{"type": "FeatureCollection", "features": [{"id": "10.1093/plphys/kiad398", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:18:14Z", "type": "Journal Article", "created": "2023-07-10", "title": "Aromatic amino acid biosynthesis impacts root hair development and symbiotic associations inLotus japonicus", "description": "Abstract<p>Legume roots can be symbiotically colonized by arbuscular mycorrhizal (AM) fungi and nitrogen-fixing bacteria. In Lotus japonicus, the latter occurs intracellularly by the cognate rhizobial partner Mesorhizobium loti or intercellularly with the Agrobacterium pusense strain IRBG74. Although these symbiotic programs show distinctive cellular and transcriptome signatures, some molecular components are shared. In this study, we demonstrate that 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 1 (DAHPS1), the first enzyme in the biosynthetic pathway of aromatic amino acids (AAAs), plays a critical role in root hair development and for AM and rhizobial symbioses in Lotus. Two homozygous DAHPS1 mutants (dahps1-1 and dahps1-2) showed drastic alterations in root hair morphology, associated with alterations in cell wall dynamics and a progressive disruption of the actin cytoskeleton. The altered root hair structure was prevented by pharmacological and genetic complementation. dahps1-1 and dahps1-2 showed significant reductions in rhizobial infection (intracellular and intercellular) and nodule organogenesis and a delay in AM colonization. RNAseq analysis of dahps1-2 roots suggested that these phenotypes are associated with downregulation of several cell wall\uffe2\uff80\uff93related genes, and with an attenuated signaling response. Interestingly, the dahps1 mutants showed no detectable pleiotropic effects, suggesting a more selective recruitment of this gene in certain biological processes. This work provides robust evidence linking AAA metabolism to root hair development and successful symbiotic associations.</p", "keywords": ["580", "Plant biology", "570", "Phenotype", "Mycorrhizae", "Lotus", "Symbiosis", "Root Nodules", " Plant", "Plant Roots", "Research Article"]}, "links": [{"href": "https://academic.oup.com/plphys/article-pdf/193/2/1508/51727974/kiad398.pdf"}, {"href": "https://doi.org/10.1093/plphys/kiad398"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Physiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/plphys/kiad398", "name": "item", "description": "10.1093/plphys/kiad398", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/plphys/kiad398"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-07-10T00:00:00Z"}}, {"id": "10.5061/dryad.wh70rxwww", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:21:32Z", "type": "Dataset", "created": "2024-06-19", "title": "Data from: Competition between mixo- and heterotrophic ciliates under dynamic resource supply", "description": "unspecifiedThe outcome of species competition strongly depends on the traits of the  competitors and associated trade-offs, as well as on environmental  variability. Here we investigate the relevance of consumer trait variation  for species coexistence in a ciliate consumer \u2013 microalgal prey system  under fluctuating regimes of resource supply. We focus on consumer  competition and feeding traits, and specifically on the consumer\u2019s ability  to overcome periods of resource limitation by mixotrophy, i. e. the  ability of photosynthetic carbon fixation via algal symbionts in addition  to phagotrophy. In a 48-day chemostat experiment, we investigated  competitive interactions of different heterotrophic and mixotrophic  ciliates of the genera Euplotes and Coleps under different resource  regimes, providing prey either continuously or in pulses under constant or  fluctuating light, entailing periods of resource depletion in fluctuating  environments, but overall providing the same amount of prey and light.  Although ultimate competition results remained unaffected, population  dynamics of mixotrophic and heterotrophic ciliates were significantly  altered by resource supply mode. However, the effects differed among  species combinations and changed over time. Whether mixotrophs or  heterotrophs dominated in competition strongly depended on the genera of  the competing species and thus species-specific differences in the minimum  resource requirements that are associated with feeding on shared prey,  nutrient uptake, light harvesting and access to additional resources such  as bacteria. Potential differences in the curvature of the species\u2019  resource-dependent growth functions may have further mediated the  species-specific responses to the different resource supply modes.  Overall, our study demonstrates that genus- or species-specific traits  other than related to nutritional mode may override the relevance of  acquired phototrophy by heterotrophs in competitive interactions, and that  the potential advantage of photosynthetic carbon fixation of  symbiont-bearing mixotrophs in competition with pure heterotrophs may  differ greatly among different mixotrophs, playing out under different  environmental conditions and depending on the specific requirements of the  species. Complex trophic interactions determine the outcome of  competition, which can only be understood by taking on a multidimensional  trait perspective.", "keywords": ["Ciliates", "mixotrophy", "FOS: Biological sciences", "coexistence", "resource fluctuations", "microalgae-ciliate symbiosis"], "contacts": [{"organization": "Fl\u00f6der, Sabine, Klauschies, Toni, Klaassen, Moritz, Stoffers, Tjardo, Lambrecht, Max, Moorthi, Stefanie,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.wh70rxwww"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.wh70rxwww", "name": "item", "description": "10.5061/dryad.wh70rxwww", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.wh70rxwww"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-06-23T00:00:00Z"}}, {"id": "10.1007/s00248-024-02363-6", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:16Z", "type": "Journal Article", "created": "2024-03-01", "title": "The Feather Moss Hylocomium splendens Affects the Transcriptional Profile of a Symbiotic Cyanobacterium in Relation to Acquisition and Turnover of Key Nutrients", "description": "Abstract<p>Moss-cyanobacteria symbioses were proposed to be based on nutrient exchange, with hosts providing C and S while bacteria provide N, but we still lack understanding of the underlying molecular mechanisms of their interactions. We investigated how contact between the ubiquitous moss Hylocomium splendens and its cyanobiont affects nutrient-related gene expression of both partners. We isolated a cyanobacterium from H. splendens and co-incubated it with washed H. splendens shoots. Cyanobacterium and moss were also incubated separately. After 1\uffc2\uffa0week, we performed acetylene reduction assays to estimate N2 fixation and RNAseq to evaluate metatranscriptomes. Genes related to N2 fixation and the biosynthesis of several amino acids were up-regulated in the cyanobiont when hosted by the moss. However, S-uptake and the biosynthesis of the S-containing amino acids methionine and cysteine were down-regulated in the cyanobiont while the degradation of selenocysteine was up-regulated. In contrast, the number of differentially expressed genes in the moss was much lower, and almost no transcripts related to nutrient metabolism were affected. It is possible that, at least during the early stage of this symbiosis, the cyanobiont receives few if any nutrients from the host in return for N, suggesting that moss\uffe2\uff80\uff93cyanobacteria symbioses encompass relationships that are more plastic than a constant mutualist flow of nutrients.</p", "keywords": ["Research", "Nitrogen Fixation", "Bryophyta", "Amino Acids", "Symbiosis", "Cyanobacteria", "Bryopsida"]}, "links": [{"href": "https://doi.org/10.1007/s00248-024-02363-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00248-024-02363-6", "name": "item", "description": "10.1007/s00248-024-02363-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00248-024-02363-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-03-01T00:00:00Z"}}, {"id": "10.1007/s00248-008-9390-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:16Z", "type": "Journal Article", "created": "2008-04-28", "title": "Plant Responses To Drought Stress And Exogenous Aba Application Are Modulated Differently By Mycorrhization In Tomato And An Aba-Deficient Mutant (Sitiens)", "description": "The aims of the present study are to find out whether the effects of arbuscular mycorrhizal (AM) symbiosis on plant resistance to water deficit are mediated by the endogenous abscisic acid (ABA) content of the host plant and whether the exogenous ABA application modifies such effects. The ABA-deficient tomato mutant sitiens and its near-isogenic wild-type parental line were used. Plant development, physiology, and expression of plant genes expected to be modulated by AM symbiosis, drought, and ABA were studied. Results showed that only wild-type tomato plants responded positively to mycorrhizal inoculation, while AM symbiosis was not observed to have any effect on plant development in sitiens plants grown under well-watered conditions. The application of ABA to sitiens plants enhanced plant growth both under well-watered and drought stress conditions. In respect to sitiens plants subjected to drought stress, the addition of ABA had a cumulative effect in relation to that of inoculation with G. intraradices. Most of the genes analyzed in this study showed different regulation patterns in wild-type and sitiens plants, suggesting that their gene expression is modulated by the plant ABA phenotype. In the same way, the colonization of roots with the AM fungus G. intraradices differently regulated the expression of these genes in wild-type and in sitiens plants, which could explain the distinctive effect of the symbiosis on each plant ABA phenotype. This also suggests that the effects of the AM symbiosis on plant responses and resistance to water deficit are mediated by the plant ABA phenotype.", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "15. Life on land", "Adaptation", " Physiological", "Plant Roots", "6. Clean water", "Droughts", "03 medical and health sciences", "Solanum lycopersicum", "Mycorrhizae", "Mutation", "Symbiosis", "Abscisic Acid"]}, "links": [{"href": "https://doi.org/10.1007/s00248-008-9390-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Microbial%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00248-008-9390-y", "name": "item", "description": "10.1007/s00248-008-9390-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00248-008-9390-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2008-04-29T00:00:00Z"}}, {"id": "10.1007/s00572-015-0627-6", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-26T16:14:26Z", "type": "Journal Article", "created": "2015-02-13", "title": "Nitrogen and carbon/nitrogen dynamics in arbuscular mycorrhiza: the great unknown", "description": "Many studies have established that arbuscular mycorrhizal fungi transfer N to the host plant. However, the role and importance of arbuscular mycorrhiza (AM) in plant N nutrition is still uncertain, as are the C/N interactions within the symbiosis. Published reports provide differing, and often contradictory, results that are difficult to combine in a coherent framework. This review explores questions such as: What makes the difference between a positive and a negative effect of AM on plant N nutrition? Is the mycorrhizal N response (MNR) correlated to the mycorrhizal growth response (MGR), and how or under which conditions? Is the MNR effect on plant growth C mediated? Is plant C investment on fungal growth related to N needs or N benefit? How is the N for C trade between symbionts regulated? The patternless nature of current knowledge is made evident, and possible reasons for this are discussed.", "keywords": ["2. Zero hunger", "Nitrogen", "Mycorrhizae", "Plant Development", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "Plants", "Symbiosis", "Carbon"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s00572-015-0627-6"}, {"href": "https://doi.org/10.1007/s00572-015-0627-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Mycorrhiza", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s00572-015-0627-6", "name": "item", "description": "10.1007/s00572-015-0627-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s00572-015-0627-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-02-14T00:00:00Z"}}, {"id": "10.1007/s11104-012-1411-4", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:50Z", "type": "Journal Article", "created": "2012-08-14", "title": "Biochar Application Reduces Nodulation But Increases Nitrogenase Activity In Clover", "description": "Background and aims: Biochar is produced from the pyrolysis of organic materials, and when buried in soil can act as a long term soil carbon (C) store. Evidence suggests that biochar can also increase crop yields, reduce nutrient leaching and increase biological nitrogen fixation in leguminous plants. However, the potential for increasing biological N2 fixation in agroecosystems is poorly understood, with inconsistent reports of root nodulation following biochar application. Therefore, the aim of this study was to determine the effect of biochar application rate and time since application on nodulation and nitrogenase activity in nodules of clover grown in a temperate agricultural soil. Methods: We used replicated field plots with three biochar application rates (0, 25 and 50 t ha-1). Three years after biochar amendment, the plots were further split and fresh biochar added at two different rates (25 and 50 t ha-1) resulting in double-loaded reapplications of 25&thinsp;+&thinsp;25 and 50&thinsp;+&thinsp;50 t ha-1. Results: Three years after biochar application, there was no significant difference in the total number of root nodules between biochar-amended and unamended soil, regardless of the application rate. However, despite clover root nodules being of a similar number and size the level of nitrogenase activity of individual nodules in biochar-amended soil was significantly higher than in unamended soil. Reapplication of biochar resulted in decreased nodulation, although the rate of nitrogenase activity per nodule remained unaffected. Conclusion: In the short term, biochar influences root nodule number and localised N2 fixation per nodule; however, total nitrogenase activity for the whole root system remained unaffected by the application rate of biochar or time since its application. These results emphasise the importance of long-term field studies, with a variety of applications rates for determining the influence of biochar applications on N2-fixing organisms and in providing data that can meaningfully inform agronomic management decisions and climate change mitigation strategies.", "keywords": ["Carbon sequestration", "2. Zero hunger", "Climate change mitigation", "Legume-Rhizobia symbiosis", "13. Climate action", "Black nitrogen", "0401 agriculture", " forestry", " and fisheries", "Biological nitrogen fixation", "04 agricultural and veterinary sciences", "15. Life on land", "630", "Long term biochar trial", "6. Clean water"]}, "links": [{"href": "http://dspace.stir.ac.uk/bitstream/1893/18417/1/Plant%20Soil%202013.pdf"}, {"href": "https://doi.org/10.1007/s11104-012-1411-4"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20and%20Soil", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11104-012-1411-4", "name": "item", "description": "10.1007/s11104-012-1411-4", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11104-012-1411-4"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2012-08-15T00:00:00Z"}}, {"id": "10.1007/s11130-020-00799-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:14:54Z", "type": "Journal Article", "created": "2020-02-03", "title": "Profile and Content of Residual Alkaloids in Ten Ecotypes of Lupinus mutabilis Sweet after Aqueous Debittering Process", "description": "Abstract<p>The evaluation of the level of alkaloids in edible Lupinus species is crucial from a food safety point of view. Debittering of lupin seeds has a long history; however, the control of the level of alkaloids after processing the seeds is typically only evaluated by changes in the bitter taste. The aim of this study was to evaluate the profile and residual levels of quinolizidine alkaloids (QA) in (Lupinus mutabilis Sweet) after aqueous debittering process. Samples from 10 ecotypes from different areas of Peru were analyzed before and after the process. Based on results obtained by gas chromatography and mass spectrometry, from eight alkaloids identified before the debittering process, only small amounts of lupanine (avg. 0.0012\uffc2\uffa0g/100\uffc2\uffa0g DM) and sparteine (avg. 0.0014\uffc2\uffa0g/100\uffc2\uffa0g DM) remained in the seeds after the debittering process, and no other alkaloids were identified. The aqueous debittering process reduced the content of alkaloids to levels far below the maximal level allowed by international regulations (\uffe2\uff89\uffa4 0.2\uffc2\uffa0g/kg DM).