{"type": "FeatureCollection", "features": [{"id": "1887/73460", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-28T16:24:18Z", "type": "Journal Article", "created": "2018-01-31", "title": "Optimization of the metabolic stability of a fluorinated cannabinoid receptor subtype 2 (CB2) ligand designed for PET studies", "description": "The central CB2 receptor represents a promising target for the treatment of neuroinflammatory diseases as CB2 activation mediates anti-inflammatory effects. Recently, the F-18 labeled PET radiotracer [18F]7a was reported, which shows high CB2 affinity and high selectivity over the CB1 subtype but low metabolic stability due to hydrolysis of the amide group. Based on these findings twelve bioisosteres of 7a were synthesized containing a non-hydrolysable functional group instead of the amide group. The secondary amine 23a (Ki\u202f=\u202f7.9\u202fnM) and the ketone 26a (Ki\u202f=\u202f8.6\u202fnM) displayed high CB2 affinity and CB2:CB1 selectivity in in\u00a0vitro radioligand binding studies. Incubation of 7a, 23a and 26a with mouse liver microsomes and LC-quadrupole-MS analysis revealed a slightly higher metabolic stability of secondary amine 23a, but a remarkably higher stability of ketone 26a in comparison to amide 7a. Furthermore, a logD7.4 value of 5.56\u202f\u00b1\u202f0.08 was determined for ketone 26a by micro shake-flask method and LC-MS quantification.", "keywords": ["0301 basic medicine", "Amide bioisosteres", "Halogenation", "CB(2) receptor ligands", "Ligands", "Receptor", " Cannabinoid", " CB2", "Mice", "Structure-Activity Relationship", "03 medical and health sciences", "Animals", "Humans", "Identification of metabolites", "Amines", "2. Zero hunger", "0303 health sciences", "Dose-Response Relationship", " Drug", "Molecular Structure", "Fluorinated carbazole derivatives", "Ketones", "Amides", "3. Good health", "Metabolic stabilization", "PET", "Drug Design", "Positron-Emission Tomography", "Microsomes", " Liver", "Structure affinity relationships"]}, "links": [{"href": "https://doi.org/1887/73460"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/European%20Journal%20of%20Medicinal%20Chemistry", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "1887/73460", "name": "item", "description": "1887/73460", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/1887/73460"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-02-01T00:00:00Z"}}, {"id": "10.1016/j.jaap.2018.07.011", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-28T16:16:37Z", "type": "Journal Article", "created": "2018-07-20", "title": "Effects of pyrolysis temperature on the hydrologically relevant porosity of willow biochar", "description": "Open AccessBiochar pore space consists of porosity of multiple length scales. In direct water holding applications like water storage for plant water uptake, the main interest is in micrometre-range porosity since these pores are able to store water that is easily available for plants. Gas adsorption measurements which are commonly used to characterize the physical pore structure of biochars are not able to quantify this pore-size range. While pyrogenetic porosity (i.e. pores formed during pyrolysis process) tends to increase with elevated process temperature, it is uncertain whether this change affects the pore space capable to store plant available water. In this study, we characterized biochar porosity with x-ray tomography which provides quantitative information on the micrometer-range porosity. We imaged willow dried at 60 $^ circ$C and biochar samples pyrolysed in three different temperatures (peak temperatures 308, 384, 489 $^ circ$C, heating rate 2 $^ circ$C min$^{-1}$). Samples were carefully prepared and traced through the experiments, which allowed investigation of porosity development in micrometre size range. Pore space was quantified with image analysis of x-ray tomography images and, in addition, nanoscale porosity was examined with helium ion microscopy. The image analysis results show that initial pore structure of the raw material determines the properties of micrometre-range porosity in the studied temperature range. Thus, considering the pore-size regime relevant to the storage of plant available water, pyrolysis temperature in the studied range does not provide means to optimize the biochar structure. However, these findings do not rule out that process temperature may affect the water retention properties of biochars by modifying the chemical properties of the pore surfaces.", "keywords": ["Fysiikka", "porosity", "FOS: Physical sciences", "Applied Physics (physics.app-ph)", "kuivatislaus", "01 natural sciences", "huokoisuus", "image analysis", "biochar", "ta216", "ta218", "0105 earth and related environmental sciences", "x-ray tomography", "biohiili", "Condensed Matter - Materials Science", "ta114", "Physics", "ta1182", "Materials Science (cond-mat.mtrl-sci)", "Physics - Applied Physics", "04 agricultural and veterinary sciences", "slow pyrolysis", "6. Clean water", "kuvantaminen", "kuva-analyysi", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://doi.org/10.1016/j.jaap.2018.07.011"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Analytical%20and%20Applied%20Pyrolysis", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jaap.2018.07.011", "name": "item", "description": "10.1016/j.jaap.2018.07.011", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jaap.2018.07.011"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-09-01T00:00:00Z"}}, {"id": "10.1007/978-3-031-12176-0_11", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-28T16:14:40Z", "type": "Report", "created": "2022-11-28", "title": "Integrating X-ray CT Data into Models", "description": "Open AccessXP is a Mar\u00eda Zambrano Fellow at the Public University of Navarra (UPNA) and acknowledges funding from the European Union - NextGenerationEU through the Spanish program 'Ayuda para la Recualificaci\u00f3n del Sistema Universitario Espa\u00f1ol'. AE acknowledges funding from Swiss National Science Foundation: Grants P2EZP2 175128 and P400PB_186751. TR was funded by ERC Consolidator grant 646809 DIMR.", "keywords": ["2. Zero hunger", "570", "550", "X-Ray computed tomography", "[INFO.INFO-MO] Computer Science [cs]/Modeling and Simulation", "Soil properties", "[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study", "15. Life on land", "[SDV.SA.SDS] Life Sciences [q-bio]/Agricultural sciences/Soil study", "[INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation", "6. Clean water"], "contacts": [{"organization": "Portell, Xavier, Pot, Valerie, Ebrahimi, Ali, Monga, Olivier, Roose, Tiina,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1007/978-3-031-12176-0_11"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/978-3-031-12176-0_11", "name": "item", "description": "10.1007/978-3-031-12176-0_11", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/978-3-031-12176-0_11"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-01T00:00:00Z"}}, {"id": "10.1002/ldr.2726", "type": "Feature", "geometry": null, "properties": {"license": "Closed Access", "updated": "2026-07-28T16:14:36Z", "type": "Journal Article", "created": "2017-02-23", "title": "Conservation Agriculture Had A Poor Impact On The Soil Porosity Of Veneto Low-Lying Plain Silty Soils After A 5-Year Transition Period", "description": "Abstract<p>Conservation agriculture practices have been proposed as a set of techniques for improving soil structure properties and related ecosystem services. This study compared conservation agriculture (CA) practices (no\uffe2\uff80\uff90tillage, cover crop and residue retention) and conventional intensive tillage system in order to evaluate their effects on total porosity, pore size distribution, pore architecture and morphology. The experiment was set up in 2010 on four farms of the low\uffe2\uff80\uff90lying Veneto Region plain characterized by silty soils. Almost hundred soil samples were collected in 2015 at four depths down to 50\uffe2\uff80\uff90cm layer and investigated for porosity from micrometre (0\uffc2\uffb70074\uffc2\uffa0\uffce\uffbcm) to macrometre (2\uffc2\uffb75\uffc2\uffa0mm) by coupling mercury intrusion porosimetry and X\uffe2\uff80\uff90ray computed microtomography (\uffce\uffbcCT). Indices of soil morphology and architecture were derived by analysing 3D images and mercury intrusion porosimetry pore size curves. Results suggested that silty soils of Veneto plain are microstructured because much (82%) of the porosity ranged between 0\uffc2\uffb70074 and 30\uffc2\uffa0\uffce\uffbcm. CA practices positively influenced the ultramicroporosity class (0\uffc2\uffb71\uffe2\uff80\uff935\uffc2\uffa0\uffce\uffbcm) (1\uffc2\uffb786E\uffe2\uff80\uff9001 vs 1\uffc2\uffb767E\uffe2\uff80\uff9001\uffc2\uffa0\uffce\uffbcm3\uffc2\uffa0\uffce\uffbcm\uffe2\uff88\uff923) that is strictly linked to soil organic carbon stabilization while no effects were observed in X\uffe2\uff80\uff90ray \uffce\uffbcCT porosity domain (&gt; 26\uffc2\uffa0\uffce\uffbcm). Silty soils of Veneto plain showed a slow reaction to CA because of the poor aggregate stability and low soil organic carbon. However, the positive response of the ultramicropore fraction indicates that a virtuous cycle was initiated between soil organic carbon and porosity, hopefully leading to well\uffe2\uff80\uff90developed macropore systems and, in turn, enhanced soil functions and ecosystem services. Copyright \uffc2\uffa9 2017 John Wiley &amp; Sons, Ltd.</p>", "keywords": ["2. Zero hunger", "Conservation agriculture; Mercury intrusion porosimetry; Pore morphology and architecture; Pore size distribution; X-ray computed microtomography; Environmental Chemistry; Development3304 Education; 2300; Soil Science", "13. Climate action", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land"]}, "links": [{"href": "https://doi.org/10.1002/ldr.2726"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Land%20Degradation%20%26amp%3B%20Development", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1002/ldr.2726", "name": "item", "description": "10.1002/ldr.2726", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1002/ldr.2726"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-05-12T00:00:00Z"}}, {"id": "10.1007/s11242-015-0572-z", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:15:26Z", "type": "Journal Article", "created": "2015-09-14", "title": "Visualization and Characterization of Heterogeneous Water Flow in Double-Porosity Media by Means of X-ray Computed Tomography", "description": "Three-dimensional visualization of dynamic water transport process in soil by 1 computed tomography (CT) technique is still limited by its low temporal resolution. In order 2 to monitor dynamically water transport in soil, a compromise has to be found between water 3 flow velocity and CT acquisition time. Furthermore, an efficient image analysis method is 1 4 necessary. In this work, we followed the water transport in three dimensions by CT imaging 5 across a double-porosity media constituted of two distinct materials, i.e. sand and porous 6 clay spheres. The CT acquisition parameters were adjusted to the water pore velocity so that 7 we succeeded to register the water front displacement per time range of 25 min. We also used 8 the image subtraction method to extract water distribution evolution with time with a space 9 resolution of 6 \u00d7 10 \u22123 cm. Both time and space resolution are relatively high compared with 10 other dynamic studies. The water content profiles showed that the clay spheres remained 11 in their dry state during water infiltration, while the water transport only occurred in the 12 sand matrix. These results are consistent with macroscopic experiments. The water front 13 visualized by CT showed a non-symmetrical shape which was related to water transfer in 14 non-equilibrium as shown by column displacement experiments.", "keywords": ["2. Zero hunger", "550", "[SDE.IE]Environmental Sciences/Environmental Engineering", "0208 environmental biotechnology", "Porous media", "0207 environmental engineering", "02 engineering and technology", "[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study", "6. Clean water", "620", "Image analysis", "3D visualization", "[SDU.STU.HY] Sciences of the Universe [physics]/Earth Sciences/Hydrology", "[SDE.IE] Environmental Sciences/Environmental Engineering", "[SDU.STU.HY]Sciences of the Universe [physics]/Earth Sciences/Hydrology", "[SDV.SA.SDS] Life Sciences [q-bio]/Agricultural sciences/Soil study", "Computed tomography", "Water transport"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11242-015-0572-z"}, {"href": "https://doi.org/10.1007/s11242-015-0572-z"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Transport%20in%20Porous%20Media", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11242-015-0572-z", "name": "item", "description": "10.1007/s11242-015-0572-z", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11242-015-0572-z"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-09-14T00:00:00Z"}}, {"id": "10.1007/s11356-017-8823-x", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-28T16:15:29Z", "type": "Journal Article", "created": "2017-03-24", "title": "Quantitative characterization of pore structure of several biochars with 3D imaging", "description": "Open Access16 pages, 4 figures. The final publication is available at Springer via http://dx.doi.org/10.1007/s11356-017-8823-x", "keywords": ["x-ray tomography", "Condensed Matter - Materials Science", "soil amendment", "pore structure", "ta1171", "ta1182", "Water", "Materials Science (cond-mat.mtrl-sci)", "FOS: Physical sciences", "04 agricultural and veterinary sciences", "01 natural sciences", "6. Clean water", "Diffusion", "Imaging", " Three-Dimensional", "image analysis", "Charcoal", "Image Processing", " Computer-Assisted", "0401 agriculture", " forestry", " and fisheries", "biochar", "Porosity", "soil amendments", "ta218", "water retention", "0105 earth and related environmental sciences"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11356-017-8823-x.pdf"}, {"href": "https://doi.org/10.1007/s11356-017-8823-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20and%20Pollution%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11356-017-8823-x", "name": "item", "description": "10.1007/s11356-017-8823-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11356-017-8823-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-03-24T00:00:00Z"}}, {"id": "10.1007/s11538-017-0350-x", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:15:31Z", "type": "Journal Article", "created": "2017-10-13", "title": "An Explicit Structural Model of Root Hair and Soil Interactions Parameterised by Synchrotron X-ray Computed Tomography", "description": "The rhizosphere is a zone of fundamental importance for understanding the dynamics of nutrient acquisition by plant roots. The canonical difficulty of experimentally investigating the rhizosphere led long ago to the adoption of mathematical models, the most sophisticated of which now incorporate explicit representations of root hairs and rhizosphere soil. Mathematical upscaling regimes, such as homogenisation, offer the possibility of incorporating into larger-scale models the important mechanistic processes occurring at the rhizosphere scale. However, we lack concrete descriptions of all the features required to fully parameterise models at the rhizosphere scale. By combining synchrotron X-ray computed tomography (SRXCT) and a novel root growth assay, we derive a three-dimensional description of rhizosphere soil structure suitable for use in multi-scale modelling frameworks. We describe an approach to mitigate sub-optimal root hair detection via structural root hair growth modelling. The growth model is explicitly parameterised with SRXCT data and simulates three-dimensional root hair ideotypes in silico, which are suitable for both ideotypic analysis and parameterisation of 3D geometry in mathematical models. The study considers different hypothetical conditions governing root hair interactions with soil matrices, with their respective effects on hair morphology being compared between idealised and image-derived soil/root geometries. The studies in idealised geometries suggest that packing arrangement of soil affects hair tortuosity more than the particle diameter. Results in field-derived soil suggest that hair access to poorly mobile nutrients is particularly sensitive to the physical interaction between the growing hairs and the phase of the soil in which soil water is present (i.e. the hydrated textural phase). The general trends in fluid-coincident hair length with distance from the root, and their dependence on hair/soil interaction mechanisms, are conserved across Cartesian and cylindrical geometries.", "keywords": ["2. Zero hunger", "0301 basic medicine", "0303 health sciences", "Mathematical Concepts", "15. Life on land", "Models", " Biological", "Plant Roots", "Soil", "03 medical and health sciences", "Imaging", " Three-Dimensional", "Rhizosphere", "Original Article", "Computer Simulation", "Tomography", " X-Ray Computed", "Synchrotrons"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11538-017-0350-x.pdf"}, {"href": "https://doi.org/10.1007/s11538-017-0350-x"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bulletin%20of%20Mathematical%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1007/s11538-017-0350-x", "name": "item", "description": "10.1007/s11538-017-0350-x", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1007/s11538-017-0350-x"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-10-13T00:00:00Z"}}, {"id": "10.1016/j.biombioe.2018.10.004", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-28T16:15:59Z", "type": "Journal