support system. Through this work, we tackle some key challenges of operationalizing environmental intelligence discussed here: \u2022 technology as an enabler of research and innovation rather than the key focus of research \u2022 live integration of complex data streams \u2022 ensuring usability and ease of use through co-design \u2022 scalability and relevance to a range of investment types and settings \u2022 reducing costs, enabling local maintenance and ensuring accessibility and legacy", "keywords": ["330", "9. Industry and infrastructure", "Green infrastructure", "15. Life on land", "Policy support", "01 natural sciences", "7. Clean energy", "333", "12. Responsible consumption", "Nature based solutions", "13. Climate action", "11. Sustainability", "Investment", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://dl.acm.org/doi/pdf/10.1145/3462203.3475916"}, {"href": "https://doi.org/10.1145/3462203.3475916"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Proceedings%20of%20the%20Conference%20on%20Information%20Technology%20for%20Social%20Good", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1145/3462203.3475916", "name": "item", "description": "10.1145/3462203.3475916", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1145/3462203.3475916"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-09-09T00:00:00Z"}}, {"id": "10.11609/jott.3806.10.3.11432-11442", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:38Z", "type": "Journal Article", "created": "2018-03-26", "title": "Seasonal Distribution And Abundance Of Earthworms (Annelida: Oligochaeta) In Relation To The Edaphic Factors Around Udupi Power Corporation Limited (Upcl), Udupi District, Southwestern Coast Of India", "description": "

Seasonal distribution and abundance of four species of earthworms belonging to three families\uffe2\uff80\uff94Rhinodrilidae (Pontoscolex corethrurus), Megascolecidae (Megascolex konkanensis and Metaphire houlleti) and Octochaetidae (Karmiella karnatakensis)\uffe2\uff80\uff94were studied in three habitats (residential, agricultural and forest) along with edaphic factors around Udupi Power Corporation Limited (UPCL), Karnataka, India between September 2014 and August 2016.\uffc2\uffa0 Among the four species, P. corethrurus was collected throughout the year and was most abundant in residential habitats such as colacasia garden, coconut and banana pits.\uffc2\uffa0 M. konkanensis was collected from coconut plantations, banana plantations and forest soil during monsoon and post-monsoon periods.\uffc2\uffa0 M. houlleti was collected from manure heaps, coconut and banana pits of residential habitat, coconut plantations and forest soil.\uffc2\uffa0 K. karnatakensis was collected from garden soil in residential habitat during the post-monsoon period, coconut plantations and soil mixed with forest leaf litter during monsoon and post-monsoon periods.\uffc2\uffa0 The soil temperature differ significantly during different seasons in residential (P= 0.01) and agricultural (P=0.03) habitats whereas moisture shows highly significant difference in agricultural habitat (P=0.00037) during different seasons.\uffc2\uffa0 P. corethrurus showed positive correlation with organic carbon during pre-monsoon and C/N ratio during monsoon in the residential habitat.\uffc2\uffa0 It shows negative correlation with pH during the monsoon period.\uffc2\uffa0 M. houlleti showed positive correlation with organic carbon in residential habitat during the pre-monsoon and in forest habitat during monsoon periods.\uffc2\uffa0 M. konkanensis showed positive correlation with electrical conductivity in agricultural habitats during monsoon period.\uffc2\uffa0 K. karnatakensis showed positive correlation with moisture during monsoon and with C/N ratio during post-monsoon period in forest habitats.

", "keywords": ["0301 basic medicine", "0303 health sciences", "Ecology", "octochaetidae", "General. Including nature conservation", " geographical distribution", "earthworm distribution", "QH1-199.5", "15. Life on land", "megascolecidae", "rhinodrilidae", "6. Clean water", "03 medical and health sciences", "udupi power corporation limited (upcl).", "edaphic factors", "QH540-549.5"], "contacts": [{"organization": "T.S. Harish Kumar, M. Siddaraju, C.H. Krishna Bhat, K.S. Sreepada,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.11609/jott.3806.10.3.11432-11442"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Threatened%20Taxa", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.11609/jott.3806.10.3.11432-11442", "name": "item", "description": "10.11609/jott.3806.10.3.11432-11442", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.11609/jott.3806.10.3.11432-11442"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-03-26T00:00:00Z"}}, {"id": "10.1146/annurev-environ-101718-033129", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:37Z", "type": "Journal Article", "created": "2019-06-11", "title": "Land-Management Options for Greenhouse Gas Removal and Their Impacts on Ecosystem Services and the Sustainable Development Goals", "description": "