</p>", "keywords": ["0301 basic medicine", "Lupin Seeds", "Sparteine", "Organic chemistry", "Propiedades fisicoqu\u00edmicas", "Plant Science", "Gas Chromatography-Mass Spectrometry", "Evolution and Nutritional Properties of Lupin Seeds", "Agricultural and Biological Sciences", "Food science", "Per\u00fa", "03 medical and health sciences", "Deshidrataci\u00f3n acuosa", "Alkaloids", "Secado", "Tarwi", "https://purl.org/pe-repo/ocde/ford#2.11.01", "Granos", "Composici\u00f3n qu\u00edmica", "ta116", "Biology", "Ecotipos", "Ecology", " Evolution", " Behavior and Systematics", "Ecotype", "2. Zero hunger", "Original Paper", "0303 health sciences", "Rendimiento", "Procesamiento", "Evaluaci\u00f3n", "ta1183", "An\u00e1lisis organol\u00e9ptico", "ta1182", "Botany", "Life Sciences", "Diversity and Applications of Cyperus Species", "Lupinus", "Chocho", "Chemistry", "Contenido proteico", "Evolution and Ecology of Endophyte-Grass Symbiosis", "Taste", "Seeds", "Lupinus mutabilis"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11130-020-00799-y.pdf"}, {"href": "https://doi.org/10.1007/s11130-020-00799-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Foods%20for%20Human%20Nutrition", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11130-020-00799-y", "name": "item", "description": "10.1007/s11130-020-00799-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11130-020-00799-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-02-03T00:00:00Z"}}, {"id": "10.1016/j.eja.2015.09.015", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:15:44Z", "type": "Journal Article", "created": "2015-10-22", "title": "The Intercropping Common Bean With Maize Improves The Rhizobial Efficiency, Resource Use And Grain Yield Under Low Phosphorus Availability", "description": "In order to better understand how mixed crop cultures mitigate stressful conditions, this study aims to highlight the beneficial effect of the intercropping legume-cereal in enhancing soil phosphorus (P) availability for plant growth and productivity in a P-deficient soil of a northern Algerian agroecosystem. To address this question, common bean (Phaseolus vulgaris L. cv. El Djadida) and maize (Zea mays L. cv. Filou), were grown as sole- and inter-crops in two experimental sites; S1 (P-deficient) and S2 (P-sufficient) during two growing seasons (2011 and 2012). Growth, nodulation and grain yield were assessed and correlated with the rhizosphere soil P availability. Results showed that P availability significantly increased in the rhizosphere of both species, especially in intercropping under the P-deficient soil conditions. This increase was associated with high efficiency in use of the rhizobial symbiosis (high correlation between plant biomass and nodulation), plant growth and resource (nitrogen (N) and P) use efficiency as indicated by higher land equivalent ratio (LER > 1) and N nutrition index (for maize) in intercropping over sole cropping treatments. Moreover, the rhizosphere P availability and nodule biomass were positively correlated (r2 = 0.71, p < 0.01 and r2 = 0.62, p < 0.01) in the intercropped common bean grown in the P-deficient soil during 2011 and 2012. The increased P availability presumably improved biomass and grain yield in intercropping, though it mainly enhanced grain yield in intercropped maize. Our findings suggest that modification in the intercropped common bean rhizosphere-induced parameters facilitated P uptake, plant biomass and grain yield for the intercropped maize under P-deficiency conditions.", "keywords": ["[SDV.SA]Life Sciences [q-bio]/Agricultural sciences", "580", "2. Zero hunger", "[SDV.SA] Life Sciences [q-bio]/Agricultural sciences", "Phosphorus", "04 agricultural and veterinary sciences", "Nodulation", "15. Life on land", "Legumes", "Intercropping", "Algeria", "Rhizosphere", "[SDV.BV]Life Sciences [q-bio]/Vegetal Biology", "0401 agriculture", " forestry", " and fisheries", "[SDV.BV] Life Sciences [q-bio]/Vegetal Biology", "Symbiosis"]}, "links": [{"href": "https://doi.org/10.1016/j.eja.2015.09.015"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/European%20Journal%20of%20Agronomy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.eja.2015.09.015", "name": "item", "description": "10.1016/j.eja.2015.09.015", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.eja.2015.09.015"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-01-01T00:00:00Z"}}, {"id": "10.1016/j.foreco.2022.120608", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:16:05Z", "type": "Journal Article", "created": "2022-11-01", "title": "Tree species traits and mycorrhizal association shape soil microbial communities via litter quality and species mediated soil properties", "description": "Open AccessLes sols abritent une grande diversit\u00e9 de microbiote du sol, qui jouent un r\u00f4le crucial dans les processus \u00e9cosyst\u00e9miques cl\u00e9s tels que la transformation de la liti\u00e8re et la min\u00e9ralisation, mais la fa\u00e7on dont les interactions complexes plante-sol fa\u00e7onnent la diversit\u00e9 et la composition du microbiote du sol reste insaisissable. Nous avons effectu\u00e9 le s\u00e9quen\u00e7age de l'amplicon de l'ADN isol\u00e9 \u00e0 partir de la couche arable min\u00e9rale de six arbres europ\u00e9ens communs plant\u00e9s dans des peuplements de monoculture de jardins communs multi-sites d'\u00e9rables \u00e0 feuilles larges et de fr\u00eanes associ\u00e9s \u00e0 des mycorhizes arbusculaires (MA), de h\u00eatres \u00e0 feuilles larges, de chaux et de ch\u00eanes associ\u00e9s \u00e0 des champignons ectomycorhiziens (MCE) et d'\u00e9pinettes de conif\u00e8res associ\u00e9es \u00e0 la MCE. L'objectif principal de cette \u00e9tude \u00e9tait d'\u00e9valuer les effets de l'identit\u00e9 des esp\u00e8ces d'arbres, des traits et des associations mycorhiziennes sur la diversit\u00e9, la structure de la communaut\u00e9, la coh\u00e9sion et le changement dans l'abondance relative des groupes taxonomiques et fonctionnels de bact\u00e9ries, de champignons et de n\u00e9matodes du sol. Nos r\u00e9sultats ont r\u00e9v\u00e9l\u00e9 que les sols sous les feuillus abritaient une plus grande richesse en bact\u00e9ries, champignons et n\u00e9matodes que sous l'\u00e9pinette de Norv\u00e8ge. Les esp\u00e8ces d'arbres \u00e0 feuilles larges associ\u00e9es aux champignons de la MA ont montr\u00e9 une plus grande coh\u00e9sion des communaut\u00e9s bact\u00e9riennes et fongiques que les arbres \u00e0 feuilles larges associ\u00e9s aux champignons de la mec, mais la coh\u00e9sion des communaut\u00e9s de n\u00e9matodes \u00e9tait plus \u00e9lev\u00e9e sous les arbres associ\u00e9s aux champignons de la mec que sous les arbres associ\u00e9s aux champignons de la MA. Les bact\u00e9ries copiotrophes, les saprotrophes fongiques et les n\u00e9matodes bact\u00e9rivores \u00e9taient associ\u00e9s au fr\u00eane, \u00e0 l'\u00e9rable et \u00e0 la chaux ayant un pH du sol \u00e9lev\u00e9 et des indices de d\u00e9composition de la liti\u00e8re \u00e9lev\u00e9s, tandis que les bact\u00e9ries oligotrophes, les champignons ectomycorhiziens et les n\u00e9matodes fongivores \u00e9taient associ\u00e9s au h\u00eatre, au ch\u00eane et \u00e0 l'\u00e9pinette de Norv\u00e8ge qui avaient un pH du sol faible et des indices de d\u00e9composition de la liti\u00e8re faibles. Les esp\u00e8ces d'arbres associ\u00e9es aux champignons AM pr\u00e9sentaient une forte proportion de bact\u00e9ries copiotrophes et de champignons saprotrophes, tandis que les arbres associ\u00e9s aux champignons ECM pr\u00e9sentaient une abondance relative \u00e9lev\u00e9e de bact\u00e9ries oligotrophes, de champignons ECM et de n\u00e9matodes fongivores. Les diff\u00e9rentes abondances de ces groupes fonctionnels soutiennent l'\u00e9conomie nutritive plus inorganique des esp\u00e8ces d'arbres AM par rapport \u00e0 l'\u00e9conomie nutritive plus organique des esp\u00e8ces d'arbres ECM. La communaut\u00e9 bact\u00e9rienne a \u00e9t\u00e9 indirectement affect\u00e9e par la qualit\u00e9 de la liti\u00e8re via les propri\u00e9t\u00e9s du sol, tandis que la communaut\u00e9 fongique a \u00e9t\u00e9 directement affect\u00e9e par la qualit\u00e9 de la liti\u00e8re et les esp\u00e8ces d'arbres. Les groupes fonctionnels des n\u00e9matodes refl\u00e9taient les communaut\u00e9s de bact\u00e9ries et de champignons, indiquant ainsi les groupes principaux et actifs des communaut\u00e9s microbiennes sp\u00e9cifiques aux esp\u00e8ces d'arbres. Notre \u00e9tude a sugg\u00e9r\u00e9 que l'identit\u00e9, les traits et l'association mycorhizienne des esp\u00e8ces d'arbres fa\u00e7onnent consid\u00e9rablement les communaut\u00e9s microbiennes via un effet direct de la chimie de la liti\u00e8re ainsi que via les propri\u00e9t\u00e9s du sol m\u00e9di\u00e9es par la liti\u00e8re.", "keywords": ["Fagus sylvatica", "Soil Science", "Plant Science", "Plant litter", "Agricultural and Biological Sciences", "Soil biology", "Mycorrhizal Fungi and Plant Interactions", "Soil water", "Genetics", "Saproxylic Insect Ecology and Forest Management", "Soil microbiota", "Symbiosis", "Plant Interactions", "Biology", "Ecosystem", "Amplicon sequencing", "Beech", "Ecology", "Bacteria", "Common garden experiment", "Botany", "Life Sciences", "04 agricultural and veterinary sciences", "15. Life on land", "Ectomycorrhiza", "Insect Science", "FOS: Biological sciences", "Functional groups", "Community cohesion", "0401 agriculture", " forestry", " and fisheries", "Trophic interactions", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Mycorrhiza"]}, "links": [{"href": "https://doi.org/10.1016/j.foreco.2022.120608"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Forest%20Ecology%20and%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.foreco.2022.120608", "name": "item", "description": "10.1016/j.foreco.2022.120608", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.foreco.2022.120608"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-01T00:00:00Z"}}, {"id": "10.1016/j.mib.2019.08.004", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:16:25Z", "type": "Journal Article", "created": "2019-10-22", "title": "The mycobiota: fungi take their place between plants and bacteria", "description": "Eukaryotes host numerous intracellular and associated microbes in their microbiota. Fungi, the so-called Mycobiota, are important members of both human and plant microbiota. Moreover, members of the plant mycobiota host their own microbiota on their surfaces and inside their hyphae. The microbiota of the mycobiota includes mycorrhizal helper bacteria (for mycorrhizal fungi) and fungal endobacteria, which are critical for the fungal host and, as such, likely affect the plant. This review discusses the contribution that these often-overlooked members make to the composition and performance of the plant microbiota.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Bacteria", "Host Microbial Interactions", "RNA", " Ribosomal", " 16S", "Fungi", "Microbial Interactions", "Plants", "Bacterial Physiological Phenomena", "Symbiosis", "Phylogeny", "Mycobiome"], "contacts": [{"organization": "Bonfante P., Venice F., Lanfranco L.,", "roles": ["creator"]}]}, "links": [{"href": "https://iris.unito.it/bitstream/2318/1728500/7/Bonfante%2c%20Venice%20and%20Lanfranco_Current%20Opinion%20Author%20final%20version.pdf"}, {"href": "https://doi.org/10.1016/j.mib.2019.08.004"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Current%20Opinion%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.mib.2019.08.004", "name": "item", "description": "10.1016/j.mib.2019.08.004", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.mib.2019.08.004"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-06-01T00:00:00Z"}}, {"id": "10.1016/j.plantsci.2017.06.006", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-26T16:16:28Z", "type": "Journal Article", "created": "2017-06-27", "title": "Belowground microbes mitigate plant-plant competition", "description": "Dimorphandra wilsonii, a Cerrado endemic Fabaceae tree, is threatened by land-use changes. The few remaining individuals occur in areas dominated by alien grasses like Urochloa decumbens. We tested the impact of nitrogen (N) availability and symbionts' presence on mitigating the effects of competition from U. decumbens. Dimorphandra wilsonii seedlings were 50-week pot-cultivated under limiting (3mM) or non-limiting (10mM)\u2009N, with or without U. decumbens, and inoculated or not with a N-fixer (Bradyrhizobium sp.) and an arbuscular mycorrhizal fungus (AMF - Glomus etunicatum), both forming symbioses in the field. Since D. wilsonii seedlings grew more and 'lost' fewer nutrients under the symbionts' presence, symbionts mitigated plant-plant competition. Under limiting N, inoculated D. wilsonii seedlings grew more (despite no nodulation), but N fixation was only suggested when inoculated D. wilsonii seedlings competed with U. decumbens. D. wilsonii13C, and substrate's carbon and respiration suggest that only the microbes performing key functions received plant carbon. Under non-limiting N, inoculated D. wilsonii seedlings became enriched in 13C, substrate accumulated carbon and microbial respiration increased, suggesting a more generalist microbial community. Data suggest inoculating D. wilsonii seeds/seedlings with AMF and N-fixers as a conservation measure. However, long-term field-studies need to confirm these conclusions.", "keywords": ["2. Zero hunger", "0301 basic medicine", "03 medical and health sciences", "Nitrogen", "Mycorrhizae", "0401 agriculture", " forestry", " and fisheries", "Fabaceae", "Bradyrhizobium", "04 agricultural and veterinary sciences", "15. Life on land", "Symbiosis", "3. Good health"]}, "links": [{"href": "https://doi.org/10.1016/j.plantsci.2017.06.006"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.plantsci.2017.06.006", "name": "item", "description": "10.1016/j.plantsci.2017.06.006", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.plantsci.2017.06.006"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-09-01T00:00:00Z"}}, {"id": "10.1016/j.scitotenv.2019.04.038", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-26T16:16:35Z", "type": "Journal Article", "created": "2019-04-04", "title": "When the exception becomes the rule: An integrative approach to symbiosis", "description": "Symbiosis, mainly due to the advances in -omics technology and to the microbiome revolution, is being increasingly acknowledged as fundamental to explain any aspect of life existence. Previously considered an exception, a peculiar characteristic of few systems like lichens, corals and mycorrhizas, symbiosis is nowadays recognized as the rule, with the microbiome being part of all living entities and systems. However, our knowledge of the ecological meaning and functioning of many symbiotic systems is still limited. Here, we discuss a new, integrative approach based on current findings that looks at commonalities among symbiotic systems to produce theoretical models and conceptual knowledge that would allow a more efficient exploitation of symbiosis-based biotechnologies. The microbiome recruitment and assemblage processes are indicated as one of the potential targets where a holistic approach could bring advantages. Finally, we reflect on the potential socio-economic and environmental consequences of a symbiotic view of the world, where co-dependence is the matrix of life.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Microbiota", "Animals", "Anthozoa", "Symbiosis"]}, "links": [{"href": "https://doi.org/10.1016/j.scitotenv.2019.04.038"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.scitotenv.2019.04.038", "name": "item", "description": "10.1016/j.scitotenv.2019.04.038", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.scitotenv.2019.04.038"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-07-01T00:00:00Z"}}, {"id": "10.1016/j.soilbio.2022.108918", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:16:50Z", "type": "Journal Article", "created": "2022-12-22", "title": "Litter chemistry of common European tree species drives the feeding preference and consumption rate of soil invertebrates, and shapes the diversity and structure of gut and faecal microbiomes", "description": "Open AccessTerrestrial isopods and millipedes are key drivers of a litter decomposition in terrestrial ecosystems but the effects of litter chemistry on feeding preference and litter consumption rate as well as on the diversity and composition of gut and faecal microbiome still entails several challenges. We established a mesocosm experiment with terrestrial isopods (Oniscus asellus) and millipedes (Glomeris marginata) fed by leaf litter from six common European tree species (ash, maple, lime, beech, oak and Norway spruce) to reveal the effect of litter chemistry on consumption rate and feeding preference as well as on the compositions of gut and faecal microbiomes. The total percentage of consumed litter showed that O. asellus preferred nutrient-rich and labile-C litter of ash over more recalcitrant litter of oak, beech, and Norway spruce, while G. marginata preferred calcium-rich ash, maple and lime litter over beech and Norway spruce. Consumption of litter by O. asellus and G. marginata increased with concentrations of magnesium, sulphur and potassium but decreased with concentrations of iron, phosphorus, lignin, cellulose and TOC. The millipede G. marginata harboured higher bacterial OTU richness (73.5 \u00b1 12.5) than the isopod O. asellus (49.1 \u00b1 15.9), but fungal OTU richness was similar with 25.8 \u00b1 6.7 in O. asellus and 25.7 \u00b1 2.7 in G. marginata. In total, faeces of both animals hosted higher diversity than gut. In gut and faeces of O. asellus, the fungal OTU richness was highest for individuals fed by litter of Norway spruce, while lowest OTU richness was recorded for individuals fed by litter of more palatable ash. In contrast, the highest diversity of the fungal community in gut and faeces of G. marginata was recorded for individuals fed by palatable lime litter, while the lowest OTUs richness was recorded when millipedes were fed by maple and spruce. The structures of bacterial and