Article", "created": "2018-10-11", "title": "How and why does willow biochar increase a clay soil water retention capacity?", "description": "Abstract   Addition of biochar into a soil changes its water retention properties by modifying soil textural and structural properties. In addition, internal micrometer-scale porosity that is able to directly store readily plant available water affects soil water retention properties. This study shows how precise knowledge of the internal micrometer-scale pore size distribution of biochar can deepen the understanding of the biochar-water interactions in soils. The micrometer-scale porosity of willow biochar was quantitatively and qualitatively characterized using X-ray tomography, 3D image analysis and Helium ion microscopy. The effect of biochar application on clay soil water retention was studied by conventional water retention curve approach. The results indicate that the internal pores of biochar, with sizes of at 50 and 10\u202f\u03bcm (equivalent pore diameter), increased soil porosity and the amount of readily plant available water. After biochar addition, changes in soil porosity were detected at pore size regimes 5\u201310 and 25\u202f\u03bcm, i.e. biochar pore sizes multiplied by factor 0.5. The detected pore size distribution of biochar does not predict directly (1:1 compatibility) the changes observed in the soil moisture characteristics. It is likely that biochar chemistry and pore morphology affect biochar-water interactions via e.g. surface roughness and contact angle. In addition, biochar induced changes in soil structure and texture affected soil moisture characteristics. However, the approach presented is an attractive pathway to more generalized understanding on how and why biochar internal porosity affects soil moisture characteristics.", "keywords": ["570", "Fysiikka", "ta1171", "mikroskopia", "savi", "01 natural sciences", "630", "huokoisuus", "soil water retention", "tomografia", "219", "3D image analysis", "biochar", "3D-mallinnus", "ta216", "ta218", "219 Environmental biotechnology", "0105 earth and related environmental sciences", "x-ray tomography", "biohiili", "maaper\u00e4", "ta114", "Physics", "ta1182", "04 agricultural and veterinary sciences", "15. Life on land", "6. Clean water", "mikrorakenteet", "plant available water", "helium ion microscopy", "0401 agriculture", " forestry", " and fisheries", "vesipitoisuus", "X-ray tomography"]}, "links": [{"href": "https://doi.org/10.1016/j.biombioe.2018.10.004"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biomass%20and%20Bioenergy", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.biombioe.2018.10.004", "name": "item", "description": "10.1016/j.biombioe.2018.10.004", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.biombioe.2018.10.004"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-12-01T00:00:00Z"}}, {"id": "2767760821", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:24:48Z", "type": "Journal Article", "created": "2017-11-08", "title": "Measurement of micro-scale soil deformation around roots using four-dimensional synchrotron tomography and image correlation", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>This study applied time lapse (four-dimensional) synchrotron X-ray computed tomography to observe micro-scale interactions between plant roots and soil. Functionally contrasting maize root tips were repeatedly imaged during ingress into soil columns of varying water content and compaction. This yielded sequences of three-dimensional densiometric data, representing time-resolved geometric soil and root configurations at the micronmetre scale. These data were used as inputs for two full-field kinematic quantification methods, which enabled the analysis of three-dimensional soil deformation around elongating roots. Discrete object tracking was used to track rigid mineral grains, while continuum digital volume correlation was used to track grey-level patterns within local sub-volumes. These techniques both allowed full-field soil displacements to be quantified at an intra-rhizosphere spatial sampling scale of less than 300 \u00b5m. Significant differences in deformation mechanisms were identified around different phenotypes under different soil conditions. A uniquely strong contrast was observed between intact and de-capped roots grown in dry, compacted soil. This provides evidence that functional traits of the root cap significantly reduce the amount of soil disturbance per unit of root elongation, with this effect being particularly significant in drier soil.</p></article>", "keywords": ["0301 basic medicine", "2. Zero hunger", "Soil", "0303 health sciences", "03 medical and health sciences", "15. Life on land", "Tomography", " X-Ray Computed", "Plant Roots", "Zea mays", "Synchrotrons"]}, "links": [{"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rsif.2017.0560"}, {"href": "https://doi.org/2767760821"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20The%20Royal%20Society%20Interface", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2767760821", "name": "item", "description": "2767760821", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2767760821"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-11-01T00:00:00Z"}}, {"id": "10.1016/j.envpol.2019.05.106", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:16:16Z", "type": "Journal Article", "created": "2019-05-21", "title": "Bioturbation of Ag2S-NPs in soil columns by earthworms", "description": "Sewage sludge contains Ag2S-NPs causing NP exposure of soil fauna when sludge is applied as soil amendment. Earthworm bioturbation is an important process affecting many soil functions. Bioturbation may be affected by the presence of Ag2S-NPs, but the earthworm activity itself may also influence the displacement of these NPs that otherwise show little transport in the soil. The aim of this study was to determine effects of Ag2S-NPs on earthworm bioturbation and effect of this bioturbation on the vertical distribution of Ag2S-NPs. Columns (12\u202fcm) of a sandy loamy soil with and without Lumbricus rubellus were prepared with and without 10\u202fmg Ag kg-1, applied as Ag2S-NPs in the top 2\u202fcm of the soil, while artificial rainwater was applied at \u223c1.2\u202fmm day-1. The soil columns were sampled at three depths weekly for 28 days and leachate collected from the bottom. Total Ag measurements showed more displacement of Ag to deeper soil layers in the columns with earthworms. The application of rain only did not significantly affect Ag transport in the soil. No Ag was detected in column leachates. X-ray tomography showed that changes in macro porosity and pore size distribution as a result of bioturbation were not different between columns with and without Ag2S-NPs. Earthworm activity was therefore not affected by Ag2S-NPs at the used exposure concentration. Ag concentrations along the columns and the earthworm density allowed the calculation of the bioturbation rate. The effect on the Ag transport in the soil shows that earthworm burrowing activity is a relevant process that must be taken into account when studying the fate of nanoparticles in soils.", "keywords": ["Silver", "Sewage", "Tomography", " X-Ray", "Transport", "Metal Nanoparticles", "earthworms", "15. Life on land", "01 natural sciences", "6. Clean water", "soil", "Soil", "13. Climate action", "bioturbation", "transport", "Earthworms", "Nanoparticles", "Animals", "Soil Pollutants", "nanoparticles", "Bioturbation", "Oligochaeta", "SDG 6 - Clean Water and Sanitation", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://doi.org/10.1016/j.envpol.2019.05.106"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Pollution", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.envpol.2019.05.106", "name": "item", "description": "10.1016/j.envpol.2019.05.106", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.envpol.2019.05.106"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-09-01T00:00:00Z"}}, {"id": "10.1016/j.geoderma.2015.04.019", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:16:33Z", "type": "Journal Article", "created": "2015-04-27", "title": "Application of smoothed particle hydrodynamics (SPH) and pore morphologic model to predict saturated water conductivity from X-ray CT imaging in a silty loam Cambisol", "description": "20 This study aims to estimate saturated hydraulic conductivity in a silty loam soil and compare modelled data with 21 experimental ones. The flow characteristics of twelve undisturbed soil cores (5 cm in diameter \u00d7 6 cm high) were 22 measured in the laboratory after performing X-ray computed microtomography (microCT) analysis. MicroCT 3D 23 imaging was integrated with an existing pore morphologic model and a numerical simulation based on mesh-24 free smoothed particle hydrodynamics (SPH) to calculate the water flow through the macropore network 25 (pores N 40 \u03bcm). Results showed that the proposed SPH method was able to predict hydraulic conductivity of 26 large-sized samples as falling in the range of the experimental ones. By contrast the morphologic model generally 27 underestimated the water flow and was slightly affected by the pore shape. Increasing microCT imaging resolu-28 tion and expanding the variability with other soil types will improve the understanding of the role of micropore 29 size and morphology on water conductivity. 30", "keywords": ["2. Zero hunger", "550", "[ SDV.SA.SDS ] Life Sciences [q-bio]/Agricultural sciences/Soil study", "0207 environmental engineering", "600", "04 agricultural and veterinary sciences", "02 engineering and technology", "Pore size distribution", "[ SDE.IE ] Environmental Sciences/Environmental Engineering", "Saturated hydraulic conductivity", "Soil structure", "0401 agriculture", " forestry", " and fisheries", "[ SDU.STU.HY ] Sciences of the Universe [physics]/Earth Sciences/Hydrology", "X-ray computed microtomography"]}, "links": [{"href": "https://doi.org/10.1016/j.geoderma.2015.04.019"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geoderma", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.geoderma.2015.04.019", "name": "item", "description": "10.1016/j.geoderma.2015.04.019", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.geoderma.2015.04.019"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-10-01T00:00:00Z"}}, {"id": "10.1016/j.geoderma.2025.117299", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:16:34Z", "type": "Journal Article", "created": "2025-04-19", "title": "Synchrotron-based 3D X-ray computed tomography reveals root system architecture: Plastic responses to phosphorus placement", "description": "We used synchrotron-based X-ray computed tomography (SRXCT) to visualize root distribution in soil cores. X-ray CT is emerging as a leading technique to study plant roots, but SRXCT offers potential advantages compared with conventional X-ray sources, including producing X-rays of higher intensity that are collimated, monochromatic and tuneable; delivering high-resolution data whilst avoiding issues such as beam-hardening and source divergence. We demonstrate the suitability of SRXCT for observing the root system of wheat plants growing in two soils (Calcisol and Ultisol) in response to placement of different phosphorus fertilisers. To optimize scanning quality, we tested the use of an inverse \u2018mask\u2019 in front of the soil cores to achieve a more uniform attenuation along the sample, thereby avoiding saturation of the detector along the thinnest parts of the soil cores. Secondly, we developed a deep learning approach for segmentation and quantification of root length and diameter. Our results demonstrate the use of SRXCT as a tool for studying root system architecture in soil at high spatial resolution. The SRXCT method marks a new stride towards advancing our understanding of root structures in unprecedented detail, opening further avenues for exploring plant-soil interactions.", "keywords": ["X-ray computed tomography", "Image segmentation", "Plant roots", "Root system architecture", "Soil phosphorus", "Science", "Q", "Root distribution", "Synchrotron"]}, "links": [{"href": "https://doi.org/10.1016/j.geoderma.2025.117299"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geoderma", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.geoderma.2025.117299", "name": "item", "description": "10.1016/j.geoderma.2025.117299", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.geoderma.2025.117299"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2025-05-01T00:00:00Z"}}, {"id": "10.1016/j.jbiomech.2016.04.023", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:16:38Z", "type": "Journal Article", "created": "2016-04-30", "title": "Mapping soil deformation around plant roots using in vivo 4D X-ray Computed Tomography and Digital Volume Correlation", "description": "The mechanical impedance of soils inhibits the growth of plant roots, often being the most significant physical limitation to root system development. Non-invasive imaging techniques have recently been used to investigate the development of root system architecture over time, but the relationship with soil deformation is usually neglected. Correlative mapping approaches parameterised using 2D and 3D image data have recently gained prominence for quantifying physical deformation in composite materials including fibre-reinforced polymers and trabecular bone. Digital Image Correlation (DIC) and Digital Volume Correlation (DVC) are computational techniques which use the inherent material texture of surfaces and volumes, captured using imaging techniques, to map full-field deformation components in samples during physical loading. Here we develop an experimental assay and methodology for four-dimensional, in vivo X-ray Computed Tomography (XCT) and apply a Digital Volume Correlation (DVC) approach to the data to quantify deformation. The method is validated for a field-derived soil under conditions of uniaxial compression, and a calibration study is used to quantify thresholds of displacement and strain measurement. The validated and calibrated approach is then demonstrated for an in vivo test case in which an extending maize root in field-derived soil was imaged hourly using XCT over a growth period of 19h. This allowed full-field soil deformation data and 3D root tip dynamics to be quantified in parallel for the first time. This fusion of methods paves the way for comparative studies of contrasting soils and plant genotypes, improving our understanding of the fundamental mechanical processes which influence root system development.", "keywords": ["0301 basic medicine", "Soil", "03 medical and health sciences", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "Four-Dimensional Computed Tomography", "15. Life on land", "Plant Roots", "Zea mays", "620", "Mechanical Phenomena"]}, "links": [{"href": "https://eprints.soton.ac.uk/394374/1/__filestore.soton.ac.uk_users_fh1d15_mydesktop_Keyes_et_al_Journal_of_Biomechaincs_Root_DVC_2016.pdf"}, {"href": "https://doi.org/10.1016/j.jbiomech.2016.04.023"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Biomechanics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1016/j.jbiomech.2016.04.023", "name": "item", "description": "10.1016/j.jbiomech.2016.04.023", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1016/j.jbiomech.2016.04.023"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-06-01T00:00:00Z"}}, {"id": "10.1021/acs.est.3c08734", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:17:26Z", "type": "Journal Article", "created": "2024-04-10", "title": "Plastic Fruit Stickers in Industrial Composting\u2500Surface and Structural Alterations Revealed by Electron Microscopy and Computed Tomography", "description": "Often large quantities of plastics are found in compost, with price look-up stickers being a major but little-explored component in the contamination path. Stickers glued to fruit or vegetable peels usually remain attached to the organic material despite sorting processes in the composting plant. Here, we investigated the effects of industrial composting on the structural alterations of these stickers. Commercial polypropylene (PP) stickers on banana peels were added to a typical organic material mixture for processing in an industrial composting plant and successfully resampled after a prerotting (11 days) and main rotting step (25 days). Afterward, both composted and original stickers were analyzed for surface and structural changes via scanning electron microscopy, Fourier-transform infrared spectroscopy, and micro- and nano-X-ray computed tomography (CT) combined with deep learning approaches. The composting resulted in substantial surface changes and degradation in the form of microbial colonization, deformation, and occurrence of cracks in all stickers. Their pore volumes increased from 16.7% in the original sticker to 26.3% at the end of the compost process. In a similar way, the carbonyl index of the stickers increased. Micro-CT images additionally revealed structural changes in the form of large adhesions that penetrated the surface of the sticker. These changes were accompanied by delamination after 25 days of composting, thus overall hinting at the degradation of the stickers and the subsequent formation of smaller microplastic pieces.", "keywords": ["Technology", "ddc:600", "ddc:550", "Composting", "600", "02 engineering and technology", "540", "Polypropylenes", "01 natural