Land-management options for greenhouse gas removal (GGR) include afforestation or reforestation (AR), wetland restoration, soil carbon sequestration (SCS), biochar, terrestrial enhanced weathering (TEW), and bioenergy with carbon capture and storage (BECCS). We assess the opportunities and risks associated with these options through the lens of their potential impacts on ecosystem services (Nature's Contributions to People; NCPs) and the United Nations Sustainable Development Goals (SDGs). We find that all land-based GGR options contribute positively to at least some NCPs and SDGs. Wetland restoration and SCS almost exclusively deliver positive impacts. A few GGR options, such as afforestation, BECCS, and biochar potentially impact negatively some NCPs and SDGs, particularly when implemented at scale, largely through competition for land. For those that present risks or are least understood, more research is required, and demonstration projects need to proceed with caution. For options that present low risks and provide cobenefits, implementation can proceed more rapidly following no-regrets principles.

", "keywords": ["330", "Sustainable Development Goals", "710", "SDG", "CDR", "01 natural sciences", "333", "nature's contributions to people", "12. Responsible consumption", "wetland restoration", "soil carbon sequestration", "negative emission technology", "afforestation/reforestation", "11. Sustainability", "BECCS", "NCPs", "biochar", "UN Sustainable Development Goals", "carbon dioxide removal", "0105 earth and related environmental sciences", "2. Zero hunger", "bioenergy with carbon capture and storage", "greenhouse gas removal", "15. Life on land", "6. Clean water", "SDG 15", "NET", "Nature's Contributions to People", "13. Climate action", "ecosystem services", "terrestrial enhanced weathering"]}, "links": [{"href": "https://www.annualreviews.org/doi/pdf/10.1146/annurev-environ-101718-033129"}, {"href": "https://doi.org/10.1146/annurev-environ-101718-033129"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Annual%20Review%20of%20Environment%20and%20Resources", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1146/annurev-environ-101718-033129", "name": "item", "description": "10.1146/annurev-environ-101718-033129", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1146/annurev-environ-101718-033129"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-10-17T00:00:00Z"}}, {"id": "10.1146/annurev-phyto-082718-100139", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:37Z", "type": "Journal Article", "created": "2019-07-24", "title": "Molecular Interactions Between Smut Fungi and Their Host Plants", "description": "

Smut fungi are a large group of biotrophic plant pathogens that infect mostly monocot species, including economically relevant cereal crops. For years, Ustilago maydis has stood out as the model system to study the genetics and cell biology of smut fungi as well as the pathogenic development of biotrophic plant pathogens. The identification and functional characterization of secreted effectors and their role in virulence have particularly been driven forward using the U. maydis\uffe2\uff80\uff93maize pathosystem. Today, advancing tools for additional smut fungi such as Ustilago hordei and Sporisorium reilianum, as well as an increasing number of available genome sequences, provide excellent opportunities to investigate in parallel the effector function and evolution associated with different lifestyles and host specificities. In addition, genome analyses revealed similarities in the genomic signature between pathogenic smuts and epiphytic Pseudozyma species. This review elaborates on how knowledge about fungal lifestyles, genome biology, and functional effector biology has helped in understanding the biology of this important group of fungal pathogens. We highlight the contribution of the U. maydis model system but also discuss the differences from other smut fungi, which raises the importance of comparative genomic and genetic analyses in future research.