fungal communities generally separated between O. asellus and G. marginata. The fungal community structure in gut and faeces differed between animals fed by different foliar litters, while the bacterial community structure mainly differed between gut and faeces regardless of the offered type of litter. The fungal community structure in gut and faeces of O. asellus and G. marginata were shaped by concentrations of magnesium, sulphur, lignin and cellulose. The bacterial communities in gut and faeces of both O. asellus and G. marginata were dominated by copiotrophic bacteria, while fungal communities were dominated by unspecified saprotrophs. Our study suggest that litter quality is a strong driver of feeding preference and consumption rates as well as composition of bacterial and fungal communities in gut and faeces of two species representing the main groups of litter feeding soil fauna in European forests.", "keywords": ["0301 basic medicine", "Genomic Insights into Social Insects and Symbiosis", "Plant Science", "Plant litter", "Agricultural and Biological Sciences", "03 medical and health sciences", "Biochemistry", " Genetics and Molecular Biology", "Litter", "Genetics", "Ecological Niche", "Biology", "Ecosystem", "Beech", "0303 health sciences", "Species Distribution Modeling and Climate Change Impacts", "Ecology", "Ecological Modeling", "Botany", "Life Sciences", "15. Life on land", "Plant-Parasitic Nematodes in Molecular Plant Pathology", "Detritus", "FOS: Biological sciences", "Detritivore", "Environmental Science", "Physical Sciences", "Species richness"]}, "links": [{"href": "https://doi.org/10.1016/j.soilbio.2022.108918"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.soilbio.2022.108918", "name": "item", "description": "10.1016/j.soilbio.2022.108918", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.soilbio.2022.108918"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-02-01T00:00:00Z"}}, {"id": "10.1016/j.syapm.2020.126149", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:17:04Z", "type": "Journal Article", "created": "2020-09-30", "title": "Genetic diversity and phylogeny of indigenous rhizobia nodulating faba bean (Vicia faba L.) in Greece", "description": "The genetic diversity and phylogeny of fast-growing rhizobia isolated from root nodules of Vicia faba grown in different geographical regions of Greece were assessed. Although Rhizobium leguminosarum sv. viciae is the most common symbiont of Vicia spp. in European soils, there is no available information on native rhizobia nodulating faba bean in Greece. Seventy bacterial strains were isolated and grouped into sixteen distinct profiles based on BOX-PCR fingerprinting. The phylogenetic affiliation was further defined by sequence analysis of the rrs and multilocus sequence analysis (MLSA) of three housekeeping genes (recA, atpD and gyrB). Fifty-eight isolates were affiliated with recently described genospecies gsF-2, represented by R. laguerreae FB206T, whereas six isolates were closely related to gsB and two isolates might belong to gsA. Two isolates assigned to R. hidalgonense and another two non-nodulating strains could not be assigned to any validly defined species and possibly belong to a new rhizobial lineage. Interestingly, R. laguerreae strains were commonly found at all sampling sites, suggesting that they could be the main symbionts of faba beans in Greek soils. According to the phylogenies of two symbiosis-related genes (nodC and nifH), all nodulating isolates belonged to symbiovar (sv.) viciae harboring four distinct nodC gene haplotypes and they were grouped into two clades together with strains assigned to R. laguerreae and genospecies of R. leguminosarum isolated from other countries and continents. This is the first report that R. hidalgonense strains belong to sv. viciae. No correlation was observed between the nodC haplotypes, geographic origin and chromosomal background of the isolates in the study.", "keywords": ["MLSA", "DNA", " Bacterial", "0301 basic medicine", "0303 health sciences", "Genes", " Essential", "Greece", "Viciae", "Sequence Analysis", " DNA", "DNA Fingerprinting", "Vicia faba", "03 medical and health sciences", "Symbiovar", "Genes", " Bacterial", "RNA", " Ribosomal", " 16S", "Root Nodules", " Plant", "Symbiosis", "Phylogeny", "Soil Microbiology", "Multilocus Sequence Typing", "Rhizobium"]}, "links": [{"href": "https://doi.org/10.1016/j.syapm.2020.126149"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Systematic%20and%20Applied%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.syapm.2020.126149", "name": "item", "description": "10.1016/j.syapm.2020.126149", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.syapm.2020.126149"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-11-01T00:00:00Z"}}, {"id": "10.1016/j.tplants.2018.08.008", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:17:04Z", "type": "Journal Article", "created": "2018-09-18", "title": "Growing Research Networks on Mycorrhizae for Mutual Benefits", "description": "Research on mycorrhizal interactions has traditionally developed into separate disciplines addressing different organizational levels. This separation has led to an incomplete understanding of mycorrhizal functioning. Integration of mycorrhiza research at different scales is needed to understand the mechanisms underlying the context dependency of mycorrhizal associations, and to use mycorrhizae for solving environmental issues. Here, we provide a road map for the integration of mycorrhiza research into a unique framework that spans genes to ecosystems. Using two key topics, we identify parallels in mycorrhiza research at different organizational levels. Based on two current projects, we show how scientific integration creates synergies, and discuss future directions. Only by overcoming disciplinary boundaries, we will achieve a more comprehensive understanding of the functioning of mycorrhizal associations.", "keywords": ["580", "0301 basic medicine", "570", "synergies", "0303 health sciences", "500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::579 Mikroorganismen", " Pilze", " Algen", "Integration", "mycorrhiza", "integration", "579", "Plant Roots", "Article", "Organizational level", "03 medical and health sciences", "Synergies", "500 Naturwissenschaften und Mathematik::580 Pflanzen (Botanik)::580 Pflanzen (Botanik)", "international", "Mycorrhizae", "Mycorrhiza", "Symbiosis", "organizational level"]}, "links": [{"href": "https://iris.unito.it/bitstream/2318/1677180/1/Ferlian%20et%20al_TIPS.pdf"}, {"href": "https://doi.org/10.1016/j.tplants.2018.08.008"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Trends%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.tplants.2018.08.008", "name": "item", "description": "10.1016/j.tplants.2018.08.008", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.tplants.2018.08.008"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-11-01T00:00:00Z"}}, {"id": "10.1016/j.xplc.2020.100104", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:17:06Z", "type": "Journal Article", "created": "2020-08-21", "title": "No Home without Hormones: How Plant Hormones Control Legume Nodule Organogenesis", "description": "The establishment of symbiotic nitrogen fixation requires the coordination of both nodule development and infection events. Despite the evolution of a variety of anatomical structures, nodule organs serve\u00a0a common purpose in establishing a localized area that facilitates efficient nitrogen fixation. As in all plant developmental processes, the establishment of a new nodule organ is regulated by plant hormones. During nodule initiation, regulation of plant hormone signaling is one of the major targets of symbiotic signaling. We review the role of major developmental hormones in the initiation of the nodule organ and argue that the manipulation of plant hormones is a key requirement for engineering nitrogen fixation in non-legumes as the basis for improved food security and sustainability.", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Cytokinins", "hormones", "nodule", "Fabaceae", "legume", "Review Article", "Ethylenes", "Plant Root Nodulation", "symbiosis", "Gibberellins", "03 medical and health sciences", "Plant Growth Regulators", "nitrogen fixation", "Nitrogen Fixation", "Symbiosis"]}, "links": [{"href": "https://doi.org/10.1016/j.xplc.2020.100104"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Communications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.xplc.2020.100104", "name": "item", "description": "10.1016/j.xplc.2020.100104", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.xplc.2020.100104"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-09-01T00:00:00Z"}}, {"id": "10.1038/nature01051", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:17:28Z", "type": "Journal Article", "created": "2002-10-30", "title": "Quantifying Nitrogen-Fixation In Feather Moss Carpets Of Boreal Forests", "description": "Biological nitrogen (N) fixation is the primary source of N within natural ecosystems, yet the origin of boreal forest N has remained elusive. The boreal forests of Eurasia and North America lack any significant, widespread symbiotic N-fixing plants. With the exception of scattered stands of alder in early primary successional forests, N-fixation in boreal forests is considered to be extremely limited. Nitrogen-fixation in northern European boreal forests has been estimated at only 0.5 kg N ha(-1) yr(-1); however, organic N is accumulated in these ecosystems at a rate of 3 kg N ha(-1) yr(-1) (ref. 8). Our limited understanding of the origin of boreal N is unacceptable given the extent of the boreal forest region, but predictable given our imperfect knowledge of N-fixation. Herein we report on a N-fixing symbiosis between a cyanobacterium (Nostoc sp.) and the ubiquitous feather moss, Pleurozium schreberi (Bird) Mitt. that alone fixes between 1.5 and 2.0 kg N ha(-1) yr(-1) in mid- to late-successional forests of northern Scandinavia and Finland. Previous efforts have probably underestimated N-fixation potential in boreal forests.", "keywords": ["Sweden", "0106 biological sciences", "Acetylene", "Norway", "04 agricultural and veterinary sciences", "15. Life on land", "Cyanobacteria", "01 natural sciences", "Bryopsida", "Trees", "Plant Leaves", "Kinetics", "Nitrogen Fixation", "0401 agriculture", " forestry", " and fisheries", "Symbiosis", "Finland"]}, "links": [{"href": "https://doi.org/10.1038/nature01051"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/nature01051", "name": "item", "description": "10.1038/nature01051", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/nature01051"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2002-10-31T00:00:00Z"}}, {"id": "10.1038/s41467-019-14197-9", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:17:31Z", "type": "Journal Article", "created": "2020-01-24", "title": "High-quality genome sequence of white lupin provides insight into soil exploration and seed quality", "description": "Abstract<p>White lupin (Lupinus albus L.) is an annual crop cultivated for its protein-rich seeds. It is adapted to poor soils due to the production of cluster roots, which are made of dozens of determinate lateral roots that drastically improve soil exploration and nutrient acquisition (mostly phosphate). Using long-read sequencing technologies, we provide a high-quality genome sequence of a cultivated accession of white lupin (2n\uffe2\uff80\uff89=\uffe2\uff80\uff8950, 451\uffe2\uff80\uff89Mb), as well as de novo assemblies of a landrace and a wild relative. We describe a modern accession displaying increased soil exploration capacity through early establishment of lateral and cluster roots. We also show how seed quality may have been impacted by domestication in term of protein profiles and alkaloid content. The availability of a high-quality genome assembly together with companion genomic and transcriptomic resources will enable the development of modern breeding strategies to increase and stabilize white lupin yield.</p>", "keywords": ["Repetitive Sequences", " Nucleic Acid/genetics", "0301 basic medicine", "[SDV]Life Sciences [q-bio]", "Plant Roots/genetics", "Gene Dosage", "Plant Science", "Crop", "Alkaloids/chemistry", "Plant Roots", "Gene", "Repetitive Sequences", "630", "Agricultural and Biological Sciences", "Domestication", "Soil", "Models", "Symbiotic Nitrogen Fixation in Legumes", "Gene Duplication", "[SDV.BV] Life Sciences [q-bio]/Vegetal Biology", "http://aims.fao.org/aos/agrovoc/c_3224", "Plant Proteins/metabolism", "Plant Proteins", "2. Zero hunger", "0303 health sciences", "Genome", "Q", "http://aims.fao.org/aos/agrovoc/c_27583", "Life Sciences", "Transcriptome/genetics", "http://aims.fao.org/aos/agrovoc/c_92382", "Polymorphism", " Single Nucleotide/genetics", "Lupinus", "[SDV] Life Sciences [q-bio]", "Protein Crop", "Seeds", "http://aims.fao.org/aos/agrovoc/c_5956", "White (mutation)", "Single Nucleotide/genetics", "Sequence Analysis", "Genome", " Plant", "expression des g\u00e8nes", "http://aims.fao.org/aos/agrovoc/c_4464", "Synteny/genetics", "Evolution", "Lupin Seeds", "Science", "Centromere", "Lupinus/genetics", "Polymorphism", " Single Nucleotide", "Article", "g\u00e9nomique", "Evolution", " Molecular", "Evolution and Nutritional Properties of Lupin Seeds", "physiologie v\u00e9g\u00e9tale", "03 medical and health sciences", "Alkaloids", "Genetic", "Nucleic Acid/genetics", "Seeds/physiology", "Centromere/genetics", "Genetics", "[SDV.BV]Life Sciences [q-bio]/Vegetal Biology", "Polymorphism", "Biology", "Ecology", " Evolution", " Behavior and Systematics", "Repetitive Sequences", " Nucleic Acid", "Sequence assembly", "http://aims.fao.org/aos/agrovoc/c_25189", "Ecotype", "Models", " Genetic", "g\u00e9nome", "Botany", "Molecular", "Genetic Variation", "Molecular Sequence Annotation", "Plant", "DNA", "Sequence Analysis", " DNA", "s\u00e9quence nucl\u00e9otidique", "15. Life on land", "http://aims.fao.org/aos/agrovoc/c_27527", "Agronomy", "Plant Leaves", "Evolution and Ecology of Endophyte-Grass Symbiosis", "Lupinus albus", "FOS: Biological sciences", "Genomic Structural Variation", "Plant Leaves/metabolism", "Gene expression", "Transcriptome", "am\u00e9lioration des plantes"]}, "links": [{"href": "https://www.nature.com/articles/s41467-019-14197-9.pdf"}, {"href": "https://doi.org/10.1038/s41467-019-14197-9"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Communications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41467-019-14197-9", "name": "item", "description": "10.1038/s41467-019-14197-9", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41467-019-14197-9"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-01-24T00:00:00Z"}}, {"id": "10.1186/s12870-018-1411-5", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:19:12Z", "type": "Journal Article", "created": "2018-09-20", "title": "Root inoculation with Azotobacter chroococcum 76A enhances tomato plants adaptation to salt stress under low N conditions", "description": "The emerging roles of rhizobacteria in improving plant nutrition and stress protection have great potential for sustainable use in saline soils. We evaluated the function of the salt-tolerant strain Azotobacter chroococcum 76A as stress protectant in an important horticultural crop, tomato. Specifically we hypothesized that treatment of tomato plants with A. chroococcum 76A could improve plant performance under salinity stress and sub-optimal nutrient regimen.Inoculation of Micro Tom tomato plants with A. chroococcum 76A increased numerous growth parameters and also conferred protective effects under both moderate (50\u00a0mM NaCl) and severe (100\u00a0mM NaCl) salt stresses. These benefits were mostly observed under reduced nutrient regimen and were less appreciable in optimal nitrogen conditions. Therefore, the efficiency of A. chroococcum 76A was found to be dependent on the nutrient status of the rhizosphere. The expression profiles of LEA genes indicated that A. chroococcum 76A treated plants were more responsive to stress stimuli when compared to untreated controls. However, transcript levels of key nitrogen assimilation genes revealed that the optimal nitrogen regimen, in combination with the strain A. chroococcum 76A, may have saturated plant's ability to assimilate nitrogen.Roots inoculation with A. chroococcum 76A tomato promoted tomato plant growth, stress tolerance and nutrient assimilation efficiency under moderate and severe salinity. Inoculation with beneficial bacteria such as A. chroococcum 76A may be an ideal solution for low-input systems, where environmental constraints and limited chemical fertilization may affect the potential yield.", "keywords": ["0301 basic medicine", "Salinity", "Nitrogen", "Physiological", "Plant Science", "Plant Roots", "Tomato", "Micro tom", "03 medical and health sciences", "Solanum lycopersicum", "Gene Expression Regulation", " Plant", "Azotobacter chroococcum; Micro tom; Plant nutrition; Rhizobacteria; Salinity; Tomato; Adaptation", " Physiological; Azotobacter; Gene Expression Regulation", " Plant; Lycopersicon esculentum; Nitrogen; Plant Leaves; Plant Roots; Rhizosphere; Salt Tolerance; Symbiosis; Plant Science", "Rhizobacteria", "Adaptation", "Lycopersicon esculentum", "Plant nutrition", "Symbiosis", "2. Zero hunger", "0303 health sciences", "Botany", "Plant", "Salt Tolerance", "15. Life on land", "Adaptation", " Physiological", "6. Clean water", "3. Good health", "Plant Leaves", "Gene Expression Regulation", "QK1-989", "Azotobacter", "Rhizosphere", "Azotobacter chroococcum", "Research Article"]}, "links": [{"href": "https://www.iris.unina.it/bitstream/11588/728072/2/VanOosten2018_Article_RootInoculationWithAzotobacter.pdf"}, {"href": "http://link.springer.com/content/pdf/10.1186/s12870-018-1411-5.pdf"}, {"href": "https://doi.org/10.1186/s12870-018-1411-5"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/BMC%20Plant%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1186/s12870-018-1411-5", "name": "item", "description": "10.1186/s12870-018-1411-5", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1186/s12870-018-1411-5"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-09-20T00:00:00Z"}}, {"id": "10.1038/s41467-023-42911-1", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:17:32Z", "type": "Journal Article", "created": "2023-11-07", "title": "Single-cell analysis identifies genes facilitating rhizobium infection in Lotus japonicus", "description": "Abstract<p>Legume-rhizobium signaling during establishment of symbiotic nitrogen fixation restricts rhizobium colonization to specific cells. A limited number of root hair cells allow infection threads to form, and only a fraction of the epidermal infection threads progress to cortical layers to establish functional nodules. Here we use single-cell analysis to define the epidermal and cortical cell populations that respond to and facilitate rhizobium infection. We then identify high-confidence nodulation gene candidates based on their specific expression in these populations, pinpointing genes stably associated with infection across genotypes and time points. We show that one of these, which we name SYMRKL1, encodes a protein with an ectodomain predicted to be nearly identical to that of SYMRK and is required for normal infection thread formation. Our work disentangles cellular processes and transcriptional modules that were previously confounded due to lack of cellular resolution, providing a more detailed understanding of symbiotic interactions.