sciences", "620", "Soil", "Fruit", "Microscopy", " Electron", " Scanning", "info:eu-repo/classification/ddc/600", "Tomography", " X-Ray Computed", "0210 nano-technology", "Plastics", "0105 earth and related environmental sciences"]}, "links": [{"href": "https://pubs.acs.org/doi/pdf/10.1021/acs.est.3c08734"}, {"href": "https://doi.org/10.1021/acs.est.3c08734"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Environmental%20Science%20%26amp%3B%20Technology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1021/acs.est.3c08734", "name": "item", "description": "10.1021/acs.est.3c08734", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1021/acs.est.3c08734"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2024-04-10T00:00:00Z"}}, {"id": "10.1071/sr18210", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-28T16:18:03Z", "type": "Journal Article", "created": "2018-11-16", "title": "Effect of long-term irrigation and tillage practices on X-ray CT and gas transport derived pore-network characteristics", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p> The gas transport parameters, diffusivity and air-filled porosity are crucial for soil aeration, microbial activity and greenhouse gas emission, and directly depend on soil structure. In this study, we analysed the effect of long-term tillage and irrigation practices on the surface structure of an arable soil in New Zealand. Our hypothesis was that topsoil structure would change under intensification of arable production, affecting gas exchange. Intact soil cores were collected from plots under intensive tillage (IT) and direct drill (DD), irrigated or rainfed. In total, 32 cores were scanned by X-ray computed tomography (CT) to derive the pore network &amp;gt;30\u00b5m. The cores were then used to measure soil-gas diffusivity, air-permeability and air-filled porosity of pores close to the resolution of the X-ray CT scans, namely \u226530\u00b5m. The gas measurements allow the calculation of pore-network connectivity and tortuosity parameters, which were compared with the CT-derived structural characteristics. Long-term irrigation had little effect on any of the parameters analysed. Total porosity tended to be lower under IT than DD, whereas the CT-derived porosity was comparable. Both the CT-derived mean pore diameter (MPD) and other morphological parameters, as well as gas measurement-derived parameters, highlighted a less developed structure under IT. The differences in the functional pore-network structure were attributed to SOC depletion and the mechanical disturbance through IT. Significant correlations between CT-derived parameters and functional gas transport parameters such as tortuosity and MPD were found, which suggest that X-ray CT could be useful in the prediction of gas transport. </p></article>", "keywords": ["AGRICULTURE", "soil structure.", "P-parameter", "Soil structure", "carbon depletion", "MANAGEMENT", "COMPUTED-TOMOGRAPHY", "PERMEABILITY", "CONSERVATION TILLAGE", "Dexter index", "Intensive tillage", "SOIL ORGANIC-CARBON", "carbon depletion; Dexter index; intensive tillage; P -parameter; soil organic carbon; soil structure.; Environmental Science (miscellaneous); Soil Science; Earth-Surface Processes", "P -parameter", "LOAM SOIL", "Soil organic carbon", "POROSITY", "04 agricultural and veterinary sciences", "15. Life on land", "soil organic carbon", "NO-TILL", "NITROGEN", "[SDE.MCG] Environmental Sciences/Global Changes", "0401 agriculture", " forestry", " and fisheries", "Carbon depletion", "soil structure", "intensive tillage"]}, "links": [{"href": "https://www.publish.csiro.au/SR/pdf/SR18210"}, {"href": "https://doi.org/10.1071/sr18210"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1071/sr18210", "name": "item", "description": "10.1071/sr18210", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1071/sr18210"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-01-01T00:00:00Z"}}, {"id": "10.1071/sr18293", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:18:03Z", "type": "Journal Article", "created": "2019-02-21", "title": "Orchard management and preferential flow in Andosols \u2013 comparing two kiwifruit orchards in New Zealand", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Sustainable horticulture depends on the integrity of soil functions, which directly depend on soil architecture affecting aggregation, root growth, as well as liquid and gas permeability. We hypothesised that changes in soil architecture resulting from feedback mechanisms between management, soil organic carbon contents (SOC), biota and vegetation can be captured with X-ray computed tomography (CT), and that these affect the soil filtering function, which thus, can be manipulated through orchard management. We compared the transport of copper, a widely used fungicide, through intact soil cores from vine rows of kiwifruit orchards under organic and integrated management. We first derived 3D-macropore characteristics from CT-images, followed by leaching a pulse of copper and a tracer through the same cores. The organic orchard soil had a significantly higher SOC content than the integrated orchard soil, and this was positively correlated with total porosity. Macropores (&amp;gt;92 \u00b5m) were larger with a higher connectivity, but significantly fewer in the organic than the integrated orchard soil. This resulted in a lower macroporosity and a better copper filtering capacity of the organic than the integrated orchard soil. Copper distribution was reasonably predicted when combining SOC contents, pH and macropore characteristics. Significant relationships between soil parameters and indicators of the strength of preferential flow verified that CT-derived macropore characteristics can be used to predict functional solute transport parameters. The relevance of our results and relationships observed between macropore characteristics, functional indicators of preferential flow and the fate of copper needs verification with samples representing more soils and sites.</p></article>", "keywords": ["X-ray computed tomography", "[SDE] Environmental Sciences", "2. Zero hunger", "[SDE.MCG]Environmental Sciences/Global Changes", "carbon", "computed tomography", "04 agricultural and veterinary sciences", "15. Life on land", "630", "X-ray", "kiwifruit orchard", "soil architecture", "[SDE.MCG] Environmental Sciences/Global Changes", "[SDE]Environmental Sciences", "filtering function", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://www.publish.csiro.au/SR/pdf/SR18293"}, {"href": "https://doi.org/10.1071/sr18293"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1071/sr18293", "name": "item", "description": "10.1071/sr18293", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1071/sr18293"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-02-22T00:00:00Z"}}, {"id": "10.1071/sr21268", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-28T16:18:03Z", "type": "Journal Article", "created": "2022-01-18", "title": "Lessons from a landmark 1991 article on soil structure: distinct precedence of non-destructive assessment and benefits of fresh perspectives in soil research", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>In 1991, at the launch of a national symposium devoted to soil structure, the Australian Society of Soil Science invited Professor John Letey to deliver a keynote address, which was later published in the society\u2019s journal. In his lecture, he shared the outcome of his reflexion about what the assessment of soil structure should amount to, in order to produce useful insight into the functioning of soils. His viewpoint was that the focus should be put on the openings present in the structure, rather than on the chunks of material resulting from its mechanical dismantlement. In the present article, we provide some historical background for Letey\u2019s analysis, and try to explain why it took a number of years for the paradigm shift that he advocated to begin to occur. Over the last decade, his perspective that soil structure needs to be characterised via non-destructive methods appears to have gained significant momentum, which is likely to increase further in the near future, as we take advantage of recent technological advances. Other valuable lessons that one can derive from Letey\u2019s pioneering article relate to the extreme value for everyone, even neophytes, to constantly ask questions about where research on given topics is heading, what its goals are, and whether the methods that are used at a certain time are optimal.</p></article>", "keywords": ["570", "soil image analysis", "soil microorganisms", "[SDE.MCG]Environmental Sciences/Global Changes", "Soil measuring", "earthworms", "micromorphology", "Aggregate stability", "Soil functions", "01 natural sciences", "630", "Soil fauna", "soil organic matter", "Earthworms", "Micromorphology", "Computed tomography", "aggregate stability", "0105 earth and related environmental sciences", "soil measuring", "2. Zero hunger", "Soil organic matter", "computed tomography", "04 agricultural and veterinary sciences", "soil functions", "15. Life on land", "[SDE.MCG] Environmental Sciences/Global Changes", "Soil image analysis", "0401 agriculture", " forestry", " and fisheries", "soil fauna", "earthworms; micromorphology", "Soil microorganisms"]}, "links": [{"href": "https://doi.org/10.1071/sr21268"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1071/sr21268", "name": "item", "description": "10.1071/sr21268", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1071/sr21268"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-19T00:00:00Z"}}, {"id": "10.1056/nejm199703063361004", "type": "Feature", "geometry": null, "properties": {"license": "unspecified", "updated": "2026-07-28T16:17:58Z", "type": "Journal Article", "created": "2002-07-27", "title": "Sympathetic Cardioneuropathy in Dysautonomias", "description": "The classification of dysautonomias has been confusing, and the pathophysiology obscure. We examined sympathetic innervation of the heart in patients with acquired, idiopathic dysautonomias using thoracic positron-emission tomography and assessments of the entry rate of the sympathetic neurotransmitter norepinephrine into the cardiac venous drainage (cardiac norepinephrine spillover). We related the laboratory findings to signs of sympathetic neurocirculatory failure (orthostatic hypotension and abnormal blood-pressure responses associated with the Valsalva maneuver), central neural degeneration, and responsiveness to treatment with levodopa-carbidopa (Sinemet).Cardiac scans were obtained after intravenous administration of 6-[18F]fluorodopamine in 26 patients with dysautonomia. Fourteen had sympathetic neurocirculatory failure--three with no signs of central neurodegeneration (pure autonomic failure), two with parkinsonism responsive to treatment with levodopa-carbidopa, and nine with central neurodegeneration unresponsive to treatment with levodopa-carbidopa (the Shy-Drager syndrome). The rates of cardiac norepinephrine spillover were estimated on the basis of concentrations of intravenously infused [3H]norepinephrine during catheterization of the right side of the heart.Patients with pure autonomic failure or parkinsonism and sympathetic neurocirculatory failure had no myocardial 6-[18F]fluorodopamine-derived radioactivity or cardiac norepinephrine spillover, indicating loss of myocardial sympathetic-nerve terminals, whereas patients with the Shy-Drager syndrome had increased levels of 6-[18F]fluorodopamine-derived radioactivity, indicating intact sympathetic terminals and absent nerve traffic. Patients with dysautonomia who did not have sympathetic neurocirculatory failure had normal levels of 6-[18F]fluorodopamine-derived radioactivity in myocardium and normal rates of cardiac norepinephrine spillover.The results of 6-[18F]fluorodopamine positron-emission tomography and neurochemical analyses support a new clinical pathophysiologic classification of dysautonomias, based on the occurrence of sympathetic neurocirculatory failure, signs of central neurodegeneration, and responsiveness to levodopa-carbidopa.", "keywords": ["Adult", "Aged", " 80 and over", "Fluorine Radioisotopes", "Nitrogen Radioisotopes", "Sympathetic Nervous System", "Epinephrine", "Dopamine", "Myocardium", "Shy-Drager Syndrome", "Heart", "Parkinson Disease", "Middle Aged", "3. Good health", "Diagnosis", " Differential", "Levodopa", "Norepinephrine", "Autonomic Nervous System Diseases", "Ammonia", "Parasympathetic Nervous System", "Reference Values", "Coronary Circulation", "Humans", "Aged", "Tomography", " Emission-Computed"], "contacts": [{"organization": "Graeme Eisenhofer, Richard O. Cannon, Irwin J. Kopin, Courtney Holmes, David S. Goldstein,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.1056/nejm199703063361004"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20England%20Journal%20of%20Medicine", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1056/nejm199703063361004", "name": "item", "description": "10.1056/nejm199703063361004", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1056/nejm199703063361004"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1997-01-01T00:00:00Z"}}, {"id": "10.1071/sr18271", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:18:03Z", "type": "Journal Article", "created": "2019-08-26", "title": "Impacts of land use on hydrodynamic properties and pore architecture of volcanic soils from the Mexican Highlands", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Volcanic soils are important resources because of their unique mineralogical and physical characteristics, and allophanic Andosols represent some of the world\u2019s most fertile soils. However, their unique properties can be lost when cultivated. Most soils in the Central Valley, Mexico, are derived from volcanic materials. This valley encompasses one of the largest water supply systems in the world by volume, but is affected by soil degradation and deforestation. Sustainably managing volcanic soils requires understanding how land use affects their hydrodynamic properties. Gas adsorption and mercury intrusion porosimetry, water retention curves, tension infiltrometry and X-ray tomography were used to describe pore structure characteristics. Two volcanic soils (one Andosol and one derived from indurated tuff \u2013 Tepetates), three land uses (maize monoculture, maize\u2013wheat rotation and fallow) and two horizons (Ap and A2 for maize monoculture and maize\u2013wheat rotation) were studied. Tillage affected topsoil by increasing the sand fraction by 38% and decreasing total porosity and macroporosity by 23% and 40% respectively. Macropore size was reduced and the number of isolated macropores was higher in the tilled layer under maize, compared with untilled subsoil. The plot under maize\u2013wheat rotation had lower allophane content, and saturated hydraulic conductivity was reduced by nearly an order of magnitude and water retention by half, compared with maize and fallow plots. Compared with Andosols, Tepetates showed differences in mineralogical composition with lower contents of amorphous compounds and in its porous network characteristics with twice the total and percolating macroporosity compared with the maize plot. Its high content of organic carbon (3.5%) seemed beneficial for its hydrodynamic properties. Sustainable agricultural management of these volcanic soils requires reducing mechanised tillage, avoiding periods when soil is bare, not applying maize\u2013wheat rotation and applying maize\u2013fallow rotation allowing natural vegetation growth.