", "keywords": ["Fungal Proteins", "2. Zero hunger", "0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Fungi", "Ustilago", "Ustilaginales", "Zea mays", "Plant Diseases"]}, "links": [{"href": "https://www.annualreviews.org/doi/pdf/10.1146/annurev-phyto-082718-100139"}, {"href": "https://doi.org/10.1146/annurev-phyto-082718-100139"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Annual%20Review%20of%20Phytopathology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1146/annurev-phyto-082718-100139", "name": "item", "description": "10.1146/annurev-phyto-082718-100139", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1146/annurev-phyto-082718-100139"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-08-25T00:00:00Z"}}, {"id": "10.5061/dryad.7465c1j", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:23:10Z", "type": "Dataset", "title": "Data from: An alternative approach to reduce algorithm-derived biases in monitoring soil organic carbon changes", "description": "unspecifiedQuantifying soil organic carbon (SOC) changes is a fundamental issue in ecology and sustainable agriculture. However, the algorithm-derived biases in comparing SOC status have not been fully addressed. Although the methods based on equivalent soil mass (ESM) and mineral-matter mass (EMMM) reduced biases of the conventional methods based on equivalent soil volume (ESV), they face challenges in ensuring both data comparability and accuracy of SOC estimation due to unequal basis for comparison and using un-conserved reference systems. We introduce the basal mineral-matter reference systems (soils at time zero with natural porosity but no organic matter) and develop an approach based on equivalent mineral-matter volume (EMMV). To show the temporal bias, SOC change rates were re-calculated with the ESV method and modified methods that referenced to soils at time t1 (ESM, EMMM, EMMV-t1) or referenced to soils at time zero (EMMV-t0) using two datasets with contrasting SOC status. To show the spatial bias, the ESV and EMMV-t0 derived SOC stocks were compared using datasets from six sites across biomes. We found that, in the relatively C-rich forests, SOC accumulation rates derived from the modified methods that referenced to t1 soils and from the EMMV-t0 method were 5.7-13.6% and 20.6% higher than that calculated by the ESV method, respectively. Nevertheless, in the C-poor lands, no significant algorithmic biases of SOC estimation were observed. Finally, both the SOC stock discrepancies (ESV vs EMMV-t0) and the proportions of this unaccounted SOC were large and site-dependent. These results suggest that although the modified methods that referenced to t1 soils could reduce the biases derived from soil volume changes, they may not properly quantify SOC changes due to using un-conserved reference systems. The EMMV-t0 method provides an approach to address the two problems and is potentially useful since it enables SOC comparability and integrating SOC datasets.", "keywords": ["2. Zero hunger", "soil organic carbon", "basal mineral-matter reference systems", "soil volume change", "reference systems", "15. Life on land", "algorithm-derived biases", "SOC comparability", "equivalent mineral-matter volume"], "contacts": [{"organization": "Zhang, Weixin, Chen, Yuanqi, Shi, Leilei, Wang, Xiaoli, Liu, Yongwen, Mao, Rong, Rao, Xingquan, Lin, Yongbiao, Shao, Yuanhu, Li, Xiaobo, Zhao, Cancan, Liu, Shengjie, Piao, Shilong, Zhu, Weixing, Zou, Xiaoming, Fu, Shenglei,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.7465c1j"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.7465c1j", "name": "item", "description": "10.5061/dryad.7465c1j", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.7465c1j"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-06-03T00:00:00Z"}}, {"id": "10.1146/annurev-food-052720-010751", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:37Z", "type": "Journal Article", "created": "2021-10-22", "title": "Next-generation food research: Use of meta-omic approaches for characterizing microbial communities along the food chain", "description": "

Microorganisms exist along the food chain and impact the quality and safety of foods in both positive and negative ways. Identifying and understanding the behavior of these microbial communities enable the implementation of preventative or corrective measures in public health and food industry settings. Current culture-dependent microbial analyses are time-consuming and target only specific subsets of microbes. However, the greater use of culture-independent meta-omic approaches has the potential to facilitate a thorough characterization of the microbial communities along the food chain. Indeed, these methods have shown potential in contributing to outbreak investigation, ensuring food authenticity, assessing the spread ofantimicrobial resistance, tracking microbial dynamics during fermentation and processing, and uncovering the factors along the food chain that impact food quality and safety. This review examines the community-based approaches, and particularly the application of sequencing-based meta-omics strategies, for characterizing microbial communities along the food chain.

", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "High-throughput sequencing", "Food Chain", "Food microbiome", "Microbiota", "high-throughput sequencing", "Meta-omic approaches", "food processing environment", "3. Good health", "meta-omic approaches", "03 medical and health sciences", "food-processing environment", "food microbiome; food-processing environment; high-throughput sequencing; meta-omic approaches; Fermentation; Food Industry; Food Chain; Microbiota", "food microbiome", "Fermentation", "Food Industry", "Food-processing environment"]}, "links": [{"href": "https://www.annualreviews.org/doi/pdf/10.1146/annurev-food-052720-010751"}, {"href": "https://doi.org/10.1146/annurev-food-052720-010751"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Annual%20Review%20of%20Food%20Science%20and%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1146/annurev-food-052720-010751", "name": "item", "description": "10.1146/annurev-food-052720-010751", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1146/annurev-food-052720-010751"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-03-25T00:00:00Z"}}, {"id": "10.1146/annurev-resource-091912-151933", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:37Z", "type": "Journal Article", "created": "2013-06-01", "title": "The Perverse Effects Of Biofuel Public-Sector Policies", "description": "

Biofuel policies are a subset of policies designed to achieve energy security, an improved environment, enhanced agricultural incomes, technological change, and overall economic benefits, with increased domestic energy production creating green jobs and foreign exchange savings. In assessing this broad spectrum of proclaimed policy goals with the outcome of biofuel mandates, subsidies, import barriers, binary sustainability standards, and indirect land use measures, we identify many perverse and contradictory effects. Most importantly, we show how biofuel policies established the crop-energy price link and hence the food-fuel trade-off, the contradictory effects of combining mandates with different subsidies, the various surprising welfare economic effects, and the various inconsistencies associated with binary sustainability standards and carbon leakages. We conclude with examples of how biofuel policies have generated paradoxical effects in many other different dimensions.

", "keywords": ["2. Zero hunger", "biofuels", " mandates", " subsidies", " tariffs", " externalities", " greenhouse gases", " traffic congestion", " air pollution", " burden of taxation", " agriculture", " environment", " energy", "05 social sciences", "1. No poverty", "jel:H23", "7. Clean energy", "jel:H21", "12. Responsible consumption", "13. Climate action", "jel:Q54", "0502 economics and business", "11. Sustainability", "jel:Q48", "jel:Q56", "jel:R48"], "contacts": [{"organization": "Harry de Gorter, Dusan Drabik, David R. Just,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1146/annurev-resource-091912-151933"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Annual%20Review%20of%20Resource%20Economics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1146/annurev-resource-091912-151933", "name": "item", "description": "10.1146/annurev-resource-091912-151933", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1146/annurev-resource-091912-151933"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-06-01T00:00:00Z"}}, {"id": "10.1155/2013/546750", "type": "Feature", "geometry": null, "properties": {"updated": "2026-04-03T16:20:37Z", "type": "Journal Article", "created": "2013-07-01", "title": "Solubility And Leaching Risks Of Organic Carbon In Paddy Soils As Affected By Irrigation Managements", "description": "

Influence of nonflooding controlled irrigation (NFI) on solubility and leaching risk of soil organic carbon (SOC) were investigated. Compared with flooding irrigation (FI) paddies, soil water extractable organic carbon (WEOC) and dissolved organic carbon (DOC) in NFI paddies increased in surface soil but decreased in deep soil. The DOC leaching loss in NFI field was 63.3\uffe2\uff80\uff89kg C ha\uffe2\uff88\uff921, reduced by 46.4% than in the FI fields. It indicated that multi\uffe2\uff80\uff90wet\uffe2\uff80\uff90dry cycles in NFI paddies enhanced the decomposition of SOC in surface soils, and less carbon moved downward to deep soils due to less percolation. That also led to lower SOC in surface soils in NFI paddies than in FI paddies, which implied that more carbon was released into the atmosphere from the surface soil in NFI paddies. Change of solubility of SOC in NFI paddies might lead to potential change in soil fertility and sustainability, greenhouse gas emission, and bioavailability of trace metals or organic pollutants.

", "keywords": ["2. Zero hunger", "Technology", "Agricultural Irrigation", "T", "Science", "Q", "R", "Water", "Oryza", "04 agricultural and veterinary sciences", "15. Life on land", "Carbon", "6. Clean water", "Soil", "Solubility", "13. Climate action", "Medicine", "0401 agriculture", " forestry", " and fisheries", "Research Article"]}, "links": [{"href": "https://doi.org/10.1155/2013/546750"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20Scientific%20World%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1155/2013/546750", "name": "item", "description": "10.1155/2013/546750", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1155/2013/546750"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2013-01-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=se&offset=2400&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=se&offset=2400&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "prev", "title": "items (prev)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=se&offset=2350", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=se&offset=2450", "hreflang": "en-US"}], "numberMatched": 10456, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-04-04T10:21:08.106014Z"}