</p", "keywords": ["Rhizobium/metabolism", "Science", "Q", "Plant Roots/metabolism", "Plant Proteins/genetics", "Plant Roots", "Article", "Root Nodules", " Plant/metabolism", "Symbiosis/genetics", "Phenotype", "Lotus/metabolism", "Gene Expression Regulation", " Plant", "Lotus", "Single-Cell Analysis", "Root Nodules", " Plant", "Symbiosis", "Rhizobium", "Plant Proteins"]}, "links": [{"href": "https://www.nature.com/articles/s41467-023-42911-1.pdf"}, {"href": "https://doi.org/10.1038/s41467-023-42911-1"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Communications", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41467-023-42911-1", "name": "item", "description": "10.1038/s41467-023-42911-1", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41467-023-42911-1"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-11-07T00:00:00Z"}}, {"id": "10.1038/s41579-020-0402-3", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:17:34Z", "type": "Journal Article", "created": "2020-07-21", "title": "Unique and common traits in mycorrhizal symbioses", "description": "Mycorrhizas are among the most important biological interkingdom interactions, as they involve ~340,000 land plants and ~50,000 taxa of soil fungi. In these mutually beneficial interactions, fungi receive photosynthesis-derived carbon and provide the host plant with mineral nutrients such as phosphorus and nitrogen in exchange. More than 150 years of research on mycorrhizas has raised awareness of their biology, biodiversity and ecological impact. In this Review, we focus on recent phylogenomic, molecular and cell biology studies to present the current state of knowledge of the origin of mycorrhizal fungi and the evolutionary history of their relationship with land plants. As mycorrhizas feature a variety of phenotypes, depending on partner taxonomy, physiology and cellular interactions, we explore similarities and differences between mycorrhizal types. During evolution, mycorrhizal fungi have refined their biotrophic capabilities to take advantage of their hosts as food sources and protective niches, while plants have developed multiple strategies to accommodate diverse fungal symbionts. Intimate associations with pervasive ecological success have originated at the crossroads between these two evolutionary pathways. Our understanding of the biological processes underlying these symbioses, where fungi act as biofertilizers and bioprotectors, provides the tools to design biotechnological applications addressing environmental and agricultural challenges.", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "03 medical and health sciences", "Mycorrhizae", "15. Life on land", "Symbiosis", "Biological Evolution", "Phylogeny", "Signal Transduction"]}, "links": [{"href": "https://iris.unito.it/bitstream/2318/1758325/1/NatRevpreprint.pdf"}, {"href": "http://www.nature.com/articles/s41579-020-0402-3.pdf"}, {"href": "https://doi.org/10.1038/s41579-020-0402-3"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature%20Reviews%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41579-020-0402-3", "name": "item", "description": "10.1038/s41579-020-0402-3", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41579-020-0402-3"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-07-21T00:00:00Z"}}, {"id": "10.1038/s41586-024-07607-6", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:17:35Z", "type": "Journal Article", "created": "2024-06-26", "title": "Zinc mediates control of nitrogen fixation via transcription factor filamentation", "description": "Abstract<p>Plants adapt to fluctuating environmental conditions by adjusting their metabolism and gene expression to maintain fitness1. In legumes, nitrogen homeostasis is maintained by balancing nitrogen acquired from soil resources with nitrogen fixation by symbiotic bacteria in root nodules2\uffe2\uff80\uff938. Here we show that zinc, an essential plant micronutrient, acts as an intracellular second messenger that connects environmental changes to transcription factor control of metabolic activity in root nodules. We identify a transcriptional regulator, FIXATION UNDER NITRATE (FUN), which acts as a sensor, with zinc controlling the transition between an inactive filamentous megastructure and an active transcriptional regulator. Lower zinc concentrations in the nodule, which we show occur in response to higher levels of soil nitrate, dissociates the filament and activates FUN. FUN then directly targets multiple pathways to initiate breakdown of the nodule. The zinc-dependent filamentation mechanism thus establishes a concentration readout to adapt nodule function to the environmental nitrogen conditions. In a wider perspective, these results have implications for understanding the roles of metal ions in integration of environmental signals with plant development and optimizing delivery of fixed nitrogen in legume crops.</p", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Nitrates", "Nitrogen", "Second Messenger Systems", "Article", "Zinc", "03 medical and health sciences", "Plant signalling", "Gene Expression Regulation", " Plant", "Nitrogen Fixation", "Lotus", "Root Nodules", " Plant", "Symbiosis", "Rhizobial symbiosis", "Plant Proteins", "Transcription Factors"]}, "links": [{"href": "https://doi.org/10.1038/s41586-024-07607-6"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Nature", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s41586-024-07607-6", "name": "item", "description": "10.1038/s41586-024-07607-6", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s41586-024-07607-6"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-06-26T00:00:00Z"}}, {"id": "10.1038/s42003-022-04178-y", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:17:37Z", "type": "Journal Article", "created": "2022-11-17", "title": "Both abundant and rare fungi colonizing Fagus sylvatica ectomycorrhizal root-tips shape associated bacterial communities", "description": "Abstract<p>Ectomycorrhizal fungi live in close association with their host plants and form complex interactions with bacterial/archaeal communities in soil. We investigated whether abundant or rare ectomycorrhizal fungi on root-tips of young beech trees (Fagus sylvatica) shape bacterial/archaeal communities. We sequenced 16S rRNA genes and fungal internal transcribed spacer regions of individual root-tips and used ecological networks to detect the tendency of certain assemblies of fungal and bacterial/archaeal taxa to inhabit the same root-tip (i.e. modularity). Individual ectomycorrhizal root-tips hosted distinct fungal communities associated with unique bacterial/archaeal communities. The structure of the fungal-bacterial/archaeal association was determined by both, dominant and rare fungi. Integrating our data in a conceptual framework suggests that the effect of rare fungi on the bacterial/archaeal communities of ectomycorrhizal root-tips contributes to assemblages of bacteria/archaea on root-tips. This highlights the potential impact of complex fine-scale interactions between root-tip associated fungi and other soil microorganisms for the ectomycorrhizal symbiosis.</p", "keywords": ["0301 basic medicine", "QH301-705.5", "Fungal ecology; Microbial ecology; Symbiosis", "microbial ecology", "Plant Roots", "Article", "Microbial ecology", "Soil", "03 medical and health sciences", "Mycorrhizae", "RNA", " Ribosomal", " 16S", "Fagus", "Biology (General)", "106026 Ecosystem research", "Fungal ecology", "Symbiosis", "Soil Microbiology", "106022 Mikrobiologie", "0303 health sciences", "Bacteria", "15. Life on land", "Archaea", "symbiosis", "106026 \u00d6kosystemforschung", "fungal ecology", "106022 Microbiology"]}, "links": [{"href": "https://www.nature.com/articles/s42003-022-04178-y.pdf"}, {"href": "https://doi.org/10.1038/s42003-022-04178-y"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Communications%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1038/s42003-022-04178-y", "name": "item", "description": "10.1038/s42003-022-04178-y", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1038/s42003-022-04178-y"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-11-17T00:00:00Z"}}, {"id": "10.1093/ismejo/wrae012", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:18:13Z", "type": "Journal Article", "created": "2024-01-29", "title": "Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth", "description": "Abstract                <p>Microorganisms colonizing plant roots co-exist in complex, spatially structured multispecies biofilm communities. However, little is known about microbial interactions and the underlying spatial organization within biofilm communities established on plant roots. Here, a well-established four-species biofilm model (Stenotrophomonas rhizophila, Paenibacillus amylolyticus, Microbacterium oxydans, and Xanthomonas retroflexus, termed as SPMX) was applied to Arabidopsis roots to study the impact of multispecies biofilm on plant growth and the community spatial dynamics on the roots. SPMX co-culture notably promoted root development and plant biomass. Co-cultured SPMX increased root colonization and formed multispecies biofilms, structurally different from those formed by monocultures. By combining 16S rRNA gene amplicon sequencing and fluorescence in situ hybridization with confocal laser scanning microscopy, we found that the composition and spatial organization of the four-species biofilm significantly changed over time. Monoculture P. amylolyticus colonized plant roots poorly, but its population and root colonization were highly enhanced when residing in the four-species biofilm. Exclusion of P. amylolyticus from the community reduced overall biofilm production and root colonization of the three species, resulting in the loss of the plant growth-promoting effects. Combined with spatial analysis, this led to identification of P. amylolyticus as a keystone species. Our findings highlight that weak root colonizers may benefit from mutualistic interactions in complex communities and hereby become important keystone species impacting community spatial organization and function. This work expands the knowledge on spatial organization uncovering interspecific interactions in multispecies biofilm communities on plant roots, beneficial for harnessing microbial mutualism promoting plant growth.</p", "keywords": ["0301 basic medicine", "0303 health sciences", "mutualism", "multispecies biofilms", "plant growth", "15. Life on land", "interspecies interactions", "03 medical and health sciences", "RNA", " Ribosomal", " 16S", "Biofilms", "Microbial Interactions", "Original Article", "Symbiosis", "In Situ Hybridization", " Fluorescence", "keystone species", "spatial organization"]}, "links": [{"href": "https://academic.oup.com/ismej/article-pdf/18/1/wrae012/56945954/wrae012.pdf"}, {"href": "https://doi.org/10.1093/ismejo/wrae012"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/The%20ISME%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/ismejo/wrae012", "name": "item", "description": "10.1093/ismejo/wrae012", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/ismejo/wrae012"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-01T00:00:00Z"}}, {"id": "10.1094/mpmi-03-24-0024-r", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:18:16Z", "type": "Journal Article", "created": "2024-06-21", "title": "Rhizobial Secretion of Truncated Exopolysaccharides Severely Impairs the Mesorhizobium-Lotus Symbiosis", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p> The symbiosis between Mesorhizobium japonicum R7A and Lotus japonicus Gifu is an important model system for investigating the role of bacterial exopolysaccharides (EPS) in plant-microbe interactions. Previously, we showed that R7A exoB mutants that are affected at an early stage of EPS synthesis and in lipopolysaccharide (LPS) synthesis induce effective nodules on L. japonicus Gifu after a delay, whereas exoU mutants affected in the biosynthesis of the EPS side chain induce small uninfected nodule primordia and are impaired in infection. The presence of a halo around the exoU mutant when grown on Calcofluor-containing media suggested the mutant secreted a truncated version of R7A EPS. A nonpolar \u0394 exoA mutant defective in the addition of the first glucose residue to the EPS backbone was also severely impaired symbiotically. Here, we used a suppressor screen to show that the severe symbiotic phenotype of the exoU mutant was due to the secretion of an acetylated pentasaccharide, as both monomers and oligomers, by the same Wzx/Wzy system that transports wild-type exopolysaccharide. We also present evidence that the \u0394 exoA mutant secretes an oligosaccharide by the same transport system, contributing to its symbiotic phenotype. In contrast, \u0394 exoYF and polar exoA and exoL mutants have a similar phenotype to exoB mutants, forming effective nodules after a delay. These studies provide substantial evidence that secreted incompatible EPS is perceived by the plant, leading to abrogation of the infection process. </p><p> [Formula: see text] Copyright \u00a9 2024 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license . </p></article>", "keywords": ["0301 basic medicine", "0303 health sciences", "exo mutants", "exopolysaccharide secretion", "Polysaccharides", " Bacterial", "Botany", "Mesorhizobium", "Microbiology", "QR1-502", "03 medical and health sciences", "Bacterial Proteins", "QK1-989", "Mutation", "Mesorhizobium-Lotus symbiosis", "Lotus", "truncated exopolysaccharide", "Symbiosis", "Root Nodules", " Plant"]}, "links": [{"href": "https://doi.org/10.1094/mpmi-03-24-0024-r"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Molecular%20Plant-Microbe%20Interactions%C2%AE", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1094/mpmi-03-24-0024-r", "name": "item", "description": "10.1094/mpmi-03-24-0024-r", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1094/mpmi-03-24-0024-r"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-09-01T00:00:00Z"}}, {"id": "10.1111/1365-2435.12329", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:18:25Z", "type": "Journal Article", "created": "2014-09-05", "title": "Interactive Effects Of C, N And P Fertilization On Soil Microbial Community Structure And Function In An Amazonian Rain Forest", "description": "Summary<p>   <p>Resource control over abundance, structure and functional diversity of soil microbial communities is a key determinant of soil processes and related ecosystem functioning. Copiotrophic organisms tend to be found in environments which are rich in nutrients, particularly carbon, in contrast to oligotrophs, which survive in much lower carbon concentrations.</p>  <p>We hypothesized that microbial biomass, activity and community structure in nutrient\uffe2\uff80\uff90poor soils of an Amazonian rain forest are limited by multiple elements in interaction. We tested this hypothesis with a fertilization experiment by adding C (as cellulose), N (as urea) and P (as phosphate) in all possible combinations to a total of 40 plots of an undisturbed tropical forest in French Guiana.</p>  <p>After 2\uffc2\uffa0years of fertilization, we measured a 47% higher biomass, a 21% increase in substrate\uffe2\uff80\uff90induced respiration rate and a 5\uffe2\uff80\uff90fold higher rate of decomposition of cellulose paper discs of soil microbial communities that grew in P\uffe2\uff80\uff90fertilized plots compared to plots without P fertilization. These responses were amplified with a simultaneous C fertilization suggesting P and C colimitation of soil micro\uffe2\uff80\uff90organisms at our study site.