</p></article>", "keywords": ["2. Zero hunger", "550", "[SDE.MCG]Environmental Sciences/Global Changes", "04 agricultural and veterinary sciences", "15. Life on land", "630", "6. Clean water", "12. Responsible consumption", "[SDE.MCG] Environmental Sciences/Global Changes", "pore size distribution", "13. Climate action", "Andosol; pore size distribution; X-ray tomography", "0401 agriculture", " forestry", " and fisheries", "X-ray tomography", "Andosol"]}, "links": [{"href": "https://doi.org/10.1071/sr18271"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1071/sr18271", "name": "item", "description": "10.1071/sr18271", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1071/sr18271"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-01-01T00:00:00Z"}}, {"id": "10.1093/jxb/erv544", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:18:21Z", "type": "Journal Article", "created": "2016-01-20", "title": "Image-based modelling of nutrient movement in and around the rhizosphere", "description": "In this study, we developed a spatially explicit model for nutrient uptake by root hairs based on X-ray computed tomography images of the rhizosphere soil structure. This work extends our previous work to larger domains and hence is valid for longer times. Unlike the model used previously, which considered only a small region of soil about the root, we considered an effectively infinite volume of bulk soil about the rhizosphere. We asked the question: At what distance away from root surfaces do the specific structural features of root-hair and soil aggregate morphology not matter because average properties start dominating the nutrient transport? The resulting model was used to capture bulk and rhizosphere soil properties by considering representative volumes of soil far from the root and adjacent to the root, respectively. By increasing the size of the volumes that we considered, the diffusive impedance of the bulk soil and root uptake were seen to converge. We did this for two different values of water content. We found that the size of region for which the nutrient uptake properties converged to a fixed value was dependent on the water saturation. In the fully saturated case, the region of soil we needed to consider was only of radius 1.1mm for poorly soil-mobile species such as phosphate. However, in the case of a partially saturated medium (relative saturation 0.3), we found that a radius of 1.4mm was necessary. This suggests that, in addition to the geometrical properties of the rhizosphere, there is an additional effect of soil moisture properties, which extends further from the root and may relate to other chemical changes in the rhizosphere. The latter were not explicitly included in our model.", "keywords": ["0301 basic medicine", "550", "Oryza", "04 agricultural and veterinary sciences", "15. Life on land", "Models", " Biological", "Plant Roots", "630", "03 medical and health sciences", "Imaging", " Three-Dimensional", "Rhizosphere", "0401 agriculture", " forestry", " and fisheries", "Tomography", " X-Ray Computed", "Research Paper"]}, "links": [{"href": "https://doi.org/10.1093/jxb/erv544"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20Experimental%20Botany", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1093/jxb/erv544", "name": "item", "description": "10.1093/jxb/erv544", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1093/jxb/erv544"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2016-01-05T00:00:00Z"}}, {"id": "10.1098/rsif.2017.0560", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:18:25Z", "type": "Journal Article", "created": "2017-11-08", "title": "Measurement of micro-scale soil deformation around roots using four-dimensional synchrotron tomography and image correlation", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>This study applied time lapse (four-dimensional) synchrotron X-ray computed tomography to observe micro-scale interactions between plant roots and soil. Functionally contrasting maize root tips were repeatedly imaged during ingress into soil columns of varying water content and compaction. This yielded sequences of three-dimensional densiometric data, representing time-resolved geometric soil and root configurations at the micronmetre scale. These data were used as inputs for two full-field kinematic quantification methods, which enabled the analysis of three-dimensional soil deformation around elongating roots. Discrete object tracking was used to track rigid mineral grains, while continuum digital volume correlation was used to track grey-level patterns within local sub-volumes. These techniques both allowed full-field soil displacements to be quantified at an intra-rhizosphere spatial sampling scale of less than 300 \u00b5m. Significant differences in deformation mechanisms were identified around different phenotypes under different soil conditions. A uniquely strong contrast was observed between intact and de-capped roots grown in dry, compacted soil. This provides evidence that functional traits of the root cap significantly reduce the amount of soil disturbance per unit of root elongation, with this effect being particularly significant in drier soil.</p></article>", "keywords": ["2. Zero hunger", "0301 basic medicine", "Soil", "0303 health sciences", "03 medical and health sciences", "15. Life on land", "Tomography", " X-Ray Computed", "Plant Roots", "Zea mays", "Synchrotrons"]}, "links": [{"href": "https://royalsocietypublishing.org/doi/pdf/10.1098/rsif.2017.0560"}, {"href": "https://doi.org/10.1098/rsif.2017.0560"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Journal%20of%20The%20Royal%20Society%20Interface", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1098/rsif.2017.0560", "name": "item", "description": "10.1098/rsif.2017.0560", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1098/rsif.2017.0560"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-11-01T00:00:00Z"}}, {"id": "10.1111/nph.17980", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:19:00Z", "type": "Journal Article", "created": "2022-01-19", "title": "Multimodal correlative imaging and modelling of phosphorus uptake from soil by hyphae of mycorrhizal fungi", "description": "Summary<p>   <p>Phosphorus (P) is essential for plant growth. Arbuscular mycorrhizal fungi (AMF) aid its uptake by acquiring P from sources distant from roots in return for carbon. Little is known about how AMF colonise soil pore\uffe2\uff80\uff90space, and models of AMF\uffe2\uff80\uff90enhanced P\uffe2\uff80\uff90uptake are poorly validated.</p>  <p>We used synchrotron X\uffe2\uff80\uff90ray computed tomography to visualize mycorrhizas in soil and synchrotron X\uffe2\uff80\uff90ray fluorescence/X\uffe2\uff80\uff90ray absorption near edge structure (XRF/XANES) elemental mapping for P, sulphur (S) and aluminium (Al) in combination with modelling.</p>  <p>We found that AMF inoculation had a suppressive effect on colonisation by other soil fungi and identified differences in structure and growth rate between hyphae of AMF and nonmycorrhizal fungi. Our results showed that AMF co\uffe2\uff80\uff90locate with areas of high P and low Al, and preferentially associate with organic\uffe2\uff80\uff90type P species over Al\uffe2\uff80\uff90rich inorganic P.</p>  <p>We discovered that AMF avoid Al\uffe2\uff80\uff90rich areas as a source of P. Sulphur\uffe2\uff80\uff90rich regions were found to be correlated with higher hyphal density and an increased organic\uffe2\uff80\uff90associated P\uffe2\uff80\uff90pool, whilst oxidized S\uffe2\uff80\uff90species were found close to AMF hyphae. Increased S oxidation close to AMF suggested the observed changes were microbiome\uffe2\uff80\uff90related. Our experimentally\uffe2\uff80\uff90validated model led to an estimate of P\uffe2\uff80\uff90uptake by AMF hyphae that is an order of magnitude lower than rates previously estimated \uffe2\uff80\uff93 a result with significant implications for the modelling of plant\uffe2\uff80\uff93soil\uffe2\uff80\uff93AMF interactions.</p>  </p", "keywords": ["580", "X-ray computed tomography", "570", "Research", "X-ray fluorescence", "Fungi", "Hyphae", "500", "Phosphorus", "mycorrhizas", "04 agricultural and veterinary sciences", "15. Life on land", "plant phosphorus uptake", "Plant Roots", "Soil", "rhizosphere modelling", "Mycorrhizae", "synchrotron", "0401 agriculture", " forestry", " and fisheries", "Soil Microbiology"]}, "links": [{"href": "https://eprints.soton.ac.uk/454110/1/Keyes_et_al_Myco_Paper_TR_04_01_2022_unmarked.pdf"}, {"href": "https://eprints.soton.ac.uk/454110/2/Figures_TR_22_12_2021.pdf"}, {"href": "https://eprints.soton.ac.uk/454110/3/SI_1_TR_22_12_2021_no_markup.pdf"}, {"href": "https://eprints.soton.ac.uk/454110/4/SI_2_TR_22_12_2021.pdf"}, {"href": "https://doi.org/10.1111/nph.17980"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.17980", "name": "item", "description": "10.1111/nph.17980", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.17980"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-02-15T00:00:00Z"}}, {"id": "10.1111/nph.15516", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:19:00Z", "type": "Journal Article", "created": "2018-10-06", "title": "Imaging microstructure of the barley rhizosphere: particle packing and root hair influences", "description": "Summary<p>   <p>Soil adjacent to roots has distinct structural and physical properties from bulk soil, affecting water and solute acquisition by plants. Detailed knowledge on how root activity and traits such as root hairs affect the three\uffe2\uff80\uff90dimensional pore structure at a fine scale is scarce and often contradictory.</p>  <p>Roots of hairless barley (Hordeum vulgare L. cv Optic) mutant (NRH) and its wildtype (WT) parent were grown in tubes of sieved (&lt;250\uffc2\uffa0\uffce\uffbcm) sandy loam soil under two different water regimes. The tubes were scanned by synchrotron\uffe2\uff80\uff90based X\uffe2\uff80\uff90ray computed tomography to visualise pore structure at the soil\uffe2\uff80\uff93root interface. Pore volume fraction and pore size distribution were analysed vs distance within 1\uffc2\uffa0mm of the root surface.</p>  <p>Less dense packing of particles at the root surface was hypothesised to cause the observed increased pore volume fraction immediately next to the epidermis. The pore size distribution was narrower due to a decreased fraction of larger pores. There were no statistically significant differences in pore structure between genotypes or moisture conditions.</p>  <p>A model is proposed that describes the variation in porosity near roots taking into account soil compaction and the surface effect at the root surface.</p>  </p>", "keywords": ["name=Physiology", "STABILIZATION", "Physiology", "EP/M020355/1", "Supplementary Data", "QH301 Biology", "Plant Science", "Supplementary data available", "Plant Roots", "630", "noninvasive imaging", "Soil", "646809DIMR", "STRENGTH", "BB/J00868/1", "Hordeum vulgare", "2. Zero hunger", "04 agricultural and veterinary sciences", "Rhizosphere", "COMPRESSION", "soil structure", "Porosity", "European Research Council", "/dk/atira/pure/subjectarea/asjc/1300/1314", "/dk/atira/pure/subjectarea/asjc/1100/1110", "root hairs", "COMPACTION", "QH301", "Imaging", " Three-Dimensional", "synchrotron", "particle packing", "SOIL-STRUCTURE", "BB/L025620/1", "WATER-STRESS", "NE/L00237/1", "580", "ELONGATION", "Civil_env_eng", "Natural Environment Research Council (NERC)", "POROSITY", "Water", "Hordeum", "15. Life on land", "Engineering and Physical Sciences Research Council (EPSRC)", "Mutation", "Biotechnology and Biological Sciences Research Council (BBSRC)", "0401 agriculture", " forestry", " and fisheries", "PENETRATION", "name=Plant Science", "rhizosphere", "Tomography", " X-Ray Computed", "MAIZE", "BB/P004180/1", "Synchrotrons", "BB/L025825/1"]}, "links": [{"href": "https://repository.uwl.ac.uk/id/eprint/5489/1/AS6808504337817661539338801587_content_1.pdf"}, {"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.15516"}, {"href": "https://doi.org/10.1111/nph.15516"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.15516", "name": "item", "description": "10.1111/nph.15516", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.15516"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-11-20T00:00:00Z"}}, {"id": "10.1111/nph.16242", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:19:00Z", "type": "Journal Article", "created": "2019-10-08", "title": "Root\u2010induced soil deformation influences Fe, S and P: rhizosphere chemistry investigated using synchrotron XRF and XANES", "description": "Summary<p>   <p>Rhizosphere soil has distinct physical and chemical properties from bulk soil. However, besides root\uffe2\uff80\uff90induced physical changes, chemical changes have not been extensively measured in situ on the pore scale.</p>  <p>In this study, we couple structural information, previously obtained using synchrotron X\uffe2\uff80\uff90ray computed tomography (XCT), with synchrotron X\uffe2\uff80\uff90ray fluorescence microscopy (XRF) and X\uffe2\uff80\uff90ray absorption near\uffe2\uff80\uff90edge structure (XANES) to unravel chemical changes induced by plant roots.</p>  <p>Our results suggest that iron (Fe) and sulfur (S) increase notably in the direct vicinity of the root via solubilization and microbial activity. XANES further shows that Fe is slightly reduced, S is increasingly transformed into sulfate (SO42\uffe2\uff88\uff92) and phosphorus (P) is increasingly adsorbed to humic substances in this enrichment zone. In addition, the ferrihydrite fraction decreases drastically, suggesting the preferential dissolution and the formation of more stable Fe oxides. Additionally, the increased transformation of organic S to sulfate indicates that the microbial activity in this zone is increased. These changes in soil chemistry correspond to the soil compaction zone as previously measured via XCT.</p>  <p>The fact that these changes are colocated near the root and the compaction zone suggests that decreased permeability as a result of soil structural changes acts as a barrier creating a zone with increased rhizosphere chemical interactions via surface\uffe2\uff80\uff90mediated processes, microbial activity and acidification.</p>  </p", "keywords": ["2. Zero hunger", "550", "Iron", "Hordeum", "Phosphorus", "04 agricultural and veterinary sciences", "15. Life on land", "Plant Roots", "Soil", "Microscopy", " Fluorescence", "Rhizosphere", "0401 agriculture", " forestry", " and fisheries", "Tomography", " X-Ray Computed", "Sulfur", "Synchrotrons"]}, "links": [{"href": "https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.16242"}, {"href": "https://doi.org/10.1111/nph.16242"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/nph.16242", "name": "item", "description": "10.1111/nph.16242", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/nph.16242"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-11-12T00:00:00Z"}}, {"id": "10.1111/pce.12983", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:19:01Z", "type": "Journal Article", "created": "2017-05-15", "title": "Quantification of root water uptake in soil using X\u2010ray computed tomography and image\u2010based modelling", "description": "Abstract<p>Spatially averaged models of root\uffe2\uff80\uff93soil interactions are often used to calculate plant water uptake. Using a combination of X\uffe2\uff80\uff90ray computed tomography (CT) and image\uffe2\uff80\uff90based modelling, we tested the accuracy of this spatial averaging by directly calculating plant water uptake for young wheat plants in two soil types. The root system was imaged using X\uffe2\uff80\uff90ray CT at 2, 4, 6, 8 and 12\uffc2\uffa0d after transplanting. The roots were segmented using semi\uffe2\uff80\uff90automated root tracking for speed and reproducibility. The segmented geometries were converted to a mesh suitable for the numerical solution of Richards' equation. Richards' equation was parameterized using existing pore scale studies of soil hydraulic properties in the rhizosphere of wheat plants. Image\uffe2\uff80\uff90based modelling allows the spatial distribution of water around the root to be visualized and the fluxes into the root to be calculated. By comparing the results obtained through image\uffe2\uff80\uff90based modelling to spatially averaged models, the impact of root architecture and geometry in water uptake was quantified. We observed that the spatially averaged models performed well in comparison to the image\uffe2\uff80\uff90based models with &lt;2% difference in uptake. However, the spatial averaging loses important information regarding the spatial distribution of water near the root system.</p", "keywords": ["0106 biological sciences", "0301 basic medicine", "2. Zero hunger", "0303 health sciences", "550", "Water", "15. Life on land", "01 natural sciences", "Models", " Biological", "Plant Roots", "6. Clean water", "Soil", "03 medical and health sciences", "Imaging", " Three-Dimensional", "Tomography", " X-Ray Computed", "Porosity"]}, "links": [{"href": "https://eprints.nottingham.ac.uk/42292/1/170405_WP2_Paper_update_final%20Mooney.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/pce.12983"}, {"href": "https://doi.org/10.1111/pce.12983"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%2C%20Cell%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/pce.12983", "name": "item", "description": "10.1111/pce.12983", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/pce.12983"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-07-05T00:00:00Z"}}, {"id": "10.1111/pce.13638", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:19:01Z", "type": "Journal Article", "created": "2019-08-05", "title": "Soil carbon dioxide venting through rice roots", "description": "Abstract<p>The growth of rice in submerged soils depends on its ability to form continuous gas channels\uffe2\uff80\uff94aerenchyma\uffe2\uff80\uff94through which oxygen (O2) diffuses from the shoots to aerate the roots. Less well understood is the extent to which aerenchyma permits venting of respiratory carbon dioxide (CO2) in the opposite direction. Large, potentially toxic concentrations of dissolved CO2 develop in submerged rice soils. We show using X\uffe2\uff80\uff90ray computed tomography and image\uffe2\uff80\uff90based mathematical modelling that CO2 venting through rice roots is far greater than thought hitherto. We found rates of venting equivalent to a third of the daily CO2 fixation in photosynthesis. Without this venting through the roots, the concentrations of CO2 and associated bicarbonate (HCO3\uffe2\uff88\uff92) in root cells would have been well above levels known to be toxic to roots. Removal of CO2 and hence carbonic acid (H2CO3) from the soil was sufficient to increase the pH in the rhizosphere close to the roots by 0.7 units, which is sufficient to solubilize or immobilize various nutrients and toxicants. A sensitivity analysis of the model showed that such changes are expected for a wide range of plant and soil conditions.</p", "keywords": ["580", "0106 biological sciences", "0301 basic medicine", "570", "Oryza", "Original Articles", "Carbon Dioxide", "15. Life on land", "Models", " Biological", "Plant Roots", "01 natural sciences", "6. Clean water", "biological transport", "X\u2010ray computed tomography", "Soil", "03 medical and health sciences", "13. Climate action", "biological models"]}, "links": [{"href": "https://eprints.soton.ac.uk/433011/1/_system_appendPDF_proof_hi_4.pdf"}, {"href": "https://eprints.soton.ac.uk/433011/2/Kirk_et_al_2019_Plant_Cell_Environment.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/pce.13638"}, {"href": "https://doi.org/10.1111/pce.13638"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%2C%20Cell%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/pce.13638", "name": "item", "description": "10.1111/pce.13638", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/pce.13638"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-08-19T00:00:00Z"}}, {"id": "10.1111/ppa.13674", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:19:02Z", "type": "Journal Article", "created": "2022-11-11", "title": "The impact of xylem geometry on olive cultivar resistance to Xylella fastidiosa: An image\u2010based study", "description": "Abstract<p>Xylella fastidiosa is a xylem\uffe2\uff80\uff90limited plant pathogen infecting many crops globally and is the cause of the recent olive disease epidemic in Italy. One strategy proposed to mitigate losses is to replant susceptible crops with resistant varieties. Several genetic, biochemical and biophysical traits are associated to X. fastidiosa disease resistance. However, mechanisms underpinning resistance are poorly understood. We hypothesize that the susceptibility of olive cultivars to infection will correlate to xylem vessel diameters, with narrower vessels being resistant to air embolisms and having slower flow rates limiting pathogen spread. To test this, we scanned stems from four olive cultivars of varying susceptibility to X. fastidiosa using X\uffe2\uff80\uff90ray computed tomography. Scans were processed by a bespoke methodology that segmented vessels, facilitating diameter measurements. Though significant differences were not found comparing stem\uffe2\uff80\uff90average vessel section diameters among cultivars, they were found when comparing diameter distributions. Moreover, the measurements indicated that although vessel diameter distributions may play a role regarding the resistance of Leccino, it is unlikely they do for FS17. Considering Young\uffe2\uff80\uff93Laplace and Hagen\uffe2\uff80\uff93Poiseuille equations, we inferred differences in embolism susceptibility and hydraulic conductivity of the vasculature. Our results suggest susceptible cultivars, having a greater proportion of larger vessels, are more vulnerable to air embolisms. In addition, results suggest that under certain pressure conditions, functional vasculature in susceptible cultivars could be subject to greater stresses than in resistant cultivars. These results support investigation into xylem morphological screening to help inform olive replanting. Furthermore, our framework could test the relevance of xylem geometry to disease resistance in other crops.</p", "keywords": ["2. Zero hunger", "X-ray computed tomography", "0106 biological sciences", "15. Life on land", "Xylella", "01 natural sciences", "630", "olive dieback"]}, "links": [{"href": "https://iris.cnr.it/bitstream/20.500.14243/420312/1/prod_473732-doc_193088.pdf"}, {"href": "https://eprints.soton.ac.uk/471748/9/Plant_Pathology_2022_Walker_The_Impact_of_Xylem_Geometry_on_Olive_Cultivar_Resistance_to_Xylella_fastidiosa_An.pdf"}, {"href": "https://doi.org/10.1111/ppa.13674"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Pathology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/ppa.13674", "name": "item", "description": "10.1111/ppa.13674", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/ppa.13674"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-11-19T00:00:00Z"}}, {"id": "10.1111/ppa.13835", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:19:02Z", "type": "Journal Article", "created": "2023-11-28", "title": "A high\u2010throughput analysis of high\u2010resolution X\u2010ray CT images of stems of olive and citrus plants resistant and susceptible to Xylella fastidiosa", "description": "Abstract<p>The bacterial plant pathogen Xylella fastidiosa causes disease in several globally important crops. However, some cultivars harbour reduced bacterial loads and express few symptoms. Evidence considering plant species in isolation suggests xylem structure influences cultivar susceptibility to X. fastidiosa. We test this theory more broadly by analysing high\uffe2\uff80\uff90resolution synchrotron X\uffe2\uff80\uff90ray computed tomography of healthy and infected plant vasculature from two taxonomic groups containing susceptible and resistant varieties: two citrus cultivars (sweet orange cv. Pera, tangor cv. Murcott) and two olive cultivars (Koroneiki, Leccino). Results found the susceptible plants had more vessels than resistant ones, which could promote within\uffe2\uff80\uff90host pathogen spread. However, features associated with resistance were not shared by citrus and olive. While xylem vessels in resistant citrus stems had comparable diameters to those in susceptible plants, resistant olives had narrower vessels that could limit biofilm spread. And while differences among olive cultivars were not detected, results suggest greater vascular connectivity in resistant compared to susceptible citrus plants. We hypothesize that this provides alternate flow paths for sustaining hydraulic functionality under infection. In summary, this work elucidates different physiological resistance mechanisms between two taxonomic groups, while supporting the existence of an intertaxonomical metric that could speed up the identification of candidate\uffe2\uff80\uff90resistant plants.</p", "keywords": ["2. Zero hunger", "resistance", "X-ray computed tomography", "Xylella fastidiosa", "Olive quick decline syndrome", "citrus variegated chlorosis", "olive quick decline syndrome", "Resistance", "Citrus variegated chlorosis", "15. Life on land", "xylem", "630"]}, "links": [{"href": "https://doi.org/10.1111/ppa.13835"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Pathology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.1111/ppa.13835", "name": "item", "description": "10.1111/ppa.13835", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.1111/ppa.13835"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-11-27T00:00:00Z"}}, {"id": "2916609369", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:24:52Z", "type": "Journal Article", "created": "2019-02-22", "title": "Orchard management and preferential flow in Andosols \u2013 comparing two kiwifruit orchards in New Zealand", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Sustainable horticulture depends on the integrity of soil functions, which directly depend on soil architecture affecting aggregation, root growth, as well as liquid and gas permeability. We hypothesised that changes in soil architecture resulting from feedback mechanisms between management, soil organic carbon contents (SOC), biota and vegetation can be captured with X-ray computed tomography (CT), and that these affect the soil filtering function, which thus, can be manipulated through orchard management. We compared the transport of copper, a widely used fungicide, through intact soil cores from vine rows of kiwifruit orchards under organic and integrated management. We first derived 3D-macropore characteristics from CT-images, followed by leaching a pulse of copper and a tracer through the same cores. The organic orchard soil had a significantly higher SOC content than the integrated orchard soil, and this was positively correlated with total porosity. Macropores (&amp;gt;92\u00b5m) were larger with a higher connectivity, but significantly fewer in the organic than the integrated orchard soil. This resulted in a lower macroporosity and a better copper filtering capacity of the organic than the integrated orchard soil. Copper distribution was reasonably predicted when combining SOC contents, pH and macropore characteristics. Significant relationships between soil parameters and indicators of the strength of preferential flow verified that CT-derived macropore characteristics can be used to predict functional solute transport parameters. The relevance of our results and relationships observed between macropore characteristics, functional indicators of preferential flow and the fate of copper needs verification with samples representing more soils and sites.</p></article>", "keywords": ["X-ray computed tomography", "[SDE] Environmental Sciences", "2. Zero hunger", "[SDE.MCG]Environmental Sciences/Global Changes", "carbon", "computed tomography", "04 agricultural and veterinary sciences", "15. Life on land", "630", "X-ray", "kiwifruit orchard", "soil architecture", "[SDE.MCG] Environmental Sciences/Global Changes", "[SDE]Environmental Sciences", "filtering function", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://www.publish.csiro.au/SR/pdf/SR18293"}, {"href": "https://doi.org/2916609369"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2916609369", "name": "item", "description": "2916609369", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2916609369"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-01-01T00:00:00Z"}}, {"id": "10.14311/cej.2021.03.0059", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:19:25Z", "type": "Journal Article", "created": "2021-10-26", "title": "GEOPHYSICAL SURVEY AS A TOOL TO REVEAL SUBSURFACE STRATIFICATION AT A SMALL AGRICULTURAL HEADWATER CATCHMENT: A CASE STUDY", "description": "<p>Catchment drainage area is a basic spatial unit in landscape hydrology within which the authorities estimate a water balance and manage water resources. The catchment drainage area is commonly delineated based on the surface topography, which is determined using a digital elevation model. Therefore, only a flow over the surface is implicitly considered. However, a substantial portion of the rainfall water infiltrates and percolates through the soil profile to the groundwater, where geological structures control the drainage area instead of the topography of the soil surface. The discrepancy between the surface topography-based and bedrock-based drainage area can cause large discrepancies in water balance calculation. It this paper we present an investigation of the subsurface media stratification in a headwater catchment in the central part of the Czech Republic using a geophysical survey method - electrical resistivity tomography (ERT). Results indicate that the complexity of the subsurface geological layers cannot be estimated solely from the land surface topography. Although shallow layers copy the shape of the surface, the deeper layers do not. This finding has a strong implication on the water transport regime since it suggests that the deep drainage may follow different pathways and flow in other directions then the water in shallow soil profile or shallow subsurface structures.</p>", "keywords": ["13. Climate action", "Subsurface stratigraphy", "0207 environmental engineering", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "02 engineering and technology", "Hydrology", "Headwater catchment", "15. Life on land", "Electrical resistivity tomography", "6. Clean water"]}, "links": [{"href": "https://doi.org/10.14311/cej.2021.03.0059"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Stavebn%C3%AD%20obzor%20-%20Civil%20Engineering%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.14311/cej.2021.03.0059", "name": "item", "description": "10.14311/cej.2021.03.0059", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.14311/cej.2021.03.0059"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-25T00:00:00Z"}}, {"id": "10.3389/fpls.2021.698640", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-28T16:20:32Z", "type": "Journal Article", "created": "2021-08-06", "title": "High-Resolution X-Ray Computed Tomography: A New Workflow for the Analysis of Xylogenesis and Intra-Seasonal Wood Biomass Production", "description": "<p>Understanding tree growth and carbon sequestration are of crucial interest to forecast the feedback of forests to climate change. To have a global understanding of the wood formation, it is necessary to develop new methodologies for xylogenesis measurements, valid across diverse wood structures and applicable to both angiosperms and gymnosperms. In this study, the authors present a new workflow to study xylogenesis using high-resolution X-ray computed tomography (HRXCT), which is generic and offers high potential for automatization. The HXRCT-based approach was benchmarked with the current classical approach (microtomy) on three tree species with contrasted wood anatomy (Pinus nigra, Fagus sylvatica, and Quercus robur). HRXCT proved to estimate the relevant xylogenesis parameters (timing, duration, and growth rates) across species with high accuracy. HRXCT showed to be an efficient avenue to investigate tree xylogenesis for a wide range of wood anatomies, structures, and species. HRXCT also showed its potential to provide quantification of intra-annual dynamics of biomass production through high-resolution 3D mapping of wood biomass within the forming growth ring.</p>", "keywords": ["0106 biological sciences", "[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics", "XYLEM", "tree growth", "secondary growth phenology", "Plant Science", "01 natural sciences", "7. Clean energy", "[SDV.BV.BOT] Life Sciences [q-bio]/Vegetal Biology/Botanics", "SB1-1110", "Tree growth", "Secondary growth phenology", "microtomy", "PHENOLOGY", "[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics", " Phylogenetics and taxonomy", "FAGUS-SYLVATICA", "[SDV.EE.ECO] Life Sciences [q-bio]/Ecology", " environment/Ecosystems", "Biology", "TREE", "Xylogenesis", "580", "xylogenesis", "high-resolution X-ray computed tomography", "Biology and Life Sciences", "Plant culture", "Phylogenetics and taxonomy", "Microtomy", "[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics", "15. Life on land", "BEECH", "[SDE.BE] Environmental Sciences/Biodiversity and Ecology", "13. Climate action", "[SDV.EE.ECO]Life Sciences [q-bio]/Ecology", "PLANT STRUCTURE", "[SDE.BE]Environmental Sciences/Biodiversity and Ecology", "environment/Ecosystems", "Engineering sciences. Technology"]}, "links": [{"href": "https://doi.org/10.3389/fpls.2021.698640"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Frontiers%20in%20Plant%20Science", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.3389/fpls.2021.698640", "name": "item", "description": "10.3389/fpls.2021.698640", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.3389/fpls.2021.698640"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-08-06T00:00:00Z"}}, {"id": "10.15376/biores.13.3.5976-6002", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-28T16:19:29Z", "type": "Journal Article", "created": "2022-09-21", "title": "Effects of Biomass Type, Carbonization Process, and Activation Method on the Properties of Bio-Based Activated Carbons", "description": "<p>Activated carbons (AC) serve as adsorbents in various applications requiring specific functionalities. In this study, the effects of biomass type, pre-carbonization process, and activation method on the properties of ACs were investigated. Chemical (KOH and H3PO4) and physical (CO2) activations were performed on slow pyrolyzed and hydrothermally carbonized (HTC) biochars produced from two feedstocks, willow and Scots pine bark (SPB). In addition, the adsorption capacities of the ACs were tested with two dyes and zinc metal. Distinct differences were found between the biochars and ACs regarding pore size distributions, surface area (238 \uffe2\uff80\uff93 3505 m2 g-1), and surface chemistry. KOH activation produced highly microporous ACs from all biochars, whereas with H3PO4 and CO2 there was also increase in the meso- and macroporosity with the HTC biochars. Adsorption capacity for dyes was dependent on the surface area, while for zinc it depended on AC\uffe2\uff80\uff99s pH. The results provide interesting insights into tailoring ACs for specific applications.</p>", "keywords": ["bark", "willow", "biohiili", "330", "Willow", "Activated carbon", "Activated carbon;", "pine bark", "pajut", "Pinus sylvestris", "tomography", "bio-based activated carbon", "620", "Biochar", "tomografia", "Pine bark", "SDG 13 - Climate Action", "Bio-based activated carbon", "activated carbon", "biochar", "ta219", "SDG 7 - Affordable and Clean Energy", "X-ray tomography"]}, "links": [{"href": "https://bioresources.cnr.ncsu.edu/wp-content/uploads/2018/06/BioRes_13_3_5976_Siipola_Effects_Biomass_Type_Carbonizat_Process_Activat_Method_Activ_C_13985.pdf"}, {"href": "https://doi.org/10.15376/biores.13.3.5976-6002"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/BioResources", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.15376/biores.13.3.5976-6002", "name": "item", "description": "10.15376/biores.13.3.5976-6002", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.15376/biores.13.3.5976-6002"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-06-15T00:00:00Z"}}, {"id": "10.17863/cam.81466", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:19:42Z", "type": "Journal Article", "created": "2022-01-19", "title": "Multimodal correlative imaging and modelling of phosphorus uptake from soil by hyphae of mycorrhizal fungi", "description": "Summary<p>   <p>Phosphorus (P) is essential for plant growth. Arbuscular mycorrhizal fungi (AMF) aid its uptake by acquiring P from sources distant from roots in return for carbon. Little is known about how AMF colonise soil pore\uffe2\uff80\uff90space, and models of AMF\uffe2\uff80\uff90enhanced P\uffe2\uff80\uff90uptake are poorly validated.</p>  <p>We used synchrotron X\uffe2\uff80\uff90ray computed tomography to visualize mycorrhizas in soil and synchrotron X\uffe2\uff80\uff90ray fluorescence/X\uffe2\uff80\uff90ray absorption near edge structure (XRF/XANES) elemental mapping for P, sulphur (S) and aluminium (Al) in combination with modelling.