</p>  <p>Moreover, P fertilization modified microbial community structure (PLFAs) to a more copiotrophic bacterial community indicated by a significant decrease in the Gram\uffe2\uff80\uff90positive\uffc2\uffa0:\uffc2\uffa0Gram\uffe2\uff80\uff90negative ratio. The Fungi\uffc2\uffa0:\uffc2\uffa0Bacteria ratio increased in N fertilized plots, suggesting that fungi are relatively more limited by N than bacteria. Changes in microbial community structure did not affect rates of general processes such as glucose mineralization and cellulose paper decomposition. In contrast, community level physiological profiles under P fertilization combined with either C or N fertilization or both differed strongly from all other treatments, indicating functionally different microbial communities.</p>  <p>While P appears to be the most critical from the three major elements we manipulated, the strongest effects were observed in combination with either supplementary C or N addition in support of multiple element control on soil microbial functioning and community structure.</p>  <p>We conclude that the soil microbial community in the studied tropical rain forest and the processes it drives is finely tuned by the relative availability in C, N and P. Any shifts in the relative abundance of these key elements may affect spatial and temporal heterogeneity in microbial community structure, their associated functions and the dynamics of C and nutrients in tropical ecosystems.</p>  </p>", "keywords": ["tropical forest", "2. Zero hunger", "570", "phospholipid fatty acids (PLFA)", "[SDE.MCG]Environmental Sciences/Global Changes", "functional significance", "[SDV.EE.IEO] Life Sciences [q-bio]/Ecology", " environment/Symbiosis", "04 agricultural and veterinary sciences", "15. Life on land", "16. Peace & justice", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "[SDE.MCG] Environmental Sciences/Global Changes", "13. Climate action", "microbial community structure", "ecosystem functioning", "environment/Symbiosis", "[SDV.EE.ECO]Life Sciences [q-bio]/Ecology", "[SDV.EE.ECO] Life Sciences [q-bio]/Ecology", " environment/Ecosystems", "[SDV.EE.IEO]Life Sciences [q-bio]/Ecology", "0401 agriculture", " forestry", " and fisheries", "multiple resource limitation", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "phosphorus", "environment/Ecosystems", "soil functioning"]}, "links": [{"href": "https://doi.org/10.1111/1365-2435.12329"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Functional%20Ecology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/1365-2435.12329", "name": "item", "description": "10.1111/1365-2435.12329", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/1365-2435.12329"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2014-09-29T00:00:00Z"}}, {"id": "10.1111/j.1469-8137.2005.01444.x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:18:48Z", "type": "Journal Article", "created": "2005-07-05", "title": "Legume Species Identity And Soil Nitrogen Supply Determine Symbiotic Nitrogen-Fixation Responses To Elevated Atmospheric [Co2]", "description": "In nitrogen (N)-limited systems, the response of symbiotic N fixation to elevated atmospheric [CO2] may be an important determinant of ecosystem responses to this global change. Experimental tests of the effects of elevated [CO2] have not been consistent. Although rarely tested, differences among legume species and N supply may be important. In a field free-air CO2 enrichment (FACE) experiment, we determined, for four legume species, whether the effects of elevated atmospheric [CO2] on symbiotic N fixation depended on soil N availability or species identity. Natural abundance and pool-dilution 15N methods were used to estimate N fixation. Although N addition did, in general, decrease N fixation, contrary to theoretical predictions, elevated [CO2] did not universally increase N fixation. Rather, the effect of elevated [CO2] on N fixation was positive, neutral or negative, depending on the species and N addition. Our results suggest that legume species identity and N supply are critical factors in determining symbiotic N-fixation responses to increased atmospheric [CO2].", "keywords": ["0106 biological sciences", "Atmosphere", "Nitrogen", "Minnesota", "Fabaceae", "04 agricultural and veterinary sciences", "Carbon Dioxide", "15. Life on land", "01 natural sciences", "Soil", "Species Specificity", "13. Climate action", "Nitrogen Fixation", "0401 agriculture", " forestry", " and fisheries", "Symbiosis"]}, "links": [{"href": "https://doi.org/10.1111/j.1469-8137.2005.01444.x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/j.1469-8137.2005.01444.x", "name": "item", "description": "10.1111/j.1469-8137.2005.01444.x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/j.1469-8137.2005.01444.x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2005-04-28T00:00:00Z"}}, {"id": "10.1126/science.ade9204", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:19:02Z", "type": "Journal Article", "created": "2023-01-19", "title": "Nanobody-driven signaling reveals the core receptor complex in root nodule symbiosis", "description": "<p>             Understanding the composition and activation of multicomponent receptor complexes is a challenge in biology. To address this, we developed a synthetic approach based on nanobodies to drive assembly and activation of cell surface receptors and apply the concept by manipulating receptors that govern plant symbiosis with nitrogen-fixing bacteria. We show that the             Lotus japonicus             Nod factor receptors NFR1 and NFR5 constitute the core receptor complex initiating the cortical root nodule organogenesis program as well as the epidermal program controlling infection. We find that organogenesis signaling is mediated by the intracellular kinase domains whereas infection requires functional ectodomains. Finally, we identify evolutionarily distant barley receptors that activate root nodule organogenesis, which could enable engineering of biological nitrogen-fixation into cereals.           </p", "keywords": ["Lipopolysaccharides", "0301 basic medicine", "0303 health sciences", "Cell Membrane/metabolism", "Cell Membrane", "Single-Domain Antibodies", "Plant Proteins/genetics", "Symbiosis/physiology", "Root Nodules", " Plant/metabolism", "03 medical and health sciences", "Gene Expression Regulation", " Plant", "Medicago truncatula", "Lotus", "Root Nodules", " Plant", "Symbiosis", "Lipopolysaccharides/metabolism", "Plant Proteins", "Signal Transduction"]}, "links": [{"href": "https://www.science.org/doi/pdf/10.1126/science.ade9204"}, {"href": "https://doi.org/10.1126/science.ade9204"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1126/science.ade9204", "name": "item", "description": "10.1126/science.ade9204", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1126/science.ade9204"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-20T00:00:00Z"}}, {"id": "10.1111/nph.15230", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:18:56Z", "type": "Journal Article", "created": "2018-05-28", "title": "Partner communication and role of nutrients in the arbuscular mycorrhizal symbiosis", "description": "<p>         Contents      Summary 1031   I. Introduction 1031   II. Interkingdom communication enabling symbiosis 1032   III. Nutritional and regulatory roles for key metabolites in the AM symbiosis 1035   IV. The plant\uffe2\uff80\uff93fungus genotype combination determines the outcome of the symbiosis 1039   V. Perspectives 1039    Acknowledgements 1041    References 1041      </p>Summary<p>The evolutionary and ecological success of the arbuscular mycorrhizal (AM) symbiosis relies on an efficient and multifactorial communication system for partner recognition, and on a fine\uffe2\uff80\uff90tuned and reciprocal metabolic regulation of each symbiont to reach an optimal functional integration. Besides strigolactones, N\uffe2\uff80\uff90acetylglucosamine\uffe2\uff80\uff90derivatives released by the plant were recently suggested to trigger fungal reprogramming at the pre\uffe2\uff80\uff90contact stage. Remarkably, N\uffe2\uff80\uff90acetylglucosamine\uffe2\uff80\uff90based diffusible molecules also are symbiotic signals produced by AM fungi (AMF) and clues on the mechanisms of their perception by the plant are emerging. AMF genomes and transcriptomes contain a battery of putative effector genes that may have conserved and AMF\uffe2\uff80\uff90 or host plant\uffe2\uff80\uff90specific functions. Nutrient exchange is the key feature of AM symbiosis. A mechanism of phosphate transport inside fungal hyphae has been suggested, and first insights into the regulatory mechanisms of root colonization in accordance with nutrient transfer and status were obtained. The recent discovery of the dependency of AMF on fatty acid transfer from the host has offered a convincing explanation for their obligate biotrophism. Novel studies highlighted the importance of plant and fungal genotypes for the outcome of the symbiosis. These findings open new perspectives for fundamental research and application of AMF in agriculture.</p>", "keywords": ["0301 basic medicine", "2. Zero hunger", "0303 health sciences", "Nitrogen", "Phosphorus", "Plants", "15. Life on land", "symbiosis", "lipids", "03 medical and health sciences", "nutrients", "Mycorrhizae", "arbuscular mycorrhizal fungi (AMF)", "Metabolome", "natural variation", "signalling", "Symbiosis", "effectors", "phosphate"]}, "links": [{"href": "https://iris.unito.it/bitstream/2318/1667502/1/Pre-print%20IRIS_%20review%20New%20Phytol%202018.pdf"}, {"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.15230"}, {"href": "https://doi.org/10.1111/nph.15230"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.15230", "name": "item", "description": "10.1111/nph.15230", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.15230"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-05-28T00:00:00Z"}}, {"id": "10.1111/nph.18118", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:18:57Z", "type": "Journal Article", "created": "2022-03-26", "title": "Deciphering the role of specialist and generalist plant\u2013microbial interactions as drivers of plant\u2013soil feedback", "description": "Summary<p>Feedback between plants and soil microbial communities can be a powerful driver of vegetation dynamics. Plants elicit changes in the soil microbiome that either promote or suppress conspecifics at the same location, thereby regulating population density\uffe2\uff80\uff90dependence and species co\uffe2\uff80\uff90existence. Such effects are often attributed to the accumulation of host\uffe2\uff80\uff90specific antagonistic or beneficial microbiota in the rhizosphere. However, the identity and host\uffe2\uff80\uff90specificity of the microbial taxa involved are rarely empirically assessed. Here we review the evidence for host\uffe2\uff80\uff90specificity in plant\uffe2\uff80\uff90associated microbes and propose that specific plant\uffe2\uff80\uff93soil feedbacks can also be driven by generalists. We outline the potential mechanisms by which generalist microbial pathogens, mutualists and decomposers can generate differential effects on plant hosts and synthesize existing evidence to predict these effects as a function of plant investments into defence, microbial mutualists and dispersal. Importantly, the capacity of generalist microbiota to drive plant\uffe2\uff80\uff93soil feedbacks depends not only on the traits of individual plants but also on the phylogenetic and functional diversity of plant communities. Identifying factors that promote specialization or generalism in plant\uffe2\uff80\uff93microbial interactions and thereby modulate the impact of microbiota on plant performance will advance our understanding of the mechanisms underlying plant\uffe2\uff80\uff93soil feedback and the ways it contributes to plant co\uffe2\uff80\uff90existence.</p", "keywords": ["0106 biological sciences", "0301 basic medicine", "570", "Physiology", "Plant Science", "litter decomposition", "plant\u2013soil interactions", "root exudates", "Plant Roots", "01 natural sciences", "Feedback", "Soil", "03 medical and health sciences", "Taverne", "functional traits", "Symbiosis", "Phylogeny", "Soil Microbiology", "580", "2. Zero hunger", "generalist microbiota", "Plants", "15. Life on land", "mycorrhizal fungi", "Rhizosphere", "fungal pathogens", "host-specificity"]}, "links": [{"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.18118"}, {"href": "https://doi.org/10.1111/nph.18118"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.18118", "name": "item", "description": "10.1111/nph.18118", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.18118"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-04-16T00:00:00Z"}}, {"id": "10.1111/nph.18264", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:18:57Z", "type": "Journal Article", "created": "2022-06-10", "title": "Biotic and abiotic controls of nitrogen fixation in cyanobacteria\u2013moss associations", "description": "Summary<p>Most mosses are colonized by nitrogen (N)\uffe2\uff80\uff90fixing cyanobacteria. This discovery is relatively recent, which can explain the large knowledge gaps the field is now tackling. For instance, while we have a good understanding of the abiotic controls (e.g. nutrient availability, increased temperature), we still do not know much about the biotic controls of N2 fixation in mosses. I propose here that we should endeavour to position moss\uffe2\uff80\uff93cyanobacteria associations along the mutualism\uffe2\uff80\uff93parasitism continuum under varying abiotic conditions (e.g. nutrient availability). This would finally unravel the nature of the relationship between the partners and will be a big leap in our understanding of the evolution of plant\uffe2\uff80\uff93bacteria interactions using moss\uffe2\uff80\uff93cyanobacteria associations as a model system.</p", "keywords": ["0301 basic medicine", "nutrient limitation", "0303 health sciences", "Nitrogen", "Bryophyta", "15. Life on land", "Cyanobacteria", "cyanobacteria", "symbiosis", "mosses", "03 medical and health sciences", "climate change", "nitrogen fixation", "Nitrogen Fixation", "DEPOSITION", "Symbiosis"], "contacts": [{"organization": "Rousk, Kathrin", "roles": ["creator"]}]}, "links": [{"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.18264"}, {"href": "https://doi.org/10.1111/nph.18264"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.18264", "name": "item", "description": "10.1111/nph.18264", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.18264"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-06-10T00:00:00Z"}}, {"id": "10.1111/nph.20145", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:18:57Z", "type": "Journal Article", "created": "2024-10-01", "title": "What determines transfer of carbon from plants to mycorrhizal fungi?", "description": "Summary<p>Biological Market Models are common evolutionary frameworks to understand the maintenance of mutualism in mycorrhizas. \uffe2\uff80\uff98Surplus C\uffe2\uff80\uff99 hypotheses provide an alternative framework where stoichiometry and source\uffe2\uff80\uff93sink dynamics govern mycorrhizal function. A critical difference between these frameworks is whether carbon transfer from plants is regulated by nutrient transfer from fungi or through source\uffe2\uff80\uff93sink dynamics. In this review, we: provide a historical perspective; summarize studies that asked whether plants transfer more carbon to fungi that transfer more nutrients; conduct a meta\uffe2\uff80\uff90analysis to assess whether mycorrhizal plant growth suppressions are related to carbon transfer; and review literature on cellular mechanisms for carbon transfer. In sum, current knowledge does not indicate that carbon transfer from plants is directly regulated by nutrient delivery from fungi. Further, mycorrhizal plant growth responses were linked to nutrient uptake rather than carbon transfer. These findings are more consistent with \uffe2\uff80\uff98Surplus C\uffe2\uff80\uff99 hypotheses than Biological Market Models. However, we also identify research gaps, and future research may uncover a mechanism directly linking carbon and nutrient transfer. Until then, we urge caution when applying economic terminology to describe mycorrhizas. We present a synthesis of ideas, consider knowledge gaps, and suggest experiments to advance the field.</p", "keywords": ["106022 Mikrobiologie", "sanctions and rewards", "membrane transport", "comparative advantage", "Biological Transport", "mycorrhizas", "transporters", "Plants", "symbiosis", "Carbon", "106026 \u00d6kosystemforschung", "Mycorrhizae", "functional equilibrium", "106022 Microbiology", "106026 Ecosystem research", "Symbiosis", "shading"], "contacts": [{"organization": "Rebecca A. Bunn, Ana Corr\u00eaa, Jaya Joshi, Christina Kaiser, Ylva Lekberg, Cindy E. Prescott, Anna Sala, Justine Karst,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1111/nph.20145"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.20145", "name": "item", "description": "10.1111/nph.20145", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.20145"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-10-01T00:00:00Z"}}, {"id": "10.1126/sciadv.adj8016", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:19:01Z", "type": "Journal Article", "created": "2023-11-29", "title": "Connecting the multiple dimensions of global soil fungal diversity", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering the management of this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate the distributions and drivers of different levels of taxonomic and phylogenetic diversity of fungi and their ecological groups. We show the impact of precipitation and temperature interactions on local fungal species richness (alpha diversity) across different climates. Our findings reveal how temperature drives fungal compositional turnover (beta diversity) and phylogenetic diversity, linking them with regional species richness (gamma diversity). We integrate fungi into the principles of global biodiversity distribution and present detailed maps for biodiversity conservation and modeling of global ecological processes.