</p>  <p>We found that AMF inoculation had a suppressive effect on colonisation by other soil fungi and identified differences in structure and growth rate between hyphae of AMF and nonmycorrhizal fungi. Our results showed that AMF co\uffe2\uff80\uff90locate with areas of high P and low Al, and preferentially associate with organic\uffe2\uff80\uff90type P species over Al\uffe2\uff80\uff90rich inorganic P.</p>  <p>We discovered that AMF avoid Al\uffe2\uff80\uff90rich areas as a source of P. Sulphur\uffe2\uff80\uff90rich regions were found to be correlated with higher hyphal density and an increased organic\uffe2\uff80\uff90associated P\uffe2\uff80\uff90pool, whilst oxidized S\uffe2\uff80\uff90species were found close to AMF hyphae. Increased S oxidation close to AMF suggested the observed changes were microbiome\uffe2\uff80\uff90related. Our experimentally\uffe2\uff80\uff90validated model led to an estimate of P\uffe2\uff80\uff90uptake by AMF hyphae that is an order of magnitude lower than rates previously estimated \uffe2\uff80\uff93 a result with significant implications for the modelling of plant\uffe2\uff80\uff93soil\uffe2\uff80\uff93AMF interactions.</p>  </p>", "keywords": ["580", "X-ray computed tomography", "570", "Research", "X-ray fluorescence", "Fungi", "Hyphae", "500", "Phosphorus", "mycorrhizas", "04 agricultural and veterinary sciences", "15. Life on land", "plant phosphorus uptake", "Plant Roots", "Soil", "rhizosphere modelling", "Mycorrhizae", "synchrotron", "0401 agriculture", " forestry", " and fisheries", "Soil Microbiology"]}, "links": [{"href": "https://eprints.soton.ac.uk/454110/1/Keyes_et_al_Myco_Paper_TR_04_01_2022_unmarked.pdf"}, {"href": "https://eprints.soton.ac.uk/454110/2/Figures_TR_22_12_2021.pdf"}, {"href": "https://eprints.soton.ac.uk/454110/3/SI_1_TR_22_12_2021_no_markup.pdf"}, {"href": "https://eprints.soton.ac.uk/454110/4/SI_2_TR_22_12_2021.pdf"}, {"href": "https://doi.org/10.17863/cam.81466"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20Phytologist", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.17863/cam.81466", "name": "item", "description": "10.17863/cam.81466", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.17863/cam.81466"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-02-15T00:00:00Z"}}, {"id": "10.2136/sssaj2015.03.0097", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:20:11Z", "type": "Journal Article", "created": "2015-07-10", "title": "From Real Soils to 3D-Printed Soils: Reproduction of Complex Pore Network at the Real Size in a Silty-Loam Soil", "description": "Pore complexity and micro-heterogeneity are pivotal in characterizing biogeochemical processes in soils. Recent advances in X-ray computed microtomography (microCT) allow the 3D soil morphology characterization of undisturbed samples, although its geometrical reproduction at very small spatial scales is still challenging. Here, by combining X-ray microCT with 3D multijet printing technology, we aimed to evaluate the reproducibility of 3D-printing soil structures at the original scale with a resolution of 80 \u03bcm and compare the hydraulic properties of original soil samples with those obtained from the soil-like prototypes. Results showed that soil-like prototypes were similar to the original samples in terms of total porosity and pore shape. By contrast the pore connectivity was reduced by incomplete wax removal from pore cavities after the 3D printing procedure. Encouraging results were also obtained in terms of hydraulic conductivity since measurements were successfully conducted on five out of six samples, showing positive correlation with experimental data. We are confident that future developments of 3D-printing technologies and of their combination with microCT will help to further the understanding of soil micro-heterogeneity and its effects on soil-water dynamics.", "keywords": ["2. Zero hunger", "[SDE.ES] Environmental Sciences/Environment and Society", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "[SDV.SA.SDS] Life Sciences [q-bio]/Agricultural sciences/Soil study", "Soil structure", " 3D Print; X-ray microtomography", " water permeability"], "contacts": [{"organization": "DAL FERRO, NICOLA, MORARI, FRANCESCO,", "roles": ["creator"]}]}, "links": [{"href": "https://www.research.unipd.it/bitstream/11577/3188605/4/Dal%20Ferro_From%20real%20soils%20to%203D%20printed%20soils_2015.pdf"}, {"href": "http://onlinelibrary.wiley.com/wol1/doi/10.2136/sssaj2015.03.0097/fullpdf"}, {"href": "https://doi.org/10.2136/sssaj2015.03.0097"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Science%20Society%20of%20America%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.2136/sssaj2015.03.0097", "name": "item", "description": "10.2136/sssaj2015.03.0097", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.2136/sssaj2015.03.0097"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-07-01T00:00:00Z"}}, {"id": "10.5061/dryad.x69p8czjv", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:21:15Z", "type": "Dataset", "title": "Dataset of nanoplastic transport in soil via bioturbation by Lumbricus terrestris", "description": "Open AccessPlease read ReadMe file before usage and contact authors for  further information or questions.", "keywords": ["2. Zero hunger", "X-ray computed tomography", "transport processes", "bioturbation", "environmental fate", "FOS: Earth and related environmental sciences", "Nanoplastics"], "contacts": [{"organization": "Heinze, Wiebke Mareile, Mitrano, Denise M., Lahive, Elma, Koestel, John, Cornelis, Geert,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/10.5061/dryad.x69p8czjv"}, {"rel": "self", "type": "application/geo+json", "title": "10.5061/dryad.x69p8czjv", "name": "item", "description": "10.5061/dryad.x69p8czjv", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5061/dryad.x69p8czjv"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-12-23T00:00:00Z"}}, {"id": "10.5194/bg-2021-259", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:21:19Z", "type": "Journal Article", "created": "2021-10-20", "title": "Peat macropore networks \u2013 new insights into episodic and hotspot methane emission", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Abstract. Peatlands are important natural sources of atmospheric methane (CH4) emissions. The emissions are strongly influenced by the diffusion of oxygen into the soil and of CH4 from the soil to the atmosphere. This diffusion, in turn, is controlled by the structure of macropore networks. The characterization of peat pore structure and connectivity through complex network theory approaches can give insight into how the relationship between the microscale pore space properties and CH4 emissions on a macroscopic scale is shaped. The formation of anaerobic pockets, which are local hotspots of CH4 production in unsaturated peat, can also be conceptualized through a pore network approach. In this study, we extracted interconnecting macropore networks from three-dimensional X-ray micro-computed tomography (\u00b5CT) images of peat samples and evaluated local and global connectivity metrics for the networks. We also simulated the water retention characteristics of the peat samples using a pore network modeling approach and compared the simulation results with measured water retention characteristics. The results showed large differences in peat macropore structure and pore network connectivity between vertical soil layers. The macropore space was more connected and the flow paths through the peat matrix were less tortuous near the soil surface than at deeper depths. In addition, macroporosity, structural anisotropy, and average pore throat diameter decreased with depth. Narrower and more winding air-filled diffusion channels may reduce the rate of CH4 transport as the distance from the peat layer to the soil\u2013air interface increases. Hysteresis was found to affect the evolution of the volume of connected air-filled pore space in unsaturated peat. Thus, the formation of anaerobic pockets may occur in a smaller soil volume and methanogenesis may be slower when the peat is wetting compared to drying conditions. This hysteretic behavior should be taken into account in biogeochemical models to explain the hotspots and episodic spikes of CH4 emissions. The network analysis also suggests that both local and global network connectivity metrics, such as the network average clustering coefficient and closeness centrality, might serve as proxies for assessing the efficiency of CH4 diffusion in air-filled pore networks. However, the applicability of the network metrics was restricted to the high-porosity near-surface layer. The spatial extent and global continuity of the pore network and the spatial distribution of the pores may be reflected in different network metrics in contrasting ways.                         </p></article>", "keywords": ["DYNAMICS", "RAY COMPUTED-TOMOGRAPHY", "DRAINAGE", "01 natural sciences", "soil", "CARBON-DIOXIDE", "Life", "QH501-531", "peatlands", "QH540-549.5", "0105 earth and related environmental sciences", "QE1-996.5", "PORE-SIZE", "FEN", "Ecology", "methane", "pore network", "HYDRAULIC CONDUCTIVITY", "Forestry", "Geology", "04 agricultural and veterinary sciences", "15. Life on land", "TRANSPORT", "Environmental sciences", "SOIL", "13. Climate action", "NORTHERN PEATLANDS", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://bg.copernicus.org/articles/19/1959/2022/bg-19-1959-2022.pdf"}, {"href": "https://doi.org/10.5194/bg-2021-259"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biogeosciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.5194/bg-2021-259", "name": "item", "description": "10.5194/bg-2021-259", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5194/bg-2021-259"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-20T00:00:00Z"}}, {"id": "1985394658", "type": "Feature", "geometry": null, "properties": {"license": "unspecified", "updated": "2026-07-28T16:24:22Z", "type": "Journal Article", "created": "2002-07-27", "title": "Sympathetic Cardioneuropathy in Dysautonomias", "description": "The classification of dysautonomias has been confusing, and the pathophysiology obscure. We examined sympathetic innervation of the heart in patients with acquired, idiopathic dysautonomias using thoracic positron-emission tomography and assessments of the entry rate of the sympathetic neurotransmitter norepinephrine into the cardiac venous drainage (cardiac norepinephrine spillover). We related the laboratory findings to signs of sympathetic neurocirculatory failure (orthostatic hypotension and abnormal blood-pressure responses associated with the Valsalva maneuver), central neural degeneration, and responsiveness to treatment with levodopa-carbidopa (Sinemet).Cardiac scans were obtained after intravenous administration of 6-[18F]fluorodopamine in 26 patients with dysautonomia. Fourteen had sympathetic neurocirculatory failure--three with no signs of central neurodegeneration (pure autonomic failure), two with parkinsonism responsive to treatment with levodopa-carbidopa, and nine with central neurodegeneration unresponsive to treatment with levodopa-carbidopa (the Shy-Drager syndrome). The rates of cardiac norepinephrine spillover were estimated on the basis of concentrations of intravenously infused [3H]norepinephrine during catheterization of the right side of the heart.Patients with pure autonomic failure or parkinsonism and sympathetic neurocirculatory failure had no myocardial 6-[18F]fluorodopamine-derived radioactivity or cardiac norepinephrine spillover, indicating loss of myocardial sympathetic-nerve terminals, whereas patients with the Shy-Drager syndrome had increased levels of 6-[18F]fluorodopamine-derived radioactivity, indicating intact sympathetic terminals and absent nerve traffic. Patients with dysautonomia who did not have sympathetic neurocirculatory failure had normal levels of 6-[18F]fluorodopamine-derived radioactivity in myocardium and normal rates of cardiac norepinephrine spillover.The results of 6-[18F]fluorodopamine positron-emission tomography and neurochemical analyses support a new clinical pathophysiologic classification of dysautonomias, based on the occurrence of sympathetic neurocirculatory failure, signs of central neurodegeneration, and responsiveness to levodopa-carbidopa.", "keywords": ["Adult", "Aged", " 80 and over", "Fluorine Radioisotopes", "Nitrogen Radioisotopes", "Sympathetic Nervous System", "Epinephrine", "Dopamine", "Myocardium", "Shy-Drager Syndrome", "Heart", "Parkinson Disease", "Middle Aged", "3. Good health", "Diagnosis", " Differential", "Levodopa", "Norepinephrine", "Autonomic Nervous System Diseases", "Ammonia", "Parasympathetic Nervous System", "Reference Values", "Coronary Circulation", "Humans", "Aged", "Tomography", " Emission-Computed"], "contacts": [{"organization": "Graeme Eisenhofer, Richard O. Cannon, Irwin J. Kopin, Courtney Holmes, David S. Goldstein,", "roles": ["creator"]}]}, "links": [{"href": "https://doi.org/1985394658"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/New%20England%20Journal%20of%20Medicine", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "1985394658", "name": "item", "description": "1985394658", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/1985394658"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "1997-01-01T00:00:00Z"}}, {"id": "10.5281/zenodo.10454335", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:21:34Z", "type": "Journal Article", "created": "2023-01-31", "title": "Long-term contrasting tillage in Cambisol: effect on water-stable aggregates, macropore network and soil chemical properties", "description": "The aggregate stability of the soil is subject to theinfluence of anthropogenic factors and is of great interest all overthe world. The research aimed to quantify the correlations betweensoil organic carbon, total nitrogen, total phosphorus, and totalpotassium, soil macropore parameters and water-stable aggregatesunder no-tillage and conventional tillage in Cambisol. The contentof water-stable aggregates and macroporosity tended to increasein the following order: conventional tillage (returned residues)< conventional tillage (removed residues) < no-tillage (removedresidues) < no-tillage (returned residues) in both fertilizations.The relationships between total nitrogen and various soil factorswere investigated: soil organic carbon (r = 0.65, p < 0.05), totalphosphorus (r = 0.65, p < 0.05), were statistically significant. Soilorganic carbon and total nitrogen were positively correlated withwater-stable aggregates (r = 0.81, p < 0.01 and r = 0.68, p < 0.05,respectively), whereas the relationship between total potassiumand water-stable aggregates was negative. The relationshipbetween total phosphorus and water-stable aggregates (r = 0.62,p < 0.05) was positive. The soil chemical properties, macroporesand water-stable aggregates that were averaged across theresidues and fertilizations were higher in no-tillage than in conventionaltillage. Soil organic carbon, total nitrogen and totalphosphorus all had a positive direct influence on the formation ofwater-stable aggregates under different tillage conditions. Sinceour results are largely based on correlations, the mechanismsof interaction between the soil chemical properties, water-stableaggregates and the formation of pores in the soil need to beexplored further in future investigations.", "keywords": ["soil organic carbon", "2. Zero hunger", "Cambisoil", "13. Climate action", "conventional tillage", "no-tillage", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "X-ray computed tomography", ""]}, "links": [{"href": "https://doi.org/10.5281/zenodo.10454335"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/International%20Agrophysics", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10.5281/zenodo.10454335", "name": "item", "description": "10.5281/zenodo.10454335", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10.5281/zenodo.10454335"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-01-31T00:00:00Z"}}, {"id": "20.500.11820/03f81a44-477a-4a8c-b34d-85892c85bd6f", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:24:26Z", "type": "Journal Article", "created": "2017-10-13", "title": "An Explicit Structural Model of Root Hair and Soil Interactions Parameterised by Synchrotron X-ray Computed Tomography", "description": "The rhizosphere is a zone of fundamental importance for understanding the dynamics of nutrient acquisition by plant roots. The canonical difficulty of experimentally investigating the rhizosphere led long ago to the adoption of mathematical models, the most sophisticated of which now incorporate explicit representations of root hairs and rhizosphere soil. Mathematical upscaling regimes, such as homogenisation, offer the possibility of incorporating into larger-scale models the important mechanistic processes occurring at the rhizosphere scale. However, we lack concrete descriptions of all the features required to fully parameterise models at the rhizosphere scale. By combining synchrotron X-ray computed tomography (SRXCT) and a novel root growth assay, we derive a three-dimensional description of rhizosphere soil structure suitable for use in multi-scale modelling frameworks. We describe an approach to mitigate sub-optimal root hair detection via structural root hair growth modelling. The growth model is explicitly parameterised with SRXCT data and simulates three-dimensional root hair ideotypes in silico, which are suitable for both ideotypic analysis and parameterisation of 3D geometry in