</p></article>", "keywords": ["Supplementary Data", "biodiversity", " fungi", " ecology", "QH301 Biology", "Diversity (politics)", "Plant Science", "Biodiversity conservation", "Fungal Diversity", "Agricultural and Biological Sciences", "Soil", "Life", "Sociology", "WATER", "Global biodiversity distribution", "Fungal diversity", "Phylogeny", "Soil Microbiology", "2. Zero hunger", "Multidisciplinary", "Earth", " Environmental", " Ecological", " and Space Sciences", "Geography", "Ecology", "soil fungal diversity", "4. Education", "SPECIES RICHNESS", "Life Sciences", "https://www.science.org/doi/suppl/10.1126/sciadv.adj8016/suppl_file/sciadv.adj8016_sm.pdf", "Biodiversity", "FOS: Sociology", "global biodiversity distribution", "sienet", "https://www.science.org/doi/suppl/10.1126/sciadv.adj8016/suppl_file/sciadv.adj8016_tables_s1_to_s13.zip", "Diversity and Evolution of Fungal Pathogens", "570", "Supplementary Information", "DNA markers", "QH301", "Sequencing high-resolution DNA", "Biochemistry", " Genetics and Molecular Biology", "monimuotoisuus", "Mycorrhizal Fungi and Plant Interactions", "Life Science", "Humans", "14. Life underwater", "General", "Global ecological processes", "Biology", "Ecosystem", "Ecology", " Evolution", " Behavior and Systematics", "global ecological processes", "Soil fungal diversity", "microbiology", "Fungi", "Water", "Cell Biology", "15. Life on land", "luonnon monimuotoisuus", "Agronomy", "biodiversiteetti", "LIFE", "ekosysteemit (ekologia)", "Evolution and Ecology of Endophyte-Grass Symbiosis", "13. Climate action", "Ecology", " evolutionary biology", "Earth and Environmental Sciences", "FOS: Biological sciences", "Anthropology", "ta1181", "biodiversity conservation", "Species richness"]}, "links": [{"href": "https://www.science.org/doi/epdf/10.1126/sciadv.adj8016"}, {"href": "https://www.science.org/doi/pdf/10.1126/sciadv.adj8016"}, {"href": "https://doi.org/10.1126/sciadv.adj8016"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20Advances", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1126/sciadv.adj8016", "name": "item", "description": "10.1126/sciadv.adj8016", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1126/sciadv.adj8016"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-12-01T00:00:00Z"}}, {"id": "10.1371/journal.pbio.3002127", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:19:19Z", "type": "Journal Article", "created": "2023-05-18", "title": "A glycan receptor kinase facilitates intracellular accommodation of arbuscular mycorrhiza and symbiotic rhizobia in the legume Lotus japonicus", "description": "<p>Receptors that distinguish the multitude of microbes surrounding plants in the environment enable dynamic responses to the biotic and abiotic conditions encountered. In this study, we identify and characterise a glycan receptor kinase, EPR3a, closely related to the exopolysaccharide receptor EPR3. Epr3a is up-regulated in roots colonised by arbuscular mycorrhizal (AM) fungi and is able to bind glucans with a branching pattern characteristic of surface-exposed fungal glucans. Expression studies with cellular resolution show localised activation of the Epr3a promoter in cortical root cells containing arbuscules. Fungal infection and intracellular arbuscule formation are reduced in epr3a mutants. In vitro, the EPR3a ectodomain binds cell wall glucans in affinity gel electrophoresis assays. In microscale thermophoresis (MST) assays, rhizobial exopolysaccharide binding is detected with affinities comparable to those observed for EPR3, and both EPR3a and EPR3 bind a well-defined \uffce\uffb2-1,3/\uffce\uffb2-1,6 decasaccharide derived from exopolysaccharides of endophytic and pathogenic fungi. Both EPR3a and EPR3 function in the intracellular accommodation of microbes. However, contrasting expression patterns and divergent ligand affinities result in distinct functions in AM colonisation and rhizobial infection in Lotus japonicus. The presence of Epr3a and Epr3 genes in both eudicot and monocot plant genomes suggest a conserved function of these receptor kinases in glycan perception.</p", "keywords": ["570", "QH301-705.5", "ANZSRC::30 Agricultural", "MESORHIZOBIUM-LOTI", "Plant Roots", "veterinary and food sciences", "ROOT", "Polysaccharides", "Gene Expression Regulation", " Plant", "Mycorrhizae", "CELL", "Biology (General)", "Symbiosis", "Glucans", "Plant Proteins", "FUNGAL", "PERCEPTION", "ANZSRC::31 Biological sciences", "LAMINARIN", "Phosphotransferases", "500", "TRANSFORMATION", "EVOLUTION", "ANZSRC::32 Biomedical and clinical sciences", "DEFENSE RESPONSES", "Mutation", "Lotus", "EXOPOLYSACCHARIDE", "Root Nodules", " Plant", "Research Article", "Rhizobium"]}, "links": [{"href": "https://doi.org/10.1371/journal.pbio.3002127"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1371/journal.pbio.3002127", "name": "item", "description": "10.1371/journal.pbio.3002127", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1371/journal.pbio.3002127"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-05-18T00:00:00Z"}}, {"id": "10.3389/fpls.2023.1326766", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:20:37Z", "type": "Journal Article", "created": "2024-01-05", "title": "A collection of novel Lotus japonicus LORE1 mutants perturbed in the nodulation program induced by the Agrobacterium pusense strain IRBG74", "description": "<p>The Lotus japonicus population carrying new Lotus retrotransposon 1 (LORE1) insertions represents a valuable biological resource for genetic research. New insertions were generated by activation of the endogenous retroelement LORE1a in the germline of the G329-3 plant line and arranged in a 2-D system for reverse genetics. LORE1 mutants identified in this collection contributes substantially to characterize candidate genes involved in symbiotic association of L. japonicus with its cognate symbiont, the nitrogen-fixing bacteria Mesorhizobium loti that infects root nodules intracellularly. In this study we aimed to identify novel players in the poorly explored intercellular infection induced by Agrobacterium pusense IRBG74 sp. For this purpose, a forward screen of &amp;gt; 200,000 LORE1 seedlings, obtained from bulk propagation of G329-3 plants, inoculated with IRBG74 was performed. Plants with perturbed nodulation were scored and the offspring were further tested on plates to confirm the symbiotic phenotype. A total of 110 Lotus mutants with impaired nodulation after inoculation with IRBG74 were obtained. A comparative analysis of nodulation kinetics in a subset of 20 mutants showed that most of the lines were predominantly affected in nodulation by IRBG74. Interestingly, additional defects in the main root growth were observed in some mutant lines. Sequencing of LORE1 flanking regions in 47 mutants revealed that 92 Lotus genes were disrupted by novel LORE1 insertions in these lines. In the IM-S34 mutant, one of the insertions was located in the 5\uffc2\uffb4UTR of the LotjaGi5g1v0179800 gene, which encodes the AUTOPHAGY9 protein. Additional mutant alleles, named atg9-2 and atg9-3, were obtained in the reverse genetic collection. Nodule formation was significantly reduced in these mutant alleles after M. loti and IRBG74 inoculation, confirming the effectiveness of the mutant screening. This study describes an effective forward genetic approach to obtain novel mutants in Lotus with a phenotype of interest and to identify the causative gene(s).</p", "keywords": ["0301 basic medicine", "autophagy", "0303 health sciences", "03 medical and health sciences", "Lotus japonicus", "legume (nodules)", "Plant culture", "Plant Science", "mutant screening", "symbiosis", "intercellular infection", "SB1-1110"]}, "links": [{"href": "https://doi.org/10.3389/fpls.2023.1326766"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fpls.2023.1326766", "name": "item", "description": "10.3389/fpls.2023.1326766", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fpls.2023.1326766"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-01-05T00:00:00Z"}}, {"id": "10.3389/fmicb.2020.562238", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:20:34Z", "type": "Journal Article", "created": "2020-09-22", "title": "The Free-Living Stage Growth Conditions of the Endophytic Fungus Serendipita indica May Regulate Its Potential as Plant Growth Promoting Microbe", "description": "Serendipita indica (former Piriformospora indica) is a non-obligate endophytic fungus and generally a plant growth and defence promoter with high potential to be used in agriculture. However, S. indica may switch from biotrophy to saprotrophy losing its plant growth promoting traits. Our aim was to understand if the free-living stage growth conditions (namely C availability) regulate S. indica's phenotype, and its potential as plant-growth-promoting-microbe (PGPM). We grew S. indica in its free-living stage under increasing C availabilities (2-20 g L-1 of glucose or sucrose). We first characterised the effect of C availability during free-living stage growth on fungal phenotype: colonies growth and physiology (plasma membrane proton pumps, stable isotopic signatures, and potential extracellular decomposing enzymes). The effect of the C availability during the free-living stage of the PGPM was evaluated on wheat. We observed that C availability during the free-living stage regulated S. indica's growth, ultrastructure and physiology, resulting in two distinct colony phenotypes: compact and explorer. The compact phenotype developed at low C, used peptone as the major C and N source, and displayed higher decomposing potential for C providing substrates; while the explorer phenotype developed at high C, used glucose and sucrose as major C sources and casein and yeast extract as major N sources, and displayed higher decomposing potential for N and P providing substrates. The C availability, or the C/N ratio, during the free-living stage left a legacy to the symbiosis stage, regulating S. indica's potential to promote plant growth: wheat growth promotion by the explorer phenotype was \u00b1 40% higher than that by the compact phenotype. Our study highlights the importance of considering microbial ecology in designing PGPM/biofertilizers. Further studies are needed to test the phenotypes under more extreme conditions, and to understand if the in vitro acquired characteristics persist under field conditions.", "keywords": ["free-living stage", "symbiosis stage", "2. Zero hunger", "0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "fungal phenotype", "morphology", "physiology", "plant-growth-promoting-microbes", "15. Life on land", "Microbiology", "QR1-502"]}, "links": [{"href": "https://doi.org/10.3389/fmicb.2020.562238"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Microbiology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fmicb.2020.562238", "name": "item", "description": "10.3389/fmicb.2020.562238", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fmicb.2020.562238"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-09-22T00:00:00Z"}}, {"id": "10.3389/fpls.2018.01270", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:20:36Z", "type": "Journal Article", "created": "2018-09-04", "title": "Beneficial Services of Arbuscular Mycorrhizal Fungi \u2013 From Ecology to Application", "description": "Arbuscular mycorrhiza (AM) is the most common symbiotic association of plants with microbes. AM fungi occur in the majority of natural habitats and they provide a range of important ecological services, in particular by improving plant nutrition, stress resistance and tolerance, soil structure and fertility. AM fungi also interact with most crop plants including cereals, vegetables, and fruit trees, therefore, they receive increasing attention for their potential use in sustainable agriculture. Basic research of the past decade has revealed the existence of a dedicated recognition and signaling pathway that is required for AM. Furthermore, recent evidence provided new insight into the exchange of nutritional benefits between the symbiotic partners. The great potential for application of AM has given rise to a thriving industry for AM-related products for agriculture, horticulture, and landscaping. Here, we discuss new developments in these fields, and we highlight future potential and limits toward the use of AM fungi for plant production.", "keywords": ["2. Zero hunger", "0301 basic medicine", "plant protection", "0303 health sciences", "abiotic stress", "arbuscular mycorrhiza", "Plant culture", "plant nutrition", "plant growth", "Plant Science", "15. Life on land", "symbiosis", "SB1-1110", "12. Responsible consumption", "03 medical and health sciences"]}, "links": [{"href": "https://doi.org/10.3389/fpls.2018.01270"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fpls.2018.01270", "name": "item", "description": "10.3389/fpls.2018.01270", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fpls.2018.01270"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-09-04T00:00:00Z"}}, {"id": "10.3389/fpls.2021.682142", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:20:37Z", "type": "Journal Article", "created": "2021-07-21", "title": "Shifts in the Abundances of Saprotrophic and Ectomycorrhizal Fungi With Altered Leaf Litter Inputs", "description": "<p>Ectomycorrhizal (EcM) and saprotrophic fungi interact in the breakdown of organic matter, but the mechanisms underlying the EcM role on organic matter decomposition are not totally clear. We hypothesized that the ecological relations between EcM and saprotroph fungi are modulated by resources availability and accessibility, determining decomposition rates. We manipulated the amount of leaf litter inputs (No-Litter, Control Litter, Doubled Litter) on Trenched (root exclusion) and Non-Trenched plots (with roots) in a temperate deciduous forest of EcM-associated trees. Resultant shifts in soil fungal communities were determined by phospholipid fatty acids and DNA sequencing after 3 years, and CO2 fluxes were measured throughout this period. Different levels of leaf litter inputs generated a gradient of organic substrate availability and accessibility, altering the composition and ecological relations between EcM and saprotroph fungal communities. EcM fungi dominated at low levels of fresh organic substrates and lower organic matter quality, where short-distances exploration types seem to be better competitors, whereas saprotrophs and longer exploration types of EcM fungi tended to dominate at high levels of leaf litter inputs, where labile organic substrates were easily accessible. We were, however, not able to detect unequivocal signs of competition between these fungal groups for common resources. These results point to the relevance of substrate quality and availability as key factors determining the role of EcM and saprotroph fungi on litter and soil organic matter decay and represent a path forward on the capacity of organic matter decomposition of different exploration types of EcM fungi.</p", "keywords": ["Plant detritus", "0301 basic medicine", "570", "litter decomposition", "Plant Science", "630", "SB1-1110", "03 medical and health sciences", "environment/Symbiosis", "[SDV.EE.ECO] Life Sciences [q-bio]/Ecology", " environment/Ecosystems", "plant detritus", "106026 Ecosystem research", "Biology", "soil fungal communities", "0303 health sciences", "Ectomycorrhiza fungal exploration types", "ectomycorrhiza fungal exploration types", "Litter decomposition", "Plant culture", "Soil fungal communities", "[SDV.EE.IEO] Life Sciences [q-bio]/Ecology", " environment/Symbiosis", "15. Life on land", "Gadgil effect", "CO2 fluxes", "106026 \u00d6kosystemforschung", "CO fluxes", "[SDV.EE.ECO]Life Sciences [q-bio]/Ecology", "[SDV.EE.IEO]Life Sciences [q-bio]/Ecology", "environment/Ecosystems"]}, "links": [{"href": "https://doi.org/10.3389/fpls.2021.682142"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fpls.2021.682142", "name": "item", "description": "10.3389/fpls.2021.682142", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fpls.2021.682142"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-07-21T00:00:00Z"}}, {"id": "10.3389/fpls.2022.903661", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:20:37Z", "type": "Journal Article", "created": "2022-06-10", "title": "Diversity and Agronomic Performance of Lupinus mutabilis Germplasm in European and Andean Environments", "description": "<p>The introduction of Lupinus mutabilis (Andean lupin) in Europe will provide a new source of protein and oil for plant-based diets and biomass for bio-based products, while contributing to the improvement of marginal soils. This study evaluates for the first time the phenotypic variability of a large panel of L. mutabilis accessions both in their native environment and over two cropping conditions in Europe (winter crop in the Mediterranean region and summer crop in North-Central Europe), paving the way for the selection of accessions adapted to specific environments. The panel of 225 accessions included both germplasm pools from the Andean region and breeding lines from Europe. Notably, we reported higher grain yield in Mediterranean winter-cropping conditions (18 g/plant) than in the native region (9 g/plant). Instead, North European summer-cropping conditions appear more suitable for biomass production (up to 2 kg/plant). The phenotypic evaluation of 16 agronomical traits revealed significant variation in the panel. Principal component analyses pointed out flowering time, yield, and architecture-related traits as the main factors explaining variation between accessions. The Peruvian material stands out among the top-yielding accessions in Europe, characterized by early lines with high grain yield (e.g., LIB065, LIB072, and LIB155). Bolivian and Ecuadorian materials appear more valuable for the selection of genotypes for Andean conditions and for biomass production in Europe. We also observed that flowering time in the different environments is influenced by temperature accumulation. Within the panel, it is possible to identify both early and late genotypes, characterized by different thermal thresholds (600\uffc2\uffb0C\uffe2\uff80\uff93700\uffc2\uffb0C and 1,000\uffe2\uff80\uff931,200\uffc2\uffb0C GDD, respectively). Indications on top-yielding and early/late accessions, heritability of morpho-physiological traits, and their associations with grain yield are reported and remain largely environmental specific, underlining the importance of selecting useful genetic resources for specific environments. Altogether, these results suggest that the studied panel holds the genetic potential for the adaptation of L. mutabilis to Europe and provide the basis for initiating a breeding program based on exploiting the variation described herein.</p", "keywords": ["Biomass (ecology)", "0301 basic medicine", "Lupin Seeds", "Cropping", "germplasm characterization", "Plant Science", "Crop", "Plant breeding", "SB1-1110", "Evolution and Nutritional Properties of Lupin Seeds", "Agricultural and Biological Sciences", "03 medical and health sciences", "Germplasm", "Biology", "Ecology", " Evolution", " Behavior and Systematics", "2. Zero hunger", "0303 health sciences", "biomass", "Ecology", "grain yield", "Plant culture", "Life Sciences", "Genomics and Breeding of Legume Crops", "Agriculture", "15. Life on land", "Agronomy", "Lupinus", "vegetative development", "Evolution and Ecology of Endophyte-Grass Symbiosis", "Andean lupin", "breeding", "FOS: Biological sciences", "Mediterranean Basin", "Mediterranean climate", "phenotypic diversity"]}, "links": [{"href": "https://doi.org/10.3389/fpls.2022.903661"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fpls.2022.903661", "name": "item", "description": "10.3389/fpls.2022.903661", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fpls.2022.903661"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-06-10T00:00:00Z"}}, {"id": "10.3389/fpls.2022.922982", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:20:37Z", "type": "Journal Article", "created": "2022-06-23", "title": "Molecular Mechanisms of Intercellular Rhizobial Infection: Novel Findings of an Ancient Process", "description": "<p>Establishment of the root-nodule symbiosis in legumes involves rhizobial infection of nodule primordia in the root cortex that is dependent on rhizobia crossing the root epidermal barrier. Two mechanisms have been described: either through root hair infection threads or through the intercellular passage of bacteria. Among the legume genera investigated, around 75% use root hair entry and around 25% the intercellular entry mode. Root-hair infection thread-mediated infection has been extensively studied in the model legumes Medicago truncatula and Lotus japonicus. In contrast, the molecular circuit recruited during intercellular infection, which is presumably an ancient and simpler pathway, remains poorly known. In recent years, important discoveries have been made to better understand the transcriptome response and the genetic components involved in legumes with obligate (Aeschynomene and Arachis spp.) and conditional (Lotus and Sesbania spp.) intercellular rhizobial infections. This review addresses these novel findings and briefly considers possible future research to shed light on the molecular players that orchestrate intercellular infection in legumes.</p", "keywords": ["580", "0106 biological sciences", "0301 basic medicine", "nodule", "Arachis", "legumes", "[SDV.BBM]Life Sciences [q-bio]/Biochemistry", "Plant culture", "Plant Science", "01 natural sciences", "[SDV.BV.PEP]Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacy", "SB1-1110", "intercellular symbiosis", "03 medical and health sciences", "Aeschynomene", "616", "Sesbania", "[SDV.BBM] Life Sciences [q-bio]/Biochemistry", " Molecular Biology", "Lotus", "Molecular Biology", "[SDV.BV.PEP] Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacy"], "contacts": [{"organization": "Johan Quilb\u00e9, Jes\u00fas Montiel, Jes\u00fas Montiel, Jean-Fran\u00e7ois Arrighi, Jens Stougaard,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.3389/fpls.2022.922982"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fpls.2022.922982", "name": "item", "description": "10.3389/fpls.2022.922982", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fpls.2022.922982"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-06-23T00:00:00Z"}}, {"id": "10.3389/fpls.2023.1143657", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:20:37Z", "type": "Journal Article", "created": "2023-02-14", "title": "Editorial: Plant root interaction with associated microbiomes to improve plant resiliency and crop biodiversity, volume II", "keywords": ["biofertilizers", "0106 biological sciences", "biopesticides", "bioinocula safety", "Plant culture", "0401 agriculture", " forestry", " and fisheries", "plant-soil-microbiome interactions", "soil sickness", "rhizobium symbiosis", "Plant Science", "04 agricultural and veterinary sciences", "01 natural sciences", "SB1-1110"]}, "links": [{"href": "https://doi.org/10.3389/fpls.2023.1143657"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fpls.2023.1143657", "name": "item", "description": "10.3389/fpls.2023.1143657", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fpls.2023.1143657"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-02-14T00:00:00Z"}}, {"id": "10.3390/encyclopedia2030096", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:20:44Z", "type": "Journal Article", "created": "2022-08-03", "title": "Lichen as Multipartner Symbiotic Relationships", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Lichens have long been considered as composite organisms composed of algae and/or cyanobacteria hosted by a fungus in a mutualistic relationship. Other organisms have been gradually discovered within the lichen thalli, such as multiple algal species, yeasts, or even viruses. Of pivotal relevance is the existence of the lichen microbiome, which is a community of microorganisms that can be found living together on the lichen surface. This community performs a growing number of functions. In this entry, we explore the journey of lichens being considered from a dual partnership to a multi-species symbiotic relationship.</p></article>", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "mycobiont", "Science", "partnership", "Q", "microbiome", "photobiont", "symbiosis", "holobiont"]}, "links": [{"href": "https://doi.org/10.3390/encyclopedia2030096"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Encyclopedia", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/encyclopedia2030096", "name": "item", "description": "10.3390/encyclopedia2030096", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/encyclopedia2030096"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-08-03T00:00:00Z"}}, {"id": "10.3390/v12060675", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:21:01Z", "type": "Journal Article", "created": "2020-06-23", "title": "Arbuscular Mycorrhizal Symbiosis Primes Tolerance to Cucumber Mosaic Virus in Tomato", "description": "<p>Tomato plants can establish symbiotic interactions with arbuscular mycorrhizal fungi (AMF) able to promote plant nutrition and prime systemic plant defenses against pathogens attack; the mechanism involved is known as mycorrhiza-induced resistance (MIR). However, studies on the effect of AMF on viral infection, still limited and not conclusive, indicate that AMF colonization may have a detrimental effect on plant defenses against viruses, so that the term \uffe2\uff80\uff9cmycorrhiza-induced susceptibility\uffe2\uff80\uff9d (MIS) has been proposed for these cases. To expand the case studies to a not yet tested viral family, that is, Bromoviridae, we investigated the effect of the colonization by the AMF Funneliformis mosseae on cucumber mosaic virus (CMV) infection in tomato by phenotypic, physiological, biochemical, and transcriptional analyses. Our results showed that the establishment of a functional AM symbiosis is able to limit symptoms development. Physiological and transcriptomic data highlighted that AMF mitigates the drastic downregulation of photosynthesis-related genes and the reduction of photosynthetic CO2 assimilation rate caused by CMV infection. In parallel, an increase of salicylic acid level and a modulation of reactive oxygen species (ROS)-related genes, toward a limitation of ROS accumulation, was specifically observed in CMV-infected mycorrhizal plants. Overall, our data indicate that the AM symbiosis influences the development of CMV infection in tomato plants and exerts a priming effect able to enhance tolerance to viral infection.</p>", "keywords": ["0301 basic medicine", "plant\u2013virus interaction", "arbuscular mycorrhizal symbiosis", "Microbiology", "Cucumovirus", "Plant Roots", "Article", "03 medical and health sciences", "Solanum lycopersicum", "Gene Expression Regulation", " Plant", "Mycorrhizae", "arbuscular mycorrhizal symbiosis", " cucumber mosaic virus", " Funneliformis mosseae", " gene expression", " priming tolerance", " plant-virus interaction", " RNA sequencing", " Solanum lycopersicum L.", "Photosynthesis", "Symbiosis", "<i>Funneliformis mosseae</i>", "Plant Diseases", "2. Zero hunger", "0303 health sciences", "cucumber mosaic virus", "Fungi", "RNA sequencing", "Carbon Dioxide", "QR1-502", "3. Good health", "<i>Solanum lycopersicum</i> L.", "gene expression", "arbuscular mycorrhizal symbiosis; cucumber mosaic virus; Funneliformis mosseae; gene expression; priming tolerance; plant-virus interaction; RNA sequencing; Solanum lycopersicum L.", "priming tolerance", "Arbuscular mycorrhizal symbiosis; Cucumber mosaic virus; Funneliformis mosseae; Gene expression; Plant-virus interaction; Priming tolerance; RNA sequencing; Solanum lycopersicum L", "Reactive Oxygen Species"]}, "links": [{"href": "http://www.mdpi.com/1999-4915/12/6/675/pdf"}, {"href": "https://iris.cnr.it/bitstream/20.500.14243/410166/1/prod_424799-doc_151509.pdf"}, {"href": "https://iris.unito.it/bitstream/2318/1765477/1/Miozzi%20et%20al%20Viruses%202020.pdf"}, {"href": "https://www.mdpi.com/1999-4915/12/6/675/pdf"}, {"href": "https://doi.org/10.3390/v12060675"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Viruses", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3390/v12060675", "name": "item", "description": "10.3390/v12060675", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3390/v12060675"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2020-06-22T00:00:00Z"}}, {"id": "10.5061/dryad.3nf8b", "type": "Feature", "geometry": null, "properties": {"license": "unspecified", "updated": "2026-07-26T16:21:20Z", "type": "Dataset", "title": "Data from: Exploiting mycorrhizas in broad daylight: partial mycoheterotrophy is a common nutritional strategy in meadow orchids.", "description": "unspecifiedStable isotope and  nitrogen concentration dataSingle and mean \u03b415N,  \u03b413C, \u03b42H, \u03b418O values, enrichment factors \u03b515N, \u03b513C, \u03b52H, \u03b518O and total  nitrogen concentration data of 17 Orchidaceae species and 34 autotrophic  reference species.JEcol-2017-0083_data.xlsx", "keywords": ["Neottia cordata", "Neotinea ustulata", "plant-soil (below-ground) interactions", "Traunsteinera globosa", "Liparis loeselii", "orchid mycorrhiza", "Herminium monorchis", "Cephalanthera rubra", "Neottia nidus-avis", "15. Life on land", "Dactylorhiza majalis", "Carbon", "Gymnadenia nigra", "Rhizoctonia", "Platanthera bifolia", "Gymnadenia conopsea", "Malaxis monophyllos", "Dactylorhiza viridis", "Spiranthes aestivalis", "Dactylorhiza incarnata", "Pseudorchis albida", "Epipactis helleborine", "Orchidaceae", "Symbiosis", "Hydrogen"], "contacts": [{"organization": "Schiebold, Julienne M.I., Bidartondo, Martin I., Lenhard, Florian, Makiola, Andreas, Gebauer, Gerhard, Schiebold, Julienne M.-I.,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.3nf8b"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.3nf8b", "name": "item", "description": "10.5061/dryad.3nf8b", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.3nf8b"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-06-21T00:00:00Z"}}, {"id": "2931642511", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-26T16:25:53Z", "type": "Journal Article", "created": "2019-04-04", "title": "When the exception becomes the rule: An integrative approach to symbiosis", "description": "Symbiosis, mainly due to the advances in -omics technology and to the microbiome revolution, is being increasingly acknowledged as fundamental to explain any aspect of life existence. Previously considered an exception, a peculiar characteristic of few systems like lichens, corals and mycorrhizas, symbiosis is nowadays recognized as the rule, with the microbiome being part of all living entities and systems. However, our knowledge of the ecological meaning and functioning of many symbiotic systems is still limited. Here, we discuss a new, integrative approach based on current findings that looks at commonalities among symbiotic systems to produce theoretical models and conceptual knowledge that would allow a more efficient exploitation of symbiosis-based biotechnologies. The microbiome recruitment and assemblage processes are indicated as one of the potential targets where a holistic approach could bring advantages. Finally, we reflect on the potential socio-economic and environmental consequences of a symbiotic view of the world, where co-dependence is the matrix of life.", "keywords": ["0301 basic medicine", "0303 health sciences", "03 medical and health sciences", "Microbiota", "Animals", "Anthozoa", "Symbiosis"]}, "links": [{"href": "https://doi.org/2931642511"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Science%20of%20The%20Total%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2931642511", "name": "item", "description": "2931642511", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2931642511"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-07-01T00:00:00Z"}}, {"id": "10400.5/24932", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:24:44Z", "type": "Journal Article", "created": "2022-06-10", "title": "Diversity and Agronomic Performance of Lupinus mutabilis Germplasm in European and Andean Environments", "description": "<p>The introduction of Lupinus mutabilis (Andean lupin) in Europe will provide a new source of protein and oil for plant-based diets and biomass for bio-based products, while contributing to the improvement of marginal soils. This study evaluates for the first time the phenotypic variability of a large panel of L. mutabilis accessions both in their native environment and over two cropping conditions in Europe (winter crop in the Mediterranean region and summer crop in North-Central Europe), paving the way for the selection of accessions adapted to specific environments. The panel of 225 accessions included both germplasm pools from the Andean region and breeding lines from Europe. Notably, we reported higher grain yield in Mediterranean winter-cropping conditions (18 g/plant) than in the native region (9 g/plant). Instead, North European summer-cropping conditions appear more suitable for biomass production (up to 2 kg/plant). The phenotypic evaluation of 16 agronomical traits revealed significant variation in the panel. Principal component analyses pointed out flowering time, yield, and architecture-related traits as the main factors explaining variation between accessions. The Peruvian material stands out among the top-yielding accessions in Europe, characterized by early lines with high grain yield (e.g., LIB065, LIB072, and LIB155). Bolivian and Ecuadorian materials appear more valuable for the selection of genotypes for Andean conditions and for biomass production in Europe. We also observed that flowering time in the different environments is influenced by temperature accumulation. Within the panel, it is possible to identify both early and late genotypes, characterized by different thermal thresholds (600\uffc2\uffb0C\uffe2\uff80\uff93700\uffc2\uffb0C and 1,000\uffe2\uff80\uff931,200\uffc2\uffb0C GDD, respectively). Indications on top-yielding and early/late accessions, heritability of morpho-physiological traits, and their associations with grain yield are reported and remain largely environmental specific, underlining the importance of selecting useful genetic resources for specific environments. Altogether, these results suggest that the studied panel holds the genetic potential for the adaptation of L. mutabilis to Europe and provide the basis for initiating a breeding program based on exploiting the variation described herein.