mathematical models. The study considers different hypothetical conditions governing root hair interactions with soil matrices, with their respective effects on hair morphology being compared between idealised and image-derived soil/root geometries. The studies in idealised geometries suggest that packing arrangement of soil affects hair tortuosity more than the particle diameter. Results in field-derived soil suggest that hair access to poorly mobile nutrients is particularly sensitive to the physical interaction between the growing hairs and the phase of the soil in which soil water is present (i.e. the hydrated textural phase). The general trends in fluid-coincident hair length with distance from the root, and their dependence on hair/soil interaction mechanisms, are conserved across Cartesian and cylindrical geometries.", "keywords": ["Plant biology", "2. Zero hunger", "0301 basic medicine", "0303 health sciences", "X-ray CT", "Biomedical imaging and signal processing", "Mathematical Concepts", "15. Life on land", "Models", " Biological", "Plant Roots", "root hairs", "Soil", "03 medical and health sciences", "Imaging", " Three-Dimensional", "in silico", "structural modelling", "synchrotron", "Rhizosphere", "Original Article", "Computer Simulation", "rhizosphere", "Tomography", " X-Ray Computed", "Synchrotrons"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11538-017-0350-x.pdf"}, {"href": "https://doi.org/20.500.11820/03f81a44-477a-4a8c-b34d-85892c85bd6f"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Bulletin%20of%20Mathematical%20Biology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "20.500.11820/03f81a44-477a-4a8c-b34d-85892c85bd6f", "name": "item", "description": "20.500.11820/03f81a44-477a-4a8c-b34d-85892c85bd6f", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/20.500.11820/03f81a44-477a-4a8c-b34d-85892c85bd6f"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-10-13T00:00:00Z"}}, {"id": "10138/342506", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:23:44Z", "type": "Journal Article", "created": "2021-10-20", "title": "Peat macropore networks \u2013 new insights into episodic and hotspot methane emission", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Abstract. Peatlands are important natural sources of atmospheric methane (CH4) emissions. The emissions are strongly influenced by the diffusion of oxygen into the soil and of CH4 from the soil to the atmosphere. This diffusion, in turn, is controlled by the structure of macropore networks. The characterization of peat pore structure and connectivity through complex network theory approaches can give insight into how the relationship between the microscale pore space properties and CH4 emissions on a macroscopic scale is shaped. The formation of anaerobic pockets, which are local hotspots of CH4 production in unsaturated peat, can also be conceptualized through a pore network approach. In this study, we extracted interconnecting macropore networks from three-dimensional X-ray micro-computed tomography (\u00b5CT) images of peat samples and evaluated local and global connectivity metrics for the networks. We also simulated the water retention characteristics of the peat samples using a pore network modeling approach and compared the simulation results with measured water retention characteristics. The results showed large differences in peat macropore structure and pore network connectivity between vertical soil layers. The macropore space was more connected and the flow paths through the peat matrix were less tortuous near the soil surface than at deeper depths. In addition, macroporosity, structural anisotropy, and average pore throat diameter decreased with depth. Narrower and more winding air-filled diffusion channels may reduce the rate of CH4 transport as the distance from the peat layer to the soil\u2013air interface increases. Hysteresis was found to affect the evolution of the volume of connected air-filled pore space in unsaturated peat. Thus, the formation of anaerobic pockets may occur in a smaller soil volume and methanogenesis may be slower when the peat is wetting compared to drying conditions. This hysteretic behavior should be taken into account in biogeochemical models to explain the hotspots and episodic spikes of CH4 emissions. The network analysis also suggests that both local and global network connectivity metrics, such as the network average clustering coefficient and closeness centrality, might serve as proxies for assessing the efficiency of CH4 diffusion in air-filled pore networks. However, the applicability of the network metrics was restricted to the high-porosity near-surface layer. The spatial extent and global continuity of the pore network and the spatial distribution of the pores may be reflected in different network metrics in contrasting ways.</p></article>", "keywords": ["DYNAMICS", "RAY COMPUTED-TOMOGRAPHY", "DRAINAGE", "01 natural sciences", "soil", "CARBON-DIOXIDE", "Life", "QH501-531", "peatlands", "QH540-549.5", "0105 earth and related environmental sciences", "QE1-996.5", "PORE-SIZE", "FEN", "Ecology", "methane", "pore network", "HYDRAULIC CONDUCTIVITY", "Forestry", "Geology", "04 agricultural and veterinary sciences", "15. Life on land", "TRANSPORT", "Environmental sciences", "SOIL", "13. Climate action", "NORTHERN PEATLANDS", "0401 agriculture", " forestry", " and fisheries"]}, "links": [{"href": "https://bg.copernicus.org/articles/19/1959/2022/bg-19-1959-2022.pdf"}, {"href": "https://doi.org/10138/342506"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Biogeosciences", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10138/342506", "name": "item", "description": "10138/342506", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10138/342506"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-20T00:00:00Z"}}, {"id": "10261/259704", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-28T16:23:47Z", "type": "Journal Article", "created": "2022-01-18", "title": "Lessons from a landmark 1991 article on soil structure: distinct precedence of non-destructive assessment and benefits of fresh perspectives in soil research", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>In 1991, at the launch of a national symposium devoted to soil structure, the Australian Society of Soil Science invited Professor John Letey to deliver a keynote address, which was later published in the society\u2019s journal. In his lecture, he shared the outcome of his reflexion about what the assessment of soil structure should amount to, in order to produce useful insight into the functioning of soils. His viewpoint was that the focus should be put on the openings present in the structure, rather than on the chunks of material resulting from its mechanical dismantlement. In the present article, we provide some historical background for Letey\u2019s analysis, and try to explain why it took a number of years for the paradigm shift that he advocated to begin to occur. Over the last decade, his perspective that soil structure needs to be characterised via non-destructive methods appears to have gained significant momentum, which is likely to increase further in the near future, as we take advantage of recent technological advances. Other valuable lessons that one can derive from Letey\u2019s pioneering article relate to the extreme value for everyone, even neophytes, to constantly ask questions about where research on given topics is heading, what its goals are, and whether the methods that are used at a certain time are optimal.</p></article>", "keywords": ["570", "soil image analysis", "soil microorganisms", "[SDE.MCG]Environmental Sciences/Global Changes", "Soil measuring", "earthworms", "micromorphology", "Aggregate stability", "Soil functions", "01 natural sciences", "630", "Soil fauna", "soil organic matter", "Earthworms", "Micromorphology", "Computed tomography", "aggregate stability", "0105 earth and related environmental sciences", "soil measuring", "2. Zero hunger", "Soil organic matter", "computed tomography", "04 agricultural and veterinary sciences", "soil functions", "15. Life on land", "[SDE.MCG] Environmental Sciences/Global Changes", "Soil image analysis", "0401 agriculture", " forestry", " and fisheries", "soil fauna", "earthworms; micromorphology", "Soil microorganisms"]}, "links": [{"href": "https://doi.org/10261/259704"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10261/259704", "name": "item", "description": "10261/259704", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10261/259704"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-01-19T00:00:00Z"}}, {"id": "10261/276526", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:23:47Z", "type": "Journal Article", "created": "2021-10-26", "title": "GEOPHYSICAL SURVEY AS A TOOL TO REVEAL SUBSURFACE STRATIFICATION AT A SMALL AGRICULTURAL HEADWATER CATCHMENT: A CASE STUDY", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Catchment drainage area is a basic spatial unit in landscape hydrology within which the authorities estimate a water balance and manage water resources. The catchment drainage area is commonly delineated based on the surface topography, which is determined using a digital elevation model. Therefore, only a flow over the surface is implicitly considered. However, a substantial portion of the rainfall water infiltrates and percolates through the soil profile to the groundwater, where geological structures control the drainage area instead of the topography of the soil surface. The discrepancy between the surface topography-based and bedrock-based drainage area can cause large discrepancies in water balance calculation. It this paper we present an investigation of the subsurface media stratification in a headwater catchment in the central part of the Czech Republic using a geophysical survey method - electrical resistivity tomography (ERT). Results indicate that the complexity of the subsurface geological layers cannot be estimated solely from the land surface topography. Although shallow layers copy the shape of the surface, the deeper layers do not. This finding has a strong implication on the water transport regime since it suggests that the deep drainage may follow different pathways and flow in other directions then the water in shallow soil profile or shallow subsurface structures.</p></article>", "keywords": ["13. Climate action", "Subsurface stratigraphy", "0207 environmental engineering", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "02 engineering and technology", "Hydrology", "Headwater catchment", "15. Life on land", "Electrical resistivity tomography", "6. Clean water"]}, "links": [{"href": "https://doi.org/10261/276526"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Stavebn%C3%AD%20obzor%20-%20Civil%20Engineering%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10261/276526", "name": "item", "description": "10261/276526", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10261/276526"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2021-10-25T00:00:00Z"}}, {"id": "10261/355209", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:23:49Z", "type": "Journal Article", "created": "2023-11-27", "title": "A high\u2010throughput analysis of high\u2010resolution X\u2010ray CT images of stems of olive and citrus plants resistant and susceptible to                     Xylella fastidiosa", "description": "Abstract                   <p>                     The bacterial plant pathogen                     Xylella fastidiosa                     causes disease in several globally important crops. However, some cultivars harbour reduced bacterial loads and express few symptoms. Evidence considering plant species in isolation suggests xylem structure influences cultivar susceptibility to                     X                     .                     fastidiosa                     . We test this theory more broadly by analysing high\uffe2\uff80\uff90resolution synchrotron X\uffe2\uff80\uff90ray computed tomography of healthy and infected plant vasculature from two taxonomic groups containing susceptible and resistant varieties: two citrus cultivars (sweet orange cv. Pera, tangor cv. Murcott) and two olive cultivars (Koroneiki, Leccino). Results found the susceptible plants had more vessels than resistant ones, which could promote within\uffe2\uff80\uff90host pathogen spread. However, features associated with resistance were not shared by citrus and olive. While xylem vessels in resistant citrus stems had comparable diameters to those in susceptible plants, resistant olives had narrower vessels that could limit biofilm spread. And while differences among olive cultivars were not detected, results suggest greater vascular connectivity in resistant compared to susceptible citrus plants. We hypothesize that this provides alternate flow paths for sustaining hydraulic functionality under infection. In summary, this work elucidates different physiological resistance mechanisms between two taxonomic groups, while supporting the existence of an intertaxonomical metric that could speed up the identification of candidate\uffe2\uff80\uff90resistant plants.                   </p", "keywords": ["2. Zero hunger", "resistance", "X-ray computed tomography", "Xylella fastidiosa", "Olive quick decline syndrome", "citrus variegated chlorosis", "olive quick decline syndrome", "Resistance", "Citrus variegated chlorosis", "15. Life on land", "xylem", "630"]}, "links": [{"href": "https://doi.org/10261/355209"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Pathology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "10261/355209", "name": "item", "description": "10261/355209", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/10261/355209"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2023-11-27T00:00:00Z"}}, {"id": "11577/3188605", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:24:06Z", "type": "Journal Article", "created": "2015-07-10", "title": "From Real Soils to 3D-Printed Soils: Reproduction of Complex Pore Network at the Real Size in a Silty-Loam Soil", "description": "Pore complexity and micro-heterogeneity are pivotal in characterizing biogeochemical processes in soils. Recent advances in X-ray computed microtomography (microCT) allow the 3D soil morphology characterization of undisturbed samples, although its geometrical reproduction at very small spatial scales is still challenging. Here, by combining X-ray microCT with 3D multijet printing technology, we aimed to evaluate the reproducibility of 3D-printing soil structures at the original scale with a resolution of 80 \u03bcm and compare the hydraulic properties of original soil samples with those obtained from the soil-like prototypes. Results showed that soil-like prototypes were similar to the original samples in terms of total porosity and pore shape. By contrast the pore connectivity was reduced by incomplete wax removal from pore cavities after the 3D printing procedure. Encouraging results were also obtained in terms of hydraulic conductivity since measurements were successfully conducted on five out of six samples, showing positive correlation with experimental data. We are confident that future developments of 3D-printing technologies and of their combination with microCT will help to further the understanding of soil micro-heterogeneity and its effects on soil-water dynamics.", "keywords": ["2. Zero hunger", "[SDE.ES] Environmental Sciences/Environment and Society", "0401 agriculture", " forestry", " and fisheries", "04 agricultural and veterinary sciences", "15. Life on land", "[SDV.SA.SDS] Life Sciences [q-bio]/Agricultural sciences/Soil study", "Soil structure", " 3D Print; X-ray microtomography", " water permeability"], "contacts": [{"organization": "DAL FERRO, NICOLA, MORARI, FRANCESCO,", "roles": ["creator"]}]}, "links": [{"href": "https://www.research.unipd.it/bitstream/11577/3188605/4/Dal%20Ferro_From%20real%20soils%20to%203D%20printed%20soils_2015.pdf"}, {"href": "http://onlinelibrary.wiley.com/wol1/doi/10.2136/sssaj2015.03.0097/fullpdf"}, {"href": "https://doi.org/11577/3188605"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Science%20Society%20of%20America%20Journal", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "11577/3188605", "name": "item", "description": "11577/3188605", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/11577/3188605"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-07-01T00:00:00Z"}}, {"id": "11577/3291713", "type": "Feature", "geometry": null, "properties": {"updated": "2026-07-28T16:24:06Z", "type": "Journal Article", "created": "2018-11-15", "title": "Effect of long-term irrigation and tillage practices on X-ray CT and gas transport derived pore-network characteristics", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>The gas transport parameters, diffusivity and air-filled porosity are crucial for soil aeration, microbial activity and greenhouse gas emission, and directly depend on soil structure. In this study, we analysed the effect of long-term tillage and irrigation practices on the surface structure of an arable soil in New Zealand. Our hypothesis was that topsoil structure would change under intensification of arable production, affecting gas exchange. Intact soil cores were collected from plots under intensive tillage (IT) and direct drill (DD), irrigated or rainfed. In total, 32 cores were scanned by X-ray computed tomography (CT) to derive the pore network &amp;gt;30 \u00b5m. The cores were then used to measure soil-gas diffusivity, air-permeability and air-filled porosity of pores close to the resolution of the X-ray CT scans, namely =30 \u00b5m. The gas measurements allow the calculation of pore-network connectivity and tortuosity parameters, which were compared with the CT-derived structural characteristics. Long-term irrigation had little effect on any of the parameters analysed. Total porosity tended to be lower under IT than DD, whereas the CT-derived porosity was comparable. Both the CT-derived mean pore diameter (MPD) and other morphological parameters, as well as gas measurement-derived parameters, highlighted a less developed structure under IT. The differences in the functional pore-network structure were attributed to SOC depletion and the mechanical disturbance through IT. Significant correlations between CT-derived parameters and functional gas transport parameters such as tortuosity and MPD were found, which suggest that X-ray CT could be useful in the prediction of gas transport.