</p", "keywords": ["Biomass (ecology)", "0301 basic medicine", "Lupin Seeds", "Cropping", "germplasm characterization", "Plant Science", "Crop", "Plant breeding", "SB1-1110", "Evolution and Nutritional Properties of Lupin Seeds", "Agricultural and Biological Sciences", "03 medical and health sciences", "Germplasm", "Biology", "Ecology", " Evolution", " Behavior and Systematics", "2. Zero hunger", "0303 health sciences", "biomass", "Ecology", "grain yield", "Plant culture", "Life Sciences", "Genomics and Breeding of Legume Crops", "Agriculture", "15. Life on land", "Agronomy", "Lupinus", "vegetative development", "Evolution and Ecology of Endophyte-Grass Symbiosis", "Andean lupin", "breeding", "FOS: Biological sciences", "Mediterranean Basin", "Mediterranean climate", "phenotypic diversity"]}, "links": [{"href": "https://repositorio.ulisboa.pt/bitstream/10400.5/24932/1/DRAT-fpls-13-903661.pdf"}, {"href": "https://doi.org/10400.5/24932"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10400.5/24932", "name": "item", "description": "10400.5/24932", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10400.5/24932"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-06-10T00:00:00Z"}}, {"id": "10182/16842", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:24:33Z", "type": "Journal Article", "created": "2023-05-18", "title": "A glycan receptor kinase facilitates intracellular accommodation of arbuscular mycorrhiza and symbiotic rhizobia in the legume Lotus japonicus", "description": "<p>Receptors that distinguish the multitude of microbes surrounding plants in the environment enable dynamic responses to the biotic and abiotic conditions encountered. In this study, we identify and characterise a glycan receptor kinase, EPR3a, closely related to the exopolysaccharide receptor EPR3. Epr3a is up-regulated in roots colonised by arbuscular mycorrhizal (AM) fungi and is able to bind glucans with a branching pattern characteristic of surface-exposed fungal glucans. Expression studies with cellular resolution show localised activation of the Epr3a promoter in cortical root cells containing arbuscules. Fungal infection and intracellular arbuscule formation are reduced in epr3a mutants. In vitro, the EPR3a ectodomain binds cell wall glucans in affinity gel electrophoresis assays. In microscale thermophoresis (MST) assays, rhizobial exopolysaccharide binding is detected with affinities comparable to those observed for EPR3, and both EPR3a and EPR3 bind a well-defined \uffce\uffb2-1,3/\uffce\uffb2-1,6 decasaccharide derived from exopolysaccharides of endophytic and pathogenic fungi. Both EPR3a and EPR3 function in the intracellular accommodation of microbes. However, contrasting expression patterns and divergent ligand affinities result in distinct functions in AM colonisation and rhizobial infection in Lotus japonicus. The presence of Epr3a and Epr3 genes in both eudicot and monocot plant genomes suggest a conserved function of these receptor kinases in glycan perception.</p", "keywords": ["570", "QH301-705.5", "ANZSRC::30 Agricultural", "MESORHIZOBIUM-LOTI", "Plant Roots", "veterinary and food sciences", "ROOT", "Polysaccharides", "Gene Expression Regulation", " Plant", "Mycorrhizae", "CELL", "Biology (General)", "Symbiosis", "Glucans", "Plant Proteins", "FUNGAL", "PERCEPTION", "ANZSRC::31 Biological sciences", "LAMINARIN", "Phosphotransferases", "500", "TRANSFORMATION", "EVOLUTION", "ANZSRC::32 Biomedical and clinical sciences", "DEFENSE RESPONSES", "Mutation", "Lotus", "EXOPOLYSACCHARIDE", "Root Nodules", " Plant", "Research Article", "Rhizobium"]}, "links": [{"href": "https://doi.org/10182/16842"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/PLOS%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10182/16842", "name": "item", "description": "10182/16842", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10182/16842"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-05-18T00:00:00Z"}}, {"id": "10.60692/aqpen-xja81", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-26T16:24:12Z", "type": "Journal Article", "created": "2022-12-22", "title": "Litter chemistry of common European tree species drives the feeding preference and consumption rate of soil invertebrates, and shapes the diversity and structure of gut and faecal microbiomes", "description": "Open AccessTerrestrial isopods and millipedes are key drivers of a litter decomposition in terrestrial ecosystems but the effects of litter chemistry on feeding preference and litter consumption rate as well as on the diversity and composition of gut and faecal microbiome still entails several challenges. We established a mesocosm experiment with terrestrial isopods (Oniscus asellus) and millipedes (Glomeris marginata) fed by leaf litter from six common European tree species (ash, maple, lime, beech, oak and Norway spruce) to reveal the effect of litter chemistry on consumption rate and feeding preference as well as on the compositions of gut and faecal microbiomes. The total percentage of consumed litter showed that O. asellus preferred nutrient-rich and labile-C litter of ash over more recalcitrant litter of oak, beech, and Norway spruce, while G. marginata preferred calcium-rich ash, maple and lime litter over beech and Norway spruce. Consumption of litter by O. asellus and G. marginata increased with concentrations of magnesium, sulphur and potassium but decreased with concentrations of iron, phosphorus, lignin, cellulose and TOC. The millipede G. marginata harboured higher bacterial OTU richness (73.5 \u00b1 12.5) than the isopod O. asellus (49.1 \u00b1 15.9), but fungal OTU richness was similar with 25.8 \u00b1 6.7 in O. asellus and 25.7 \u00b1 2.7 in G. marginata. In total, faeces of both animals hosted higher diversity than gut. In gut and faeces of O. asellus, the fungal OTU richness was highest for individuals fed by litter of Norway spruce, while lowest OTU richness was recorded for individuals fed by litter of more palatable ash. In contrast, the highest diversity of the fungal community in gut and faeces of G. marginata was recorded for individuals fed by palatable lime litter, while the lowest OTUs richness was recorded when millipedes were fed by maple and spruce. The structures of bacterial and fungal communities generally separated between O. asellus and G. marginata. The fungal community structure in gut and faeces differed between animals fed by different foliar litters, while the bacterial community structure mainly differed between gut and faeces regardless of the offered type of litter. The fungal community structure in gut and faeces of O. asellus and G. marginata were shaped by concentrations of magnesium, sulphur, lignin and cellulose. The bacterial communities in gut and faeces of both O. asellus and G. marginata were dominated by copiotrophic bacteria, while fungal communities were dominated by unspecified saprotrophs. Our study suggest that litter quality is a strong driver of feeding preference and consumption rates as well as composition of bacterial and fungal communities in gut and faeces of two species representing the main groups of litter feeding soil fauna in European forests.", "keywords": ["0301 basic medicine", "Genomic Insights into Social Insects and Symbiosis", "Plant Science", "Plant litter", "Agricultural and Biological Sciences", "03 medical and health sciences", "Biochemistry", " Genetics and Molecular Biology", "Litter", "Genetics", "Ecological Niche", "Biology", "Ecosystem", "Beech", "0303 health sciences", "Species Distribution Modeling and Climate Change Impacts", "Ecology", "Ecological Modeling", "Botany", "Life Sciences", "15. Life on land", "Plant-Parasitic Nematodes in Molecular Plant Pathology", "Detritus", "FOS: Biological sciences", "Detritivore", "Environmental Science", "Physical Sciences", "Species richness"]}, "links": [{"href": "https://doi.org/10.60692/aqpen-xja81"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Biology%20and%20Biochemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.60692/aqpen-xja81", "name": "item", "description": "10.60692/aqpen-xja81", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.60692/aqpen-xja81"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-02-01T00:00:00Z"}}, {"id": "10067/1804720151162165141", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:24:31Z", "type": "Journal Article", "created": "2021-07-21", "title": "Shifts in the Abundances of Saprotrophic and Ectomycorrhizal Fungi With Altered Leaf Litter Inputs", "description": "<p>Ectomycorrhizal (EcM) and saprotrophic fungi interact in the breakdown of organic matter, but the mechanisms underlying the EcM role on organic matter decomposition are not totally clear. We hypothesized that the ecological relations between EcM and saprotroph fungi are modulated by resources availability and accessibility, determining decomposition rates. We manipulated the amount of leaf litter inputs (No-Litter, Control Litter, Doubled Litter) on Trenched (root exclusion) and Non-Trenched plots (with roots) in a temperate deciduous forest of EcM-associated trees. Resultant shifts in soil fungal communities were determined by phospholipid fatty acids and DNA sequencing after 3 years, and CO2 fluxes were measured throughout this period. Different levels of leaf litter inputs generated a gradient of organic substrate availability and accessibility, altering the composition and ecological relations between EcM and saprotroph fungal communities. EcM fungi dominated at low levels of fresh organic substrates and lower organic matter quality, where short-distances exploration types seem to be better competitors, whereas saprotrophs and longer exploration types of EcM fungi tended to dominate at high levels of leaf litter inputs, where labile organic substrates were easily accessible. We were, however, not able to detect unequivocal signs of competition between these fungal groups for common resources. These results point to the relevance of substrate quality and availability as key factors determining the role of EcM and saprotroph fungi on litter and soil organic matter decay and represent a path forward on the capacity of organic matter decomposition of different exploration types of EcM fungi.</p", "keywords": ["liti\u00e8re v\u00e9g\u00e9tale", "Plant detritus", "0301 basic medicine", "570", "Quercus petraea", "http://aims.fao.org/aos/agrovoc/c_24064", "Champignon", "http://aims.fao.org/aos/agrovoc/c_14083", "litter decomposition", "Plant Science", "630", "SB1-1110", "03 medical and health sciences", "Saprophyte", "http://aims.fao.org/aos/agrovoc/c_33550", "environment/Symbiosis", "[SDV.EE.ECO] Life Sciences [q-bio]/Ecology", " environment/Ecosystems", "plant detritus", "106026 Ecosystem research", "http://aims.fao.org/aos/agrovoc/c_3047", "Biology", "http://aims.fao.org/aos/agrovoc/c_3145", "http://aims.fao.org/aos/agrovoc/c_5023", "http://aims.fao.org/aos/agrovoc/c_35657", "http://aims.fao.org/aos/agrovoc/c_5387", "soil fungal communities", "Mycorhiz\u00e9", "0303 health sciences", "liti\u00e8re foresti\u00e8re", "Ectomycorrhiza fungal exploration types", "ectomycorrhiza fungal exploration types", "http://aims.fao.org/aos/agrovoc/c_24692", "Litter decomposition", "Plant culture", "Soil fungal communities", "[SDV.EE.IEO] Life Sciences [q-bio]/Ecology", " environment/Symbiosis", "15. Life on land", "Gadgil effect", "http://aims.fao.org/aos/agrovoc/c_35482", "CO2 fluxes", "ectomycorhize", "106026 \u00d6kosystemforschung", "mati\u00e8re organique", "CO fluxes", "[SDV.EE.ECO]Life Sciences [q-bio]/Ecology", "[SDV.EE.IEO]Life Sciences [q-bio]/Ecology", "champignon du sol", "environment/Ecosystems", "mati\u00e8re organique du sol"]}, "links": [{"href": "https://doi.org/10067/1804720151162165141"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10067/1804720151162165141", "name": "item", "description": "10067/1804720151162165141", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10067/1804720151162165141"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-07-21T00:00:00Z"}}, {"id": "10067/1920350151162165141", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-26T16:24:31Z", "type": "Journal Article", "created": "2022-10-31", "title": "Tree species traits and mycorrhizal association shape soil microbial communities via litter quality and species mediated soil properties", "description": "Open AccessLes sols abritent une grande diversit\u00e9 de microbiote du sol, qui jouent un r\u00f4le crucial dans les processus \u00e9cosyst\u00e9miques cl\u00e9s tels que la transformation de la liti\u00e8re et la min\u00e9ralisation, mais la fa\u00e7on dont les interactions complexes plante-sol fa\u00e7onnent la diversit\u00e9 et la composition du microbiote du sol reste insaisissable. Nous avons effectu\u00e9 le s\u00e9quen\u00e7age de l'amplicon de l'ADN isol\u00e9 \u00e0 partir de la couche arable min\u00e9rale de six arbres europ\u00e9ens communs plant\u00e9s dans des peuplements de monoculture de jardins communs multi-sites d'\u00e9rables \u00e0 feuilles larges et de fr\u00eanes associ\u00e9s \u00e0 des mycorhizes arbusculaires (MA), de h\u00eatres \u00e0 feuilles larges, de chaux et de ch\u00eanes associ\u00e9s \u00e0 des champignons ectomycorhiziens (MCE) et d'\u00e9pinettes de conif\u00e8res associ\u00e9es \u00e0 la MCE. L'objectif principal de cette \u00e9tude \u00e9tait d'\u00e9valuer les effets de l'identit\u00e9 des esp\u00e8ces d'arbres, des traits et des associations mycorhiziennes sur la diversit\u00e9, la structure de la communaut\u00e9, la coh\u00e9sion et le changement dans l'abondance relative des groupes taxonomiques et fonctionnels de bact\u00e9ries, de champignons et de n\u00e9matodes du sol. Nos r\u00e9sultats ont r\u00e9v\u00e9l\u00e9 que les sols sous les feuillus abritaient une plus grande richesse en bact\u00e9ries, champignons et n\u00e9matodes que sous l'\u00e9pinette de Norv\u00e8ge. Les esp\u00e8ces d'arbres \u00e0 feuilles larges associ\u00e9es aux champignons de la MA ont montr\u00e9 une plus grande coh\u00e9sion des communaut\u00e9s bact\u00e9riennes et fongiques que les arbres \u00e0 feuilles larges associ\u00e9s aux champignons de la mec, mais la coh\u00e9sion des communaut\u00e9s de n\u00e9matodes \u00e9tait plus \u00e9lev\u00e9e sous les arbres associ\u00e9s aux champignons de la mec que sous les arbres associ\u00e9s aux champignons de la MA. Les bact\u00e9ries copiotrophes, les saprotrophes fongiques et les n\u00e9matodes bact\u00e9rivores \u00e9taient associ\u00e9s au fr\u00eane, \u00e0 l'\u00e9rable et \u00e0 la chaux ayant un pH du sol \u00e9lev\u00e9 et des indices de d\u00e9composition de la liti\u00e8re \u00e9lev\u00e9s, tandis que les bact\u00e9ries oligotrophes, les champignons ectomycorhiziens et les n\u00e9matodes fongivores \u00e9taient associ\u00e9s au h\u00eatre, au ch\u00eane et \u00e0 l'\u00e9pinette de Norv\u00e8ge qui avaient un pH du sol faible et des indices de d\u00e9composition de la liti\u00e8re faibles. Les esp\u00e8ces d'arbres associ\u00e9es aux champignons AM pr\u00e9sentaient une forte proportion de bact\u00e9ries copiotrophes et de champignons saprotrophes, tandis que les arbres associ\u00e9s aux champignons ECM pr\u00e9sentaient une abondance relative \u00e9lev\u00e9e de bact\u00e9ries oligotrophes, de champignons ECM et de n\u00e9matodes fongivores. Les diff\u00e9rentes abondances de ces groupes fonctionnels soutiennent l'\u00e9conomie nutritive plus inorganique des esp\u00e8ces d'arbres AM par rapport \u00e0 l'\u00e9conomie nutritive plus organique des esp\u00e8ces d'arbres ECM. La communaut\u00e9 bact\u00e9rienne a \u00e9t\u00e9 indirectement affect\u00e9e par la qualit\u00e9 de la liti\u00e8re via les propri\u00e9t\u00e9s du sol, tandis que la communaut\u00e9 fongique a \u00e9t\u00e9 directement affect\u00e9e par la qualit\u00e9 de la liti\u00e8re et les esp\u00e8ces d'arbres. Les groupes fonctionnels des n\u00e9matodes refl\u00e9taient les communaut\u00e9s de bact\u00e9ries et de champignons, indiquant ainsi les groupes principaux et actifs des communaut\u00e9s microbiennes sp\u00e9cifiques aux esp\u00e8ces d'arbres. Notre \u00e9tude a sugg\u00e9r\u00e9 que l'identit\u00e9, les traits et l'association mycorhizienne des esp\u00e8ces d'arbres fa\u00e7onnent consid\u00e9rablement les communaut\u00e9s microbiennes via un effet direct de la chimie de la liti\u00e8re ainsi que via les propri\u00e9t\u00e9s du sol m\u00e9di\u00e9es par la liti\u00e8re.", "keywords": ["Fagus sylvatica", "Soil Science", "Plant Science", "Plant litter", "Agricultural and Biological Sciences", "Soil biology", "Mycorrhizal Fungi and Plant Interactions", "Soil water", "Genetics", "Saproxylic Insect Ecology and Forest Management", "Soil microbiota", "Symbiosis", "Plant Interactions", "Biology", "Ecosystem", "Amplicon sequencing", "Beech", "Ecology", "Bacteria", "Common garden experiment", "Botany", "Life Sciences", "04 agricultural and veterinary sciences", "15. Life on land", "Ectomycorrhiza", "Insect Science", "FOS: Biological sciences", "Functional groups", "Community cohesion", "0401 agriculture", " forestry", " and fisheries", "Trophic interactions", "Soil Carbon Dynamics and Nutrient Cycling in Ecosystems", "Mycorrhiza"]}, "links": [{"href": "https://doi.org/10067/1920350151162165141"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Forest%20Ecology%20and%20Management", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10067/1920350151162165141", "name": "item", "description": "10067/1920350151162165141", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10067/1920350151162165141"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-01T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=symbiosis&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=symbiosis&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=symbiosis&", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=symbiosis&offset=50", "hreflang": "en-US"}], "numberMatched": 75, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-07-26T20:10:13.690416Z"}