</p></article>", "keywords": ["AGRICULTURE", "soil structure.", "P-parameter", "Soil structure", "carbon depletion", "MANAGEMENT", "COMPUTED-TOMOGRAPHY", "PERMEABILITY", "CONSERVATION TILLAGE", "Dexter index", "Intensive tillage", "SOIL ORGANIC-CARBON", "carbon depletion; Dexter index; intensive tillage; P -parameter; soil organic carbon; soil structure.; Environmental Science (miscellaneous); Soil Science; Earth-Surface Processes", "P -parameter", "LOAM SOIL", "Soil organic carbon", "POROSITY", "04 agricultural and veterinary sciences", "15. Life on land", "soil organic carbon", "NO-TILL", "NITROGEN", "[SDE.MCG] Environmental Sciences/Global Changes", "0401 agriculture", " forestry", " and fisheries", "Carbon depletion", "soil structure", "intensive tillage"]}, "links": [{"href": "https://www.publish.csiro.au/SR/pdf/SR18210"}, {"href": "https://doi.org/11577/3291713"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "11577/3291713", "name": "item", "description": "11577/3291713", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/11577/3291713"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2018-11-16T00:00:00Z"}}, {"id": "11577/3318878", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:24:07Z", "type": "Journal Article", "created": "2019-08-25", "title": "Impacts of land use on hydrodynamic properties and pore architecture of volcanic soils from the Mexican Highlands", "description": "<?xml version='1.0' encoding='UTF-8'?><article><p>Volcanic soils are important resources because of their unique mineralogical and physical characteristics, and allophanic Andosols represent some of the world\u2019s most fertile soils. However, their unique properties can be lost when cultivated. Most soils in the Central Valley, Mexico, are derived from volcanic materials. This valley encompasses one of the largest water supply systems in the world by volume, but is affected by soil degradation and deforestation. Sustainably managing volcanic soils requires understanding how land use affects their hydrodynamic properties. Gas adsorption and mercury intrusion porosimetry, water retention curves, tension infiltrometry and X-ray tomography were used to describe pore structure characteristics. Two volcanic soils (one Andosol and one derived from indurated tuff \u2013 Tepetates), three land uses (maize monoculture, maize\u2013wheat rotation and fallow) and two horizons (Ap and A2 for maize monoculture and maize\u2013wheat rotation) were studied. Tillage affected topsoil by increasing the sand fraction by 38% and decreasing total porosity and macroporosity by 23% and 40% respectively. Macropore size was reduced and the number of isolated macropores was higher in the tilled layer under maize, compared with untilled subsoil. The plot under maize\u2013wheat rotation had lower allophane content, and saturated hydraulic conductivity was reduced by nearly an order of magnitude and water retention by half, compared with maize and fallow plots. Compared with Andosols, Tepetates showed differences in mineralogical composition with lower contents of amorphous compounds and in its porous network characteristics with twice the total and percolating macroporosity compared with the maize plot. Its high content of organic carbon (3.5%) seemed beneficial for its hydrodynamic properties. Sustainable agricultural management of these volcanic soils requires reducing mechanised tillage, avoiding periods when soil is bare, not applying maize\u2013wheat rotation and applying maize\u2013fallow rotation allowing natural vegetation growth.</p></article>", "keywords": ["2. Zero hunger", "550", "[SDE.MCG]Environmental Sciences/Global Changes", "04 agricultural and veterinary sciences", "15. Life on land", "630", "6. Clean water", "12. Responsible consumption", "[SDE.MCG] Environmental Sciences/Global Changes", "pore size distribution", "13. Climate action", "Andosol; pore size distribution; X-ray tomography", "0401 agriculture", " forestry", " and fisheries", "X-ray tomography", "Andosol"]}, "links": [{"href": "https://doi.org/11577/3318878"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Soil%20Research", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "11577/3318878", "name": "item", "description": "11577/3318878", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/11577/3318878"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2019-08-26T00:00:00Z"}}, {"id": "1886144451", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:24:18Z", "type": "Journal Article", "created": "2015-09-14", "title": "Visualization and Characterization of Heterogeneous Water Flow in Double-Porosity Media by Means of X-ray Computed Tomography", "description": "Three-dimensional visualization of dynamic water transport process in soil by 1 computed tomography (CT) technique is still limited by its low temporal resolution. In order 2 to monitor dynamically water transport in soil, a compromise has to be found between water 3 flow velocity and CT acquisition time. Furthermore, an efficient image analysis method is 1 4 necessary. In this work, we followed the water transport in three dimensions by CT imaging 5 across a double-porosity media constituted of two distinct materials, i.e. sand and porous 6 clay spheres. The CT acquisition parameters were adjusted to the water pore velocity so that 7 we succeeded to register the water front displacement per time range of 25 min. We also used 8 the image subtraction method to extract water distribution evolution with time with a space 9 resolution of 6 \u00d7 10 \u22123 cm. Both time and space resolution are relatively high compared with 10 other dynamic studies. The water content profiles showed that the clay spheres remained 11 in their dry state during water infiltration, while the water transport only occurred in the 12 sand matrix. These results are consistent with macroscopic experiments. The water front 13 visualized by CT showed a non-symmetrical shape which was related to water transfer in 14 non-equilibrium as shown by column displacement experiments.", "keywords": ["2. Zero hunger", "550", "[SDE.IE]Environmental Sciences/Environmental Engineering", "0208 environmental biotechnology", "Porous media", "0207 environmental engineering", "02 engineering and technology", "[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil study", "6. Clean water", "620", "Image analysis", "3D visualization", "[SDU.STU.HY] Sciences of the Universe [physics]/Earth Sciences/Hydrology", "[SDE.IE] Environmental Sciences/Environmental Engineering", "[SDU.STU.HY]Sciences of the Universe [physics]/Earth Sciences/Hydrology", "[SDV.SA.SDS] Life Sciences [q-bio]/Agricultural sciences/Soil study", "Computed tomography", "Water transport"]}, "links": [{"href": "http://link.springer.com/content/pdf/10.1007/s11242-015-0572-z"}, {"href": "https://doi.org/1886144451"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Transport%20in%20Porous%20Media", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "1886144451", "name": "item", "description": "1886144451", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/1886144451"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-09-14T00:00:00Z"}}, {"id": "20.500.14243/420312", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:24:31Z", "type": "Journal Article", "created": "2022-11-11", "title": "The impact of xylem geometry on olive cultivar resistance to Xylella fastidiosa: An image\u2010based study", "description": "Abstract                   <p>                     Xylella fastidiosa                     is a xylem\uffe2\uff80\uff90limited plant pathogen infecting many crops globally and is the cause of the recent olive disease epidemic in Italy. One strategy proposed to mitigate losses is to replant susceptible crops with resistant varieties. Several genetic, biochemical and biophysical traits are associated to                     X                     .                     fastidiosa                     disease resistance. However, mechanisms underpinning resistance are poorly understood. We hypothesize that the susceptibility of olive cultivars to infection will correlate to xylem vessel diameters, with narrower vessels being resistant to air embolisms and having slower flow rates limiting pathogen spread. To test this, we scanned stems from four olive cultivars of varying susceptibility to                     X                     .                     fastidiosa                     using X\uffe2\uff80\uff90ray computed tomography. Scans were processed by a bespoke methodology that segmented vessels, facilitating diameter measurements. Though significant differences were not found comparing stem\uffe2\uff80\uff90average vessel section diameters among cultivars, they were found when comparing diameter distributions. Moreover, the measurements indicated that although vessel diameter distributions may play a role regarding the resistance of Leccino, it is unlikely they do for FS17. Considering Young\uffe2\uff80\uff93Laplace and Hagen\uffe2\uff80\uff93Poiseuille equations, we inferred differences in embolism susceptibility and hydraulic conductivity of the vasculature. Our results suggest susceptible cultivars, having a greater proportion of larger vessels, are more vulnerable to air embolisms. In addition, results suggest that under certain pressure conditions, functional vasculature in susceptible cultivars could be subject to greater stresses than in resistant cultivars. These results support investigation into xylem morphological screening to help inform olive replanting. Furthermore, our framework could test the relevance of xylem geometry to disease resistance in other crops.                   </p", "keywords": ["2. Zero hunger", "X-ray computed tomography", "0106 biological sciences", "15. Life on land", "Xylella", "01 natural sciences", "630", "olive dieback"]}, "links": [{"href": "https://iris.cnr.it/bitstream/20.500.14243/420312/1/prod_473732-doc_193088.pdf"}, {"href": "https://eprints.soton.ac.uk/471748/9/Plant_Pathology_2022_Walker_The_Impact_of_Xylem_Geometry_on_Olive_Cultivar_Resistance_to_Xylella_fastidiosa_An.pdf"}, {"href": "https://doi.org/20.500.14243/420312"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%20Pathology", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "20.500.14243/420312", "name": "item", "description": "20.500.14243/420312", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/20.500.14243/420312"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2022-11-19T00:00:00Z"}}, {"id": "2034733356", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:24:33Z", "type": "Journal Article", "created": "2015-04-27", "title": "Application of smoothed particle hydrodynamics (SPH) and pore morphologic model to predict saturated water conductivity from X-ray CT imaging in a silty loam Cambisol", "description": "20 This study aims to estimate saturated hydraulic conductivity in a silty loam soil and compare modelled data with 21 experimental ones. The flow characteristics of twelve undisturbed soil cores (5 cm in diameter \u00d7 6 cm high) were 22 measured in the laboratory after performing X-ray computed microtomography (microCT) analysis. MicroCT 3D 23 imaging was integrated with an existing pore morphologic model and a numerical simulation based on mesh-24 free smoothed particle hydrodynamics (SPH) to calculate the water flow through the macropore network 25 (pores N 40 \u03bcm). Results showed that the proposed SPH method was able to predict hydraulic conductivity of 26 large-sized samples as falling in the range of the experimental ones. By contrast the morphologic model generally 27 underestimated the water flow and was slightly affected by the pore shape. Increasing microCT imaging resolu-28 tion and expanding the variability with other soil types will improve the understanding of the role of micropore 29 size and morphology on water conductivity. 30", "keywords": ["2. Zero hunger", "550", "[ SDV.SA.SDS ] Life Sciences [q-bio]/Agricultural sciences/Soil study", "0207 environmental engineering", "600", "04 agricultural and veterinary sciences", "02 engineering and technology", "Pore size distribution", "[ SDE.IE ] Environmental Sciences/Environmental Engineering", "Saturated hydraulic conductivity", "Soil structure", "0401 agriculture", " forestry", " and fisheries", "[ SDU.STU.HY ] Sciences of the Universe [physics]/Earth Sciences/Hydrology", "X-ray computed microtomography"]}, "links": [{"href": "https://doi.org/2034733356"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Geoderma", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2034733356", "name": "item", "description": "2034733356", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2034733356"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2015-10-01T00:00:00Z"}}, {"id": "2614033554", "type": "Feature", "geometry": null, "properties": {"license": "Open Access", "updated": "2026-07-28T16:24:46Z", "type": "Journal Article", "created": "2017-05-15", "title": "Quantification of root water uptake in soil using X\u2010ray computed tomography and image\u2010based modelling", "description": "Abstract<p>Spatially averaged models of root\uffe2\uff80\uff93soil interactions are often used to calculate plant water uptake. Using a combination of X\uffe2\uff80\uff90ray computed tomography (CT) and image\uffe2\uff80\uff90based modelling, we tested the accuracy of this spatial averaging by directly calculating plant water uptake for young wheat plants in two soil types. The root system was imaged using X\uffe2\uff80\uff90ray CT at 2, 4, 6, 8 and 12\uffc2\uffa0d after transplanting. The roots were segmented using semi\uffe2\uff80\uff90automated root tracking for speed and reproducibility. The segmented geometries were converted to a mesh suitable for the numerical solution of Richards' equation. Richards' equation was parameterized using existing pore scale studies of soil hydraulic properties in the rhizosphere of wheat plants. Image\uffe2\uff80\uff90based modelling allows the spatial distribution of water around the root to be visualized and the fluxes into the root to be calculated. By comparing the results obtained through image\uffe2\uff80\uff90based modelling to spatially averaged models, the impact of root architecture and geometry in water uptake was quantified. We observed that the spatially averaged models performed well in comparison to the image\uffe2\uff80\uff90based models with &lt;2% difference in uptake. However, the spatial averaging loses important information regarding the spatial distribution of water near the root system.</p", "keywords": ["0106 biological sciences", "2. Zero hunger", "0301 basic medicine", "0303 health sciences", "550", "Water", "15. Life on land", "01 natural sciences", "Models", " Biological", "Plant Roots", "6. Clean water", "Soil", "03 medical and health sciences", "Imaging", " Three-Dimensional", "Tomography", " X-Ray Computed", "Porosity"]}, "links": [{"href": "https://eprints.nottingham.ac.uk/42292/1/170405_WP2_Paper_update_final%20Mooney.pdf"}, {"href": "https://onlinelibrary.wiley.com/doi/pdf/10.1111/pce.12983"}, {"href": "https://doi.org/2614033554"}, {"rel": "related", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/Plant%2C%20Cell%20%26amp%3B%20Environment", "name": "related record", "description": "related record", "type": "application/json"}, {"rel": "self", "type": "application/geo+json", "title": "2614033554", "name": "item", "description": "2614033554", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items/2614033554"}, {"rel": "collection", "type": "application/json", "title": "Collection", "name": "collection", "description": "Collection", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main"}], "time": {"date": "2017-07-05T00:00:00Z"}}], "links": [{"rel": "self", "type": "application/geo+json", "title": "This document as GeoJSON", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=tomography&f=json", "hreflang": "en-US"}, {"rel": "alternate", "type": "text/html", "title": "This document as HTML", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=tomography&f=html", "hreflang": "en-US"}, {"rel": "collection", "type": "application/json", "title": "Collection URL", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main", "hreflang": "en-US"}, {"type": "application/geo+json", "rel": "first", "title": "items (first)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=tomography&", "hreflang": "en-US"}, {"rel": "next", "type": "application/geo+json", "title": "items (next)", "href": "https://repository.soilwise-he.eu/cat/collections/metadata:main/items?keywords=tomography&offset=50", "hreflang": "en-US"}], "numberMatched": 65, "numberReturned": 50, "distributedFeatures": [], "timeStamp": "2026-07-28T20:10:25.355433Z"}